Query psy8011
Match_columns 102
No_of_seqs 102 out of 1055
Neff 6.4
Searched_HMMs 46136
Date Sat Aug 17 00:32:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02590 probable tyrosine dec 99.9 2.9E-27 6.2E-32 193.1 5.3 90 12-102 332-421 (539)
2 PF00282 Pyridoxal_deC: Pyrido 99.9 8.5E-26 1.8E-30 177.0 2.1 88 13-101 240-327 (373)
3 PLN02880 tyrosine decarboxylas 99.9 4.6E-24 1E-28 172.2 5.0 88 13-101 285-372 (490)
4 KOG0628|consensus 99.9 1.3E-24 2.8E-29 173.9 -0.6 88 12-102 280-367 (511)
5 TIGR03811 tyr_de_CO2_Ent tyros 99.8 1.4E-21 3.1E-26 161.5 5.0 85 13-101 361-446 (608)
6 KOG0629|consensus 99.8 2.1E-21 4.5E-26 154.7 1.0 87 15-102 301-387 (510)
7 TIGR03799 NOD_PanD_pyr putativ 99.8 4.9E-20 1.1E-24 150.1 5.0 83 12-101 310-392 (522)
8 PLN02263 serine decarboxylase 99.7 6.5E-17 1.4E-21 130.7 5.2 68 22-102 287-355 (470)
9 PLN03032 serine decarboxylase; 99.5 6.2E-15 1.3E-19 116.2 5.6 67 23-102 221-288 (374)
10 COG0076 GadB Glutamate decarbo 99.5 6.6E-15 1.4E-19 118.7 5.4 72 22-101 262-334 (460)
11 TIGR01788 Glu-decarb-GAD gluta 99.5 3.6E-14 7.8E-19 113.5 4.7 77 14-101 241-318 (431)
12 PRK02769 histidine decarboxyla 99.3 1.6E-12 3.5E-17 102.4 5.6 66 23-101 218-284 (380)
13 KOG1383|consensus 97.6 5.2E-05 1.1E-09 61.8 2.9 70 23-101 276-346 (491)
14 PRK13520 L-tyrosine decarboxyl 97.3 0.00056 1.2E-08 52.1 5.1 66 24-100 208-274 (371)
15 TIGR03812 tyr_de_CO2_Arch tyro 97.2 0.00065 1.4E-08 51.9 4.9 65 25-100 214-279 (373)
16 TIGR03531 selenium_SpcS O-phos 97.2 0.00037 8.1E-09 56.5 3.6 45 12-56 247-293 (444)
17 cd06450 DOPA_deC_like DOPA dec 96.8 0.00027 5.7E-09 53.4 -0.0 28 23-50 203-230 (345)
18 PRK04366 glycine dehydrogenase 95.9 0.013 2.9E-07 47.5 4.7 30 23-52 258-292 (481)
19 PRK05367 glycine dehydrogenase 95.7 0.012 2.5E-07 52.0 3.9 29 23-51 690-723 (954)
20 TIGR00461 gcvP glycine dehydro 95.2 0.044 9.5E-07 48.4 5.5 72 23-101 678-758 (939)
21 TIGR01977 am_tr_V_EF2568 cyste 94.8 0.025 5.4E-07 43.2 2.9 29 25-53 188-216 (376)
22 PLN02651 cysteine desulfurase 94.3 0.031 6.7E-07 43.0 2.3 26 27-53 191-216 (364)
23 COG0520 csdA Selenocysteine ly 93.7 0.051 1.1E-06 43.6 2.5 28 26-53 214-241 (405)
24 PLN02724 Molybdenum cofactor s 92.2 0.11 2.3E-06 44.9 2.6 27 26-52 252-278 (805)
25 TIGR02006 IscS cysteine desulf 92.1 0.11 2.3E-06 40.7 2.2 27 26-53 194-220 (402)
26 cd01494 AAT_I Aspartate aminot 89.7 0.32 6.8E-06 32.1 2.4 26 24-50 145-170 (170)
27 TIGR03402 FeS_nifS cysteine de 89.6 0.26 5.6E-06 37.9 2.2 27 26-53 188-214 (379)
28 TIGR03235 DNA_S_dndA cysteine 89.2 0.29 6.4E-06 37.2 2.2 27 26-53 190-216 (353)
29 TIGR03403 nifS_epsilon cystein 88.6 0.36 7.8E-06 37.2 2.4 27 26-53 192-218 (382)
30 PTZ00094 serine hydroxymethylt 86.7 0.67 1.5E-05 37.1 3.0 28 24-52 233-260 (452)
31 PRK03080 phosphoserine aminotr 85.5 0.41 8.8E-06 37.4 1.2 30 24-53 182-211 (378)
32 cd06451 AGAT_like Alanine-glyo 83.9 0.7 1.5E-05 35.0 1.8 27 26-52 176-202 (356)
33 PRK14012 cysteine desulfurase; 83.2 0.93 2E-05 35.4 2.3 27 26-53 196-222 (404)
