Query psy8002
Match_columns 469
No_of_seqs 229 out of 1685
Neff 9.9
Searched_HMMs 29240
Date Sat Aug 17 00:19:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 100.0 1.5E-54 5.2E-59 474.6 46.5 434 19-464 442-892 (939)
2 3cww_A Insulysin, insulin-degr 100.0 4.9E-54 1.7E-58 472.9 47.3 446 18-465 459-918 (990)
3 3gwb_A Peptidase M16 inactive 100.0 5.4E-36 1.8E-40 299.8 33.0 380 67-466 13-412 (434)
4 3cx5_A Cytochrome B-C1 complex 100.0 1.7E-34 6E-39 288.6 31.8 376 69-466 2-404 (431)
5 3amj_B Zinc peptidase inactive 100.0 2.7E-34 9.1E-39 286.7 29.1 380 68-466 4-405 (424)
6 3d3y_A Uncharacterized protein 100.0 2.3E-33 7.9E-38 279.8 33.1 367 71-463 6-412 (425)
7 1pp9_B Ubiquinol-cytochrome C 100.0 2E-33 6.9E-38 281.6 32.6 371 68-463 24-419 (439)
8 1hr6_A Alpha-MPP, mitochondria 100.0 9.3E-33 3.2E-37 279.5 32.9 377 68-464 6-417 (475)
9 3eoq_A Putative zinc protease; 100.0 8.9E-32 3E-36 266.8 33.8 377 70-466 4-396 (406)
10 3hdi_A Processing protease; CA 100.0 2.3E-31 7.9E-36 265.2 32.4 374 70-466 4-395 (421)
11 3ami_A Zinc peptidase; alpha/b 100.0 6.1E-30 2.1E-34 256.7 33.1 381 69-466 8-413 (445)
12 1hr6_B Beta-MPP, mitochondrial 100.0 5.7E-29 1.9E-33 249.5 35.5 384 68-466 7-419 (443)
13 1pp9_A Ubiquinol-cytochrome C 100.0 5.9E-29 2E-33 249.6 33.0 381 68-466 14-419 (446)
14 3go9_A Insulinase family prote 100.0 8.9E-28 3E-32 243.3 25.5 376 69-465 27-438 (492)
15 2fge_A Atprep2;, zinc metallop 100.0 1.2E-27 4.2E-32 263.0 21.5 387 47-464 533-963 (995)
16 1q2l_A Protease III; hydrolase 99.9 1.2E-22 4.1E-27 222.2 27.0 382 69-465 22-429 (939)
17 3cww_A Insulysin, insulin-degr 99.9 7.1E-21 2.4E-25 209.2 26.9 382 69-465 36-445 (990)
18 2fge_A Atprep2;, zinc metallop 99.9 2.4E-20 8.3E-25 205.0 27.0 376 71-465 41-473 (995)
19 3s5m_A Falcilysin; M16 metallo 99.9 5.4E-20 1.8E-24 200.8 27.7 379 68-465 87-576 (1193)
20 3cx5_B Cytochrome B-C1 complex 99.9 8E-21 2.7E-25 184.3 16.3 299 89-417 10-315 (352)
21 3s5m_A Falcilysin; M16 metallo 99.7 5.6E-16 1.9E-20 169.3 20.4 371 75-464 725-1159(1193)
22 3ih6_A Putative zinc protease; 99.5 5.2E-13 1.8E-17 117.9 12.5 154 309-466 23-185 (197)
23 3ih6_A Putative zinc protease; 98.4 5.2E-06 1.8E-10 72.5 14.9 162 90-254 23-193 (197)
24 3eoq_A Putative zinc protease; 98.0 6.8E-05 2.3E-09 73.3 14.5 162 90-256 234-405 (406)
25 3gwb_A Peptidase M16 inactive 97.9 0.00011 3.7E-09 72.4 13.1 164 90-256 248-422 (434)
26 3amj_B Zinc peptidase inactive 97.9 0.00022 7.6E-09 69.9 15.2 163 90-257 241-416 (424)
27 3hdi_A Processing protease; CA 97.9 0.00038 1.3E-08 68.2 16.4 161 90-256 233-405 (421)
28 3ami_A Zinc peptidase; alpha/b 97.8 0.0003 1E-08 69.6 14.7 164 91-256 244-423 (445)
29 1pp9_B Ubiquinol-cytochrome C 97.8 0.00036 1.2E-08 68.7 15.3 163 90-256 251-431 (439)
30 1hr6_B Beta-MPP, mitochondrial 97.7 0.00054 1.8E-08 67.6 15.6 163 89-256 244-429 (443)
31 1hr6_A Alpha-MPP, mitochondria 97.7 0.00068 2.3E-08 67.6 16.4 163 90-255 242-437 (475)
32 1pp9_A Ubiquinol-cytochrome C 97.7 0.00046 1.6E-08 68.3 13.8 109 147-256 320-429 (446)
33 3d3y_A Uncharacterized protein 97.7 0.00053 1.8E-08 67.1 13.9 162 89-254 252-421 (425)
34 3cx5_A Cytochrome B-C1 complex 97.7 0.00044 1.5E-08 67.9 13.3 110 147-256 302-414 (431)
35 3go9_A Insulinase family prote 97.2 0.0091 3.1E-07 59.7 16.0 181 90-271 265-465 (492)
36 3cx5_B Cytochrome B-C1 complex 95.1 0.048 1.6E-06 51.6 7.9 148 309-466 11-168 (352)
37 1use_A VAsp, vasodilator-stimu 49.4 28 0.00096 21.3 3.9 33 371-411 3-35 (45)
38 1fad_A Protein (FADD protein); 32.5 1.4E+02 0.0048 21.5 7.5 59 394-462 36-97 (99)
39 3gnn_A Nicotinate-nucleotide p 26.0 51 0.0017 29.8 3.6 38 226-265 235-272 (298)
40 1gff_3 Bacteriophage G4 capsid 26.0 33 0.0011 17.6 1.3 15 73-87 11-25 (26)
41 2yqf_A Ankyrin-1; death domain 25.3 1.4E+02 0.0047 22.3 5.5 59 394-462 40-101 (111)
42 1r9f_A Core protein P19; prote 23.4 1.3E+02 0.0044 22.3 4.6 33 133-167 85-117 (136)
43 3bbz_A P protein, phosphoprote 23.1 1.2E+02 0.0042 18.9 3.8 23 388-410 24-47 (49)
44 2r9i_A Putative phage capsid p 20.2 2.2E+02 0.0074 21.2 5.3 44 228-271 3-47 (141)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.5e-54 Score=474.62 Aligned_cols=434 Identities=20% Similarity=0.316 Sum_probs=384.4
Q ss_pred ccccccccccccccccH-HHHHhhcCC---------CCCCCCCCCCCccCCCCCCCCCCCeEEecCCCeeeeeecCCccc
Q psy8002 19 NIVKSEFDKREYRGLEL-QNGMKKWTN---------PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYR 88 (469)
Q Consensus 19 ~~~~~~~y~~~Y~~~~i-~~~~~~~~~---------P~~N~fip~~f~~~~~~~~~~~~P~~i~~~~~~~lw~~~d~~f~ 88 (469)
...+++||+|+|.+.++ ++.++.|.. |.+|+|||++|++.+.+ .....|.++..+||++||+++|+.|+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~n~~~~~~~~~~~~~-~~~~~p~~~~l~ng~~v~~~~~~~f~ 520 (939)
T 1q2l_A 442 HNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSE-KKYDHPELIVDESNLRVVYAPSRYFA 520 (939)
T ss_dssp CCEECTTTCCEEEEEECCHHHHHHHHHHHHTCCCCCCCCCTTCCCCCCCCCCS-SCCSSCEEEEEETTEEEEEECCSSCT
T ss_pred CCcccceeCCeeeeeeCCHHHHHHHhccCccccccCCCCCcCCCcCcccccCc-CCCCCCEEEEECCCceEeecCCCccC
Confidence 34579999999999999 999888853 89999999999987643 24567999999999999999999998
Q ss_pred cc-ceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccCceEEEeeeCcceEEEEeecCccHHHHHHHHHH
Q psy8002 89 VP-KLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLD 167 (469)
Q Consensus 89 ~P-k~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~~~~~~~g~~i~~~G~s~~l~~ll~~i~~ 167 (469)
+| ++.|.+.+.+|....++++.+++.|+..++.+++.+..|.+.++|++++++. .+|+.+.++|++++++.+++.+.+
T Consensus 521 ~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~ 599 (939)
T 1q2l_A 521 SEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLE 599 (939)
T ss_dssp TSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHH
T ss_pred CCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHH
Confidence 86 9999999999998889999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCCCHHHHHHHccCCCHHHHHHHHHHHHHhHhh
Q psy8002 168 KLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFI 247 (469)
Q Consensus 168 ~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~ 247 (469)
.+.+| .+++++|+++|+++++++++...++|+.++...+..+++++.|+..+..++|+++|++++.+|+++++.+.++
T Consensus 600 ~l~~p--~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~ 677 (939)
T 1q2l_A 600 GYFSY--TATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARP 677 (939)
T ss_dssp HHHHC--CCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEE
T ss_pred HHhCC--CCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheE
Confidence 99999 9999999999999999999955678999999999999988788888999999999999999999999999999
Q ss_pred heeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceEEeccCCCCCCeEE-EEEEecCCcChHh
Q psy8002 248 EALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCI-EAYYQCGVQELRD 326 (469)
Q Consensus 248 ~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ns~v-~~~~q~~~~~~~~ 326 (469)
+++|+||++.++++++++.+++.++... +.+ ...+...++.+..+.+....+ +.++++ .++++.+..+.+.
T Consensus 678 ~~~vvGn~~~~~~~~l~~~~~~~l~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 749 (939)
T 1q2l_A 678 EFMVIGNMTEAQATTLARDVQKQLGADG---SEW----CRNKDVVVDKKQSVIFEKAGN-STDSALAAVFVPTGYDEYTS 749 (939)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHTCCC---SCC----CCCEEECCCSCEEEEEEECCS-SSCEEEEEEEECSSCCHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHccCC---ccc----cccceEEeCCCceEEEecCCC-CCCceeEEEEEecCCCCHHH
Confidence 9999999999999999999888886431 111 011122233343333332323 345666 7788888777888
Q ss_pred HHHHHHHhhccCCCcc----cccccCcEEEeeeeecCCeeeEEEEEecC-CChhHHHHHHHHHHHHHHHHHcCCCHHHHH
Q psy8002 327 NVLLELFYPIPDEHTH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSD-KHPLFVDSRIEAFLAQMKDLISNMPDEEFQ 401 (469)
Q Consensus 327 ~~~~~ll~~il~~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~-~~~~~l~~~I~~fl~~~~~~l~~~seeef~ 401 (469)
.+++.+|++++++++| |++||||+|+++.....+..|+.|+|||+ ++|+++.++|+.|++++.+.++++|++||+
T Consensus 750 ~~~~~lL~~~~~s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~~~t~~el~ 829 (939)
T 1q2l_A 750 SAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFA 829 (939)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 8999999999999999 99999999999998888889988899995 599999999999999999888899999999
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhcCC
Q psy8002 402 SHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYT 464 (469)
Q Consensus 402 ~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~ 464 (469)
++|+++++++...++++.++++++|.+|..+.+.|++.+++++.|++||++||++++++++.+
T Consensus 830 ~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~ 892 (939)
T 1q2l_A 830 QIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVE 892 (939)
T ss_dssp HHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998888999999999999999999999999998754
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=4.9e-54 Score=472.90 Aligned_cols=446 Identities=48% Similarity=0.839 Sum_probs=391.5
Q ss_pred cccccccccccccccccH-HHHHhhcCC---------CCCCCCCCCCCccCCCCCCCCCCCeEEecCCCeeeeeecCCcc
Q psy8002 18 NNIVKSEFDKREYRGLEL-QNGMKKWTN---------PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEY 87 (469)
Q Consensus 18 ~~~~~~~~y~~~Y~~~~i-~~~~~~~~~---------P~~N~fip~~f~~~~~~~~~~~~P~~i~~~~~~~lw~~~d~~f 87 (469)
....+++||+++|.+.++ +++++.|.. |.+|+|||++|++.+.+......|.++..++|+++|++++++|
T Consensus 459 ~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ip~~~~~~~~~~~~~~~p~~~~~~ng~~v~~~~~~~f 538 (990)
T 3cww_A 459 KTDRTEEWYGTQYKQEAIPDAVIAKWQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPYPALIKDTAMSKLWFKQDDKF 538 (990)
T ss_dssp CCCEECTTTCCEEEEEECCHHHHHHHHTCCCCTTCCCCCCCTTCCCCCCCCCCCTTCCSSCEEEEECSSEEEEEEECSSC
T ss_pred CcCcccceeCceeeeecCCHHHHHHhhcCCCCccccCCCCCCCCCcccccccCCCCCCCCCeeeecCCCceEeeccCCcc
Confidence 445679999999999999 999888854 8889999999998754423456799999999999999999999
Q ss_pred cccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccCceEEEeeeCcceEEEEeecCccHHHHHHHHHH
Q psy8002 88 RVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLD 167 (469)
Q Consensus 88 ~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~~~~~~~g~~i~~~G~s~~l~~ll~~i~~ 167 (469)
++|++.+++.+.+|....+++..+++.|++.++.+.+++..|.+.++|++++++.+.+|+.++++|++++++.+++++.+
T Consensus 539 ~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~ 618 (990)
T 3cww_A 539 FLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIE 618 (990)
T ss_dssp CCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHH
T ss_pred CCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhCCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCCCHHHHHHHccCCCHHHHHHHHHHHHHhHhh
Q psy8002 168 KLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFI 247 (469)
Q Consensus 168 ~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~ 247 (469)
.+.+| .+++++|+++|+++++++++...++|..++...+..++++..|...+..+.|+.+|.+++.+|+++++++.++
T Consensus 619 ~l~~p--~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~lt~~~l~~~~~~~~~~~~~ 696 (990)
T 3cww_A 619 KMATF--EIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHI 696 (990)
T ss_dssp HHHTC--CCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCHHHHHHHHTTCCHHHHHHHHHHHHHEEEE
T ss_pred HHhcC--CCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheE
Confidence 99999 9999999999999999999955558999999999999998889988899999999999999999999999999
Q ss_pred heeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceEEeccCCCCCCeEEEEEEecCCcChHhH
Q psy8002 248 EALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDN 327 (469)
Q Consensus 248 ~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ns~v~~~~q~~~~~~~~~ 327 (469)
+++|+||++.+++..+++.+.+.+...+...+.+..+....+.+.+|.+..+++...++.+.++++.++++.+..+.++.
T Consensus 697 ~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 776 (990)
T 3cww_A 697 EALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSEN 776 (990)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEEEEEECCHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEEEecCCCCCCcEEEEEEeCCCCCHHHH
Confidence 99999999999999986555444432111111111111112234455565544432345678899999999887888999
Q ss_pred HHHHHHhhccCCCcc----cccccCcEEEeeeeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q psy8002 328 VLLELFYPIPDEHTH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSH 403 (469)
Q Consensus 328 ~~~~ll~~il~~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~~~seeef~~~ 403 (469)
+.+.||+++|++++| |++||||+|+|+.....+..|+.+.|||+++|+++.++|+.|++++...+.++|++||+++
T Consensus 777 ~~l~ll~~il~~~lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~~~te~el~~~ 856 (990)
T 3cww_A 777 MFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIEDMTEEAFQKH 856 (990)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEEEEEEeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999 8899999999999999999999999999999999999999999999888788999999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhcCCC
Q psy8002 404 KEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYTE 465 (469)
Q Consensus 404 k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~~ 465 (469)
|.++++++..+++++..+++++|.++..+.+.|++.++.++.|++||++||++|+++++.++
T Consensus 857 k~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~ 918 (990)
T 3cww_A 857 IQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVD 918 (990)
T ss_dssp HHHHHHHHHCCCSSHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 3
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=5.4e-36 Score=299.84 Aligned_cols=380 Identities=11% Similarity=0.062 Sum_probs=301.5
Q ss_pred CCeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhh---hcccc--cCceEEEe
Q psy8002 67 HPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYS---YDAKL--AGLAWDLS 141 (469)
Q Consensus 67 ~P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~---y~a~~--ag~~~~~~ 141 (469)
.++....+||++||+++++.+ |++.+.+.+..|...+ +...+++.++..++..+..... +...+ .|.+++.+
T Consensus 13 ~~~~~~L~NGl~v~~~~~~~~--~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~ 89 (434)
T 3gwb_A 13 NVQTWSTAEGAKVLFVEAREL--PMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNG 89 (434)
T ss_dssp CCEEEECTTCCEEEEEECCSS--SEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEE
T ss_pred CCEEEEcCCCeEEEEEECCCC--CEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEee
Confidence 356777899999999998864 8999999999988766 7778999999999988764432 22223 37888999
Q ss_pred eeCcceEEEEeecCcc--HHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-C--
Q psy8002 142 NTKYGMMLGISGYSHK--QSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-A-- 216 (469)
Q Consensus 142 ~~~~g~~i~~~G~s~~--l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~-- 216 (469)
.+.+++.+.++|++++ ++.+++.+.+.+.+| .+++++|+++|+.+++++++ ..++|...+...+...+++. +
T Consensus 90 t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~~~~~~~~e~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 166 (434)
T 3gwb_A 90 AYKDMAVASLRSLSAVDKREPALKLFAEVVGKP--TFPADSLARIKNQMLAGFEY-QKQNPGKLASLELMKRLYGTHPYA 166 (434)
T ss_dssp ECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTSTTS
T ss_pred ecCCeEEEEEEecCccccHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcCCCCCC
Confidence 8899999999999999 999999999999999 99999999999999999999 58899999999888888753 2
Q ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCC
Q psy8002 217 WSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEK 296 (469)
Q Consensus 217 ~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (469)
++..+..+.|+++|.+++++|++++|.+.+++++|+||++.+++.++++.+++.|+..+.. +.+ .....+.+
T Consensus 167 ~~~~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~-~~~-------~~~~~~~~ 238 (434)
T 3gwb_A 167 HASDGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPAL-AKI-------EQPAEPKA 238 (434)
T ss_dssp SCTTCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCC-CCC-------CCCCCCCC
T ss_pred CCCCCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCC-CCC-------CCCCCCCC
Confidence 3445678999999999999999999999999999999999999999999998888654211 100 00112223
Q ss_pred CceEEeccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhc-----cCCCcc----cccccCcEEEeeeeecCCeeeEEEE
Q psy8002 297 SNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPI-----PDEHTH----YQEQLGYIVVSGIRKSSGVQGLRII 367 (469)
Q Consensus 297 ~~~~~~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~i-----l~~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~ 367 (469)
....+.. +. .++.+.++|+.+..+.++.+.+.+++.+ +++++| +++||+|+|+++.....+.+.+.++
T Consensus 239 ~~~~~~~--~~-~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~ 315 (434)
T 3gwb_A 239 SIGHIEF--PS-SQTSLMLAQLGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMIN 315 (434)
T ss_dssp EEEEEEC--CS-SEEEEEEEEECCBTTCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEE
T ss_pred ceEEEeC--CC-CceeEEecCcCCCCCCcchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCceeEEEE
Confidence 3333332 22 5667777888776666777778877777 677888 7789999999998877766666666
Q ss_pred EecCCChhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHH
Q psy8002 368 VQSDKHPLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYL 446 (469)
Q Consensus 368 vqs~~~~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l 446 (469)
+++ +|+.+.+.++.+.+++.+.. .++|++||+++|..++.++....++....+.++|.....+ ++++..++..+.|
T Consensus 316 ~~~--~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i 392 (434)
T 3gwb_A 316 LQT--RAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYN-LPLSYLEDFMRQS 392 (434)
T ss_dssp EEE--EGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTT-CCTTHHHHHHHHH
T ss_pred Eec--chhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcC-CCccHHHHHHHHH
Confidence 664 44455555555555555444 6999999999999999999999999999999998876554 5778888999999
Q ss_pred hcCCHHHHHHHHHhhcCCCC
Q psy8002 447 KSVTKENVLKFYDKRNYTES 466 (469)
Q Consensus 447 ~~lT~edv~~~~~~~~~~~s 466 (469)
++||.+||++++++||.++.
