BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8011
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 105 bits (263), Expect = 5e-24, Method: Composition-based stats.
Identities = 43/76 (56%), Positives = 53/76 (69%)
Query: 27 ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 86
A+SVTWNPH ++ QCS L + + +L C+ ASYLFQ+DK YD YD+GDK IQC
Sbjct: 307 ANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQC 366
Query: 87 GRKPDVLKFWFMWKAK 102
GR D+ KFW MWKAK
Sbjct: 367 GRHVDIFKFWLMWKAK 382
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 27 ADSVTWNPHKLLTAPQQCSVFLTRHQS-VLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 85
ADSV WNPHKLL A QCS L + S +L CH + ASYLFQ+DKFYD D+GDK +Q
Sbjct: 318 ADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQ 377
Query: 86 CGRKPDVLKFWFMWKAK 102
CGR+ D LK W MWKA+
Sbjct: 378 CGRRVDCLKLWLMWKAQ 394
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%)
Query: 27 ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 86
A+SVTWNPH ++ P QCS L R + ++ C+ ASYLFQ+DK YD YD+GDK +QC
Sbjct: 300 ANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDKALQC 359
Query: 87 GRKPDVLKFWFMWKAK 102
GR DV K W MW+AK
Sbjct: 360 GRHVDVFKLWLMWRAK 375
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 102 bits (254), Expect = 6e-23, Method: Composition-based stats.
Identities = 42/76 (55%), Positives = 51/76 (67%)
Query: 27 ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 86
A+SVTWNPH ++ QCS L + + +L C+ A YLFQ DK YD YD+GDK IQC
Sbjct: 304 ANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQC 363
Query: 87 GRKPDVLKFWFMWKAK 102
GR D+ KFW MWKAK
Sbjct: 364 GRHVDIFKFWLMWKAK 379
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 26 LADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 85
ADS +NPHK L CS + ++ LT +YL K D+ + +H Q
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYL--KHSHQDSGLITDYRHWQ 350
Query: 86 C--GRKPDVLKFWFMWK 100
GR+ LK WF+++
Sbjct: 351 IPLGRRFRSLKMWFVFR 367
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 26 LADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 85
ADS +NPH L CS + ++ LT +YL K D+ + +H Q
Sbjct: 293 FADSFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYL--KHSHQDSGLITDYRHWQ 350
Query: 86 C--GRKPDVLKFWFMWK 100
GR+ LK WF+++
Sbjct: 351 IPLGRRFRSLKMWFVFR 367
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%)
Query: 26 LADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 85
ADS +NPHK L CS + ++ LT YL + D +
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLP 352
Query: 86 CGRKPDVLKFWFMWK 100
GR+ LK WF+++
Sbjct: 353 LGRRFRSLKMWFVFR 367
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 27 ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 86
ADS +NPH + CS + S + + YL K + D I
Sbjct: 293 ADSFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL--KHDMQGSAPDYRHWQIPL 350
Query: 87 GRKPDVLKFWFMWK 100
GR+ LK WF+ +
Sbjct: 351 GRRFRALKLWFVLR 364
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 27 ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 86
ADS T+NP K + C+ F + + L + S + YL + T D I
Sbjct: 300 ADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVAT--DFMHWQIPL 357
Query: 87 GRKPDVLKFWFMWKA 101
R+ +K WF+ ++
Sbjct: 358 SRRFRSVKLWFVIRS 372
>pdb|3DXC|A Chain A, Crystal Structure Of The Intracellular Domain Of Human
App In Complex With Fe65-Ptb2
pdb|3DXC|C Chain C, Crystal Structure Of The Intracellular Domain Of Human
App In Complex With Fe65-Ptb2
pdb|3DXD|A Chain A, Crystal Structure Of The Intracellular Domain Of Human
App (T668e Mutant) In Complex With Fe65-Ptb2
pdb|3DXD|C Chain C, Crystal Structure Of The Intracellular Domain Of Human
App (T668e Mutant) In Complex With Fe65-Ptb2
pdb|3DXE|A Chain A, Crystal Structure Of The Intracellular Domain Of Human
App (T668a Mutant) In Complex With Fe65-Ptb2
pdb|3DXE|C Chain C, Crystal Structure Of The Intracellular Domain Of Human
App (T668a Mutant) In Complex With Fe65-Ptb2
Length = 140
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 8 LPVSQAGGLDHFHQPRQVLADSVT---WNPHKLLTAPQQCSVFLTRHQSVLTECHSASAS 64
+PV++ G+D + + + S + W P + AP ++ + ++VL EC S
Sbjct: 18 VPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLS 77
Query: 65 YL 66
+L
Sbjct: 78 FL 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,293,442
Number of Sequences: 62578
Number of extensions: 107255
Number of successful extensions: 180
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 13
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)