34 PF00266 Aminotran_5: Aminotra 82.7 0.96 2.1E-05 34.7 2.2 27 26-53 191-217 (371)
35 PLN02409 serine--glyoxylate am 81.7 0.99 2.1E-05 35.5 1.9 27 26-52 191-217 (401)
36 KOG1549|consensus 81.3 1 2.2E-05 36.8 1.9 25 26-51 233-257 (428)
37 PLN02271 serine hydroxymethylt 80.4 1.7 3.7E-05 36.9 2.9 28 24-52 349-376 (586)
38 cd06453 SufS_like Cysteine des 79.4 1.6 3.5E-05 33.2 2.4 26 26-52 191-216 (373)
39 TIGR01979 sufS cysteine desulf 79.1 1.6 3.5E-05 33.7 2.4 26 26-52 211-236 (403)
40 cd00613 GDC-P Glycine cleavage 77.7 1.7 3.7E-05 33.4 2.1 28 23-51 208-240 (398)
41 TIGR01814 kynureninase kynuren 76.5 2.6 5.7E-05 32.9 2.9 27 26-53 223-249 (406)
42 PLN03226 serine hydroxymethylt 74.6 2.8 6.1E-05 34.3 2.6 28 24-52 234-261 (475)
43 TIGR02326 transamin_PhnW 2-ami 71.0 3.1 6.7E-05 31.7 2.0 27 26-52 181-207 (363)
44 PRK09295 bifunctional cysteine 68.0 4.2 9.2E-05 31.7 2.2 26 26-52 216-241 (406)
45 PRK02948 cysteine desulfurase; 65.8 4.6 0.0001 31.0 2.0 26 26-52 190-215 (381)
46 PRK09331 Sep-tRNA:Cys-tRNA syn 64.7 5.4 0.00012 31.1 2.3 26 26-51 210-235 (387)
47 PLN02721 threonine aldolase 60.9 8.4 0.00018 28.9 2.6 29 24-54 196-224 (353)
48 TIGR00474 selA seryl-tRNA(sec) 59.4 8.5 0.00018 31.4 2.6 26 26-52 278-303 (454)
49 PRK13238 tnaA tryptophanase/L- 59.2 9.5 0.00021 31.0 2.8 30 25-55 249-278 (460)
50 COG1104 NifS Cysteine sulfinat 59.0 7.9 0.00017 31.3 2.3 28 27-55 194-221 (386)
51 cd06502 TA_like Low-specificit 57.5 13 0.00027 27.7 3.1 28 25-54 185-212 (338)
52 PRK13237 tyrosine phenol-lyase 57.2 14 0.0003 30.6 3.4 33 24-57 248-280 (460)
53 TIGR03301 PhnW-AepZ 2-aminoeth 56.7 8.3 0.00018 28.8 2.0 27 26-52 177-203 (355)
54 cd06452 SepCysS Sep-tRNA:Cys-t 54.9 10 0.00022 29.0 2.2 25 27-51 192-216 (361)
55 PLN02855 Bifunctional selenocy 54.4 11 0.00025 29.5 2.5 25 27-52 226-250 (424)
56 PLN02414 glycine dehydrogenase 54.4 11 0.00023 34.1 2.5 29 23-51 716-749 (993)
57 PRK04311 selenocysteine syntha 54.4 9.4 0.0002 31.3 2.0 26 26-52 283-308 (464)
58 PRK13479 2-aminoethylphosphona 54.1 10 0.00022 28.9 2.1 27 26-52 183-209 (368)
59 TIGR03392 FeS_syn_CsdA cystein 53.1 11 0.00023 29.2 2.1 26 26-52 209-234 (398)
60 PRK12566 glycine dehydrogenase 51.4 9.3 0.0002 34.3 1.7 29 23-51 691-719 (954)
61 TIGR01437 selA_rel uncharacter 50.7 13 0.00028 28.9 2.2 23 27-50 200-222 (363)
62 PRK10874 cysteine sulfinate de 49.5 14 0.00031 28.6 2.3 25 27-52 213-237 (401)
63 TIGR02618 tyr_phenol_ly tyrosi 47.3 21 0.00046 29.4 3.1 34 24-58 241-274 (450)
64 cd00611 PSAT_like Phosphoserin 43.0 12 0.00026 28.8 1.0 23 30-53 186-209 (355)
65 PRK05367 glycine dehydrogenase 41.8 19 0.00042 32.3 2.1 29 23-52 254-287 (954)
66 cd00615 Orn_deC_like Ornithine 41.5 5.1 0.00011 30.0 -1.2 27 26-52 210-236 (294)
67 TIGR02617 tnaA_trp_ase tryptop 40.5 32 0.00069 28.6 3.1 27 25-52 255-281 (467)
68 PRK05355 3-phosphoserine/phosp 39.5 17 0.00037 28.3 1.4 29 24-53 184-212 (360)
69 TIGR01976 am_tr_V_VC1184 cyste 38.8 22 0.00047 27.3 1.8 25 26-52 208-232 (397)