T Consensus 393 ~~vt~~dv~~~a~~~l~~~~ 412 (434)
T 3gwb_A 393 QELTVEQVKAAMNKHLNVDK 412 (434)
T ss_dssp HHCCHHHHHHHHHHHCCGGG
T ss_pred HhCCHHHHHHHHHHhcChhh
Confidence 99999999999999998654
No 4
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=1.7e-34 Score=288.56 Aligned_cols=376 Identities=13% Similarity=0.064 Sum_probs=296.5
Q ss_pred eEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccCceEEEeeeCcceE
Q psy8002 69 TILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMM 148 (469)
Q Consensus 69 ~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~~~~~~~g~~ 148 (469)
+....+||+++|+++++.+ |++.+.+.+..|...+++...+++.++..++..+... |.+...|.+++.+.+.+++.
T Consensus 2 ~~~~L~NGl~v~~~~~~~~--~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--~~~~~~G~~~na~t~~~~t~ 77 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSA--HTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--AVAAKEGLALSSNISRDFQS 77 (431)
T ss_dssp CCEEEESSSEEEEEECTTC--SSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--HHHHHTTCEEEEEECSSCEE
T ss_pred eEEECCCCCEEEEEECCCC--CEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--ccHHHcCCeeeeeecCCeEE
Confidence 3455789999999998874 8999999999988777778889999999999877553 56788999999999999999
Q ss_pred EEEeecCccHHHHHHHHHHHHccCCCC---CChHHHHHHHHHHHHHhccccccCh-HHHHHHHHHHhccCCC---CCHHH
Q psy8002 149 LGISGYSHKQSVLLSKVLDKLADFSNH---IDPKRYEIIKEQYYRGLKNFEAEQP-YQHAIYSISLCLFERA---WSKTE 221 (469)
Q Consensus 149 i~~~G~s~~l~~ll~~i~~~l~~~~~~---~~~~~f~~~k~~~~~~~~n~~~~~p-~~~a~~~l~~~l~~~~---~~~~~ 221 (469)
+.+++++++++.+++.+.+.+.+| . +++++|+++|+.+++++++ ..++| ...+...+...+++.. ++..+
T Consensus 78 ~~~~~~~~~l~~~l~ll~~~~~~p--~~~~f~~~~~~~ek~~v~~e~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 78 YIVSSLPGSTDKSLDFLNQSFIQQ--KANLLSSSNFEATKKSVLKQVQD-FEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp EEEEECSTTHHHHHHHHHHHHHTC--STTTTCHHHHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred EEEEechhhHHHHHHHHHHHHhCc--ccccCCHHHHHHHHHHHHHHHHh-hhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 999999999999999999999999 9 9999999999999999998 67789 9999888888887532 45567
Q ss_pred HHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceEE
Q psy8002 222 LLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVY 301 (469)
Q Consensus 222 ~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 301 (469)
..++|+++|.+++++|++++|.+.++.++|+||++.+++.+++++++..++.. +.+.. . . ...+.+....+
T Consensus 155 ~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~----~~~~~---~-~-~~~~~~~~~~~ 225 (431)
T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTG----TKPVL---K-K-KAAFLGSEVRL 225 (431)
T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCS----CCCCC---C-C-CCCCCCEEEEE
T ss_pred CHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCC----CCCCC---C-C-CCcccCceEEE
Confidence 78999999999999999999999999999999999999988877633333321 11100 0 0 00112222222
Q ss_pred eccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhccC-------------CCcc---cccccCcEEEeeeeecCCeeeEE
Q psy8002 302 ETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPD-------------EHTH---YQEQLGYIVVSGIRKSSGVQGLR 365 (469)
Q Consensus 302 ~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il~-------------~~~f---tk~qLgY~V~s~~~~~~~~~~~~ 365 (469)
. ....+++.+.++|+.+..+.++...+.+++++|+ +++| -++|++|+|+++.....+.+.+.
T Consensus 226 ~--~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v~~~~~~~~~~g~~~ 303 (431)
T 3cx5_A 226 R--DDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWG 303 (431)
T ss_dssp E--CTTSSSEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEEEEEEEECSSCEEEE
T ss_pred c--CCCCCceEEEEEeecCCCCCccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeEeEeecccCCCceEE
Confidence 2 2234577888888877666677778888888776 7888 45699999999887655444455
Q ss_pred EEEecCCCh-hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc--CCCChhhHHHHhHHhhh-ccccccccchH
Q psy8002 366 IIVQSDKHP-LFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLE--KPKKLSGLSSRFWLEIT-TQQYNFDRANI 441 (469)
Q Consensus 366 ~~vqs~~~~-~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~--~~~sl~~~~~~~w~~i~-~~~~~f~~~~~ 441 (469)
+.++. +| +.+.+.++.+.+++.+...++|++||+++|+.++.++.. ..++....+.++|..+. .+.. .+ .++
T Consensus 304 i~~~~--~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~-~~~ 379 (431)
T 3cx5_A 304 FSTAT--RNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSK-LS-LGE 379 (431)
T ss_dssp EEEEE--SCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSC-CC-HHH
T ss_pred EEEee--CchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCC-CC-HHH
Confidence 55543 33 566666666666666554589999999999999999999 89999999999998754 4543 23 477
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCCC
Q psy8002 442 EVAYLKSVTKENVLKFYDKRNYTES 466 (469)
Q Consensus 442 ~~~~l~~lT~edv~~~~~~~~~~~s 466 (469)
..+.|++||.+||++++++++.++.
T Consensus 380 ~~~~i~~vt~~dv~~~a~~~l~~~~ 404 (431)
T 3cx5_A 380 AFKKIDAITVKDVKAWAGKRLWDQD 404 (431)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCC
Confidence 8899999999999999999998653
No 5
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=2.7e-34 Score=286.66 Aligned_cols=380 Identities=13% Similarity=0.090 Sum_probs=295.5
Q ss_pred CeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhh----h---hhhcccc--cCceE
Q psy8002 68 PTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALN----E---YSYDAKL--AGLAW 138 (469)
Q Consensus 68 P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~----e---~~y~a~~--ag~~~ 138 (469)
......+||+++|+++++. .|++.+.+.+..|...+++...+++.++..++..+.. . ..+...+ .|.++
T Consensus 4 ~~~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 4 IEHWTAPSGAQVYYVENRT--LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CEEEECTTSCEEEEEECCS--SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred cEEEECCCCcEEEEEECCC--CCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 3456789999999999886 4799999999988877777788999999999987544 2 2233333 37788
Q ss_pred EEeeeCcceEEEEeecCccH--HHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-
Q psy8002 139 DLSNTKYGMMLGISGYSHKQ--SVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER- 215 (469)
Q Consensus 139 ~~~~~~~g~~i~~~G~s~~l--~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~- 215 (469)
+...+.+++.+.++++++++ +.+++.+.+.+.+| .+++++|+++|+.+++++++ ..++|...+...+...+++.
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~e~~~v~~e~~~-~~~~p~~~~~~~~~~~~~~~~ 158 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHP--TFPAPVLERERARAIAGLRE-AQTQPGSILGRRFTELAYGKH 158 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHH-HTTSHHHHHHHHHHHHHHTTS
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHhcCCCC
Confidence 88888899999999999998 99999999999999 99999999999999999998 57799999998888888752
Q ss_pred CCCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCC
Q psy8002 216 AWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPE 295 (469)
Q Consensus 216 ~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 295 (469)
+|......+.|+++|.+++++|++++|.+.+++++|+||++.+++.++++++++.++......+.+ . ...+.
T Consensus 159 p~~~~~~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~-----~---~~~~~ 230 (424)
T 3amj_B 159 PYGHVSSVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLP-----D---PAMPR 230 (424)
T ss_dssp GGGCCCCHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCC-----C---CCCCC
T ss_pred CCCCCCCHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCC-----C---CCCCC
Confidence 222111568889999999999999999999999999999999999999988776665331111100 0 11222
Q ss_pred CCceEEeccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhc-----cCCCcc----cccccCcEEEeeeeecCCeeeEEE
Q psy8002 296 KSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPI-----PDEHTH----YQEQLGYIVVSGIRKSSGVQGLRI 366 (469)
Q Consensus 296 ~~~~~~~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~i-----l~~~~f----tk~qLgY~V~s~~~~~~~~~~~~~ 366 (469)
+..+.+. ....++.+.++++.+..+.++.+.+.+++++ +++++| +++||+|+|+++.....+.+.+.+
T Consensus 231 ~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i 307 (424)
T 3amj_B 231 ATVERIA---NPATQAHIAIGMPTLKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQI 307 (424)
T ss_dssp CEEEEEE---CSSSEEEEEEEEEEEBTTCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEE
T ss_pred CceEEee---CCCCccEEEeeccCCCCCCcchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEE
Confidence 3333332 1235677888888666666777888888888 455788 678999999998877666666666
Q ss_pred EEecCCChhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHH
Q psy8002 367 IVQSDKHPLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAY 445 (469)
Q Consensus 367 ~vqs~~~~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~ 445 (469)
.+++ +|+.+.+.++.+.+++.+.. .++|++||+++|+.++.++....++....+..++..... ++.++..+...+.
T Consensus 308 ~~~~--~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 384 (424)
T 3amj_B 308 GFET--RAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYY-GLPLDYLDHYTER 384 (424)
T ss_dssp EEEE--ESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHT-TCCTTTTTSHHHH
T ss_pred EEEe--CcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHc-CCChhHHHHHHHH
Confidence 6664 34455566666666665554 589999999999999999998888888888887754443 4567777888999
Q ss_pred HhcCCHHHHHHHHHhhcCCCC
Q psy8002 446 LKSVTKENVLKFYDKRNYTES 466 (469)
Q Consensus 446 l~~lT~edv~~~~~~~~~~~s 466 (469)
|++||.+||++++++|+.+++
T Consensus 385 i~~vt~~dv~~~a~~~l~~~~ 405 (424)
T 3amj_B 385 VQAVTVEQVREAFARHVKREN 405 (424)
T ss_dssp HHTCCHHHHHHHHHHHCCGGG
T ss_pred HHcCCHHHHHHHHHHhcCccc
Confidence 999999999999999998754
No 6
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=2.3e-33 Score=279.82 Aligned_cols=367 Identities=13% Similarity=0.142 Sum_probs=291.1
Q ss_pred EecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhh----hhccccc---CceEEEeee
Q psy8002 71 LYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEY----SYDAKLA---GLAWDLSNT 143 (469)
Q Consensus 71 i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~----~y~a~~a---g~~~~~~~~ 143 (469)
+..+||++||+++++.| |++.+.+.+..|...++ .+++.++..++..+.... .+...++ |.+++.+.+
T Consensus 6 ~~L~nG~~v~~~~~~~~--~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~ 80 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKY--KTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVS 80 (425)
T ss_dssp EEEETTEEEEEEECSSC--SEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEE
T ss_pred eeccCCcEEEEEecCcc--ceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeee
Confidence 55789999999998875 79999999998875433 578999999998876553 3444454 888887776
Q ss_pred Ccc----eEEEEeecCc-------cHHHHHHHHHHHHccCCCC-----CChHHHHHHHHHHHHHhccccccChHHHHHHH
Q psy8002 144 KYG----MMLGISGYSH-------KQSVLLSKVLDKLADFSNH-----IDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYS 207 (469)
Q Consensus 144 ~~g----~~i~~~G~s~-------~l~~ll~~i~~~l~~~~~~-----~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~ 207 (469)
.++ +.+.++++++ +++.+++.+.+.+.+| . +++++|+++|+.+++++++ ..++|...+...
T Consensus 81 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p--~~~~~~f~~~~~~~~k~~v~~e~~~-~~~~p~~~~~~~ 157 (425)
T 3d3y_A 81 KKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAP--NIQAGQFEAETFQREKENLKAYLES-IVEDKQTYASLA 157 (425)
T ss_dssp EETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSC--SEETTEECHHHHHHHHHHHHHHHHH-HHHSHHHHHHHH
T ss_pred ecCceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCc--ccccCCCCHHHHHHHHHHHHHHHHH-HhhCHHHHHHHH
Confidence 655 7999999998 6999999999999999 9 9999999999999999998 677899999998
Q ss_pred HHHhcc-C-CC--CCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcc
Q psy8002 208 ISLCLF-E-RA--WSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPS 283 (469)
Q Consensus 208 l~~~l~-~-~~--~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~ 283 (469)
+...++ + ++ ++..+..+.|+.+|.+++++|++++|.+.+++++|+||++.+++.+++ ++++ ++.... +.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~--~~~~- 232 (425)
T 3d3y_A 158 LQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREE--GKAA- 232 (425)
T ss_dssp HHHHHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCC--CCCC-
T ss_pred HHHHhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCcccc--cccc-
Confidence 888887 4 33 345667889999999999999999999999999999999999999998 7766 653211 0000
Q ss_pred cccccceeecCCCC--ceEEeccCCCCCCeEEEEEEecC-CcChHhHHHHHHHhhcc----CCCcc----cccccCcEEE
Q psy8002 284 QLLRFREIKIPEKS--NLVYETQNAVHKSSCIEAYYQCG-VQELRDNVLLELFYPIP----DEHTH----YQEQLGYIVV 352 (469)
Q Consensus 284 ~~~~~~~~~l~~~~--~~~~~~~~~~~~ns~v~~~~q~~-~~~~~~~~~~~ll~~il----~~~~f----tk~qLgY~V~ 352 (469)
.....|.+. ..... .++..++.+.++|+.+ ..+.++.+.+.+++++| ++++| +++||+|+|+
T Consensus 233 -----~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~ 305 (425)
T 3d3y_A 233 -----IFYNQPIRNVIEERTE--REVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYAS 305 (425)
T ss_dssp -----SCCCCCCCSSCEEEEE--EEECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEE
T ss_pred -----ccccccCCCcceeEEe--cCCccccEEEEEeecCCCCCCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEe
Confidence 011122221 12222 1344678888889875 56777888899999999 67888 6789999999
Q ss_pred eeeeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhc
Q psy8002 353 SGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITT 431 (469)
Q Consensus 353 s~~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~ 431 (469)
++.....+. |.+++.++|+++.+.++.|.+++.+.. .++|++||+++|+.++.++....++....+.++|..+..
T Consensus 306 ~~~~~~~g~----~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (425)
T 3d3y_A 306 SSIDTFRGF----MTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELM 381 (425)
T ss_dssp EEEETTTTE----EEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred ccccccCce----EEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhh
Confidence 987654433 233344578899999999999988877 479999999999999999998888988899999988877
Q ss_pred -cccccccchHHHHHHhcCCHHHHHHHHHhhcC
Q psy8002 432 -QQYNFDRANIEVAYLKSVTKENVLKFYDKRNY 463 (469)
Q Consensus 432 -~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~ 463 (469)
+.. .+ .++..+.|++||++||++++++++.
T Consensus 382 ~g~~-~~-~~~~~~~i~~vt~edv~~~a~~~~~ 412 (425)
T 3d3y_A 382 PQTM-LT-AEEWIARINAVTIPEIQEVAKRLEL 412 (425)
T ss_dssp TTSC-CC-HHHHHHHHHHCCHHHHHHHHHHCEE
T ss_pred cCCC-CC-HHHHHHHHHhCCHHHHHHHHHhccC
Confidence 543 23 6788999999999999999999763
No 7
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=2e-33 Score=281.55 Aligned_cols=371 Identities=10% Similarity=0.036 Sum_probs=300.8
Q ss_pred CeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccCceEEEee
Q psy8002 68 PTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALN-----EYSYDAKLAGLAWDLSN 142 (469)
Q Consensus 68 P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~ag~~~~~~~ 142 (469)
......+||+++|++++ . .|++.+.+.+..|....++...+++.++..++..+.. ++.......|.+++...
T Consensus 24 ~~~~~L~nGl~v~~~~~-~--~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t 100 (439)
T 1pp9_B 24 LEFTRLPNGLVIASLEN-Y--APASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTS 100 (439)
T ss_dssp CEEEECTTSCEEEEECC-C--CSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEECCCCcEEEEEeC-C--CceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEe
Confidence 45667899999999998 3 5899999999998877777788999999999876643 33444455688999999
Q ss_pred eCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC--CCCHH
Q psy8002 143 TKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER--AWSKT 220 (469)
Q Consensus 143 ~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~--~~~~~ 220 (469)
+.+++.+.+++++++++.+++.+.+.+.+| .+++++|+++|+.+++++++ ..++|...+.+.+...++++ .++..
T Consensus 101 ~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~~k~~v~~e~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~ 177 (439)
T 1pp9_B 101 TRENMAYTVECLRDDVDILMEFLLNVTTAP--EFRRWEVAALQPQLRIDKAV-ALQNPQAHVIENLHAAAYRNALANSLY 177 (439)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHH-HTTSHHHHHHHHHHHHHBSSGGGSCSS
T ss_pred cceEEEEEEEeehhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHhcCCCCCCcc
Confidence 999999999999999999999999999999 99999999999999999998 67889999998888888752 24455
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceE
Q psy8002 221 ELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLV 300 (469)
Q Consensus 221 ~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (469)
+..+.|+++|.+++++|++++|.+.++.++|+|| +.+++.++++.+++ ++... +.++ . ...+.+....
T Consensus 178 g~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~~~---~~~~----~---~~~~~~~~~~ 245 (439)
T 1pp9_B 178 CPDYRIGKVTPVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRGGL---GLSG----A---KAKYHGGEIR 245 (439)
T ss_dssp CCGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCCCC----CCC----C---CCCBCCEEEE
T ss_pred CCHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCCCC---CCCC----C---CCCCcCCeEE
Confidence 6788999999999999999999999999999999 99999999888765 54321 1110 0 0011222222
Q ss_pred EeccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhccC------------CCcc----cccccCcEEEeeeeecCCeeeE
Q psy8002 301 YETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPD------------EHTH----YQEQLGYIVVSGIRKSSGVQGL 364 (469)
Q Consensus 301 ~~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il~------------~~~f----tk~qLgY~V~s~~~~~~~~~~~ 364 (469)
+. .+..++.+.++|+.+..+.++.+.+.+++++|+ +++| +++||+|+|+++.....+.+.+
T Consensus 246 ~~---~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~ 322 (439)
T 1pp9_B 246 EQ---NGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLF 322 (439)
T ss_dssp EE---CCCSEEEEEEEEECCCTTSHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEE
T ss_pred ec---CCccceEEEEEecCCCCCchHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceE
Confidence 22 234567788888877677788888999999884 7788 6889999999988766655555
Q ss_pred EEEEecCCChhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhc-cccccccchHH
Q psy8002 365 RIIVQSDKHPLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITT-QQYNFDRANIE 442 (469)
Q Consensus 365 ~~~vqs~~~~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~-~~~~f~~~~~~ 442 (469)
.+.++ .+|+++.+.++.+++++.+.. .++|++||+++|+.++.++....++....+.++|..+.. +. .+..++.
