BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8006
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B)
pdb|3LM5|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B) IN Complex With Quercetin
Length = 327
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 54/70 (77%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
GK+A VR+C + G +YAAKFL+K+RR D +AEILHE+AVLE + R++ LH+V+E
Sbjct: 40 GKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYE 99
Query: 76 SSHDMILLLE 85
++ ++IL+LE
Sbjct: 100 NTSEIILILE 109
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein
Kinase 3 (Dapk3) In Complex With A Beta-Carboline
Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein
Kinase 3 (Dapk3) In Complex With An Imidazo-Pyridazine
Ligand
Length = 283
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A VR+CR + G +YAAKF++K+R S+ + EI EV +L R + I+ LH
Sbjct: 16 GQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIR-HPNIITLH 74
Query: 72 QVFESSHDMILLLELLTSA 90
+FE+ D++L+LEL++
Sbjct: 75 DIFENKTDVVLILELVSGG 93
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A VR+CR + G +YAAKF++K+R S+ + EI EV +L R + I+ LH
Sbjct: 23 GQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIR-HPNIITLH 81
Query: 72 QVFESSHDMILLLELLTSA 90
+FE+ D++L+LEL++
Sbjct: 82 DIFENKTDVVLILELVSGG 100
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
GK+A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GKFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 81 EVYENKTDVILILELVAGG 99
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKR----RSTDLKAEILHEVAVLEACRCNSRIVQLH 71
G++A VR+CR + G +YAAKF++K+R R + EI EV +L R + I+ LH
Sbjct: 37 GQFAIVRKCRQKGTGKEYAAKFIKKRRLXSSRRGVSREEIEREVNILREIR-HPNIITLH 95
Query: 72 QVFESSHDMILLLELLTSA 90
+FE+ D++L+LEL++
Sbjct: 96 DIFENKTDVVLILELVSGG 114
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 81 EVYENKTDVILILELVAGG 99
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 81 EVYENKTDVILILELVAGG 99
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 21 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 79
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 80 EVYENKTDVILILELVAGG 98
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 81 EVYENKTDVILILELVAGG 99
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain
Of Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 21 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 79
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 80 EVYENKTDVILILELVAGG 98
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 81 EVYENKTDVILILELVAGG 99
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1)
In Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 81 EVYENKTDVILILELVAGG 99
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 81 EVYENKTDVILILELVAGG 99
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 81 EVYENKTDVILILELVAGG 99
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 81 EVYENKTDVILILELVAGG 99
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 81 EVYENKTDVILILELVAGG 99
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G +A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GVFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+LEL+
Sbjct: 81 EVYENKTDVILILELVAGG 99
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With
N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKA----EILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G QYAAKF++K+R + + +I EV++L+ + + ++ LH
Sbjct: 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ-HPNVITLH 80
Query: 72 QVFESSHDMILLLELLTSA 90
+V+E+ D+IL+ EL+
Sbjct: 81 EVYENKTDVILIGELVAGG 99
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKR----RSTDLKAEILHEVAVLEACRCNSRIVQLH 71
G++A V++CR++ G +YAAKF++K++ R + EI EV++L + I+ LH
Sbjct: 23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQV-LHPNIITLH 81
Query: 72 QVFESSHDMILLLELLTSA 90
V+E+ D++L+LEL++
Sbjct: 82 DVYENRTDVVLILELVSGG 100
>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|D Chain D, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|E Chain E, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|F Chain F, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|G Chain G, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|H Chain H, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
Length = 288
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKK-----RRSTDLKAEILHEVAVLEACRCNSRIVQL 70