70 TIGR01364 serC_1 phosphoserine 37.5 18 0.00039 28.1 1.2 29 24-53 173-201 (349)
71 PRK13580 serine hydroxymethylt 37.1 58 0.0013 27.2 4.1 28 24-52 274-301 (493)
72 PF00464 SHMT: Serine hydroxym 33.9 42 0.00092 27.2 2.8 26 24-50 220-245 (399)
73 TIGR01366 serC_3 phosphoserine 33.5 24 0.00051 27.5 1.3 30 23-52 172-201 (361)
74 PRK13034 serine hydroxymethylt 32.3 49 0.0011 26.3 2.9 30 23-53 218-247 (416)
75 PLN02414 glycine dehydrogenase 31.6 37 0.0008 30.8 2.3 26 26-52 285-315 (993)
76 PF10569 Thiol-ester_cl: Alpha 28.6 32 0.00069 17.9 0.9 11 35-45 3-13 (31)
77 PF01212 Beta_elim_lyase: Beta 28.2 50 0.0011 25.3 2.2 23 25-47 184-206 (290)
78 PF01276 OKR_DC_1: Orn/Lys/Arg 25.4 65 0.0014 26.3 2.5 25 29-53 233-257 (417)
79 TIGR03588 PseC UDP-4-keto-6-de 24.7 92 0.002 24.0 3.2 29 26-55 173-203 (380)
80 COG0386 BtuE Glutathione perox 20.5 35 0.00075 24.5 0.1 29 12-40 104-134 (162)
81 PF05910 DUF868: Plant protein 20.2 76 0.0016 24.6 1.9 25 30-54 210-237 (274)
No 1
>PLN02590 probable tyrosine decarboxylase
Probab=99.94 E-value=2.9e-27 Score=193.10 Aligned_cols=90 Identities=27% Similarity=0.294 Sum_probs=80.8
Q ss_pred CCCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcC
Q psy8011 12 QAGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 91 (102)
Q Consensus 12 ~~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~ 91 (102)
-+|+++++. +|||+||||++||||||++|++||++|+|++..+.++|..+++||.......+..+|+++|+++||||||
T Consensus 332 ~~~~~r~~~-~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~r 410 (539)
T PLN02590 332 ICPEYRKFI-DGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFR 410 (539)
T ss_pred cChhhHHHh-cCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchH
Confidence 378999999 7999999999999999999999999999999999899999999996543323457899999999999999
Q ss_pred hHHHHHhhhcC
Q psy8011 92 VLKFWFMWKAK 102 (102)
Q Consensus 92 aLklW~~lr~~ 102 (102)
|||+|++||.+
T Consensus 411 aLklW~~lr~~ 421 (539)
T PLN02590 411 SLKLWMVLRLY 421 (539)
T ss_pred HHHHHHHHHHH
Confidence 99999999964
No 2
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.91 E-value=8.5e-26 Score=176.96 Aligned_cols=88 Identities=36% Similarity=0.521 Sum_probs=76.4
Q ss_pred CCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcCh
Q psy8011 13 AGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDV 92 (102)
Q Consensus 13 ~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~a 92 (102)
+|+++++. .|+|+||||++||||||++|++||++++||+..+..+++.+++||.+...+.+...+++++||+|||+++|
T Consensus 240 ~~~~~~~~-~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~a 318 (373)
T PF00282_consen 240 SPEYRHLL-FGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRA 318 (373)
T ss_dssp HCTTGGGG-TTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHH
T ss_pred cccccccc-cccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccchH
Confidence 48899988 79999999999999999999999999999999998888899999997654445678899999999999999
Q ss_pred HHHHHhhhc
Q psy8011 93 LKFWFMWKA 101 (102)
Q Consensus 93 LklW~~lr~ 101 (102)
||+|++||.