T Consensus 323 ~i~~~--~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 398 (439)
T 1pp9_B 323 GFYTI--SQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGS--YTPPSTV 398 (439)
T ss_dssp EEEEE--EEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSS--CCCHHHH
T ss_pred EEEEE--eCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCC--CCCHHHH
Confidence 55554 377899999999999998877 479999999999999999998888998899999987664 43 3346788
Q ss_pred HHHHhcCCHHHHHHHHHhhcC
Q psy8002 443 VAYLKSVTKENVLKFYDKRNY 463 (469)
Q Consensus 443 ~~~l~~lT~edv~~~~~~~~~ 463 (469)
.+.|++||.+||++++++|+.
T Consensus 399 ~~~i~~vt~~dv~~~a~~~~~ 419 (439)
T 1pp9_B 399 LQQIDAVADADVINAAKKFVS 419 (439)
T ss_dssp HHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHhc
Confidence 999999999999999999985
No 8
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=9.3e-33 Score=279.48 Aligned_cols=377 Identities=9% Similarity=0.013 Sum_probs=303.0
Q ss_pred CeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccCceEEEee
Q psy8002 68 PTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALN-----EYSYDAKLAGLAWDLSN 142 (469)
Q Consensus 68 P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~ag~~~~~~~ 142 (469)
.+....+||+++|+.++. .|++.+.+.+..+...+++...+++.++..++..+.. ++....+..|.+++.+.
T Consensus 6 ~~~~~L~NGl~v~~~~~~---~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t 82 (475)
T 1hr6_A 6 FKLSSLANGLKVATSNTP---GHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTS 82 (475)
T ss_dssp CEEEECTTSCEEEEESCC---CSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEE
T ss_pred ceEEECCCCCEEEEEeCC---CCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEE
Confidence 455678999999998744 4899999999998877777888999999999887643 44445566788999998
Q ss_pred eCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC---CCCH
Q psy8002 143 TKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER---AWSK 219 (469)
Q Consensus 143 ~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~---~~~~ 219 (469)
+.+++.+.+++++++++.+|+.+.+.+.+| .+++++|+++|+.+++++++ ..++|...+.+.+...+++. .++.
T Consensus 83 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~er~~v~~e~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
T 1hr6_A 83 SRENLMYQASVFNQDVGKMLQLMSETVRFP--KITEQELQEQKLSAEYEIDE-VWMKPELVLPELLHTAAYSGETLGSPL 159 (475)
T ss_dssp CSSCEEEEEEECGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTSGGGSCS
T ss_pred ccCeEEEEEEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 889999999999999999999999999999 99999999999999999998 67899999999998888853 2445
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCce
Q psy8002 220 TELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNL 299 (469)
Q Consensus 220 ~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (469)
.+..+.|+.++.++|++|++++|.+.++.++|+| ++.+++.++++.+++.++.... +.+. +. ... .+...
T Consensus 160 ~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~~~~--~~~~---~~---~~~-~~~~~ 229 (475)
T 1hr6_A 160 ICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQSTHP--PITK---KV---AQY-TGGES 229 (475)
T ss_dssp SCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCCCCC--CCCC---CC---CCC-CCEEE
T ss_pred cCCHHHHhhcCHHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCCCCC--CCCC---CC---CCC-cCCeE
Confidence 6678999999999999999999999999999999 9999999999888776654311 1000 00 001 12111
Q ss_pred EEec---cCCCCCCeEEEEEEecCCcChHhHHHHHHHhhccC---------------CCcc----cccccCcEEEeeeee
Q psy8002 300 VYET---QNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPD---------------EHTH----YQEQLGYIVVSGIRK 357 (469)
Q Consensus 300 ~~~~---~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il~---------------~~~f----tk~qLgY~V~s~~~~ 357 (469)
.+.. ...+..++.+.++|+....+.++...+.+++.+|+ +++| ++++|+|.|+++...
T Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~ 309 (475)
T 1hr6_A 230 CIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHS 309 (475)
T ss_dssp EECCCCCCSSSCCCEEEEEEEECCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEE
T ss_pred EEecccccCCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccc
Confidence 2211 01344567788888855556667788888998875 7788 678999999999877
Q ss_pred cCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhh-cc
Q psy8002 358 SSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLIS----NMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEIT-TQ 432 (469)
Q Consensus 358 ~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~----~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~-~~ 432 (469)
..+.+.+.+++++ +|+.+.+.++.+++++.+... ++|++||+++|+.++.++....++....+.++|..+. .+
T Consensus 310 ~~~~g~~~i~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 387 (475)
T 1hr6_A 310 YSDSGIFGISLSC--IPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHG 387 (475)
T ss_dssp CSSCEEEEEEEEE--CGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHS
T ss_pred cCCCceEEEEEEe--CHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 6665556666654 788999999999999987665 5999999999999999999888898889999998754 44
Q ss_pred ccccccchHHHHHHhcCCHHHHHHHHHhhcCC
Q psy8002 433 QYNFDRANIEVAYLKSVTKENVLKFYDKRNYT 464 (469)
Q Consensus 433 ~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~ 464 (469)
. ..+ .++..+.|++||.+||++++++++.+
T Consensus 388 ~-~~~-~~~~~~~i~~vt~~dv~~~a~~~l~~ 417 (475)
T 1hr6_A 388 R-KIP-VNEMISKIEDLKPDDISRVAEMIFTG 417 (475)
T ss_dssp C-CCC-HHHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred C-CCC-HHHHHHHHHcCCHHHHHHHHHHHhhh
Confidence 3 344 56788999999999999999999987
No 9
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=8.9e-32 Score=266.85 Aligned_cols=377 Identities=10% Similarity=0.028 Sum_probs=296.5
Q ss_pred EEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccCceEEEeeeC
Q psy8002 70 ILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNE-----YSYDAKLAGLAWDLSNTK 144 (469)
Q Consensus 70 ~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~ag~~~~~~~~~ 144 (469)
.....||+++++.++.. .|.+.+.+.+..|...+.+...+++.++..++..+... +.-..+..|.+++...+.
T Consensus 4 ~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 4 EAELRNGLRVIAEVVPG--ARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEECTTSCEEEEEECTT--CSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred eEEcCCCCEEEEEECCC--CCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 34568999999999886 47899999999988777788899999999999876543 222223458889998888
Q ss_pred cceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-C--CCHHH
Q psy8002 145 YGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-A--WSKTE 221 (469)
Q Consensus 145 ~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~--~~~~~ 221 (469)
+...+.+++.+++++.+++.+.+.+ +| .+++++|+++|..++.+++. ..++|...+...+...+++. + ++..+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p--~f~~~~~~~ek~~v~~e~~~-~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 157 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RP--ALREEDFQTEKLVILEEIAR-YQDRPGFMAYEWARARFFQGHPLGNSVLG 157 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SC--CCCHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHTTCGGGCCSSC
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cC--CCCHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 9999999999999999999999999 99 99999999999999999998 67899999999998888753 2 44566
Q ss_pred HHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceEE
Q psy8002 222 LLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVY 301 (469)
Q Consensus 222 ~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 301 (469)
..+.|+.+|.+++++|++++|.+.++.++|+||++.+++.++++++++.++.. +.++.. . .. .+.+....+
T Consensus 158 ~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~----~~~~~~--~--~~-~~~~~~~~~ 228 (406)
T 3eoq_A 158 TRESITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEG----EAERAY--P--PL-TPAFGVEER 228 (406)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCC----CCCCCC--C--CC-CCCCEEEEE
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCC----CCCCCC--C--CC-CCCCceEEE
Confidence 78899999999999999999999999999999999999999999887766543 111100 0 00 112222222
Q ss_pred eccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhcc----CCCcc---cccccCcEEEeeeeecCCeeeEEEEEecCCCh
Q psy8002 302 ETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIP----DEHTH---YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHP 374 (469)
Q Consensus 302 ~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il----~~~~f---tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~ 374 (469)
.. +...++.+.+.|..+..+.++...+.+++.+| ++++| .+++|+|.|+++.....+.+.+.++++ .++
T Consensus 229 ~~--~~~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~--~~~ 304 (406)
T 3eoq_A 229 PY--EKARALYLVALFPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQ--ADP 304 (406)
T ss_dssp EC--TTCSSEEEEEEEECCCTTCTTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEE--ECG
T ss_pred ec--CCccceEEEEEecCCCCCCchHHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecccCCceEEEEEEE--eCc
Confidence 21 22256778888877666666777777777777 57788 338999999999887766555555554 356
Q ss_pred hHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHH
Q psy8002 375 LFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKEN 453 (469)
Q Consensus 375 ~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~ed 453 (469)
+.+.+.++.+.+++.+.. .++|++||+++|+.++.++....++....+.+++.....+. +.+..++..+.|++||.+|
T Consensus 305 ~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~vt~~d 383 (406)
T 3eoq_A 305 ARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTG-RYLSLEEVKARVQRVTSRE 383 (406)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHCCHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhCCHHH
Confidence 677777777777777655 68999999999999999999888888888887766554332 3456688899999999999
Q ss_pred HHHHHHhhcCCCC
Q psy8002 454 VLKFYDKRNYTES 466 (469)
Q Consensus 454 v~~~~~~~~~~~s 466 (469)
|++++++|+.++.
T Consensus 384 v~~~a~~~l~~~~ 396 (406)
T 3eoq_A 384 VNALLERGFLEKG 396 (406)
T ss_dssp HHHHHHTTTTTSC
T ss_pred HHHHHHHhcCccc
Confidence 9999999998753
No 10
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=2.3e-31 Score=265.19 Aligned_cols=374 Identities=11% Similarity=0.065 Sum_probs=293.0
Q ss_pred EEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhh-----hhcccccCceEEEeeeC
Q psy8002 70 ILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEY-----SYDAKLAGLAWDLSNTK 144 (469)
Q Consensus 70 ~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~-----~y~a~~ag~~~~~~~~~ 144 (469)
....+||+++++.++.. .|.+.+.+.+..+...+.+...+++.++..++..+.... .-..+..|.+++.+.+.
T Consensus 4 ~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 4 TMTLDNGVRIITEKMST--VRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp EEECTTSCEEEEEECTT--CSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred EEEcCCCCEEEEEECCC--CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 34568999999999876 488999999998887777788899999999998765432 22223457888888888
Q ss_pred cceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-C--CCHHH
Q psy8002 145 YGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-A--WSKTE 221 (469)
Q Consensus 145 ~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~--~~~~~ 221 (469)
+...+.+++.+++++.+++.+.+.+.+| .+++++|+++|+.++.++++ ..++|...+...+...+++. + ++..+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~ek~~v~~e~~~-~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 158 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHS--TFQKEELEKERKVVFEEIKM-VDDTPDDIVHDLLSSATYGKHSLGYPILG 158 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSB--CCCHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTSGGGSCTTC
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 8999999999999999999999999999 99999999999999999998 67899999999888888753 2 34556
Q ss_pred HHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceEE
Q psy8002 222 LLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVY 301 (469)
Q Consensus 222 ~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 301 (469)
..+.|+++|.+++++|++++|.+.++.++|+||++ +++.++++++++.|+......+.. . ....+. ...
T Consensus 159 ~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~-----~----~~~~~~-~~~ 227 (421)
T 3hdi_A 159 TVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGE-----K----PMFLPN-RIV 227 (421)
T ss_dssp CHHHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCC-----C----CCCCCC-EEE
T ss_pred CHHHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCC-----C----CCCCCc-eEE
Confidence 78999999999999999999999999999999999 999999988776665431110000 0 001121 222
Q ss_pred eccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhccC----CCcc----cccccCcEEEeeeeecCCeeeEEEEEecCCC
Q psy8002 302 ETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPD----EHTH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKH 373 (469)
Q Consensus 302 ~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il~----~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~ 373 (469)
.. .+..++.+.+.++.+..+.++...+.+++.+|+ +++| ++++|+|.|+++.....+.+.+.+++. .+
T Consensus 228 ~~--~~~~q~~v~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~--~~ 303 (421)
T 3hdi_A 228 RK--KETEQAHLCLGYPGLPIGDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAG--TG 303 (421)
T ss_dssp EE--CCCSEEEEEEEEECCCTTCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEE--EE
T ss_pred ec--CCCCceEEEEEEecCCCCCchHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEE--eC
Confidence 21 334566777788776666677777777777765 6788 677999999998877666555555443 46
Q ss_pred hhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHH-hhhccccccccchHHHHHHhcCCH
Q psy8002 374 PLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWL-EITTQQYNFDRANIEVAYLKSVTK 451 (469)
Q Consensus 374 ~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~-~i~~~~~~f~~~~~~~~~l~~lT~ 451 (469)
|+.+.+.++.+.+++.+.. .++|++||+++|..+++++....++....+..+.. .+..+. .+..+...+.|++||.
T Consensus 304 ~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~vt~ 381 (421)
T 3hdi_A 304 HDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKK--HRSLDEMIEQINAVQK 381 (421)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CCCHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHcCCH
Confidence 6778888888888887765 58999999999999999999888888777777644 343333 3445788999999999
Q ss_pred HHHHHHHHhhcCCCC
Q psy8002 452 ENVLKFYDKRNYTES 466 (469)
Q Consensus 452 edv~~~~~~~~~~~s 466 (469)
+||++++++|+ ++.
T Consensus 382 ~dv~~~a~~~~-~~~ 395 (421)
T 3hdi_A 382 QDVSRLAKILL-SAS 395 (421)
T ss_dssp HHHHHHHHHHT-TSC
T ss_pred HHHHHHHHHHc-ccC
Confidence 99999999999 654
No 11
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.98 E-value=6.1e-30 Score=256.73 Aligned_cols=381 Identities=11% Similarity=0.065 Sum_probs=285.0
Q ss_pred eEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccCceEEEeee
Q psy8002 69 TILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNE-----YSYDAKLAGLAWDLSNT 143 (469)
Q Consensus 69 ~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~ag~~~~~~~~ 143 (469)
.....+||++++++++.. .|.+.+.+.+..|...+.+...+++.++..++..+... +.-..+..|.+++...+
T Consensus 8 ~~~~L~NGl~v~~~~~~~--~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t~ 85 (445)
T 3ami_A 8 FETTLPNGLKVVVREDHR--APTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTT 85 (445)
T ss_dssp EEEECTTSCEEEEEECTT--SSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEEC
T ss_pred EEEECCCCCEEEEEECCC--CCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccccC
Confidence 455689999999999765 57899999998887666667789999999998766432 22222335678888888
Q ss_pred CcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-C--CCHH
Q psy8002 144 KYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-A--WSKT 220 (469)
Q Consensus 144 ~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~--~~~~ 220 (469)
.+...+.+++.+++++.+|+.+.+.+.+| .++++.|+++|..++.+++....++|...+.+.+...++++ + ++..
T Consensus 86 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~ 163 (445)
T 3ami_A 86 RDYTAYYQQVPSSRLSDVMGLEADRMANL--VVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVI 163 (445)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTT
T ss_pred CCeEEEEEECCHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCC
Confidence 88888899999999999999999999999 99999999999999999983267789989888888888753 2 3445
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCc-e
Q psy8002 221 ELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSN-L 299 (469)
Q Consensus 221 ~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 299 (469)
+..+.|+++|.+++++|++++|.+.++.++|+||++.+++.++++++++.++.... +.+. .. ....+.+.. .
T Consensus 164 G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~--~~~~----~~-~~~~~~~~~~~ 236 (445)
T 3ami_A 164 GWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEA--PARK----QQ-GEPQQAGVRRV 236 (445)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCC--CCCC----CC-CCCCCCSCEEE
T ss_pred CCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCC--CCCC----CC-CCCCCCCceEE
Confidence 67899999999999999999999999999999999999999999887776654311 1100 00 000112222 2
Q ss_pred EEeccCCCCCCeEEEEEEecCC---cC-hHhHHHHHHHhhccC----CCcc----cccccCcEEEeeeee-cCC-eeeEE
Q psy8002 300 VYETQNAVHKSSCIEAYYQCGV---QE-LRDNVLLELFYPIPD----EHTH----YQEQLGYIVVSGIRK-SSG-VQGLR 365 (469)
Q Consensus 300 ~~~~~~~~~~ns~v~~~~q~~~---~~-~~~~~~~~ll~~il~----~~~f----tk~qLgY~V~s~~~~-~~~-~~~~~ 365 (469)
.+. . ...++.+.+.|..+. .+ .++...+.+++.+|+ +++| .+++++|.|+++... ..+ .+.+.
T Consensus 237 ~~~-~--~~~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~ 313 (445)
T 3ami_A 237 TVK-A--PAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFI 313 (445)
T ss_dssp EEE-E--ECSSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEE
T ss_pred EEe-c--CCCccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEE
Confidence 222 1 234566778887766 55 677777788887776 7888 577899999988764 233 34444
Q ss_pred EEEecCCChh-HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHH
Q psy8002 366 IIVQSDKHPL-FVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEV 443 (469)
Q Consensus 366 ~~vqs~~~~~-~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~ 443 (469)
+.++. .++ .+++.++.+.+++.+.. .+++++||+++|+.++.++....++....+..+......+ ...+..+...
T Consensus 314 i~~~~--~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 390 (445)
T 3ami_A 314 LEGVP--SKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLG-LSWRDDDRFY 390 (445)
T ss_dssp EEEEE--CTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTT-CCTTHHHHHH
T ss_pred EEEEE--CCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcC-CChHHHHHHH
Confidence 44433 223 24555555555555544 6899999999999999999988888777776665555443 2456667888
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCC
Q psy8002 444 AYLKSVTKENVLKFYDKRNYTES 466 (469)
Q Consensus 444 ~~l~~lT~edv~~~~~~~~~~~s 466 (469)
+.|++||.+||++++++||.++.
T Consensus 391 ~~i~~vt~~dv~~~a~~~l~~~~ 413 (445)
T 3ami_A 391 QQLRSVTAAEVKAAAARLLTDDT 413 (445)
T ss_dssp HHHHTCCHHHHHHHHHTTSCSTT
T ss_pred HHHHcCCHHHHHHHHHHHcCcCC
Confidence 99999999999999999998754
No 12
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.97 E-value=5.7e-29 Score=249.55 Aligned_cols=384 Identities=9% Similarity=0.009 Sum_probs=288.4
Q ss_pred CeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhh-----cccccCceEEEee
Q psy8002 68 PTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSY-----DAKLAGLAWDLSN 142 (469)
Q Consensus 68 P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y-----~a~~ag~~~~~~~ 142 (469)
++....+||+++++.++.. .+.+.+.+.+..+...+++...+++.++..++..+.....+ .....|.+++...