G++A V++CR++ G +YAAKF++K+ RR + EI EV++L + ++ L
Sbjct: 23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVS-REEIEREVSILRQV-LHHNVITL 80
Query: 71 HQVFESSHDMILLLELLTSA 90
H V+E+ D++L+LEL++
Sbjct: 81 HDVYENRTDVVLILELVSGG 100
>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
Length = 321
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKK-----RRSTDLKAEILHEVAVLEACRCNSRIVQL 70
G++A V++CR++ G +YAAKF++K+ RR + EI EV++L + ++ L
Sbjct: 23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVS-REEIEREVSILRQV-LHHNVITL 80
Query: 71 HQVFESSHDMILLLELLTSA 90
H V+E+ D++L+LEL++
Sbjct: 81 HDVYENRTDVVLILELVSGG 100
>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|E Chain E, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|C Chain C, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|B Chain B, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|F Chain F, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|D Chain D, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|H Chain H, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|G Chain G, Human Death-Associated Kinase Drp-1, Mutant S308d D40
Length = 321
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKK-----RRSTDLKAEILHEVAVLEACRCNSRIVQL 70
G++A V++CR++ G +YAAKF++K+ RR + EI EV++L + ++ L
Sbjct: 23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVS-REEIEREVSILRQV-LHHNVITL 80
Query: 71 HQVFESSHDMILLLELLTSA 90
H V+E+ D++L+LEL++
Sbjct: 81 HDVYENRTDVVLILELVSGG 100
>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|D Chain D, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|E Chain E, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|F Chain F, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|G Chain G, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|H Chain H, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
Length = 321
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKK-----RRSTDLKAEILHEVAVLEACRCNSRIVQL 70
G++A V++CR++ G +YAAKF++K+ RR + EI EV++L + ++ L
Sbjct: 23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVS-REEIEREVSILRQV-LHHNVITL 80
Query: 71 HQVFESSHDMILLLELLTSA 90
H V+E+ D++L+LEL++
Sbjct: 81 HDVYENRTDVVLILELVSGG 100
>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
Length = 321
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKK-----RRSTDLKAEILHEVAVLEACRCNSRIVQL 70
G++A V++CR++ G +YAAKF++K+ RR + EI EV++L + ++ L
Sbjct: 23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVS-REEIEREVSILRQV-LHHNVITL 80
Query: 71 HQVFESSHDMILLLELLTSA 90
H V+E+ D++L+LEL++
Sbjct: 81 HDVYENRTDVVLILELVSGG 100
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G++ V +C + G + AAK + K R K E+ +E++V+ ++ ++QL+ FE
Sbjct: 100 GRFGQVHKCEETATGLKLAAKII--KTRGMKDKEEVKNEISVMNQLD-HANLIQLYDAFE 156
Query: 76 SSHDMILLLELLTSA--VDSKIRESF 99
S +D++L++E + D I ES+
Sbjct: 157 SKNDIVLVMEYVDGGELFDRIIDESY 182
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of
Msk1 In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of
Msk1 In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of
Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of
Msk1
Length = 325
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G ++ R+C +K+ +A K + K+ ++A E+ L+ C + IV+LH+VF
Sbjct: 22 GSFSICRKCVHKKSNQAFAVKIISKR-----MEANTQKEITALKLCEGHPNIVKLHEVFH 76
Query: 76 SSHDMILLLELLTSA 90
L++ELL
Sbjct: 77 DQLHTFLVMELLNGG 91
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G Y V CRD+ + A K +RK ST +++L EVAVL+ + I++L+ FE
Sbjct: 48 GAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLD-HPNIMKLYDFFE 106
Query: 76 SSHDMILLLE 85
+ L++E
Sbjct: 107 DKRNYYLVME 116
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G + V R +R G +AAKF+ S K + E+ + R + +V LH FE
Sbjct: 168 GAFGVVHRVTERATGNNFAAKFVMTPHESD--KETVRKEIQTMSVLR-HPTLVNLHDAFE 224
Query: 76 SSHDMILLLELLT 88
++M+++ E ++
Sbjct: 225 DDNEMVMIYEFMS 237
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G + V R +R G +AAKF+ S K + E+ + R + +V LH FE
Sbjct: 62 GAFGVVHRVTERATGNNFAAKFVMTPHESD--KETVRKEIQTMSVLR-HPTLVNLHDAFE 118
Query: 76 SSHDMILLLELLT 88
++M+++ E ++
Sbjct: 119 DDNEMVMIYEFMS 131
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G + V RC ++ G + AKF+ K + +E++++ + +++ LH FE
Sbjct: 62 GAFGVVHRCVEKATGRVFVAKFINTPYPLD--KYTVKNEISIMNQLH-HPKLINLHDAFE 118
Query: 76 SSHDMILLLELLT--------SAVDSKIRES 98
++M+L+LE L+ +A D K+ E+
Sbjct: 119 DKYEMVLILEFLSGGELFDRIAAEDYKMSEA 149
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G YA V+ +NG +YA K + K+ + ++ + EV L C+ N I++L + FE
