RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8002
(469 letters)
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
insulinase-like [Posttranslational modification, protein
turnover, chaperones].
Length = 937
Score = 231 bits (591), Expect = 3e-67
Identities = 123/424 (29%), Positives = 206/424 (48%), Gaps = 18/424 (4%)
Query: 42 WTNPSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRV-PKLNASFEFIS 100
+ P PN FI D SL+ S+ P +L P +R W+ ++D + V PK + S S
Sbjct: 477 LSLPEPNPFIPDDVSLIKSEKKF-TFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRS 535
Query: 101 PYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSV 160
P+A P +T L+ L DAL++ SY A LAGL++ L+ G+ L ISG++ +
Sbjct: 536 PHASRSPRNQVLTELYAYLANDALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQ 595
Query: 161 LLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKT 220
LL LD L +D R+E K Q LKN +PY+ A+ ++ L WS+
Sbjct: 596 LLRAFLDGLFSLP--VDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYWSRE 653
Query: 221 ELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPL 280
E +L+ ++ E+ F LL+ + +E L+ GN + ++ + L++KL P
Sbjct: 654 ERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKL-------PA 706
Query: 281 LPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEH 340
+ S R + + + ++ET S+ Y E++ + L L +
Sbjct: 707 IGSTWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQYDEIKSSALSSLLGQLI-HP 765
Query: 341 THY-----QEQLGYIVVSGIRKSSGVQGLRIIVQSDKH-PLFVDSRIEAFLAQMKDLISN 394
+ +EQLGY V SG R+ G+ +VQS+ P ++ RI AFL + +
Sbjct: 766 WFFDQLRTKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLETAEPELRE 825
Query: 395 MPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENV 454
M +E+F+ K+AL Q L+ P+ L+ +SR W +FD ++ +K++TK+ +
Sbjct: 826 MSEEDFEQIKKALINQILQPPQNLAEEASRLWKAFGRGNLDFDHREKKIEAVKTLTKQKL 885
Query: 455 LKFY 458
L F+
Sbjct: 886 LDFF 889
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional.
Length = 961
Score = 113 bits (286), Expect = 7e-27
Identities = 107/431 (24%), Positives = 188/431 (43%), Gaps = 35/431 (8%)
Query: 45 PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQD----DEYRVPKLNASFEFIS 100
P N +I DFSL+ +D HP ++ + P +R + DE PK + S +
Sbjct: 501 PELNPYIPDDFSLIKADKAY-KHPELIVDEPGLRVVYMPSQYFADE---PKADISLVLRN 556
Query: 101 PYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSV 160
P A + L L AL++ S A + G+++ + G+M+ +GY+ +
Sbjct: 557 PKAMDSARNQVLFALNDYLAGLALDQLSNQASVGGISFSTNANN-GLMVNANGYTQRLPQ 615
Query: 161 LLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLC----LFERA 216
LL +L+ F+ ++ K Y L + E + Y+ AI + FER
Sbjct: 616 LLQALLEGYFSFT--PTEEQLAQAKSWYREQLDSAEKGKAYEQAIMPAQMLSQVPYFERD 673
Query: 217 WSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGN-ANKQVGLSIVKMLEEKLQTKL 275
E + L IT + ++ + LLS E L+ GN +QV L +Q +L
Sbjct: 674 ----ERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQV-----TTLARDVQKQL 724
Query: 276 KAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQEL----RDNVLLE 331
A ++ R +++ + +K ++ +E + S+ Y G E ++L +
Sbjct: 725 GADG---TEWWRGKDVVVDKKQSVNFEKAGSSTDSALAAVYVPTGYDEYQSSAYSSLLGQ 781
Query: 332 LFYPIPDEHTHYQEQLGYIVVSGIRKSSGVQ-GLRIIVQS-DKHPLFVDSRIEAFLAQMK 389
+ P +EQLGY V S G Q G+ ++QS DK P ++ R +AF Q +
Sbjct: 782 IIQPWFYNQLRTEEQLGY-AVFAFPMSVGRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAE 840
Query: 390 DLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSV 449
+ M EEF +++AL Q L+ P+ L +SR + FD + +A +K +
Sbjct: 841 AKLRAMKPEEFAQYQQALINQLLQAPQTLGEEASRLSKDFDRGNMRFDSRDKIIAQIKLL 900
Query: 450 TKENVLKFYDK 460
T + + F+ +
Sbjct: 901 TPQKLADFFHQ 911
Score = 32.6 bits (75), Expect = 0.48
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 20 IVKSEFDKREYRGLELQNGM 39
I KSE D R+Y+ + L NGM
Sbjct: 34 IRKSEKDPRQYQAIRLDNGM 53
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.
Peptidase M16 consists of two structurally related
domains. One is the active peptidase, whereas the other
is inactive. The two domains hold the substrate like a
clamp.