T Consensus 7 ~~~~~L~NGl~v~~~~~~~--~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (443)
T 1hr6_B 7 TRTSKLPNGLTIATEYIPN--TSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYT 84 (443)
T ss_dssp CEEEECTTSCEEEEEECSS--CSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEECCCCCEEEEEECCC--CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 4556789999999998664 34788999998887666666788999999998765433211 1223477888888
Q ss_pred eCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-C--CCH
Q psy8002 143 TKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-A--WSK 219 (469)
Q Consensus 143 ~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~--~~~ 219 (469)
+.+...+.+++.+++++.+++.+.+.+.+| .+++++|+++|+.++.+++. ..++|...+...+...+++. + ++.
T Consensus 85 ~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~e~~~v~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (443)
T 1hr6_B 85 SRENTVYYAKSLQEDIPKAVDILSDILTKS--VLDNSAIERERDVIIRESEE-VDKMYDEVVFDHLHEITYKDQPLGRTI 161 (443)
T ss_dssp CSSEEEEEEEEEGGGHHHHHHHHHHHHHSB--CCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTSGGGSCS
T ss_pred CCCeEEEEEEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHh-hhCChHHHHHHHHHHHhcCCCCCCCCC
Confidence 888899999999999999999999999999 99999999999999999998 67899999998888888753 2 233
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCce
Q psy8002 220 TELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNL 299 (469)
Q Consensus 220 ~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (469)
.+..+.|++++.+++++|++++|.+.++.++|+||++.+++.++++++++.++......+.+. ........ .+...
T Consensus 162 ~g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~---~~~~~~~~-~~~~~ 237 (443)
T 1hr6_B 162 LGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGS---PRGPLPVF-CRGER 237 (443)
T ss_dssp SCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTS---CCSSCCCC-CCEEE
T ss_pred cCCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCccc---ccCCCCCC-CCCeE
Confidence 467788999999999999999999999999999999999999999888776654311111100 00000001 12222
Q ss_pred EEeccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhccC-------------CCcc----cccccCcEEEeeeeecCCee
Q psy8002 300 VYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPD-------------EHTH----YQEQLGYIVVSGIRKSSGVQ 362 (469)
Q Consensus 300 ~~~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il~-------------~~~f----tk~qLgY~V~s~~~~~~~~~ 362 (469)
.+. .+..+++.+.+.|..+..+.++...+.+++.+|+ +++| ++++|+|.++++.....+.+
T Consensus 238 ~~~--~~~~~~~~v~~~~~~~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g 315 (443)
T 1hr6_B 238 FIK--ENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSG 315 (443)
T ss_dssp EEE--CTTCSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCE
T ss_pred Eec--cCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCce
Confidence 222 2333566777788876666677777888888774 6677 58899999999887655544
Q ss_pred eEEEEEecCCC--hhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhh-hcccccccc
Q psy8002 363 GLRIIVQSDKH--PLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEI-TTQQYNFDR 438 (469)
Q Consensus 363 ~~~~~vqs~~~--~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i-~~~~~~f~~ 438 (469)
.+.+++. ++ |+.+.+.++.+.+++.+.. .++|++||+++|..++.++....++....+..+...+ ..+. ..+
T Consensus 316 ~~~i~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~- 391 (443)
T 1hr6_B 316 LWGMYIV--TDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGK-RLS- 391 (443)
T ss_dssp EEEEEEE--EETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSS-CCC-
T ss_pred EEEEEEE--ecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC-cCC-
Confidence 4555544 34 6677777888877776655 4699999999999999999988787777777666554 3333 344
Q ss_pred chHHHHHHhcCCHHHHHHHHHhhcCCCC
Q psy8002 439 ANIEVAYLKSVTKENVLKFYDKRNYTES 466 (469)
Q Consensus 439 ~~~~~~~l~~lT~edv~~~~~~~~~~~s 466 (469)
.++..+.|++||.+||++++++|+.++.
T Consensus 392 ~~~~~~~i~~vt~~dv~~~a~~~l~~~~ 419 (443)
T 1hr6_B 392 PEEVFEQVDKITKDDIIMWANYRLQNKP 419 (443)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 4677899999999999999999998753
No 13
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.97 E-value=5.9e-29 Score=249.62 Aligned_cols=381 Identities=11% Similarity=0.015 Sum_probs=286.8
Q ss_pred CeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhh-----cccccCceEEEee
Q psy8002 68 PTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSY-----DAKLAGLAWDLSN 142 (469)
Q Consensus 68 P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y-----~a~~ag~~~~~~~ 142 (469)
.+.....||+++++.++. .|.+.+.+.+..+...+.+...+++.++..++..+.....+ ..+..|.+++...
T Consensus 14 ~~~~~L~NGl~v~~~~~~---~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t 90 (446)
T 1pp9_A 14 TQVSQLDNGLRVASEQSS---QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYS 90 (446)
T ss_dssp CEEEECTTCCEEEEEECS---CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEE
T ss_pred ceEEECCCCCEEEEEeCC---CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEE
Confidence 455667899999997754 37889999888887766667789999999999766433221 1223477888888
Q ss_pred eCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-C--CCH
Q psy8002 143 TKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-A--WSK 219 (469)
Q Consensus 143 ~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~--~~~ 219 (469)
+.++..+.+++.+++++.+++.+.+.+.+| .+++++|+++|+.++.+++. ..++|...+...+...+++. + ++.
T Consensus 91 ~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~ek~~v~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (446)
T 1pp9_A 91 TREHTAYYIKALSKDLPKAVELLADIVQNC--SLEDSQIEKERDVILQELQE-NDTSMRDVVFNYLHATAFQGTPLAQSV 167 (446)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHHB--CCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTSGGGSCS
T ss_pred cCCeEEEEEEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHh-hhcCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 888999999999999999999999999999 99999999999999999998 67899999988888877743 2 234
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCce
Q psy8002 220 TELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNL 299 (469)
Q Consensus 220 ~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (469)
.+..+.|++++.+++++|++++|.+.++.++|+||++.+++.++++++++.++......+.+ .+. .....+...
T Consensus 168 ~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~---~~~---~~~~~~~~~ 241 (446)
T 1pp9_A 168 EGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVP---TLS---PCRFTGSQI 241 (446)
T ss_dssp SCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCC---CCC---CCCCCCEEE
T ss_pred cCCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccc---cCC---CCCCCCceE
Confidence 56788899999999999999999999999999999999999999988776665431111000 000 000112222
Q ss_pred EEeccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhccC-------------CCcc---cccccCcEEEeeeeecCCeee
Q psy8002 300 VYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPD-------------EHTH---YQEQLGYIVVSGIRKSSGVQG 363 (469)
Q Consensus 300 ~~~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il~-------------~~~f---tk~qLgY~V~s~~~~~~~~~~ 363 (469)
.+. .+..+++.+.+.+..+..+.++...+.+++.+|+ +++| .+++++|.++++.....+.+.
T Consensus 242 ~~~--~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~~~~g~ 319 (446)
T 1pp9_A 242 CHR--EDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGL 319 (446)
T ss_dssp EEE--ETTSSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEECSSCEE
T ss_pred EEe--cCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEecccCCCCeE
Confidence 222 1233466777788766556667777788887774 5677 567899999988766555444
Q ss_pred EEEEEecCCChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhh-hccccccccchHH
Q psy8002 364 LRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEI-TTQQYNFDRANIE 442 (469)
Q Consensus 364 ~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i-~~~~~~f~~~~~~ 442 (469)
+.++++ .+|+.+.+.++.+.+++.+...++|++||+++|..++.++....++....+..+...+ ..+. ..+ .++.
T Consensus 320 ~~i~~~--~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~ 395 (446)
T 1pp9_A 320 LGAHFV--CDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGR-RIP-LAEW 395 (446)
T ss_dssp EEEEEE--ECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSS-CCC-HHHH
T ss_pred EEEEEE--ECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCC-CCC-HHHH
Confidence 555554 3566777777777777766555699999999999999999877777777777766554 3333 334 4677
Q ss_pred HHHHhcCCHHHHHHHHHhhcCCCC
Q psy8002 443 VAYLKSVTKENVLKFYDKRNYTES 466 (469)
Q Consensus 443 ~~~l~~lT~edv~~~~~~~~~~~s 466 (469)
.+.|+++|.+||++++++|+.++.
T Consensus 396 ~~~i~~vt~edv~~~a~~~~~~~~ 419 (446)
T 1pp9_A 396 ESRIAEVDARVVREVCSKYFYDQC 419 (446)
T ss_dssp HHHHHTCCHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHcCCCC
Confidence 889999999999999999998754
No 14
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.96 E-value=8.9e-28 Score=243.33 Aligned_cols=376 Identities=8% Similarity=-0.034 Sum_probs=266.4
Q ss_pred eEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhc---------ccccCceEE
Q psy8002 69 TILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYD---------AKLAGLAWD 139 (469)
Q Consensus 69 ~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~---------a~~ag~~~~ 139 (469)
+.....||+++|+.++..+..|++.+.+.+..|...+.+...+++.++..|+..+....... ....|.+++
T Consensus 27 ~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~~~n 106 (492)
T 3go9_A 27 QQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERPLPP 106 (492)
T ss_dssp EEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSCCCS
T ss_pred EEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCcc
Confidence 45667899999999987766789999999998888788888999999999998875432111 112455667
Q ss_pred EeeeCcceEEEEeecC---ccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-
Q psy8002 140 LSNTKYGMMLGISGYS---HKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER- 215 (469)
Q Consensus 140 ~~~~~~g~~i~~~G~s---~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~- 215 (469)
.+.+.+...+.+++.+ ++++..|+.+.+.+.+| .|++++|+++|..++++++. ..++|...+.. ..++..
T Consensus 107 a~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~er~~~~~~~~~-~~~~~~~~~~~---~~~~~~~ 180 (492)
T 3go9_A 107 AITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNL--AVSEQTVNAALNTATDPIAT-FPQNIQEPWWR---YRLKGSS 180 (492)
T ss_dssp EEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHTCSSCCEEE-SSSCTTCHHHH---HHTTTST
T ss_pred eEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHh-cccchhhHHHH---HHhccCC
Confidence 7777788889999998 67999999999999999 99999999999877777766 44456544432 122211
Q ss_pred --CCCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeec
Q psy8002 216 --AWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKI 293 (469)
Q Consensus 216 --~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 293 (469)
.++.. .+.++.+|.+|+++|++++|.+.++.++|+||++.+++.++++++++.|+..... +.+. +. ...
T Consensus 181 ~~~~~~~--~~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~-~~~~---~~---~~~ 251 (492)
T 3go9_A 181 LIGHDPG--QPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTA-PAAV---AT---LAP 251 (492)
T ss_dssp TTTCCTT--CCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSS-CCCC---CC---CCC
T ss_pred cccCCCc--hhhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCC-CCCC---CC---CCC
Confidence 11221 2678999999999999999999999999999999999999999887777643210 1100 00 000
Q ss_pred CCCCceEEeccCCCCCCeEEEEEEecCCcChH------hHHHHHHHhhccCCCcc----c--ccccCcEEEeeeeecCCe
Q psy8002 294 PEKSNLVYETQNAVHKSSCIEAYYQCGVQELR------DNVLLELFYPIPDEHTH----Y--QEQLGYIVVSGIRKSSGV 361 (469)
Q Consensus 294 ~~~~~~~~~~~~~~~~ns~v~~~~q~~~~~~~------~~~~~~ll~~il~~~~f----t--k~qLgY~V~s~~~~~~~~ 361 (469)
..+....... ....++.+.+.|..+..... ++..+.+++.+|+++++ + +++++|.++++.....+.
T Consensus 252 ~~~~~~~~~~--~~~~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg~~L~~~lre~~~~gl~y~~~s~~~~~~~~ 329 (492)
T 3go9_A 252 LPPEPVSLMN--EQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRAQ 329 (492)
T ss_dssp CCSSCEEEEE--SSCSSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETTEEE
T ss_pred CCCCceEEEc--CCCCCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchhhhhhcc
Confidence 1122222221 23356778888776543322 33445788888888877 4 778999999887544432
Q ss_pred eeEEEEEecCCChhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCC-----CChhhHHHHhHHhhhcccc-
Q psy8002 362 QGLRIIVQSDKHPLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKP-----KKLSGLSSRFWLEITTQQY- 434 (469)
Q Consensus 362 ~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~-----~sl~~~~~~~w~~i~~~~~- 434 (469)
..|++++ .++.+++.++.+.+++.+.. .++|++||+++|+.+++++.... .+....++.++..+..+..
T Consensus 330 --~~~~i~~--~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (492)
T 3go9_A 330 --CAIHLNT--PVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVD 405 (492)
T ss_dssp --EEEEEEE--CGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCC
T ss_pred --eEEEEEc--CcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 2345555 46777777777777777665 69999999999999999987642 2344556666555444321
Q ss_pred --ccccchHHHHHHhcCCHHHHHHHHHhhcCCC
Q psy8002 435 --NFDRANIEVAYLKSVTKENVLKFYDKRNYTE 465 (469)
Q Consensus 435 --~f~~~~~~~~~l~~lT~edv~~~~~~~~~~~ 465 (469)
.-+..+...+.|++||.+||++++++|+.++
T Consensus 406 ~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~ 438 (492)
T 3go9_A 406 IAPEQYQKLRQAFLSGLTLAELNRELKQQLSQD 438 (492)
T ss_dssp BCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCC
Confidence 1223334456799999999999999999864
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.95 E-value=1.2e-27 Score=262.98 Aligned_cols=387 Identities=9% Similarity=-0.004 Sum_probs=281.4
Q ss_pred CCCCCCCCC--ccCCCCCCCCCCCeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-h
Q psy8002 47 PNEFIATDF--SLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKD-A 123 (469)
Q Consensus 47 ~N~fip~~f--~~~~~~~~~~~~P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~-~ 123 (469)
.+.++|... ++.. .....|..+...||++||++++ |..|.+++.+.+..+.. +++...++.|++.++.. +
T Consensus 533 ~~~~~p~~~~~~i~~---~~~~~~~~~~~~nG~~v~~~~~--~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~G 605 (995)
T 2fge_A 533 ALRCVPSLNLGDIPK---EPTYVPTEVGDINGVKVLRHDL--FTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMG 605 (995)
T ss_dssp HHTTSCCCCGGGSCS---SCCCCCCEEEESSSSEEEEEEC--CCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSC
T ss_pred HHHhcCCCCHhhcCc---cCCCCCceeeecCCceEEEEec--CCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCC
Confidence 366888765 3321 1234677777899999999996 66789999888887543 55667788999999887 6
Q ss_pred hhhhhhc-------ccccCceE-EE--eeeC-----cceEEEEeecCccHHHHHHHHHHHHccCCCCCChH-HHHHHHHH
Q psy8002 124 LNEYSYD-------AKLAGLAW-DL--SNTK-----YGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPK-RYEIIKEQ 187 (469)
Q Consensus 124 l~e~~y~-------a~~ag~~~-~~--~~~~-----~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~-~f~~~k~~ 187 (469)
+....|. +..+|+++ ++ +.+. .++.+++++++++++.+++++.+.+.+| .++++ +|+++|++
T Consensus 606 t~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p--~f~~~~~~~~~~~~ 683 (995)
T 2fge_A 606 TKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEV--QFTDQQRFKQFVSQ 683 (995)
T ss_dssp CSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHC--CSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCceEeeccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcC--CCCcHHHHHHHHHH
Confidence 6554443 24456677 44 4434 7899999999999999999999999999 99999 99999999
Q ss_pred HHHHhccccccChHHHHHHHHHHhccCCCCC------------HHHHH----HHccCCCHHHHHHHHHHHHHhHhhheee
Q psy8002 188 YYRGLKNFEAEQPYQHAIYSISLCLFERAWS------------KTELL----ESLDGITREKLVEFSHDLLSKMFIEALI 251 (469)
Q Consensus 188 ~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~------------~~~~~----~~l~~it~edl~~f~~~~~~~~~~~~lv 251 (469)
++.++++...+++...|...+..++.+..+- ..+.. +.++.+ .++|++|++++|.+.+++++|
T Consensus 684 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v 762 (995)
T 2fge_A 684 SRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNM 762 (995)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEE
T ss_pred HHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEE
Confidence 9999999555678888888887765432210 11111 557889 999999999999999999999
Q ss_pred ecCCCh-HHHHHHHHHHHHHH-hccccCCCCCcccccccceeecCCCCce-EEeccCCCCCCeEEEEEEecCCcChHhHH
Q psy8002 252 HGNANK-QVGLSIVKMLEEKL-QTKLKAKPLLPSQLLRFREIKIPEKSNL-VYETQNAVHKSSCIEAYYQCGVQELRDNV 328 (469)
Q Consensus 252 ~Gn~~~-~~a~~l~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~ns~v~~~~q~~~~~~~~~~ 328 (469)
+||++. +++.++++.+++.+ +.... +.. ....+.+... .... +.. .+.+...+.....+.++.+
T Consensus 763 ~Gd~~~~~~~~~~~~~~~~~l~p~~~~--~~~--------~~~~~~~~~~~~~~~--~~~-v~~~~~~~~~~~~~~~d~~ 829 (995)
T 2fge_A 763 TADGKSLTNVEKSVAKFLDLLPENPSG--GLV--------TWDGRLPLRNEAIVI--PTQ-VNYVGKAGNIYSTGYELDG 829 (995)
T ss_dssp EECHHHHHHHHHHHHHHHHTSCSSCSS--CSC--------CCCCCCCCCCEEEEC--SCS-SBEEEEEEEGGGGTCCCCT
T ss_pred EeCHHHHHHHHHHHHHHHHhhCccCCC--CCC--------cccccCCccceEEEe--cCc-eEEEEEecCCCCCCCcccH
Confidence 999995 88888888877766 53211 100 0112222111 1111 221 2222222222346667888
Q ss_pred HHHHHhhccC-CCcc---cccccCcEEEeeeeecCCeee-EEEEEecCCChhHHHHHHHHHHHHHHHHH-cCCCHHHHHH
Q psy8002 329 LLELFYPIPD-EHTH---YQEQLGYIVVSGIRKSSGVQG-LRIIVQSDKHPLFVDSRIEAFLAQMKDLI-SNMPDEEFQS 402 (469)
Q Consensus 329 ~~~ll~~il~-~~~f---tk~qLgY~V~s~~~~~~~~~~-~~~~vqs~~~~~~l~~~I~~fl~~~~~~l-~~~seeef~~ 402 (469)
.+.+++++|+ +++| -++|++|+++++... .|..+ +. |..+| .+.++++.|.+.+.... .++|++||++
T Consensus 830 al~vl~~iLg~~~L~~~iRe~g~aYg~~s~~~~-~G~~~~~~----s~~dp-~~~~~~~~~~~~~~~l~~~~~te~el~~ 903 (995)
T 2fge_A 830 SAYVISKHISNTWLWDRVRVSGGAYGGFCDFDS-HSGVFSYL----SYRDP-NLLKTLDIYDGTGDFLRGLDVDQETLTK 903 (995)
T ss_dssp HHHHHHHHHHHTHHHHHTTTTTCCSEEEEEEET-TTTEEEEE----EESBS-CSHHHHHHHHTHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHCCCccHHHhhhcCCCcccceEeCC-CccEEEEE----EEcCC-CHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999997 4566 339999999999876 45444 33 22344 45677788877776333 3899999999
Q ss_pred HHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhcCC
Q psy8002 403 HKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYT 464 (469)
Q Consensus 403 ~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~ 464 (469)
+|.++++++ ..+.++.+++.++|..+..| +.++..+++.+.|.+||++||++++++|+.+
T Consensus 904 ak~~li~~~-~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~ 963 (995)
T 2fge_A 904 AIIGTIGDV-DSYQLPDAKGYSSLLRHLLG-VTDEERQRKREEILTTSLKDFKDFAQAIDVV 963 (995)
T ss_dssp HHHHHHHHH-TCCCCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-cCCCCHHHHHHHHHHHHHcC-cCHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999 55788999999999888776 4678888999999999999999999999864
No 16
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.91 E-value=1.2e-22 Score=222.22 Aligned_cols=382 Identities=10% Similarity=-0.003 Sum_probs=270.6
Q ss_pred eEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhcccccCceEEEee
Q psy8002 69 TILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNE------YSYDAKLAGLAWDLSN 142 (469)
Q Consensus 69 ~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e------~~y~a~~ag~~~~~~~ 142 (469)
+.....||+++++.+|.. .|++.+.+.+..|...+.+...+++.++..|+..+... +.-..+..|.+++.+.