Sbjct: 24 GAYAKVQGAVSLQNGKEYAVKIIEKQAGHS--RSRVFREVETLYQCQGNKNILELIEFFE 81
Query: 76 SSHDMILLLELLTSA 90
L+ E L
Sbjct: 82 DDTRFYLVFEKLQGG 96
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G++ V RC + + Y AKF++ K TD + + E+++L R + I+ LH+ FE
Sbjct: 16 GEFGIVHRCVETSSKKTYMAKFVKVK--GTD-QVLVKKEISILNIAR-HRNILHLHESFE 71
Query: 76 SSHDMILLLELLTS 89
S +++++ E ++
Sbjct: 72 SMEELVMIFEFISG 85
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKR-RSTDLKAEILHEVAVLEACRCNSRIVQLHQVF 74
G Y V C+D+ G + A K ++K +T +L EVAVL+ + I++L++ F
Sbjct: 32 GAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLD-HPNIMKLYEFF 90
Query: 75 ESSHDMILLLEL 86
E + L++E+
Sbjct: 91 EDKRNYYLVMEV 102
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKR-RSTDLKAEILHEVAVLEACRCNSRIVQLHQVF 74
G Y V C+D+ G + A K ++K +T +L EVAVL+ + I++L++ F
Sbjct: 15 GAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLD-HPNIMKLYEFF 73
Query: 75 ESSHDMILLLEL 86
E + L++E+
Sbjct: 74 EDKRNYYLVMEV 85
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G + V +C+DR +YA K + K + IL EV +L+ + I++L ++ E
Sbjct: 33 GSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLD-HPNIMKLFEILE 91
Query: 76 SSHDMILLLELLTSA 90
S ++ EL T
Sbjct: 92 DSSSFYIVGELYTGG 106
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G + V +C+DR +YA K + K + IL EV +L+ + I++L ++ E
Sbjct: 33 GSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLD-HPNIMKLFEILE 91
Query: 76 SSHDMILLLELLTSA 90
S ++ EL T
Sbjct: 92 DSSSFYIVGELYTGG 106
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G + V +C+DR +YA K + K + IL EV +L+ + I++L ++ E
Sbjct: 33 GSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLD-HPNIMKLFEILE 91
Query: 76 SSHDMILLLELLTSA 90
S ++ EL T
Sbjct: 92 DSSSFYIVGELYTGG 106
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 15 MGKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVF 74
+G Y+ +RC + +YA K + K +R + EIL + I+ L V+
Sbjct: 37 VGSYSECKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQ------HPNIITLKDVY 90
Query: 75 ESSHDMILLLELLTSA--VDSKIRESFGSKSES 105
+ + L+ EL+ +D +R+ F S+ E+
Sbjct: 91 DDGKHVYLVTELMRGGELLDKILRQKFFSEREA 123
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 15 MGKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVF 74
+G Y+ +RC + +YA K + K +R + EIL + I+ L V+
Sbjct: 37 VGSYSECKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQ------HPNIITLKDVY 90
Query: 75 ESSHDMILLLELLTSA--VDSKIRESFGSKSES 105
+ + L+ EL+ +D +R+ F S+ E+
Sbjct: 91 DDGKHVYLVTELMRGGELLDKILRQKFFSEREA 123
>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino(
Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6-
Difluoro-Phenyl)-Amide)
Length = 349
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 14 DMGKYAT--VRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLH 71
++G+ AT V RC+ + YA K L+K T K + E+ VL + I++L
Sbjct: 60 ELGRGATSIVYRCKQKGTQKPYALKVLKK----TVDKKIVRTEIGVLLRL-SHPNIIKLK 114
Query: 72 QVFESSHDMILLLELLTSA 90
++FE+ ++ L+LEL+T
Sbjct: 115 EIFETPTEISLVLELVTGG 133
>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
Length = 361
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 16 GKYATVRRCRDRKNGTQYAAKF--LRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQV 73
G ++ VRRC +R+ G Q+A K + K S L E L A + + IV+L +
Sbjct: 37 GPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLET 96
Query: 74 FESSHDMILLLELLTSA 90
+ S + ++ E + A
Sbjct: 97 YSSDGMLYMVFEFMDGA 113
>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0G|B Chain B, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0H|A Chain A, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0H|B Chain B, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0I|A Chain A, Cask Cam-Kinase Domain- 3'-Amp Complex, P212121 Form
Length = 351
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 16 GKYATVRRCRDRKNGTQYAAKF--LRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQV 73
G ++ VRRC +R+ G Q+A K + K S L E L A + + IV+L +
Sbjct: 35 GPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLET 94
Query: 74 FESSHDMILLLELLTSA 90
+ S + ++ E + A
Sbjct: 95 YSSDGMLYMVFEFMDGA 111
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQLHQV 73
G ++ VRRC G +YAAK + K+ S ++ E + CR + IV+LH
Sbjct: 15 GAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARI---CRLLKHPNIVRLHDS 71
Query: 74 FESSHDMILLLELLTSA---VDSKIRESFGSKSESGVQNCLE 112
L+ +L+T D RE + SE+ +C++
Sbjct: 72 ISEEGFHYLVFDLVTGGELFEDIVAREYY---SEADASHCIQ 110
