RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8002
         (469 letters)



>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli
           [TaxId: 562]}
          Length = 228

 Score =  130 bits (329), Expect = 5e-36
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 5/179 (2%)

Query: 287 RFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTHYQ-- 344
           R +++ + +K ++++E       S+    +   G  E   +    L   I     + Q  
Sbjct: 1   RNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLR 60

Query: 345 --EQLGYIVVSGIRKSSGVQGLRIIVQSDKH-PLFVDSRIEAFLAQMKDLISNMPDEEFQ 401
             EQLGY V +         G+  ++QS+   P F+  R +AF    +  +  M  +EF 
Sbjct: 61  TEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFA 120

Query: 402 SHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDK 460
             ++A+  Q L+ P+ L   +S+   +       FD  +  VA +K +T + +  F+ +
Sbjct: 121 QIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQ 179


>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli
           [TaxId: 562]}
          Length = 229

 Score =  123 bits (309), Expect = 2e-33
 Identities = 47/231 (20%), Positives = 99/231 (42%), Gaps = 5/231 (2%)

Query: 48  NEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYR-VPKLNASFEFISPYAYLD 106
           N +I  DFSL+ S+     HP ++ +   +R  +     +   PK + S    +P A   
Sbjct: 1   NPYIPDDFSLIKSEKKY-DHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDS 59

Query: 107 PECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVL 166
                M  L   L   AL++ S  A + G+++  +N   G+M+  +GY+ +   L   +L
Sbjct: 60  ARNQVMFALNDYLAGLALDQLSNQASVGGISFS-TNANNGLMVNANGYTQRLPQLFQALL 118

Query: 167 DKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESL 226
           +    +       + E  K  Y + + + E  + ++ AI    +      +S+ E  + L
Sbjct: 119 EGYFSY--TATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKIL 176

Query: 227 DGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKA 277
             IT ++++ +   L S    E ++ GN  +    ++ + ++++L      
Sbjct: 177 PSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSE 227


>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli
          [TaxId: 562]}
          Length = 240

 Score = 35.9 bits (81), Expect = 0.007
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 18 NNIVKSEFDKREYRGLELQNGMKKWTNPSPN 48
            I KS+ D R+Y+ + L NGM       P 
Sbjct: 9  ETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQ 39


>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 108

 Score = 26.2 bits (57), Expect = 4.2
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 412 LEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTK 451
           L  PKK    +   +  +  ++   DR ++ + YLK   +
Sbjct: 73  LTNPKKYIPGTKMAFGGLKKEK---DRNDL-ITYLKKACE 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,759,386
Number of extensions: 85031
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 10
Length of query: 469
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,185,626
Effective search space: 450537880
Effective search space used: 450537880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)