T Consensus 22 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T 99 (939)
T 1q2l_A 22 QAIRLDNGMVVLLVSDPQ--AVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNAST 99 (939)
T ss_dssp EEEEETTSCEEEEEECTT--CSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEECCC--CCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEE
Confidence 456789999999999886 57899999999888777777889999999999876432 2222244588888888
Q ss_pred eCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-C--CCH
Q psy8002 143 TKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-A--WSK 219 (469)
Q Consensus 143 ~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~--~~~ 219 (469)
+.+...+.++..++.++..|+.+.+.+.+| .++++.|+++|..+..+++. ..++|...+...+...+++. + +..
T Consensus 100 ~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p--~f~~~~~~~Er~~v~~E~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~ 176 (939)
T 1q2l_A 100 APYRTAFYLEVENDALPGAVDRLADAIAEP--LLDKKYAERERNAVNAELTM-ARTRDGMRMAQVSAETINPAHPGSKFS 176 (939)
T ss_dssp CSSCEEEEEEECGGGHHHHHHHHHHHHHCB--CCCSTTHHHHHHHHHHHHHH-HTTSHHHHHHHHHHHSSCTTSGGGSCC
T ss_pred CCCcEEEEEEeCHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHhcCCCCCCccCC
Confidence 888888888889999999999999999999 99999999999999999998 67788888888888888753 2 344
Q ss_pred HHHHHHccC----CCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCC
Q psy8002 220 TELLESLDG----ITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPE 295 (469)
Q Consensus 220 ~~~~~~l~~----it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 295 (469)
.|..+.|+. ++.+++++|++++|++.++.++|+||++.+++.++++++++.++......+.+. .+ .. .+.
T Consensus 177 ~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~----~~-~~-~~~ 250 (939)
T 1q2l_A 177 GGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEIT----VP-VV-TDA 250 (939)
T ss_dssp SCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCC----SC-SC-CGG
T ss_pred CCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCC----CC-CC-CHH
Confidence 677889998 999999999999999999999999999999999999887776654321111100 00 00 011
Q ss_pred CCceEEeccCCCCCCeEEEEEEecCCcChH-hHHHHHHHhhcc----CCCcc---cccccCcEEEeeeeec--CCeeeEE
Q psy8002 296 KSNLVYETQNAVHKSSCIEAYYQCGVQELR-DNVLLELFYPIP----DEHTH---YQEQLGYIVVSGIRKS--SGVQGLR 365 (469)
Q Consensus 296 ~~~~~~~~~~~~~~ns~v~~~~q~~~~~~~-~~~~~~ll~~il----~~~~f---tk~qLgY~V~s~~~~~--~~~~~~~ 365 (469)
.....+.. .+....+.+.+.|..+..... +...+.+++.+| ++++| .+++|+|.++++.... .+.+.+.
T Consensus 251 ~~~~~~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~~~~~~~g~f~ 329 (939)
T 1q2l_A 251 QKGIIIHY-VPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLA 329 (939)
T ss_dssp GSSEEEEE-CCSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESSTTSSEEEEE
T ss_pred HcCEEEEE-EeCCCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCCCCCcHHHHHHHcCCchheeeccccccCCCceEEE
Confidence 11122221 133345667777776543222 333344455444 56777 6678999999875322 3334444
Q ss_pred EEEecCC-ChhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCC-CChhhHHHHhHHhhhccccccccchHH
Q psy8002 366 IIVQSDK-HPLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKP-KKLSGLSSRFWLEITTQQYNFDRANIE 442 (469)
Q Consensus 366 ~~vqs~~-~~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~-~sl~~~~~~~w~~i~~~~~~f~~~~~~ 442 (469)
+.+.... ..+++++.+..+.+++.+.. .++++++|+++|+.+..++.... .+....+..+...+.. +..+.....
T Consensus 330 i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 407 (939)
T 1q2l_A 330 ISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIR--VPVEHTLDA 407 (939)
T ss_dssp EEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTT--SCGGGTTTT
T ss_pred EEEEEChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhc--CCHHHHhcC
Confidence 4444221 11466666677666666554 68999999999999999887654 4444455555444432 223332333
Q ss_pred HHHHhcCCHHHHHHHHHhhcCCC
Q psy8002 443 VAYLKSVTKENVLKFYDKRNYTE 465 (469)
Q Consensus 443 ~~~l~~lT~edv~~~~~~~~~~~ 465 (469)
...++++|.++|.++++. +.++
T Consensus 408 ~~~i~~vt~~~i~~~~~~-l~~~ 429 (939)
T 1q2l_A 408 VNIADRYDAKAVKERLAM-MTPQ 429 (939)
T ss_dssp TTCCCCCCHHHHHHHHHH-CSGG
T ss_pred chhhhccCHHHHHHHHHh-cCHH
Confidence 456899999999999987 5544
No 17
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.88 E-value=7.1e-21 Score=209.23 Aligned_cols=382 Identities=12% Similarity=0.014 Sum_probs=264.6
Q ss_pred eEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhh------hhcccccCceEEEee
Q psy8002 69 TILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEY------SYDAKLAGLAWDLSN 142 (469)
Q Consensus 69 ~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~------~y~a~~ag~~~~~~~ 142 (469)
+.....||+++++.+|.. .|++.+.+.+..+...+.+...+++.++..++..+.... .-.....|.+++...
T Consensus 36 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T 113 (990)
T 3cww_A 36 RGLELANGIKVLLISDPT--TDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFT 113 (990)
T ss_dssp EEEEETTCCEEEEEECTT--CSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEE
T ss_pred EEEEeCCCCEEEEEECCC--CCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEE
Confidence 456789999999999886 579999999998887767778899999999998764332 111233577788887
Q ss_pred eCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-C--CCH
Q psy8002 143 TKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-A--WSK 219 (469)
Q Consensus 143 ~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~--~~~ 219 (469)
+.+.....+...++.++.+|+.+.+.+.+| .++++.|+++|..+..+++. ..++|...+...+..++++. + +..
T Consensus 114 ~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p--~f~~~~~~~E~~~V~~E~~~-~~~~~~~~~~~~~~~~~~~~~py~~~~ 190 (990)
T 3cww_A 114 SGEHTNYYFDVSHEHLEGALDRFAQFFLSP--LFDESAKDREVNAVDSEHEK-NVMNDAWRLFQLEKATGNPKHPFSKFG 190 (990)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHGGGTCB--CCCHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHTSCTTSGGGCCC
T ss_pred CCCceEEEEEeCHHHHHHHHHHHHHHHhCc--CCCHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHhcCCCCCcccCC
Confidence 778888888889999999999999999999 99999999999999999988 66778777877777777643 2 344
Q ss_pred HHHHHHccCC-------CHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceee
Q psy8002 220 TELLESLDGI-------TREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIK 292 (469)
Q Consensus 220 ~~~~~~l~~i-------t~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 292 (469)
.|..+.|..+ +.++|++|++++|++.++.++|+||++.+++.++++++++.++.... +.+ ....+ ...
T Consensus 191 ~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~--~~~--~~~~~-~~~ 265 (990)
T 3cww_A 191 TGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNV--PLP--EFPEH-PFQ 265 (990)
T ss_dssp SCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCC--CCC--CCCSC-SSC
T ss_pred CCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCC--CCC--CCCCC-CCC
Confidence 5667788877 99999999999999999999999999999999999988776654311 111 00000 000
Q ss_pred cCCCCceEEeccCCCCCCeEEEEEEecCCcC-hHhHHHHHHHhhccC----CCcc---cccccCcEEEeeeee-cCCeee
Q psy8002 293 IPEKSNLVYETQNAVHKSSCIEAYYQCGVQE-LRDNVLLELFYPIPD----EHTH---YQEQLGYIVVSGIRK-SSGVQG 363 (469)
Q Consensus 293 l~~~~~~~~~~~~~~~~ns~v~~~~q~~~~~-~~~~~~~~ll~~il~----~~~f---tk~qLgY~V~s~~~~-~~~~~~ 363 (469)
.+.....+... +....+.+.+.|..+... ..+...+.+++.+|+ +.+| .+++++|.++++... ..+.+.
T Consensus 266 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~~~~~~~ 343 (990)
T 3cww_A 266 EEHLKQLYKIV--PIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGARGFMF 343 (990)
T ss_dssp GGGSSEEEEEC--CSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEEETTEEE
T ss_pred hHHcCeEEEEE--ECCCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCCCcHHHHHHHCCCcceeeeccccCCCCccE
Confidence 00001112211 222456677778776543 234445566666664 2345 667999999988764 344444
Q ss_pred EEEEEecCC-ChhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcC-CCChhhHHHHhHHhhhccccccccch
Q psy8002 364 LRIIVQSDK-HPLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEK-PKKLSGLSSRFWLEITTQQYNFDRAN 440 (469)
Q Consensus 364 ~~~~vqs~~-~~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~-~~sl~~~~~~~w~~i~~~~~~f~~~~ 440 (469)
+.+.++... ..+.+++.++.+.+++.+.. .++++++|++++......+... ..+....+..+...+.. ++.+...
T Consensus 344 f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 421 (990)
T 3cww_A 344 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHY--YPLEEVL 421 (990)
T ss_dssp EEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTT--SCGGGTT
T ss_pred EEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhh--CCHHHHh
Confidence 555554321 11366666666666665544 6999999999988777766643 33444445444222222 3333333
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCC
Q psy8002 441 IEVAYLKSVTKENVLKFYDKRNYTE 465 (469)
Q Consensus 441 ~~~~~l~~lT~edv~~~~~~~~~~~ 465 (469)
...+.++++|.++|.++++. +.++
T Consensus 422 ~~~~~i~~~t~~~i~~~~~~-l~~~ 445 (990)
T 3cww_A 422 TAEYLLEEFRPDLIEMVLDK-LRPE 445 (990)
T ss_dssp TTTTCCCCCCHHHHHHHHTT-CSGG
T ss_pred ccchhhhcCCHHHHHHHHHh-cCHh
Confidence 33467889999999999986 5443
No 18
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.87 E-value=2.4e-20 Score=204.99 Aligned_cols=376 Identities=11% Similarity=0.049 Sum_probs=253.2
Q ss_pred EecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhh----hcc---cccCceEEEeee
Q psy8002 71 LYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYS----YDA---KLAGLAWDLSNT 143 (469)
Q Consensus 71 i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~----y~a---~~ag~~~~~~~~ 143 (469)
.+..||+++++.+++.. |+ .+.+-+..+. +...+++.++..++..+....- +.. ...|..++...+
T Consensus 41 ~~l~nGl~v~~~~~~~~--~~-~~~vg~~~e~----~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~ 113 (995)
T 2fge_A 41 KHKKTGCEVMSVSNEDE--NK-VFGVVFRTPP----KDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTY 113 (995)
T ss_dssp EETTTCCEEEEEECSCS--SE-EEEEEEECCC----SSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEEC
T ss_pred EECCCCCEEEEEEcCCC--cc-EEEEEeCCCC----cCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeEC
Confidence 46789999999998863 33 4566556542 3346899999999977644321 111 123445555555
Q ss_pred CcceEEEEeec-CccHHHHHHHHHHHHccCCCCC--ChHHHHHH---------------HHHHHHHhccccccChHHHHH
Q psy8002 144 KYGMMLGISGY-SHKQSVLLSKVLDKLADFSNHI--DPKRYEII---------------KEQYYRGLKNFEAEQPYQHAI 205 (469)
Q Consensus 144 ~~g~~i~~~G~-s~~l~~ll~~i~~~l~~~~~~~--~~~~f~~~---------------k~~~~~~~~n~~~~~p~~~a~ 205 (469)
.+.....+... .+.+..++..+.+.+.+| .+ +++.|+++ |..+..+++. ..++|...+.
T Consensus 114 ~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p--~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~-~~~~p~~~~~ 190 (995)
T 2fge_A 114 PDRTCYPVASTNTKDFYNLVDVYLDAVFFP--KCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKG-VYSQPDNILG 190 (995)
T ss_dssp SSEEEEEEEESSHHHHHHHHHHHHHHHHSB--GGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHH-HTTSHHHHHH
T ss_pred CCceEEEEecCCHHHHHHHHHHHHHHHhCC--CCCCCHHHHHHhhhhhhcccccccccccchHHHHHHh-hhCCHHHHHH
Confidence 56666666544 357899999999999999 99 99999998 8899999988 6788999999
Q ss_pred HHHHHhccCC-C--CCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHh--ccccCCCC
Q psy8002 206 YSISLCLFER-A--WSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQ--TKLKAKPL 280 (469)
Q Consensus 206 ~~l~~~l~~~-~--~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~--~~~~~~~~ 280 (469)
..+...+++. + +...|..+.|+.+|.+++++||+++|.+.++.++|+||++.+++.++++++++.++ ......+.
T Consensus 191 ~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~ 270 (995)
T 2fge_A 191 RIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKI 270 (995)
T ss_dssp HHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCC
T ss_pred HHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCccc
Confidence 9999888853 2 44567889999999999999999999999999999999999999999998877665 32100111
Q ss_pred CcccccccceeecCCCC--ceEEec-c-CCCCCCeEEEEEEecCCcC--hHhHHHHHHHhhcc----CCCcc---ccccc
Q psy8002 281 LPSQLLRFREIKIPEKS--NLVYET-Q-NAVHKSSCIEAYYQCGVQE--LRDNVLLELFYPIP----DEHTH---YQEQL 347 (469)
Q Consensus 281 ~~~~~~~~~~~~l~~~~--~~~~~~-~-~~~~~ns~v~~~~q~~~~~--~~~~~~~~ll~~il----~~~~f---tk~qL 347 (469)
+. . ..++... ...+.. . .+...++.+.+.|..+... ..+...+.+|+.+| ++++| .+++|
T Consensus 271 ~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~gl 343 (995)
T 2fge_A 271 KF-----Q--KLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGL 343 (995)
T ss_dssp CC-----C--CCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHTTS
T ss_pred CC-----C--CCCCCCceEEEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCC
Confidence 10 0 0011111 111111 0 2233567788888877654 67777888888776 46787 55689
Q ss_pred CcEEEee-eeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCC--Chh--hH
Q psy8002 348 GYIVVSG-IRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPK--KLS--GL 421 (469)
Q Consensus 348 gY~V~s~-~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~--sl~--~~ 421 (469)
+|.++++ +......+.+.+.+. .+.++.+++.++.+.+++.+.. .++++++|+++|+.+..++..... +.. ..
T Consensus 344 ~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~ 422 (995)
T 2fge_A 344 GEALVSSGLSDELLQPQFGIGLK-GVSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSL 422 (995)
T ss_dssp CSEECSCEEECSSSSCEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHH
T ss_pred CcceeeccccccccCeEEEEEEE-eCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHH
Confidence 9999876 444333344444332 2355666666676666666554 699999999999999998876432 222 12
Q ss_pred HHHhHHhhhccccccccchHHHHHHhcCCH----H----HHHHHHHhhcCCC
Q psy8002 422 SSRFWLEITTQQYNFDRANIEVAYLKSVTK----E----NVLKFYDKRNYTE 465 (469)
Q Consensus 422 ~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~----e----dv~~~~~~~~~~~ 465 (469)
+..+...+..+. +........+.++.++. + +|.+++++|+.++
T Consensus 423 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~ 473 (995)
T 2fge_A 423 MLQSISKWIYDM-DPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNN 473 (995)
T ss_dssp HHHHHHHHTTTS-CSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCC-ChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCC
Confidence 333333332221 11222223355555555 7 8999999999753
No 19
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.86 E-value=5.4e-20 Score=200.82 Aligned_cols=379 Identities=11% Similarity=0.045 Sum_probs=251.7
Q ss_pred CeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhh----hcc-cc--cCceEEE
Q psy8002 68 PTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYS----YDA-KL--AGLAWDL 140 (469)
Q Consensus 68 P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~----y~a-~~--ag~~~~~ 140 (469)
+...+..||+++++.+++.-..-...+.+.+.++ .+...+++.++..++..+....- +.. .- .|..++.