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQLHQV 73
G ++ VRRC G +YAAK + K+ S ++ E + CR + IV+LH
Sbjct: 15 GAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARI---CRLLKHPNIVRLHDS 71
Query: 74 FESSHDMILLLELLTSA---VDSKIRESFGSKSESGVQNCLE 112
L+ +L+T D RE + SE+ +C++
Sbjct: 72 ISEEGFHYLVFDLVTGGELFEDIVAREYY---SEADASHCIQ 110
>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native
pdb|3MFS|A Chain A, Cask-4m Cam Kinase Domain, Amppnp
pdb|3MFT|A Chain A, Cask-4m Cam Kinase Domain, Mn2+
pdb|3MFU|A Chain A, Cask-4m Cam Kinase Domain, Amppnp-Mn2+
Length = 351
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 16 GKYATVRRCRDRKNGTQYAAKF--LRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQV 73
G ++ VRRC +R+ G Q+A K + K S L E L A + + IV+L +
Sbjct: 35 GAFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLET 94
Query: 74 FESSHDMILLLELLTSA 90
+ S + ++ E + A
Sbjct: 95 YSSDGMLYMVFEFMDGA 111
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQLHQV 73
G ++ VRRC G +YAAK + K+ S ++ E + CR + IV+LH
Sbjct: 33 GAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREARI---CRLLKHPNIVRLHDS 89
Query: 74 FESSHDMILLLELLTSA---VDSKIRESFGSKSESGVQNCLE 112
L+ +L+T D RE + SE+ +C++
Sbjct: 90 ISEEGHHYLIFDLVTGGELFEDIVAREYY---SEADASHCIQ 128
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 14 DMGK--YATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQ 69
D+GK ++ VRRC G +YAAK + K+ S ++ E + CR +S IV+
Sbjct: 11 DIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLEREARI---CRLLKHSNIVR 67
Query: 70 LHQVFESSHDMILLLELLTSA---VDSKIRESFGSKSESGVQNCLE 112
LH L+ +L+T D RE + SE+ +C++
Sbjct: 68 LHDSISEEGFHYLVFDLVTGGELFEDIVAREYY---SEADASHCIQ 110
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G + V +R +G + K + K R ++ +I E+ VL++ + I+++ +VFE
Sbjct: 33 GAFGDVHLVEERSSGLERVIKTINKDRSQVPME-QIEAEIEVLKSLD-HPNIIKIFEVFE 90
Query: 76 SSHDMILLLE 85
H+M +++E
Sbjct: 91 DYHNMYIVME 100
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 16 GKYATVRRCRDRKNGTQYAA-KFL---------RKKRRSTDLKAEILHE--VAVLEACRC 63
G Y V +CR++ G A KFL + R L ++ HE V +LE C+
Sbjct: 36 GSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKK 95
Query: 64 NSRIVQLHQVFE-SSHDMILLLELLTSAVDSKIRESFGSKSESGVQNC 110
R + VFE H ++ LEL + +D ++ + + + +G+ C
Sbjct: 96 KKR---WYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFC 140
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQLHQV 73
G ++ VRRC G +YAA + K+ S ++ E + CR + IV+LH
Sbjct: 22 GAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARI---CRLLKHPNIVRLHDS 78
Query: 74 FESSHDMILLLELLTSA---VDSKIRESFGSKSESGVQNCLE 112
L+ +L+T D RE + SE+ +C++
Sbjct: 79 ISEEGHHYLIFDLVTGGELFEDIVAREYY---SEADASHCIQ 117
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACR--CNSRIVQLHQV 73
G ++ VRRC + G ++AAK + K+ S ++ E + CR + IV+LH
Sbjct: 17 GAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARI---CRKLQHPNIVRLHDS 73
Query: 74 FESSHDMILLLELLTSA---VDSKIRESFGSKSESGVQNCLE 112
+ L+ +L+T D RE + SE+ +C++
Sbjct: 74 IQEESFHYLVFDLVTGGELFEDIVAREFY---SEADASHCIQ 112
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACR--CNSRIVQLHQV 73
G ++ VRRC + G ++AAK + K+ S ++ E + CR + IV+LH
Sbjct: 16 GAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARI---CRKLQHPNIVRLHDS 72
Query: 74 FESSHDMILLLELLTSA---VDSKIRESFGSKSESGVQNCLE 112
+ L+ +L+T D RE + SE+ +C++
Sbjct: 73 IQEESFHYLVFDLVTGGELFEDIVAREFY---SEADASHCIQ 111
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACR--CNSRIVQLHQV 73
G ++ VRRC + G ++AAK + K+ S ++ E + CR + IV+LH
Sbjct: 17 GAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARI---CRKLQHPNIVRLHDS 73
Query: 74 FESSHDMILLLELLTSA---VDSKIRESFGSKSESGVQNCLE 112
+ L+ +L+T D RE + SE+ +C++
Sbjct: 74 IQEESFHYLVFDLVTGGELFEDIVAREFY---SEADASHCIQ 112
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACR--CNSRIVQLHQV 73
G ++ VRRC + G ++AAK + K+ S ++ E + CR + IV+LH
Sbjct: 40 GAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARI---CRKLQHPNIVRLHDS 96
Query: 74 FESSHDMILLLELLTSA---VDSKIRESFGSKSESGVQNCLE 112
+ L+ +L+T D RE + SE+ +C++
Sbjct: 97 IQEESFHYLVFDLVTGGELFEDIVAREFY---SEADASHCIQ 135
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 15 MGKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVF 74
+G Y+ +RC + ++A K + K +R + EIL + I+ L V+
Sbjct: 32 VGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYG------QHPNIITLKDVY 85
Query: 75 ESSHDMILLLELLTSA--VDSKIRESFGSKSES 105
+ + ++ EL+ +D +R+ F S+ E+
Sbjct: 86 DDGKYVYVVTELMKGGELLDKILRQKFFSEREA 118