T Consensus 319 lk~w~~l~~ 327 (373)
T PF00282_consen 319 LKLWATLKS 327 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999985
No 3
>PLN02880 tyrosine decarboxylase
Probab=99.89 E-value=4.6e-24 Score=172.24 Aligned_cols=88 Identities=24% Similarity=0.370 Sum_probs=79.0
Q ss_pred CCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcCh
Q psy8011 13 AGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDV 92 (102)
Q Consensus 13 ~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~a 92 (102)
.|+|+++. +||++||||++|+||||++|++||++++|++..+..++..+++||.+......+.+|+.+|++++|||+||
T Consensus 285 ~~~~~~~l-~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~a 363 (490)
T PLN02880 285 CPEYRHYI-DGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRS 363 (490)
T ss_pred CHHHHHHh-cCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccH
Confidence 57899998 79999999999999999999999999999998888899999999987543333468899999999999999
Q ss_pred HHHHHhhhc
Q psy8011 93 LKFWFMWKA 101 (102)
Q Consensus 93 LklW~~lr~ 101 (102)
||+|++||.
T Consensus 364 lklw~~l~~ 372 (490)
T PLN02880 364 LKLWMVLRL 372 (490)
T ss_pred HHHHHHHHH
Confidence 999999986
No 4
>KOG0628|consensus
Probab=99.88 E-value=1.3e-24 Score=173.90 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=82.9
Q ss_pred CCCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcC
Q psy8011 12 QAGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 91 (102)
Q Consensus 12 ~~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~ 91 (102)
-||||+++. +|||.|||++.|||||+.+.++||.+|+||+..+..+|+.++-||.+...+ ...|+.+|+|++|||||
T Consensus 280 iCpE~r~l~-rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~--~~~Dyrhwqipl~rRfR 356 (511)
T KOG0628|consen 280 ICPEFRYLM-RGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQG--SAPDYRHWQIPLGRRFR 356 (511)
T ss_pred cCHHHHHHh-hcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhc--cCCCccccccccccchh
Confidence 599999999 799999999999999999999999999999988889999999999998764 48999999999999999
Q ss_pred hHHHHHhhhcC
Q psy8011 92 VLKFWFMWKAK 102 (102)
Q Consensus 92 aLklW~~lr~~ 102 (102)
|||+|+++|.+
T Consensus 357 SLKlWfv~R~~ 367 (511)
T KOG0628|consen 357 SLKLWFVLRSY 367 (511)
T ss_pred hHHHHHHHHHH
Confidence 99999999963
No 5
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.84 E-value=1.4e-21 Score=161.53 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cC
Q psy8011 13 AGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PD 91 (102)
Q Consensus 13 ~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~ 91 (102)
.+++++.. +||++||||++|||||+++||+||++++||+. +.+.++..++||.+... +.....+++++++||+ ++
T Consensus 361 ~~~~~~~l-~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~-~~~~~~~~a~Yl~~~~~--~~p~~~g~~~legSR~ga~ 436 (608)
T TIGR03811 361 SREVYNAY-KAISEAESVTIDPHKMGYIPYSAGGIVIQDIR-MRDVISYFATYVFEKGA--DIPALLGAYILEGSKAGAT 436 (608)
T ss_pred cHhHHHHH-hcCcCceEEEeCcccccccCCCeEEEEEeCHH-HHHHHhcCcchhccccc--cCcccccccceecCCccHH
Confidence 36778888 69999999999999999999999999999996 66788999999976432 1223578999999997 89
Q ss_pred hHHHHHhhhc
Q psy8011 92 VLKFWFMWKA 101 (102)
Q Consensus 92 aLklW~~lr~ 101 (102)
|+|+|+++|.