T Consensus 87 ~~~~~l~nGl~vl~i~~~~~~~~~~~f~vg~~te----p~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA 162 (1193)
T 3s5m_A 87 TVYQHKKAKTQVISLGTNDPLDVEQAFAFYVKTL----THSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNA 162 (1193)
T ss_dssp EEEEETTTCCEEEEEEECCTTCCCEEEEEEEECC----CSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEE
T ss_pred eEEEECCCCCEEEEEECCCCCeEEEEEEEEECCC----CCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEe
Confidence 4566789999999999875210013455666654 33456899999999887654321 111 11 4556677
Q ss_pred eeeCcceEEEEeecC-ccHHHHHHHHHHHHccCCCCCChHH--HHHH-----------------------------HHHH
Q psy8002 141 SNTKYGMMLGISGYS-HKQSVLLSKVLDKLADFSNHIDPKR--YEII-----------------------------KEQY 188 (469)
Q Consensus 141 ~~~~~g~~i~~~G~s-~~l~~ll~~i~~~l~~~~~~~~~~~--f~~~-----------------------------k~~~ 188 (469)
..+.+.....++..+ +.++.+|..+.+.+.+| .++++. |... |..+
T Consensus 163 ~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P--~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV 240 (1193)
T 3s5m_A 163 YTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQP--NVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIV 240 (1193)
T ss_dssp EECSSEEEEEEEESSHHHHHHHHHHHHHHHHSB--GGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHH
T ss_pred EEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCC--CCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHH
Confidence 667777888888787 78999999999999999 988887 8776 4578
Q ss_pred HHHhccccccChHHHHHHHHHHhccCCC---CCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHH
Q psy8002 189 YRGLKNFEAEQPYQHAIYSISLCLFERA---WSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVK 265 (469)
Q Consensus 189 ~~~~~n~~~~~p~~~a~~~l~~~l~~~~---~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~ 265 (469)
..+++. ..++|...+...+...+++.+ ++..|..+.|..+|.+|+++||+++|.+.++.++|+||++.+++.++++
T Consensus 241 ~~E~k~-~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~ 319 (1193)
T 3s5m_A 241 YNEMKG-ALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVD 319 (1193)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHH
T ss_pred HHHHHH-hhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHH
Confidence 888888 578999999999999888642 4566788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCC----CCCcc-cccccceeecCCCCceEEeccCCCCCCeEEEEEEec---------------------
Q psy8002 266 MLEEKLQTKLKAK----PLLPS-QLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQC--------------------- 319 (469)
Q Consensus 266 ~~~~~l~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ns~v~~~~q~--------------------- 319 (469)
++++.|+..+... +.+.. ....++.+... +. ..+...+..+.+.|.+
T Consensus 320 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~-~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~ 392 (1193)
T 3s5m_A 320 QYLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKK------YG-DHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSE 392 (1193)
T ss_dssp HHHTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEE------EE-CCCSSCCEEEEEEEESSCBCC----------------
T ss_pred HHhccCCCCCCCcccccccCCCCCCCCCeEEEEe------cC-CCCCccccEEEEEEEecCccccccccccccccccccc
Confidence 9888876542110 11100 00001111100 00 0011223334444444
Q ss_pred ------CCcC-------hHhHHHHHHHhhcc----CCCcc---cccccCcEEE-eeeeecCCeeeEEEEEecCC--C---
Q psy8002 320 ------GVQE-------LRDNVLLELFYPIP----DEHTH---YQEQLGYIVV-SGIRKSSGVQGLRIIVQSDK--H--- 373 (469)
Q Consensus 320 ------~~~~-------~~~~~~~~ll~~il----~~~~f---tk~qLgY~V~-s~~~~~~~~~~~~~~vqs~~--~--- 373 (469)
|..+ ..+...+.+|+.+| +||+| .++||||.|+ +++......+.|.+.++... .
T Consensus 393 ~~~y~~~~~~~~~~~~~~~d~~al~vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~ 472 (1193)
T 3s5m_A 393 NNGYSNGSHSSDLSLENPTDYFVLLIINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKI 472 (1193)
T ss_dssp ------CCCCSTTCCCSHHHHHHHHHHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTC
T ss_pred ccccccccccccccccCccHHHHHHHHHHHHCCCCCCHHHHHHHhcCCeeeecccccccccCCcEEEEEEecCChhhccc
Confidence 3333 57777888888776 47788 6689999998 66666555566666664322 2
Q ss_pred --h----hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCC-CChhhH--H---HHhHHhhhccccccc--cc
Q psy8002 374 --P----LFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKP-KKLSGL--S---SRFWLEITTQQYNFD--RA 439 (469)
Q Consensus 374 --~----~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~~-~sl~~~--~---~~~w~~i~~~~~~f~--~~ 439 (469)
+ +.+.+.|.+-++++.+ +++++++++++|..+..++.+.. .+.... + ...|. ..++ .+. ..
T Consensus 473 ~~~~~~~~~~~~~I~~~L~~l~~--~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~--~~~d-p~~~l~~ 547 (1193)
T 3s5m_A 473 KNFDKVHYEVEDVIMNALKKVVK--EGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLN--YNRD-PLLIFEF 547 (1193)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH--TTCC-TTTTTSH
T ss_pred cchhhHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH--cCCC-HHHHHHH
Confidence 2 3455555555554443 79999999999999998887631 221111 1 12232 2233 222 12
Q ss_pred hHHHHHHhcCC---HHHHHHHHHhhcCCC
Q psy8002 440 NIEVAYLKSVT---KENVLKFYDKRNYTE 465 (469)
Q Consensus 440 ~~~~~~l~~lT---~edv~~~~~~~~~~~ 465 (469)
+..++.|+..+ ..+|.+.+++||..+
T Consensus 548 ~~~l~~l~~~~~~~~~~~~~li~~yll~n 576 (1193)
T 3s5m_A 548 EKYLNIVKNKIKNEPMYLEKFVEKHFINN 576 (1193)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhccC
Confidence 44555666543 458999999999654
No 20
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.85 E-value=8e-21 Score=184.28 Aligned_cols=299 Identities=10% Similarity=0.026 Sum_probs=220.8
Q ss_pred ccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccCceEEEeeeCcceEEEEeecCccHHHHHH
Q psy8002 89 VPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNE-----YSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLS 163 (469)
Q Consensus 89 ~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~ag~~~~~~~~~~g~~i~~~G~s~~l~~ll~ 163 (469)
.|.+.+.+.+..+...+ ...+++.++..++..+... +....+..|.+++...+.+.+.+.+++.+++++.+++
T Consensus 10 ~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ 87 (352)
T 3cx5_B 10 TKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVN 87 (352)
T ss_dssp CSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHHH
Confidence 57888888887766543 2568999999998766433 2233345688899998899999999999999999999
Q ss_pred HHHHHHccCCCCCChHHHH-HHHHHHHHHhccccccChHHHHHHHHHHhccCCCCCHHHHHHHccCCCHHHHHHHHHHHH
Q psy8002 164 KVLDKLADFSNHIDPKRYE-IIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLL 242 (469)
Q Consensus 164 ~i~~~l~~~~~~~~~~~f~-~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~edl~~f~~~~~ 242 (469)
.+.+.+.+| .+++++|+ ++|+.+++++++ ..++|...+.+.+...++++++......+.|+++|.+++++|++++|
T Consensus 88 ll~d~~~~p--~f~~~~~~~~~k~~v~~e~~~-~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l~~f~~~~y 164 (352)
T 3cx5_B 88 ALADVLYKT--AFKPHELTESVLPAARYDYAV-AEQCPVKSAEDQLYAITFRKGLGNPLLYDGVERVSLQDIKDFADKVY 164 (352)
T ss_dssp HHHHHHHHB--CCCHHHHHHTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTTTSCSSCCSSSCCCHHHHHHHHHHHC
T ss_pred HHHHHHhCC--CCCHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCCCccchhhhccCCHHHHHHHHHHhC
Confidence 999999999 99999998 999999999998 77899999998888888754332221368999999999999999999
Q ss_pred HhHhhheeeecCCChHHHHHHH-HHHHHHHhccccCCCCCcccccccceeecCCCCceEEeccCCCCCCeEEEEEEecCC
Q psy8002 243 SKMFIEALIHGNANKQVGLSIV-KMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGV 321 (469)
Q Consensus 243 ~~~~~~~lv~Gn~~~~~a~~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ns~v~~~~q~~~ 321 (469)
.+.++.++|+| ++.+++.+++ +++++.|+.... + ++. .. ... ..+....+. . ..++.+...+ .
T Consensus 165 ~~~n~~l~v~G-~~~~~~~~~i~~~~f~~~~~~~~--~-~~~---~~-~~~-~~~~~~~~~---~-~~~~~~~~~~---~ 228 (352)
T 3cx5_B 165 TKENLEVSGEN-VVEADLKRFVDESLLSTLPAGKS--L-VSK---SE-PKF-FLGEENRVR---F-IGDSVAAIGI---P 228 (352)
T ss_dssp CGGGEEEEEES-SCHHHHHHHHHHSTTTTSCCCCC--C-CCC---SC-CCC-CCSCEEEEE---C-SSSEEEEEEE---E
T ss_pred CcCcEEEEEeC-CCHHHHHHHHHHHhhccCCCCCC--C-CCC---CC-CCC-ccCCeEEEe---c-CCCceEEEec---C
Confidence 99999999999 9999999998 676666653211 1 100 00 000 112222222 1 2333333332 2
Q ss_pred cChHhHHHHHHHhhccCCCcccccccCcEEEeeeeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHHcCCCHHHHH
Q psy8002 322 QELRDNVLLELFYPIPDEHTHYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQ 401 (469)
Q Consensus 322 ~~~~~~~~~~ll~~il~~~~ftk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~~~seeef~ 401 (469)
.+.++...+.+++.+|+++++++++++ |+++.....+.+.+.++++.. +++.+.+.|.++++ +++|++||+
T Consensus 229 ~~~~~~~~l~vl~~iLg~~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~-~~~~~~~~i~~~l~------~~~t~~el~ 299 (352)
T 3cx5_B 229 VNKASLAQYEVLANYLTSALSELSGLI--SSAKLDKFTDGGLFTLFVRDQ-DSAVVSSNIKKIVA------DLKKGKDLS 299 (352)
T ss_dssp ECTTTHHHHHHHHHHHHSTTSTTGGGC--SEEEEEEETTEEEEEEEEEES-CHHHHHHHHHHHHH------HHHSCEECG
T ss_pred CCChhHHHHHHHHHHhCcchhcccCce--EEEeecCcCcceeEEEEEEeC-CHHHHHHHHHHHHH------hcCCHHHHH
Confidence 345678889999999988777777776 666666566655566666654 68888888886653 248999999
Q ss_pred HHHHHHHHHhhcCCCC
Q psy8002 402 SHKEALSAQRLEKPKK 417 (469)
Q Consensus 402 ~~k~~l~~~l~~~~~s 417 (469)
++|+.+++++....++
T Consensus 300 ~ak~~~~~~~~~~~~~ 315 (352)
T 3cx5_B 300 PAINYTKLKNAVQNES 315 (352)
T ss_dssp GGHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999999998865554
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.69 E-value=5.6e-16 Score=169.31 Aligned_cols=371 Identities=13% Similarity=0.070 Sum_probs=236.9
Q ss_pred CCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-hhhhhhhc-------ccccCceEEEeee---
Q psy8002 75 PLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKD-ALNEYSYD-------AKLAGLAWDLSNT--- 143 (469)
Q Consensus 75 ~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~-~l~e~~y~-------a~~ag~~~~~~~~--- 143 (469)
+|+.+|+.+..+ .+.+++.+.|..+. -+.+...+..|++.+|.. +.....|. ...+|++++....
T Consensus 725 ~gv~v~~~~~~T--NGIvY~~l~fdl~~--l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~ 800 (1193)
T 3s5m_A 725 GNVPILVYEMPT--TGIVYLQFVFSLDH--LTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKD 800 (1193)
T ss_dssp TCEEEEEEECCC--TTEEEEEEEEECTT--CCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCC
T ss_pred CCeEEEEEECCC--CCeEEEEEEEECCC--CCHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeeccc
Confidence 689999887554 46788888888764 356777888999998855 55444443 3356777776532
Q ss_pred -----------CcceEEEEeecCccHHHHHHHHHHHHccCCCCCChH-HHHHHHHHHHHHhccccccChHHHHHHHHHHh
Q psy8002 144 -----------KYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPK-RYEIIKEQYYRGLKNFEAEQPYQHAIYSISLC 211 (469)
Q Consensus 144 -----------~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~-~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~ 211 (469)
...+.++....+++++.+++++.+.|.++ .|++. ++..+..+.+.++++...+.+...|...+...
T Consensus 801 ~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~--~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~ 878 (1193)
T 3s5m_A 801 DHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKES--DFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAH 878 (1193)
T ss_dssp BTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSB--CTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTT
T ss_pred ccccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHh
Confidence 12378888999999999999999999999 99875 57777777777777744445555666555444
Q ss_pred ccCCCC--------CHHHHHH--------HccCCCHHHHHHHHHHHHHhHhhheeeecCCC-hHHHHHHHHHHHHHHhc-
Q psy8002 212 LFERAW--------SKTELLE--------SLDGITREKLVEFSHDLLSKMFIEALIHGNAN-KQVGLSIVKMLEEKLQT- 273 (469)
Q Consensus 212 l~~~~~--------~~~~~~~--------~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~-~~~a~~l~~~~~~~l~~- 273 (469)
+.+..+ +....+. ..+.+ .++|.++++++|+..++.+.|+|+.+ .+++.+.++.+.+.+..
T Consensus 879 ~s~~~~~~e~~~Gl~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~ 957 (1193)
T 3s5m_A 879 LNSKHYAHNIIYGYENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSY 957 (1193)
T ss_dssp TCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHH
T ss_pred cCcchhhhhhhCChHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhc
Confidence 432110 0111111 12233 78999999999999999999999986 46666666655555532
Q ss_pred ---cccC--------CCCCcccc----cccceeecCCCCceEEeccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhccC
Q psy8002 274 ---KLKA--------KPLLPSQL----LRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPD 338 (469)
Q Consensus 274 ---~~~~--------~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il~ 338 (469)
.... .+.+.... ........+...+..+.. +.. .+.+...+.......++..++.+++++|+
T Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--p~~-v~yv~~~~~~~~~~~~d~~al~Vl~~iLg 1034 (1193)
T 3s5m_A 958 FEENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVL--PTF-VNSVSMSGILFKPGEYLDPSFTVIVAALK 1034 (1193)
T ss_dssp HHHGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEEC--CCS-SBEEEEEEECSCTTCBCCTHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccceeEec--CCc-ceEEEEEecCCCCCCCchHHHHHHHHHHC
Confidence 1100 00000000 000000011111222221 333 33455555544555667788899999998
Q ss_pred -CCcc----cccccCcEEEeeeeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHH
Q psy8002 339 -EHTH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLI---SNMPDEEFQSHKEALSAQ 410 (469)
Q Consensus 339 -~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l---~~~seeef~~~k~~l~~~ 410 (469)
+++| +|. .+|+|+|++. ..| .+.|+ |..+| .+.+.++.|.+.+.... +++|++|++++|.+++++
T Consensus 1035 ~~~L~~eIREkg-GAYg~~s~~~-~~G--~f~~~--syrdp-~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~ 1107 (1193)
T 3s5m_A 1035 NSYLWDTVRGLN-GAYGVFADIE-YDG--SVVFL--SARDP-NLEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGT 1107 (1193)
T ss_dssp HTHHHHHHTTTT-CCSEEEEEEC-TTS--EEEEE--EESBS-CSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhcC-CeeEEEEecc-CCC--cEEEE--EEeCC-CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Confidence 5677 544 4899999976 333 23333 22333 23344555544333222 489999999999999999
Q ss_pred hhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhcCC
Q psy8002 411 RLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYT 464 (469)
Q Consensus 411 l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~ 464 (469)
+. .+.+....+.+.+.....| ...+..+++.+.|.++|.+||++++++|+.+
T Consensus 1108 ~d-~p~~p~~~a~~~~~~~~~G-l~~d~~~~~~~~I~aVT~edv~~vA~~~~~~ 1159 (1193)
T 3s5m_A 1108 ID-KPRRGIELSKLSFLRLISN-ESEQDRVEFRKRIMNTKKEDFYKFADLLESK 1159 (1193)
T ss_dssp HS-CCCCTHHHHHHHHHHHHTT-CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cc-ccCChHHHHHHHHHHHHcC-cCHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Confidence 75 6666666677666544443 5677788999999999999999999999876
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.45 E-value=5.2e-13 Score=117.85 Aligned_cols=154 Identities=12% Similarity=0.030 Sum_probs=115.1
Q ss_pred CCeEEEEEEecCCcChHhHHHHHHHhhccC----CCcc---cccccCcEEEeeeeecCCeeeEEEEEecCCChh-HHHHH
Q psy8002 309 KSSCIEAYYQCGVQELRDNVLLELFYPIPD----EHTH---YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPL-FVDSR 380 (469)
Q Consensus 309 ~ns~v~~~~q~~~~~~~~~~~~~ll~~il~----~~~f---tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~-~l~~~ 380 (469)
+++.+.+.|..+..+.++...+.+|+.+|+ +++| .+++|+|.|+++.....+.+.+.+++.. .|+ .+++.
T Consensus 23 ~~~~v~~~~~~~~~~~~d~~al~vl~~iLggg~sSrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~--~~~~~~~~~ 100 (197)
T 3ih6_A 23 GTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQL--QPGMDQDKA 100 (197)
T ss_dssp CSCEEEEEEECCCTTSTTHHHHHHHHHHHHSSTTSHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEEC--CTTSCHHHH
T ss_pred CCceEEEEEecCCCCCCcHHHHHHHHHHHcCCCCchHHHHHHhcCceEEEEeccccccCCeEEEEEEEE--CCCCCHHHH
Confidence 466788888887766678888888888876 5888 4459999999988765555555555443 233 24444
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHH
Q psy8002 381 IEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYD 459 (469)
Q Consensus 381 I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~ 459 (469)
+..+.+++.+.. .++|++||+++|+.++.++....++....+..++..+..|+ .+..+...+.|++||.+||+++++
T Consensus 101 ~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~--~~~~~~~~~~i~~vT~~dv~~~a~ 178 (197)
T 3ih6_A 101 LQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGD--WRLFFLQRDRVREAKLDDVQRAAV 178 (197)
T ss_dssp HHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTC--TTHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 444444444333 58999999999999999999888888888888887766553 444567899999999999999999
Q ss_pred hhcCCCC
Q psy8002 460 KRNYTES 466 (469)
Q Consensus 460 ~~~~~~s 466 (469)
+||.++.
T Consensus 179 ~~l~~~~ 185 (197)
T 3ih6_A 179 AYLVRSN 185 (197)
T ss_dssp HHSSGGG
T ss_pred HhCCccC
Confidence 9998654
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.43 E-value=5.2e-06 Score=72.49 Aligned_cols=162 Identities=12% Similarity=0.000 Sum_probs=109.0
Q ss_pred cceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccc-ccCceEEEeee-----Ccc-eEEEEeecCc-cHHHH
Q psy8002 90 PKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAK-LAGLAWDLSNT-----KYG-MMLGISGYSH-KQSVL 161 (469)
Q Consensus 90 Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~-~ag~~~~~~~~-----~~g-~~i~~~G~s~-~l~~l 161 (469)
+...+.+.+..|... ++ ......++..+|..+.+..+|... ..|+.++++.. ..| +.+.+.+-.+ +...+
T Consensus 23 ~~~~v~~~~~~~~~~-~~-d~~al~vl~~iLggg~sSrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~ 100 (197)
T 3ih6_A 23 GTPLVAAMYHLPAAG-SP-DFVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKA 100 (197)
T ss_dssp CSCEEEEEEECCCTT-ST-THHHHHHHHHHHHSSTTSHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTSCHHHH
T ss_pred CCceEEEEEecCCCC-CC-cHHHHHHHHHHHcCCCCchHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCCCHHHH
Confidence 566777777777543 33 334556666666653332222210 01443333321 223 5555554445 48878
Q ss_pred HHHHHHHHccCCC-CCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCCCHHHHHHHccCCCHHHHHHHHHH
Q psy8002 162 LSKVLDKLADFSN-HIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHD 240 (469)
Q Consensus 162 l~~i~~~l~~~~~-~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~edl~~f~~~ 240 (469)
++.+.+.+..... .+++++|+++|..++..+.. ..+++...+.......+++......+..+.|+++|.+|++++.++
T Consensus 101 ~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~-~~~~~~~~a~~l~~~~~~g~~~~~~~~~~~i~~vT~~dv~~~a~~ 179 (197)
T 3ih6_A 101 LQTLTATLESLSSKPFSQEELERARSKWLTAWQQ-TYADPEKVGVALSEAIASGDWRLFFLQRDRVREAKLDDVQRAAVA 179 (197)
T ss_dssp HHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHH-HHTSHHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7777777765421 58999999999999999987 677888888877777666433345678899999999999999999
Q ss_pred HHHhHhhheeeecC
Q psy8002 241 LLSKMFIEALIHGN 254 (469)
Q Consensus 241 ~~~~~~~~~lv~Gn 254 (469)
++.+.+..+++.|.