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 15 MGKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVF 74
+G Y+ +RC + ++A K + K +R + EIL + I+ L V+
Sbjct: 32 VGSYSVCKRCIHKATNXEFAVKIIDKSKRDPTEEIEILLRYG------QHPNIITLKDVY 85
Query: 75 ESSHDMILLLELLTSA--VDSKIRESFGSKSES 105
+ + ++ EL +D +R+ F S+ E+
Sbjct: 86 DDGKYVYVVTELXKGGELLDKILRQKFFSEREA 118
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQLHQV 73
G ++ VRRC + +YAAK + K+ S ++ E + CR + IV+LH
Sbjct: 42 GAFSVVRRCVKKTPTQEYAAKIINTKKLSARDHQKLEREARI---CRLLKHPNIVRLHDS 98
Query: 74 FESSHDMILLLELLTSA---VDSKIRESFGSKSESGVQNCL 111
L+ +L+T D RE + SE+ +C+
Sbjct: 99 ISEEGFHYLVFDLVTGGELFEDIVAREYY---SEADASHCI 136
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRK-----KRRSTDLKAEILHEVAVLEACRCNSRIVQL 70
GK VR+ G YA K L+K K ++T+ E VLE R + +V L
Sbjct: 68 GKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTE---HTRTERQVLEHIRQSPFLVTL 124
Query: 71 HQVFESSHDMILLLELLTSA 90
H F++ + L+L+ +
Sbjct: 125 HYAFQTETKLHLILDYINGG 144
>pdb|2FSE|B Chain B, Crystallographic Structure Of A Rheumatoid Arthritis Mhc
Susceptibility Allele, Hla-Dr1 (Drb10101), Complexed
With The Immunodominant Determinant Of Human Type Ii
Collagen
pdb|2FSE|D Chain D, Crystallographic Structure Of A Rheumatoid Arthritis Mhc
Susceptibility Allele, Hla-Dr1 (Drb10101), Complexed
With The Immunodominant Determinant Of Human Type Ii
Collagen
Length = 187
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 83 LLELLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSSLSK 123
LLE +AVD+ R ++G VQ +EP+++V+ + ++
Sbjct: 64 LLEQRRAAVDTYCRHNYGVGESFTVQRRVEPTVTVYPTKTQ 104
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 15 MGKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQLHQ 72
+G Y TV + RD +G A K +R L + EVA+L + +V+L
Sbjct: 14 VGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEHPNVVRLMD 73
Query: 73 VFESSH-DMILLLELLTSAVDSKIRESFGSKSESGVQ 108
V +S D + + L+ VD +R G+
Sbjct: 74 VCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLP 110
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 15 MGKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQLHQ 72
+G Y TV + RD +G A K +R L + EVA+L + +V+L
Sbjct: 14 VGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEHPNVVRLMD 73
Query: 73 VFESSH-DMILLLELLTSAVDSKIRESFGSKSESGVQ 108
V +S D + + L+ VD +R G+
Sbjct: 74 VCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLP 110
>pdb|3L6F|B Chain B, Structure Of Mhc Class Ii Molecule Hla-Dr1 Complexed With
Phosphopeptide Mart-1
pdb|3S4S|B Chain B, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S4S|E Chain E, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|B Chain B, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|E Chain E, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 193
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 83 LLELLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSSLSK 123
LLE +AVD+ R ++G VQ +EP ++V+ S ++
Sbjct: 68 LLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQ 108
>pdb|1DLH|B Chain B, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1DLH|E Chain E, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1KG0|B Chain B, Structure Of The Epstein-Barr Virus Gp42 Protein Bound To
The Mhc Class Ii Receptor Hla-Dr1
Length = 188
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 83 LLELLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSSLSK 123
LLE +AVD+ R ++G VQ +EP ++V+ S ++
Sbjct: 65 LLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQ 105
>pdb|1SEB|B Chain B, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1SEB|F Chain F, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1FYT|B Chain B, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr1
Length = 192
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 83 LLELLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSSLSK 123
LLE +AVD+ R ++G VQ +EP ++V+ S ++
Sbjct: 67 LLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQ 107
>pdb|1HXY|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin H In
Complex With Human Mhc Class Ii
pdb|1KLG|B Chain B, Crystal Structure Of Hla-Dr1TPI(23-37, Thr28-->ile Mutant)
Complexed With Staphylococcal Enterotoxin C3 Variant 3b2
(Sec3-3b2)
pdb|1KLU|B Chain B, Crystal Structure Of Hla-Dr1TPI(23-37) Complexed With
Staphylococcal Enterotoxin C3 Variant 3b2 (Sec3-3b2)
pdb|1LO5|B Chain B, Crystal Structure Of The D227a Variant Of Staphylococcal