Length = 182
Score = 48.6 bits (116), Expect = 9e-07
Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 30/195 (15%)
Query: 229 ITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRF 288
+TRE L +F S + ++ G+ + L++ EK L A P P
Sbjct: 2 LTREDLKDFYKKHYSPDNMVLVVVGDVDLDELLALA----EKYFGDLPASPPKPKPREPP 57
Query: 289 REIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRD----NVLLELFYPIPDEHTHY- 343
E + +V ++ V ++ A+ + D +VL EL
Sbjct: 58 LEPEELTGKEVVVPDKD-VPQAKLALAFPGPPLGNDPDSAALDVLAELL-----GGGASS 111
Query: 344 --------QEQLGYIVVSGIR--KSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLIS 393
+E L Y V + +G+ G+ + + +D IE ++K L
Sbjct: 112 RLFQELREKEGLAYSVSAFFDSYSDTGLFGIYADLDPEN----LDEVIELIFEELKKLAE 167
Query: 394 N-MPDEEFQSHKEAL 407
+ +EE + K L
Sbjct: 168 EGITEEELERAKAQL 182
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
peptidase PqqF. In a subset of species that make
coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
peptidase is found in the PQQ biosynthesis region and is
thought to act as a protease on PqqA (TIGR02107), a
probable peptide precursor of the coenzyme. PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 696
Score = 36.4 bits (84), Expect = 0.037
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 32/98 (32%)
Query: 320 GVQEL----RDNVLLELFYPIPD----------------EHTHYQ-----EQLGYIVVSG 354
G L + LL LF P+P E +Q QLGY+V
Sbjct: 605 GWVPLACDGGEQALL-LFCPLPTADVASEAAWRLLAQLLEPPFFQRLRVELQLGYVVFCR 663
Query: 355 IRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLI 392
R+ + GL +QS P D+ L +K +
Sbjct: 664 YRRVADRDGLLFALQS---P---DASARELLQHIKRFL 695
>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed.
Length = 679
Score = 31.8 bits (73), Expect = 1.0
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 149 LGISGYS----HKQSVLLSKVLD---KLADFSNHIDP 178
L +SGYS Q LL V D L + S +DP
Sbjct: 54 LSLSGYSCDDLFLQDTLLDAVEDALATLVEASADLDP 90
>gnl|CDD|227263 COG4926, PblB, Phage-related protein [Function unknown].
Length = 698
Score = 29.9 bits (67), Expect = 4.0
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 317 YQCGV-QELRDNVLLELFYPIPDEHTHYQEQLGYIVVSGIRKSSGVQGLRI 366
Y+C + +E + LEL YPI Y+++ Y + S G Q I
Sbjct: 25 YECEITEEANGSYELELKYPIDGVFAEYRKEEMYGIKSDADDLDGYQLFEI 75
>gnl|CDD|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular
trafficking and secretion / Cell division and chromosome
partitioning].
Length = 646
Score = 29.5 bits (66), Expect = 4.1
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 182 EIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLES-LDGITREKLVEFSHD 240
E I +Y + Q + I + + + +DG+ +E+ +E
Sbjct: 550 EEIYSRYRMIILIQITPQLLSERVEEIYERAVNALFVRKSTRFAFIDGMDKEQYIEALVR 609
Query: 241 LLSKMFIEALIHGNANKQVGLSIVKMLEE 269
L+ GN L K LEE
Sbjct: 610 LIDNGRNGDRAEGNLAL---LYEKKPLEE 635
>gnl|CDD|162743 TIGR02172, Fb_sc_TIGR02172, Fibrobacter succinogenes paralogous
family TIGR02172. This model describes a paralogous
family of five proteins, likely to be enzymes, in the
rumen bacterium Fibrobacter succinogenes S85. Members
show homology to proteins described by pfam01636, a
phosphotransferase enzyme family associated with
resistance to aminoglycoside antibiotics. However,
members of this family score below the current trusted
and noise cutoffs for pfam01636.
Length = 226
Score = 29.0 bits (65), Expect = 4.2
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 292 KIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYP-------------IPD 338
++ E + + E +H + C + +Q +++R + + F P +PD
Sbjct: 92 RLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPD 151
Query: 339 EHT--HYQEQLGYIVVSGIR 356
T H Q+G ++ SG
Sbjct: 152 TSTCLHGDFQIGNLITSGKG 171
>gnl|CDD|131951 TIGR02905, spore_yutH, spore coat protein YutH. Members of this
family are homologs of the Bacillus subtilis spore coat
protein CotS. Members of this family, designated YutH,
are found only in the family Bacillaceae from among the
endospore-forming members of the Firmicutes branch of
the Bacteria [Cellular processes, Sporulation and
germination].
Length = 313
Score = 29.3 bits (66), Expect = 4.7
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 15/44 (34%)
Query: 307 VHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTHYQEQLGYI 350
+H IE YY + E Y++QL +
Sbjct: 271 LHYFETIENYYIA---------------QLEHERREYEKQLQRL 299
>gnl|CDD|236834 PRK11067, PRK11067, outer membrane protein assembly factor YaeT;
Provisional.
Length = 803
Score = 29.3 bits (66), Expect = 6.2
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 15/64 (23%)
Query: 94 ASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLS--NTKYGMMLGI 151
AS E I+P ++ + N + S F D G WD + NT Y G
Sbjct: 704 ASLELITPTPFISDKYAN--SVRTSFFWD-----------MGTVWDTNWDNTAYTRAAGY 750
Query: 152 SGYS 155
YS
Sbjct: 751 PDYS 754
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,065,159
Number of extensions: 2373978
Number of successful extensions: 1952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1942
Number of HSP's successfully gapped: 27
Length of query: 469
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 369
Effective length of database: 6,502,202
Effective search space: 2399312538
Effective search space used: 2399312538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)