T Consensus 180 ~l~~~~~~~~~~~P 193 (197)
T 3ih6_A 180 YLVRSNRTEGRYIP 193 (197)
T ss_dssp HSSGGGCEEEEECC
T ss_pred hCCccCeEEEEEeC
Confidence 99988888888875
No 24
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.02 E-value=6.8e-05 Score=73.30 Aligned_cols=162 Identities=14% Similarity=0.056 Sum_probs=110.4
Q ss_pred cceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcc--cccCceEEEeee-----Ccc-eEEEEeecCccHHHH
Q psy8002 90 PKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDA--KLAGLAWDLSNT-----KYG-MMLGISGYSHKQSVL 161 (469)
Q Consensus 90 Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a--~~ag~~~~~~~~-----~~g-~~i~~~G~s~~l~~l 161 (469)
+...+.+.+..+.. .++. .....++..+|..+....++.. + .|+.++++.. ..| +.+.+..-.++...+
T Consensus 234 ~q~~~~~~~~~~~~-~~~d-~~~l~vl~~iLgg~~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~ 310 (406)
T 3eoq_A 234 RALYLVALFPGVAY-QEEA-RFPGQVLAHLLGEEGSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADPARKGEV 310 (406)
T ss_dssp SSEEEEEEEECCCT-TCTT-HHHHHHHHHHHHCTTTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHH
T ss_pred cceEEEEEecCCCC-CCch-HHHHHHHHHHhCCCcchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCcchHHHH
Confidence 45677777776653 3443 3445666666665443333321 2 4555554432 123 556655555677777
Q ss_pred HHHHHHHHccCCC-CCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhcc-CCCCCHHHHHHHccCCCHHHHHHHHH
Q psy8002 162 LSKVLDKLADFSN-HIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLF-ERAWSKTELLESLDGITREKLVEFSH 239 (469)
Q Consensus 162 l~~i~~~l~~~~~-~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~-~~~~~~~~~~~~l~~it~edl~~f~~ 239 (469)
++.+.+.+..... .+++++++++|..++..+.. ..+++...+.......++ .......+..+.|+++|.+|+++..+
T Consensus 311 ~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~ 389 (406)
T 3eoq_A 311 LAVLQEELDRLGREGVGEEEVERAKTPLATGLVF-AGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLE 389 (406)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHH
Confidence 7766665543310 59999999999999999977 667787888777666665 44456788899999999999999999
Q ss_pred HHHHhHhhheeeecCCC
Q psy8002 240 DLLSKMFIEALIHGNAN 256 (469)
Q Consensus 240 ~~~~~~~~~~lv~Gn~~ 256 (469)
+++.+..+ ++++|+..
T Consensus 390 ~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 390 RGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp TTTTTSCE-EEEEECCC
T ss_pred HhcCcccE-EEEECCCC
Confidence 99998888 99999753
No 25
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.89 E-value=0.00011 Score=72.44 Aligned_cols=164 Identities=11% Similarity=0.071 Sum_probs=105.1
Q ss_pred cceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHh-hhhhhhccc--ccCceEEEee----e-C-cceEEEEeecCccHHH
Q psy8002 90 PKLNASFEFISPYAYLDPECTNMTHLFISLFKDA-LNEYSYDAK--LAGLAWDLSN----T-K-YGMMLGISGYSHKQSV 160 (469)
Q Consensus 90 Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~-l~e~~y~a~--~ag~~~~~~~----~-~-~g~~i~~~G~s~~l~~ 160 (469)
+.+.+.+.+..+.. .++. .....++..+|..+ +...++... ..|+.|+++. . . ..+.+.+..-.++...
T Consensus 248 ~~~~v~~~~~~~~~-~~~d-~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 325 (434)
T 3gwb_A 248 SQTSLMLAQLGIDR-DDPD-YAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEG 325 (434)
T ss_dssp SEEEEEEEEECCBT-TCTT-HHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHH
T ss_pred CceeEEecCcCCCC-CCcc-hHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhhHHH
Confidence 34566666665543 2332 34455666666544 443333221 1233333222 1 1 2355666665566666
Q ss_pred HHHHHHHHHccCC-CCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCCC-HHHHHHHccCCCHHHHHHHH
Q psy8002 161 LLSKVLDKLADFS-NHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWS-KTELLESLDGITREKLVEFS 238 (469)
Q Consensus 161 ll~~i~~~l~~~~-~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~-~~~~~~~l~~it~edl~~f~ 238 (469)
+++.+.+.+.... ..+++++|+++|..++..+.. ..+++...+.......+++..+. ..+..+.|+++|.+|++++.
T Consensus 326 ~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 404 (434)
T 3gwb_A 326 TLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPL-STASNADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAM 404 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhh-hccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhCCHHHHHHHH
Confidence 6666655554321 058999999999999999887 56688888877776666665554 46788999999999999999
Q ss_pred HHHHHhHhhheeeecCCC
Q psy8002 239 HDLLSKMFIEALIHGNAN 256 (469)
Q Consensus 239 ~~~~~~~~~~~lv~Gn~~ 256 (469)
++++.+.+..++|+|+-.
T Consensus 405 ~~~l~~~~~~~~vvg~~~ 422 (434)
T 3gwb_A 405 NKHLNVDKMVIVSAGPTV 422 (434)
T ss_dssp HHHCCGGGCEEEEEECCC
T ss_pred HHhcChhhEEEEEEcCcc
Confidence 999999999999999754
No 26
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=97.88 E-value=0.00022 Score=69.91 Aligned_cols=163 Identities=10% Similarity=0.038 Sum_probs=107.7
Q ss_pred cceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHh-hhhhhhccc--ccCceEEEeee----C--cceEEEEeecCccHHH
Q psy8002 90 PKLNASFEFISPYAYLDPECTNMTHLFISLFKDA-LNEYSYDAK--LAGLAWDLSNT----K--YGMMLGISGYSHKQSV 160 (469)
Q Consensus 90 Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~-l~e~~y~a~--~ag~~~~~~~~----~--~g~~i~~~G~s~~l~~ 160 (469)
+...+.+.+..+.. .++. .....++..++..+ ++..++... ..|+.|+++.. . ..+.+.+..-.++...
T Consensus 241 ~~~~v~~~~~~~~~-~~~~-~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 318 (424)
T 3amj_B 241 TQAHIAIGMPTLKR-GDPD-FFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADE 318 (424)
T ss_dssp SEEEEEEEEEEEBT-TCTT-HHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHH
T ss_pred CccEEEeeccCCCC-CCcc-hHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHH
Confidence 45666666655432 2332 34446666666554 444444322 23555554332 1 2256666655566776
Q ss_pred HHHHHHHHHc---cCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCCC-HHHHHHHccCCCHHHHHH
Q psy8002 161 LLSKVLDKLA---DFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWS-KTELLESLDGITREKLVE 236 (469)
Q Consensus 161 ll~~i~~~l~---~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~-~~~~~~~l~~it~edl~~ 236 (469)
+++.+.+.+. +- .+++++|+++|..++..+.. ..+++...+.......+.+..+. .....+.|+++|.+|+++
T Consensus 319 ~~~~i~~~l~~l~~~--~~t~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 395 (424)
T 3amj_B 319 AVQVANDTLDAFLRE--GPTDAELQAAKDNLINGFAL-RLDSNAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVRE 395 (424)
T ss_dssp HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTSGG-GGSSHHHHHHHHHHHHHTTCCTTTTTSHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhhhhH-hcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHcCCHHHHHH
Confidence 6666655554 44 68999999999999999887 55678777777666555554444 356788999999999999
Q ss_pred HHHHHHHhHhhheeeecCCCh
Q psy8002 237 FSHDLLSKMFIEALIHGNANK 257 (469)
Q Consensus 237 f~~~~~~~~~~~~lv~Gn~~~ 257 (469)
+.++++.+.+..++++|+-.+
T Consensus 396 ~a~~~l~~~~~~~~~~~~~~~ 416 (424)
T 3amj_B 396 AFARHVKRENLITVVVGGKAS 416 (424)
T ss_dssp HHHHHCCGGGCEEEEEECC--
T ss_pred HHHHhcCccceEEEEECChhh
Confidence 999999999999999998653
No 27
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.85 E-value=0.00038 Score=68.23 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=105.1
Q ss_pred cceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccc--ccCceEEEee-----eCcc-eEEEEeecCccHHHH
Q psy8002 90 PKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAK--LAGLAWDLSN-----TKYG-MMLGISGYSHKQSVL 161 (469)
Q Consensus 90 Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~--~ag~~~~~~~-----~~~g-~~i~~~G~s~~l~~l 161 (469)
+.+.+.+.+..+.. .++. .....++..++..++...++... ..|+.|+++. ...| +.+.+..-.++...+
T Consensus 233 ~q~~v~~~~~~~~~-~~~d-~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~ 310 (421)
T 3hdi_A 233 EQAHLCLGYPGLPI-GDKD-VYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDL 310 (421)
T ss_dssp SEEEEEEEEECCCT-TCTT-HHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHHH
T ss_pred CceEEEEEEecCCC-CCch-HHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHHHHH
Confidence 45677777776543 3333 33445566666544333333221 1233333221 1233 455555445577776
Q ss_pred HHHHHHHHc---cCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhc-cCCCCCHHHHHHHccCCCHHHHHHH
Q psy8002 162 LSKVLDKLA---DFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCL-FERAWSKTELLESLDGITREKLVEF 237 (469)
Q Consensus 162 l~~i~~~l~---~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l-~~~~~~~~~~~~~l~~it~edl~~f 237 (469)
++.+.+.+. +- .+++++++++|..++..+.. ..+++...+.......+ ........+..+.|+++|.+|++++
T Consensus 311 ~~~i~~~l~~l~~~--~~t~~el~~ak~~l~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~ 387 (421)
T 3hdi_A 311 VYSIQETTSALAEK--GLTEKELENGKEQLKGSLML-SLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRL 387 (421)
T ss_dssp HHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHH
Confidence 666655554 44 69999999999999999876 56677777766544444 3444567788999999999999999
Q ss_pred HHHHHHhHhhheeeecCCC
Q psy8002 238 SHDLLSKMFIEALIHGNAN 256 (469)
Q Consensus 238 ~~~~~~~~~~~~lv~Gn~~ 256 (469)
.++++ +.+..++++|+.+
T Consensus 388 a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 388 AKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHT-TSCCEEEEEESSC
T ss_pred HHHHc-ccCcEEEEECchh
Confidence 99999 8899999999865
No 28
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.80 E-value=0.0003 Score=69.59 Aligned_cols=164 Identities=10% Similarity=0.054 Sum_probs=109.4
Q ss_pred ceEEEEEEECCCC--CC-CHHHHHHHHHHHHHHHHhhhhhhhcc--cccCceEEEeee------C-cc-eEEEEeecCc-
Q psy8002 91 KLNASFEFISPYA--YL-DPECTNMTHLFISLFKDALNEYSYDA--KLAGLAWDLSNT------K-YG-MMLGISGYSH- 156 (469)
Q Consensus 91 k~~i~~~~~~~~~--~~-~~~~~~l~~l~~~ll~~~l~e~~y~a--~~ag~~~~~~~~------~-~g-~~i~~~G~s~- 156 (469)
...+.+.+..|.. .. ++ ......++..++..+.+..++.. +..|+.|++++. . .| +.+.+.+-.+
T Consensus 244 ~~~v~l~~~~~~~~~~~~~~-~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~ 322 (445)
T 3ami_A 244 LPYLALAWHVPAIVDLDKSR-DAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGV 322 (445)
T ss_dssp SCEEEEEEEECCCSSTTCCH-HHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTC
T ss_pred ccEEEEEEEcCCcccccCCh-hHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCC
Confidence 4556666666652 22 44 34555677777775544444432 234665555432 1 23 4555655545
Q ss_pred cHHHHHHHHHHHHccCC-CCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCC-CHHHHHHHccCCCHHHH
Q psy8002 157 KQSVLLSKVLDKLADFS-NHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAW-SKTELLESLDGITREKL 234 (469)
Q Consensus 157 ~l~~ll~~i~~~l~~~~-~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~-~~~~~~~~l~~it~edl 234 (469)
+...+++.+.+.|.... ..+++++|+++|..++..+.. ..+++...+.......+....+ ......+.|+++|.+|+
T Consensus 323 ~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv 401 (445)
T 3ami_A 323 TIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVY-EQDSLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEV 401 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHH
Confidence 36666666555444320 058999999999999999987 5667877777777766665444 34667899999999999
Q ss_pred HHHHHHHHHhHhhheeeecCCC
Q psy8002 235 VEFSHDLLSKMFIEALIHGNAN 256 (469)
Q Consensus 235 ~~f~~~~~~~~~~~~lv~Gn~~ 256 (469)
.++.++++.+.+..++++|.-.
T Consensus 402 ~~~a~~~l~~~~~~~~~~~p~~ 423 (445)
T 3ami_A 402 KAAAARLLTDDTLTVANLVPLP 423 (445)
T ss_dssp HHHHHTTSCSTTEEEEEEEEEC
T ss_pred HHHHHHHcCcCCeEEEEEccCc
Confidence 9999999998888888888643
No 29
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.80 E-value=0.00036 Score=68.75 Aligned_cols=163 Identities=11% Similarity=0.082 Sum_probs=105.2
Q ss_pred cceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHh--------hhhhhhccc--ccCceEEEee-----eCcc-eEEEEee
Q psy8002 90 PKLNASFEFISPYAYLDPECTNMTHLFISLFKDA--------LNEYSYDAK--LAGLAWDLSN-----TKYG-MMLGISG 153 (469)
Q Consensus 90 Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~--------l~e~~y~a~--~ag~~~~~~~-----~~~g-~~i~~~G 153 (469)
+...+.+.+..+.. .++ ......++..++..+ ++..++... ..|+.|+++. ...| +.+.+.+
T Consensus 251 ~~~~v~~~~~~~~~-~~~-~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~ 328 (439)
T 1pp9_B 251 SLVHAALVAESAAI-GSA-EANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTIS 328 (439)
T ss_dssp SEEEEEEEEECCCT-TSH-HHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEEEEecCCCC-Cch-HHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEe
Confidence 45677777776653 344 344556666666431 122222211 2233333322 1223 4555555
Q ss_pred cCccHHHHHHHHHHHHccCCC-CCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhcc-CCCCCHHHHHHHccCCCH
Q psy8002 154 YSHKQSVLLSKVLDKLADFSN-HIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLF-ERAWSKTELLESLDGITR 231 (469)
Q Consensus 154 ~s~~l~~ll~~i~~~l~~~~~-~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~-~~~~~~~~~~~~l~~it~ 231 (469)
-.++...+++.+.+.+..... .+++++|+.+|..++..+.. ..++|...+.......+. ..........+.|+++|.
T Consensus 329 ~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~ 407 (439)
T 1pp9_B 329 QAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLM-SVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVAD 407 (439)
T ss_dssp EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-HTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCH
Confidence 445777777766655553210 59999999999999999877 556787777766655554 333456778899999999
Q ss_pred HHHHHHHHHHHHhHhhheeeecCCC
Q psy8002 232 EKLVEFSHDLLSKMFIEALIHGNAN 256 (469)
Q Consensus 232 edl~~f~~~~~~~~~~~~lv~Gn~~ 256 (469)
+|++++.++++. .+..++++|+..
T Consensus 408 ~dv~~~a~~~~~-~~~~~~v~g~~~ 431 (439)
T 1pp9_B 408 ADVINAAKKFVS-GRKSMAASGNLG 431 (439)
T ss_dssp HHHHHHHHHHHH-SCEEEEEEECGG
T ss_pred HHHHHHHHHHhc-CCceEEEECCcc
Confidence 999999999998 788889999753
No 30
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.75 E-value=0.00054 Score=67.60 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=105.6
Q ss_pred ccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHH---------hhhhhhhccc--ccCceEEEee-----eCcc-eEEEE
Q psy8002 89 VPKLNASFEFISPYAYLDPECTNMTHLFISLFKD---------ALNEYSYDAK--LAGLAWDLSN-----TKYG-MMLGI 151 (469)
Q Consensus 89 ~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~---------~l~e~~y~a~--~ag~~~~~~~-----~~~g-~~i~~ 151 (469)
.+.+.+.+.+..+.. .++. .....++..+|.. ++...++... ..|+.|+++. ...| +.+.+
T Consensus 244 ~~~~~v~~~~~~~~~-~~~~-~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~ 321 (443)
T 1hr6_B 244 LPTTHIAIALEGVSW-SAPD-YFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYI 321 (443)
T ss_dssp CSEEEEEEEEECCCT-TCTT-HHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEE
T ss_pred ccceEEEEEEecCCC-CCcc-HHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEE
Confidence 356778887777643 2332 3334555555532 1122222111 1233332221 1223 45555
Q ss_pred eec--CccHHHHHHHHHHHH---ccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHh-ccCCCCCHHHHHHH
Q psy8002 152 SGY--SHKQSVLLSKVLDKL---ADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLC-LFERAWSKTELLES 225 (469)
Q Consensus 152 ~G~--s~~l~~ll~~i~~~l---~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~-l~~~~~~~~~~~~~ 225 (469)
..- .++...+++.+.+.+ .+- .+++++++++|..++..+.. ..+.|...+....... .++...+..+..+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~~~--~~t~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (443)
T 1hr6_B 322 VTDSNEHNVRLIVNEILKEWKRIKSG--KISDAEVNRAKAQLKAALLL-SLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQ 398 (443)
T ss_dssp EEETTTCCHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHT-TCCSHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred EecCChhHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 544 457777777666555 444 59999999999999999987 5667777776665554 34555567778899
Q ss_pred ccCCCHHHHHHHHHHHHHhHhhheeeecCCC
Q psy8002 226 LDGITREKLVEFSHDLLSKMFIEALIHGNAN 256 (469)
Q Consensus 226 l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~ 256 (469)
|+++|.+|++++.++++.+.+..++++|+..
T Consensus 399 i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 429 (443)
T 1hr6_B 399 VDKITKDDIIMWANYRLQNKPVSMVALGNTS 429 (443)
T ss_dssp HHTCCHHHHHHHHHHHSSSCCEEEEEEECGG
T ss_pred HHhCCHHHHHHHHHHHhccCCcEEEEECCcc
Confidence 9999999999999999988888899999854
No 31
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.74 E-value=0.00068 Score=67.63 Aligned_cols=163 Identities=9% Similarity=0.073 Sum_probs=109.4
Q ss_pred cceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHh-----------hhhhhhccc--ccCceEEEeee-----Ccc-eEEE
Q psy8002 90 PKLNASFEFISPYAYLDPECTNMTHLFISLFKDA-----------LNEYSYDAK--LAGLAWDLSNT-----KYG-MMLG 150 (469)
Q Consensus 90 Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~-----------l~e~~y~a~--~ag~~~~~~~~-----~~g-~~i~ 150 (469)
+...+.+.+..+.. .++.. ....++..+|..+ +...++... ..|+.|++... ..| +.+.