Enterotoxin A In Complex With Human Mhc Class Ii
pdb|1JWM|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1(Ha Peptide 306-318) With The
Superantigen Sec3
pdb|1JWS|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b1
pdb|1JWU|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b2
pdb|1PYW|B Chain B, Human Class Ii Mhc Protein Hla-Dr1 Bound To A Designed
Peptide Related To Influenza Virus Hemagglutinin,
Fvkqna(Maa)al, In Complex With Staphylococcal
Enterotoxin C3 Variant 3b2 (Sec3-3b2)
pdb|1R5I|B Chain B, Crystal Structure Of The Mam-Mhc Complex
pdb|1R5I|F Chain F, Crystal Structure Of The Mam-Mhc Complex
pdb|1SJE|B Chain B, Hla-Dr1 Complexed With A 16 Residue Hiv Capsid Peptide
Bound In A Hairpin Conformation
pdb|1SJH|B Chain B, Hla-Dr1 Complexed With A 13 Residue Hiv Capsid Peptide
pdb|1T5W|B Chain B, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
pdb|1T5W|E Chain E, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
pdb|1T5X|B Chain B, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr) And The Superantigen Sec3-3b2
pdb|2G9H|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin I (Sei) In
Complex With A Human Mhc Class Ii Molecule
pdb|2OJE|B Chain B, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
pdb|2OJE|F Chain F, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
pdb|2IAM|B Chain B, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|B Chain B, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|G Chain G, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|L Chain L, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|Q Chain Q, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2ICW|B Chain B, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2ICW|E Chain E, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2IPK|B Chain B, Crystal Structure Of The Mhc Class Ii Molecule Hla-Dr1 In
Complex With The Fluorogenic Peptide, Acpkxvkqntlklat
(X3-
[5-(Dimethylamino)-1,3-Dioxo-1,
3-Dihydro-2h-Isoindol-2-Yl]- L-Alanine) And The
Superantigen, Sec3 Variant 3b2
pdb|2XN9|E Chain E, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|3QXA|B Chain B, Hla-Dr1 Bound With Clip Peptide
pdb|3QXA|E Chain E, Hla-Dr1 Bound With Clip Peptide
pdb|3QXD|B Chain B, F54c Hla-Dr1 Bound With Clip Peptide
pdb|3QXD|E Chain E, F54c Hla-Dr1 Bound With Clip Peptide
pdb|4E41|B Chain B, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|G Chain G, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 190
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 83 LLELLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSSLSK 123
LLE +AVD+ R ++G VQ +EP ++V+ S ++
Sbjct: 67 LLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQ 107
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 15 MGKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQLHQ 72
+G Y TV + RD +G A K +R L + EVA+L + +V+L
Sbjct: 14 VGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEHPNVVRLMD 73
Query: 73 VFESSH-DMILLLELLTSAVDSKIRESFGSKSESGVQ 108
V +S D + + L+ VD +R G+
Sbjct: 74 VCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLP 110
>pdb|4AH2|B Chain B, Hla-Dr1 With Covalently Linked Clip106-120 In Canonical
Orientation
Length = 229
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 83 LLELLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSS 120
LLE +AVD+ R ++G VQ +EP ++V+ S
Sbjct: 98 LLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPS 135
>pdb|3PDO|B Chain B, Crystal Structure Of Hla-Dr1 With Clip102-120
pdb|3PGC|B Chain B, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGC|E Chain E, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGD|B Chain B, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|3PGD|E Chain E, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|4AEN|B Chain B, Hla-Dr1 With Covalently Linked Clip106-120 In Reversed
Orientation
Length = 199
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 83 LLELLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSSLSK 123
LLE +AVD+ R ++G VQ +EP ++V+ S ++
Sbjct: 68 LLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQ 108
>pdb|1AQD|B Chain B, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|E Chain E, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|H Chain H, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|K Chain K, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
Length = 198