T Consensus 437 AlklW~~lr~ 446 (608)
T TIGR03811 437 AASVWAAHKV 446 (608)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 6
>KOG0629|consensus
Probab=99.82 E-value=2.1e-21 Score=154.75 Aligned_cols=87 Identities=60% Similarity=1.056 Sum_probs=81.9
Q ss_pred cccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcChHH
Q psy8011 15 GLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLK 94 (102)
Q Consensus 15 ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~aLk 94 (102)
..+|++ .|||+|||++|||||++++|..||++++|....|.++.+.+|.||++++..++-.+|.|+.++||+|+.+.+|
T Consensus 301 k~R~kl-~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FK 379 (510)
T KOG0629|consen 301 KHRHKL-TGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFK 379 (510)
T ss_pred hhHhhc-cCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHH
Confidence 456766 6999999999999999999999999999999999899999999999999988889999999999999999999
Q ss_pred HHHhhhcC
Q psy8011 95 FWFMWKAK 102 (102)
Q Consensus 95 lW~~lr~~ 102 (102)
+|++||.+
T Consensus 380 lWlmwkaK 387 (510)
T KOG0629|consen 380 LWLMWKAK 387 (510)
T ss_pred HHHHHHhc
Confidence 99999974
No 7
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.79 E-value=4.9e-20 Score=150.15 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcC
Q psy8011 12 QAGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 91 (102)
Q Consensus 12 ~~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~ 91 (102)
.+++++++. +|++.||||++|+||||++|++||++++|++..+ +++...+.|+.... ..|++++++|+||+++
T Consensus 310 ~~~~~r~~l-~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~-~~~~~~~~Yl~~~~-----~~d~~~~~legsR~~~ 382 (522)
T TIGR03799 310 LSNTYRHLL-KGIERADSVTIDAHKQLYVPMGAGMVLFKDPALM-SAIEHHAEYILRKG-----SKDLGSHTLEGSRPGM 382 (522)
T ss_pred hCHHHHHHh-cCchhCCEEEEChhhcCCcCcccEEEEEeCHHHH-HHhccCcchhcCCC-----CCccccceeecCcchH
Confidence 357889988 7999999999999999999999999999998754 67888899986532 3568899999999999
Q ss_pred hHHHHHhhhc
Q psy8011 92 VLKFWFMWKA 101 (102)
Q Consensus 92 aLklW~~lr~ 101 (102)
+||+|++||.
T Consensus 383 al~lw~aL~~ 392 (522)
T TIGR03799 383 AMLVYAGLHI 392 (522)
T ss_pred HHHHHHHHHH
Confidence 9999999985
No 8
>PLN02263 serine decarboxylase
Probab=99.66 E-value=6.5e-17 Score=130.71 Aligned_cols=68 Identities=25% Similarity=0.432 Sum_probs=58.5
Q ss_pred CCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCc-ChHHHHHhhh
Q psy8011 22 PRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP-DVLKFWFMWK 100 (102)
Q Consensus 22 ~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~-~aLklW~~lr 100 (102)
.+.+.||||++||||||++|++||++|+|++. + .+++.+++||... +.|+++||++ ++||+|++||
T Consensus 287 df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~-~-~~~~~~~~Yl~~~-----------d~ti~gSR~g~~al~lW~~L~ 353 (470)
T PLN02263 287 TFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH-I-NVLSSNVEYLASR-----------DATIMGSRNGHAPIFLWYTLN 353 (470)
T ss_pred CCCcCccEEEECCccccCCCcCEEEEEEehhh-H-hhhccChHhhCCC-----------CCCcCCCCCcHHHHHHHHHHH
Confidence 36777999999999999999999999999753 3 6788999999763 3589999997 6999999998
Q ss_pred cC
Q psy8011 101 AK 102 (102)
Q Consensus 101 ~~ 102 (102)
.+
T Consensus 354 ~~ 355 (470)
T PLN02263 354 RK 355 (470)
T ss_pred Hh
Confidence 64
No 9
>PLN03032 serine decarboxylase; Provisional
Probab=99.55 E-value=6.2e-15 Score=116.16 Aligned_cols=67 Identities=30% Similarity=0.478 Sum_probs=57.1
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cChHHHHHhhhc
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PDVLKFWFMWKA 101 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~aLklW~~lr~ 101 (102)
..+.+|||++|+||++++|++||++++|++. + ..+..+++|+... ++|+++||+ ++++++|++|+.