T Consensus 242 ~~~~v~~~~~~~~~-~~~d~-~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~ 319 (475)
T 1hr6_A 242 ELFHIQIGFEGLPI-DHPDI-YALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGIS 319 (475)
T ss_dssp CCEEEEEEEECCCT-TCTTH-HHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEE
T ss_pred cceEEEEEEecCCC-CCccH-HHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEE
Confidence 45677777775443 33433 3345566666421 223333221 23554444321 223 5666
Q ss_pred EeecCccHHHHHHHHHHHHccCCC----CCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhc-cCCCCCHHHHHHH
Q psy8002 151 ISGYSHKQSVLLSKVLDKLADFSN----HIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCL-FERAWSKTELLES 225 (469)
Q Consensus 151 ~~G~s~~l~~ll~~i~~~l~~~~~----~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l-~~~~~~~~~~~~~ 225 (469)
+..-.+++...++.+.+.+..... .+++++|+++|..++..+.. ..+++...+......++ ++...+..+..+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (475)
T 1hr6_A 320 LSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLM-NLESKLVELEDMGRQVLMHGRKIPVNEMISK 398 (475)
T ss_dssp EEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 666556788888888877776532 48999999999999999877 56677777776665443 4544567778899
Q ss_pred ccCCCHHHHHHHHHHHHHh---------HhhheeeecCC
Q psy8002 226 LDGITREKLVEFSHDLLSK---------MFIEALIHGNA 255 (469)
Q Consensus 226 l~~it~edl~~f~~~~~~~---------~~~~~lv~Gn~ 255 (469)
|+++|.+|++++.++++.+ .+..+.++|+.
T Consensus 399 i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 399 IEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 9999999999999999987 47889999987
No 32
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.67 E-value=0.00046 Score=68.26 Aligned_cols=109 Identities=6% Similarity=-0.083 Sum_probs=84.5
Q ss_pred eEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHh-ccCCCCCHHHHHHH
Q psy8002 147 MMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLC-LFERAWSKTELLES 225 (469)
Q Consensus 147 ~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~-l~~~~~~~~~~~~~ 225 (469)
+.+.+..-.++...+++.+.+.+......+++++++++|..++..+.. ..++|...+......+ +++...+..+..+.
T Consensus 320 ~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (446)
T 1pp9_A 320 LGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVS-HLDGTTPVCEDIGRSLLTYGRRIPLAEWESR 398 (446)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HSCSHHHHHHHHHHHHHHTSSCCCHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 556665545678887777777665431138999999999999999877 5667877777655554 45555667778899
Q ss_pred ccCCCHHHHHHHHHHHHHhHhhheeeecCCC
Q psy8002 226 LDGITREKLVEFSHDLLSKMFIEALIHGNAN 256 (469)
Q Consensus 226 l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~ 256 (469)
|+++|.+|++++.++++.+.+..++++|+.+
T Consensus 399 i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 399 IAEVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HHTCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHcCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 9999999999999999988888999999865
No 33
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.66 E-value=0.00053 Score=67.13 Aligned_cols=162 Identities=12% Similarity=0.107 Sum_probs=100.8
Q ss_pred ccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcc--cccCceEEEeee---Ccc-eEEEEeecCccHHHHH
Q psy8002 89 VPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDA--KLAGLAWDLSNT---KYG-MMLGISGYSHKQSVLL 162 (469)
Q Consensus 89 ~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a--~~ag~~~~~~~~---~~g-~~i~~~G~s~~l~~ll 162 (469)
.+...+.+.+..|....++ ......++..++..+....++.. +..|+.|+++.. ..| +.+.+..-.+++..++
T Consensus 252 ~~~~~v~~~~~~~~~~~~~-~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~~~~ 330 (425)
T 3d3y_A 252 LAQSKLNLAYNTDIYYGDS-YYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVL 330 (425)
T ss_dssp CSSEEEEEEEECCCCTTST-THHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGHHHHH
T ss_pred ccccEEEEEeecCCCCCCc-hHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhHHHHH
Confidence 3567777777765333333 33445666666643333322221 122444433321 234 4455544345677666
Q ss_pred HHHHHHHccCCC-CCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhcc-CCCCCHHHHHHHccCCCHHHHHHHHHH
Q psy8002 163 SKVLDKLADFSN-HIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLF-ERAWSKTELLESLDGITREKLVEFSHD 240 (469)
Q Consensus 163 ~~i~~~l~~~~~-~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~-~~~~~~~~~~~~l~~it~edl~~f~~~ 240 (469)
+.+.+.+..... .+++++|+++|..++..+.. ..++|...+.......+. +.........+.|+++|.+|++++.++
T Consensus 331 ~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~ 409 (425)
T 3d3y_A 331 RLISTELENIRLGKIRELEIEQTKAMLKNQYIL-ALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKR 409 (425)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHh-cccCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHh
Confidence 666555443211 58999999999999999877 556788888777666666 544457778999999999999999999
Q ss_pred HHHhHhhheeeecC
Q psy8002 241 LLSKMFIEALIHGN 254 (469)
Q Consensus 241 ~~~~~~~~~lv~Gn 254 (469)
++.. ...+|.|+
T Consensus 410 ~~~~--~~~~v~g~ 421 (425)
T 3d3y_A 410 LELQ--AIFFLEGE 421 (425)
T ss_dssp CEEE--EEEEEEEE
T ss_pred ccCc--eEEEEeCC
Confidence 7533 33466664
No 34
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.66 E-value=0.00044 Score=67.86 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=81.2
Q ss_pred eEEEEeecC-ccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccc-cccChHHHHHHHHHHhc-cCCCCCHHHHH
Q psy8002 147 MMLGISGYS-HKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNF-EAEQPYQHAIYSISLCL-FERAWSKTELL 223 (469)
Q Consensus 147 ~~i~~~G~s-~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~-~~~~p~~~a~~~l~~~l-~~~~~~~~~~~ 223 (469)
+.+.+..-. ++...+++.+.+.+......+++++|+++|..++..+... ..++|...+.......+ .+.........
T Consensus 302 ~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 381 (431)
T 3cx5_A 302 WGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAF 381 (431)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred EEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 456665555 6777777766665554311389999999999999988661 23567777776655543 45444567788
Q ss_pred HHccCCCHHHHHHHHHHHHHhHhhheeeecCCC
Q psy8002 224 ESLDGITREKLVEFSHDLLSKMFIEALIHGNAN 256 (469)
Q Consensus 224 ~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~ 256 (469)
+.|+++|.+|++++.++++.+.+..++++|+.+
T Consensus 382 ~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 382 KKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 999999999999999999988888899999865
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=97.17 E-value=0.0091 Score=59.73 Aligned_cols=181 Identities=10% Similarity=0.043 Sum_probs=100.6
Q ss_pred cceEEEEEEECCCCC-CCH---HHHHHHHHHHHHHHHhhhhhhhcccccCceEEEeee----CcceEEEEeecCccHHHH
Q psy8002 90 PKLNASFEFISPYAY-LDP---ECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNT----KYGMMLGISGYSHKQSVL 161 (469)
Q Consensus 90 Pk~~i~~~~~~~~~~-~~~---~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~~~~~----~~g~~i~~~G~s~~l~~l 161 (469)
+...+.+.+..|... .+. +......++..+|...|....-.....|+.++++.. .....+.+++-.++...+
T Consensus 265 ~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~i~~~~~~~~~a 344 (492)
T 3go9_A 265 AQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVENLTAN 344 (492)
T ss_dssp SSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEEEECGGGHHHH
T ss_pred CCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchhhhhhcceEEEEEcCcccHHHH
Confidence 345566666655432 222 122233444444443333211111234666655542 123456666667777776
Q ss_pred HHHHHHHHccCC-CCCChHHHHHHHHHHHHHhccc----cccChHHHHHHHHHHhccCCCC-CHHH---H-HHHccCCCH
Q psy8002 162 LSKVLDKLADFS-NHIDPKRYEIIKEQYYRGLKNF----EAEQPYQHAIYSISLCLFERAW-SKTE---L-LESLDGITR 231 (469)
Q Consensus 162 l~~i~~~l~~~~-~~~~~~~f~~~k~~~~~~~~n~----~~~~p~~~a~~~l~~~l~~~~~-~~~~---~-~~~l~~it~ 231 (469)
++.+.+.+..+. ..+++++++++|..++..+... ..+.+...+...+..++....+ ++++ . .+.|+++|.
T Consensus 345 ~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~ 424 (492)
T 3go9_A 345 MTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTL 424 (492)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCH
Confidence 666655544321 0699999999999999887552 1234555666655555544332 3433 2 355899999
Q ss_pred HHHHHHHHHHHHhHhhheeeecC-CChHH-HHHHHHHHHHHH
Q psy8002 232 EKLVEFSHDLLSKMFIEALIHGN-ANKQV-GLSIVKMLEEKL 271 (469)
Q Consensus 232 edl~~f~~~~~~~~~~~~lv~Gn-~~~~~-a~~l~~~~~~~l 271 (469)
+|+.++.++++.+... ++|+|+ -..+. ..++...+.+..
T Consensus 425 edV~~~a~~~l~~~~~-~vvvg~~~~~e~~~~~l~~~~~~~~ 465 (492)
T 3go9_A 425 AELNRELKQQLSQDTT-LVLMQPKGEPEVNVKALQEIYNGIM 465 (492)
T ss_dssp HHHHHHHHHHHTSCCE-EEEEEETTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCe-EEEEcCCCCCCccHHHHHHHHHHHh
Confidence 9999999999997544 555553 33332 444544444433
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=95.12 E-value=0.048 Score=51.56 Aligned_cols=148 Identities=14% Similarity=0.045 Sum_probs=82.4
Q ss_pred CCeEEEEEEecCCcChHhHHHHHHHhhccC--CCcc-------cccccCcEEEeeeeecCCeeeEEEEEecCCChhHHHH
Q psy8002 309 KSSCIEAYYQCGVQELRDNVLLELFYPIPD--EHTH-------YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDS 379 (469)
Q Consensus 309 ~ns~v~~~~q~~~~~~~~~~~~~ll~~il~--~~~f-------tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~l~~ 379 (469)
+...+.+++..|...........++.+++. +.-+ .-+.+|-.+.++. ..+...+.+. + .++++..
T Consensus 11 ~~v~~~~~~~~Gs~~e~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t--~~~~t~~~~~--~--~~~~l~~ 84 (352)
T 3cx5_B 11 KISTLAVKVHGGSRYATKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTL--DREYITLKAT--F--LKDDLPY 84 (352)
T ss_dssp SEEEEEEEESCSGGGCSSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEE--CSSCEEEEEE--E--EGGGHHH
T ss_pred ceEEEEEEEeeeccCCCcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEE--ccceEEEEEE--e--chhhHHH
Confidence 334455566666544334456677777763 2222 2234454444432 2222333322 2 2345555
Q ss_pred HHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHH
Q psy8002 380 RIEAFLAQMKDLISNMPDEEFQ-SHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFY 458 (469)
Q Consensus 380 ~I~~fl~~~~~~l~~~seeef~-~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~ 458 (469)
.++.+.+-+.. -.+++++|+ +.|..++..+.....+....+.........+. .+.+.- ..+.|+++|.+++.+|+
T Consensus 85 ~l~ll~d~~~~--p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~-p~~~~~-~~~~l~~it~~~l~~f~ 160 (352)
T 3cx5_B 85 YVNALADVLYK--TAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRK-GLGNPL-LYDGVERVSLQDIKDFA 160 (352)
T ss_dssp HHHHHHHHHHH--BCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TTTSCS-SCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCCCcc-chhhhccCCHHHHHHHH
Confidence 55555543332 468999998 98988888777554555444433333222221 121111 14678999999999999
Q ss_pred HhhcCCCC
Q psy8002 459 DKRNYTES 466 (469)
Q Consensus 459 ~~~~~~~s 466 (469)
++++.|++
T Consensus 161 ~~~y~~~n 168 (352)
T 3cx5_B 161 DKVYTKEN 168 (352)
T ss_dssp HHHCCGGG
T ss_pred HHhCCcCc
Confidence 99998754
No 37
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=49.38 E-value=28 Score=21.31 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=20.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q psy8002 371 DKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQR 411 (469)
Q Consensus 371 ~~~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l 411 (469)
+.++..++.--++.+.++++. ++++|+-+|..+
T Consensus 3 ~~~~~dle~~KqEIL~E~RkE--------lqK~K~EIIeAi 35 (45)
T 1use_A 3 SSDYSDLQRVKQELLEEVKKE--------LQKVKEEIIEAF 35 (45)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 346777777777777777764 455555555443
No 38
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=32.49 E-value=1.4e+02 Score=21.55 Aligned_cols=59 Identities=14% Similarity=0.259 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCChhhHHH---HhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhc
Q psy8002 394 NMPDEEFQSHKEALSAQRLEKPKKLSGLSS---RFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRN 462 (469)
Q Consensus 394 ~~seeef~~~k~~l~~~l~~~~~sl~~~~~---~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~ 462 (469)
++++.+++.++... +.++.+... ..|..-.... ...+..+++|..+...++.+-.+..+
T Consensus 36 g~~~~~I~~I~~~~-------~~d~~eq~~~mL~~W~~~~g~~---At~~~L~~AL~~~~~~~iae~i~~~~ 97 (99)
T 1fad_A 36 KVSEAKMDGIEEKY-------PRSLSERVRESLKVWKNAEKKN---ASVAGLVKALRTCRLNLVADLVEEAQ 97 (99)
T ss_dssp TCCHHHHHHHHHHC-------SSCHHHHHHHHHHHHHHHHGGG---GSHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHC-------CCCHHHHHHHHHHHHHhccCCC---CcHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 79999988877532 233433333 3455433221 24578889999999888888776654
No 39
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=26.02 E-value=51 Score=29.83 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=31.6
Q ss_pred ccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHH
Q psy8002 226 LDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVK 265 (469)
Q Consensus 226 l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~ 265 (469)
|++++++++++..+.. ..++.+.++|+++.+.+.++++
T Consensus 235 LDn~~~~~l~~av~~i--~~~v~ieaSGGI~~~~i~~~a~ 272 (298)
T 3gnn_A 235 LDNFTLDMMRDAVRVT--EGRAVLEVSGGVNFDTVRAIAE 272 (298)
T ss_dssp EESCCHHHHHHHHHHH--TTSEEEEEESSCSTTTHHHHHH
T ss_pred ECCCCHHHHHHHHHHh--CCCCeEEEEcCCCHHHHHHHHH
Confidence 4678999999888765 4578999999999999988764
No 40
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=26.01 E-value=33 Score=17.59 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=11.9
Q ss_pred cCCCeeeeeecCCcc
Q psy8002 73 NSPLIRAWHKQDDEY 87 (469)
Q Consensus 73 ~~~~~~lw~~~d~~f 87 (469)
.+.|.++||.-.++|
T Consensus 11 r~kgarlwyvggtq~ 25 (26)
T 1gff_3 11 KSKGARLWYVGGTQY 25 (26)
T ss_pred CCCceEEEEecceec
Confidence 478999999886655
No 41
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=25.34 E-value=1.4e+02 Score=22.26 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCChhhHHHH---hHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhc
Q psy8002 394 NMPDEEFQSHKEALSAQRLEKPKKLSGLSSR---FWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRN 462 (469)
Q Consensus 394 ~~seeef~~~k~~l~~~l~~~~~sl~~~~~~---~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~ 462 (469)
++++.+++.++.. .+.++.+.+.. .|..-. |. -...+..+++|..+...|+.+-.....
T Consensus 40 g~s~~~I~~I~~~-------~p~~~~eq~~~mL~~W~~~~-g~--~AT~~~L~~aL~~i~r~diae~l~~~~ 101 (111)
T 2yqf_A 40 QFSVEDINRIRVE-------NPNSLLEQSVALLNLWVIRE-GQ--NANMENLYTALQSIDRGEIVNMLEGSG 101 (111)
T ss_dssp TCCHHHHHHHHHH-------SCSCHHHHHHHHHHHHHHHH-TT--SCCHHHHHHHHHHTTCCHHHHHHSCCC
T ss_pred CCCHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHhh-CC--CchHHHHHHHHHHcCcHHHHHHHHHhc
Confidence 7999998888742 24455554443 454432 21 135678899999999999988776544
No 42
>1r9f_A Core protein P19; protein-RNA complex, dimer, double helix, viral protein/RNA complex; 1.85A {Tomato bushy stunt virus} SCOP: d.255.1.1
Probab=23.43 E-value=1.3e+02 Score=22.34 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=25.8
Q ss_pred ccCceEEEeeeCcceEEEEeecCccHHHHHHHHHH
Q psy8002 133 LAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLD 167 (469)
Q Consensus 133 ~ag~~~~~~~~~~g~~i~~~G~s~~l~~ll~~i~~ 167 (469)
..|..|+|.. .|+.++++|=+..|..|+++...
T Consensus 85 QigCTYSIR~--RGvs~T~SGGSrtLq~L~eMAiR 117 (136)
T 1r9f_A 85 QIGCTYSIRF--RGVSITVSGGSRTLQHLCEMAIR 117 (136)
T ss_dssp CCEEEEEEEE--TTEEEEEEEEGGGHHHHHHHHHH
T ss_pred ccceeEEEEE--eeEEEEEcCCcHHHHHHHHHHHH
Confidence 4456777765 79999999999999888887553
No 43
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=23.09 E-value=1.2e+02 Score=18.89 Aligned_cols=23 Identities=4% Similarity=0.206 Sum_probs=16.6
Q ss_pred HHHHHc-CCCHHHHHHHHHHHHHH
Q psy8002 388 MKDLIS-NMPDEEFQSHKEALSAQ 410 (469)
Q Consensus 388 ~~~~l~-~~seeef~~~k~~l~~~ 410 (469)
|...+. --+|++|..+|..++.+
T Consensus 24 Fe~ki~~~~tE~q~k~iKr~IIRs 47 (49)
T 3bbz_A 24 FEQRLAKASTEDALNDIKRDIIRS 47 (49)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHh
Confidence 444454 44899999999988764
No 44
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=20.17 E-value=2.2e+02 Score=21.17 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHhH-hhheeeecCCChHHHHHHHHHHHHHH
Q psy8002 228 GITREKLVEFSHDLLSKM-FIEALIHGNANKQVGLSIVKMLEEKL 271 (469)
Q Consensus 228 ~it~edl~~f~~~~~~~~-~~~~lv~Gn~~~~~a~~l~~~~~~~l 271 (469)
.+.+.|+..+..+++... +....|..++++.++.+-++.+...+
T Consensus 3 amnlkdllahrenlmdsakrarsaitddmdpadaaqavenvksii 47 (141)
T 2r9i_A 3 AMNLKDLLAHRENLMDSAKRARSAITDDMDPADAAQAVENVKSII 47 (141)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHH
Confidence 567889999888888654 88889999999998887776665444
Done!