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 83 LLELLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSSLSK 123
LLE +AVD+ R ++G VQ +EP ++V+ S ++
Sbjct: 67 LLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQ 107
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G Y V + R +++G YA K R +A L EV E + V+L Q +E
Sbjct: 68 GSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWE 127
Query: 76 SSHDMILLLELLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSSL 121
+ L EL ++ S E+ V L ++ + L
Sbjct: 128 EGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHL 173
>pdb|4FQX|B Chain B, Crystal Structure Of Hla-Dm Bound To Hla-Dr1
pdb|4GBX|B Chain B, Crystal Structure Of An Immune Complex At Ph 6.5
Length = 208
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 83 LLELLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSS 120
LLE +AVD+ R ++G VQ +EP ++V+ S
Sbjct: 73 LLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPS 110
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 16 GKYATVRRCRDRKNGTQYAA-KFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQLHQ 72
G Y V + RD KNG ++ A K +R + + + EVAVL + +V+L
Sbjct: 22 GAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFD 81
Query: 73 VFESSH-DMILLLELLTSAVDSKIRESFGSKSESGVQN 109
V S D L L+ VD + E GV
Sbjct: 82 VCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPT 119
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 16 GKYATVRRCRDRKNGTQYAA-KFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQLHQ 72
G Y V + RD KNG ++ A K +R + + + EVAVL + +V+L
Sbjct: 22 GAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFD 81
Query: 73 VFESSH-DMILLLELLTSAVDSKIRESFGSKSESGVQN 109
V S D L L+ VD + E GV
Sbjct: 82 VCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPT 119
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 16 GKYATVRRCRDRKNGTQYAA-KFLRKKRRSTDLKAEILHEVAVLEACRC--NSRIVQLHQ 72
G Y V + RD KNG ++ A K +R + + + EVAVL + +V+L
Sbjct: 22 GAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFD 81
Query: 73 VFESSH-DMILLLELLTSAVDSKIRESFGSKSESGVQN 109
V S D L L+ VD + E GV
Sbjct: 82 VCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPT 119
>pdb|1BX2|B Chain B, Crystal Structure Of Hla-Dr2 (Dra0101,Drb11501) Complexed
With A Peptide From Human Myelin Basic Protein
pdb|1BX2|E Chain E, Crystal Structure Of Hla-Dr2 (Dra0101,Drb11501) Complexed
With A Peptide From Human Myelin Basic Protein
Length = 191
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 29 NGTQ---YAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFESSHDMILLLE 85
NGT+ + ++ + S +++ AV E R ++ + + S D +LE
Sbjct: 17 NGTERVRFLDRYFYNQEESVRFDSDVGEFRAVTELGRPDA------EYWNSQKD---ILE 67
Query: 86 LLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSSLSK 123
+AVD+ R ++G VQ ++P ++V+ S ++
Sbjct: 68 QARAAVDTYCRHNYGVVESFTVQRRVQPKVTVYPSKTQ 105
>pdb|2WBJ|B Chain B, Tcr Complex
pdb|2WBJ|F Chain F, Tcr Complex
Length = 200
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 29 NGTQ---YAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFESSHDMILLLE 85
NGT+ + ++ + S +++ AV E R ++ + + S D +LE
Sbjct: 19 NGTERVRFLDRYFYNQEESVRFDSDVGEFRAVTELGRPDA------EYWNSQKD---ILE 69
Query: 86 LLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSSLSK 123
+AVD+ R ++G VQ ++P ++V+ S ++
Sbjct: 70 QARAAVDTYCRHNYGVVESFTVQRRVQPKVTVYPSKTQ 107
>pdb|1YMM|B Chain B, TcrHLA-Dr2bMBP-Peptide Complex
Length = 198
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 29 NGTQ---YAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFESSHDMILLLE 85
NGT+ + ++ + S +++ AV E R ++ + + S D +LE
Sbjct: 19 NGTERVRFLDRYFYNQEESVRFDSDVGEFRAVTELGRPDA------EYWNSQKD---ILE 69
Query: 86 LLTSAVDSKIRESFGSKSESGVQNCLEPSISVFSSLSK 123
+AVD+ R ++G VQ ++P ++V+ S ++
Sbjct: 70 QARAAVDTYCRHNYGVVESFTVQRRVQPKVTVYPSKTQ 107
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G + + ++G QY K + R S+ + E EVAVL + + IVQ + FE
Sbjct: 35 GSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMK-HPNIVQYRESFE 93
Query: 76 SSHDMILLLE 85
+ + ++++
Sbjct: 94 ENGSLYIVMD 103
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G Y V +CR+R G A K + +K L E+ +L+ + + +V L +VF
Sbjct: 14 GSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLK-HPNLVNLLEVFR 72
Query: 76 SSHDMILLLELLTSAV 91
+ L+ E V
Sbjct: 73 RKRRLHLVFEYCDHTV 88
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAE-ILHEVAVLEACRCNSRIVQLHQVF 74
G + V R ++ G YA K L+K D E + E +L R + + QL F
Sbjct: 34 GSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCF 93
Query: 75 ESSHDMILLLELLTSA 90
++ + ++E +
Sbjct: 94 QTPDRLFFVMEFVNGG 109
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein
Kinase Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/75 (18%), Positives = 35/75 (46%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFE 75
G + V R R NG YA K L+K+ + E ++ ++ + + I+++ F+
Sbjct: 17 GSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQ 76
Query: 76 SSHDMILLLELLTSA 90
+ + ++++ +
Sbjct: 77 DAQQIFMIMDYIEGG 91
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKKRRSTDLKAEILHEVAVLEACRC---NSRIVQLHQ 72
G +A V R G + A K + KK KA ++ V C + I++L+
Sbjct: 22 GSFAGVYRAESIHTGLEVAIKMIDKKAM---YKAGMVQRVQNEVKIHCQLKHPSILELYN 78
Query: 73 VFESSHDMILLLEL 86
FE S+ + L+LE+
Sbjct: 79 YFEDSNYVYLVLEM 92
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 16 GKYATVRRCRDRKNGTQYAAKFLRKK-----RRSTDLK------AEILHEVAVLEACRCN 64
G Y V C+++ ++ A K ++K R S D K EI +E+++L++ +
Sbjct: 47 GAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLD-H 105
Query: 65 SRIVQLHQVFESSHDMILLLEL 86
I++L VFE L+ E
Sbjct: 106 PNIIKLFDVFEDKKYFYLVTEF 127
>pdb|3OLR|A Chain A, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|B Chain B, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|C Chain C, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|D Chain D, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OMH|A Chain A, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|B Chain B, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|C Chain C, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|D Chain D, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
Length = 313
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 32 QYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFESSHDMILLLELLTSAV 91
++A +FL+ KR+ST KA+ + V E + N + + + + + L L+TS
Sbjct: 42 EFANEFLKLKRQSTKYKADKTYPTTVAEKPK-NIKKNRYKDILPYDYSRV-ELSLITSDE 99
Query: 92 DSK------IRESFGSKSESGVQNCLEPSISVF 118
DS I+ +G K+ Q L ++ F
Sbjct: 100 DSSYINANFIKGVYGPKAYIATQGPLSTTLLDF 132
>pdb|2QCJ|A Chain A, Native Structure Of Lyp
pdb|2QCJ|B Chain B, Native Structure Of Lyp
pdb|2QCT|A Chain A, Structure Of Lyp With Inhibitor I-C11
pdb|2QCT|B Chain B, Structure Of Lyp With Inhibitor I-C11
Length = 313
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 32 QYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFESSHDMILLLELLTSAV 91
++A +FL+ KR+ST KA+ + V E + N + + + + + L L+TS
Sbjct: 42 EFANEFLKLKRQSTKYKADKTYPTTVAEKPK-NIKKNRYKDILPYDYSRV-ELSLITSDE 99
Query: 92 DSK------IRESFGSKSESGVQNCLEPSISVF 118
DS I+ +G K+ Q L ++ F
Sbjct: 100 DSSYINANFIKGVYGPKAYIATQGPLSTTLLDF 132
>pdb|3H2X|A Chain A, Crystal Structure Of The Human Lymphoid Tyrosine
Phosphatase Catalytic Domain
Length = 302
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 32 QYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFESSHDMILLLELLTSAV 91
++A +FL+ KR+ST KA+ + V E + N + + + + + L L+TS
Sbjct: 23 EFANEFLKLKRQSTKYKADKTYPTTVAEKPK-NIKKNRYKDILPYDYSRV-ELSLITSDE 80
Query: 92 DSK------IRESFGSKSESGVQNCLEPSISVF 118
DS I+ +G K+ Q L ++ F
Sbjct: 81 DSSYINANFIKGVYGPKAYIATQGPLSTTLLDF 113
>pdb|3BRH|A Chain A, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
pdb|3BRH|B Chain B, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
Length = 310
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 32 QYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFESSHDMILLLELLTSAV 91
++A +FL+ KR+ST KA+ + V E + N + + + + + L L+TS
Sbjct: 23 EFANEFLKLKRQSTKYKADKTYPTTVAEKPK-NIKKNRYKDILPYDYSRV-ELSLITSDE 80
Query: 92 DSK------IRESFGSKSESGVQNCLEPSISVF 118
DS I+ +G K+ Q L ++ F
Sbjct: 81 DSSYINANFIKGVYGPKAYIATQGPLSTTLLDF 113
>pdb|2P6X|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
pdb|2P6X|B Chain B, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
Length = 309
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 32 QYAAKFLRKKRRSTDLKAEILHEVAVLEACRCNSRIVQLHQVFESSHDMILLLELLTSAV 91
++A +FL+ KR+ST KA+ + V E + N + + + + + L L+TS
Sbjct: 23 EFANEFLKLKRQSTKYKADKTYPTTVAEKPK-NIKKNRYKDILPYDYSRV-ELSLITSDE 80
Query: 92 DSK------IRESFGSKSESGVQNCLEPSISVF 118
DS I+ +G K+ Q L ++ F
Sbjct: 81 DSSYINANFIKGVYGPKAYIATQGPLSTTLLDF 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,668,950
Number of Sequences: 62578
Number of extensions: 77196
Number of successful extensions: 281
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 95
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)