T Consensus 221 ~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~-~-~~~~~~~~Yl~~~-----------d~ti~gSR~g~~~l~~w~~l~~ 287 (374)
T PLN03032 221 FRKPIGSVSVSGHKFLGCPMPCGVALTRKKH-V-KALSQNVEYLNSR-----------DATIMGSRNGHAPLYLWYTLRR 287 (374)
T ss_pred CCcCCcEEEECcccccCCCcCeEEEEEEchh-h-HhhccCCcccCCC-----------CCcccCCCchHHHHHHHHHHHH
Confidence 3456999999999999999999999999853 3 5688899999642 479999998 799999999986
Q ss_pred C
Q psy8011 102 K 102 (102)
Q Consensus 102 ~ 102 (102)
+
T Consensus 288 ~ 288 (374)
T PLN03032 288 K 288 (374)
T ss_pred h
Confidence 3
No 10
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.54 E-value=6.6e-15 Score=118.72 Aligned_cols=72 Identities=24% Similarity=0.191 Sum_probs=63.8
Q ss_pred CCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCc-ChHHHHHhhh
Q psy8011 22 PRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP-DVLKFWFMWK 100 (102)
Q Consensus 22 ~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~-~aLklW~~lr 100 (102)
.|+++||||++|+|||+++|++||++++||+..+.......+.|+... ...++++.+||.. +++|.|++||
T Consensus 262 f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~--------~~~~~ti~~sr~~~~~~~~~~~l~ 333 (460)
T COG0076 262 FGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGG--------GIPNFTILGSRPGRQALALYANLR 333 (460)
T ss_pred cCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCC--------CcCceeEeeccchHHHHHHHHHHH
Confidence 599999999999999999999999999999988888888888888642 2457999999996 8999999998
Q ss_pred c
Q psy8011 101 A 101 (102)
Q Consensus 101 ~ 101 (102)
.
T Consensus 334 ~ 334 (460)
T COG0076 334 R 334 (460)
T ss_pred H
Confidence 5
No 11
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.47 E-value=3.6e-14 Score=113.47 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=63.0
Q ss_pred CcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCc-Ch
Q psy8011 14 GGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP-DV 92 (102)
Q Consensus 14 ~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~-~a 92 (102)
+++.... .++.|||+++|+|||++.|++||+|++|++..+...+...++|+.... .++++++||++ ++
T Consensus 241 ~~~~~~~--~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~---------~~~t~~~sR~g~~a 309 (431)
T TIGR01788 241 PDLEWDF--RLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDE---------PTFTLNFSRPANQV 309 (431)
T ss_pred CCchhhc--CCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCC---------CCcceecCchHHHH
Confidence 3444333 478999999999999999999999999998767677888889995421 24799999996 89
Q ss_pred HHHHHhhhc
Q psy8011 93 LKFWFMWKA 101 (102)
Q Consensus 93 LklW~~lr~ 101 (102)
+++|+.|+.
T Consensus 310 l~~w~~l~~ 318 (431)
T TIGR01788 310 IAQYYNFLR 318 (431)
T ss_pred HHHHHHHHH
Confidence 999999875
No 12
>PRK02769 histidine decarboxylase; Provisional
Probab=99.33 E-value=1.6e-12 Score=102.37 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=54.7
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cChHHHHHhhhc
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PDVLKFWFMWKA 101 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~aLklW~~lr~ 101 (102)
+.+.+|||++|+|||+++|++||++++|++. + ..+..+++|+.. .+++++|||+ ++++++|.+|+.
T Consensus 218 ~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~-~-~~~~~~~~yl~~-----------~d~t~~GSR~g~~~l~lw~aL~~ 284 (380)
T PRK02769 218 FADGIDSIAISGHKFIGSPMPCGIVLAKKKY-V-ERISVDVDYIGS-----------RDQTISGSRNGHTALLLWAAIRS 284 (380)
T ss_pred ccCCCCEEEECCcccCCCCCCcEEEEEehhh-h-hhcccCccccCC-----------CCCCccCCCCcHHHHHHHHHHHH
Confidence 4458999999999999999999999999753 3 456667888753 2468999997 799999999985
No 13
>KOG1383|consensus
Probab=97.57 E-value=5.2e-05 Score=61.82 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=59.4
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cChHHHHHhhhc
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PDVLKFWFMWKA 101 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~aLklW~~lr~ 101 (102)
+...+-||+.|.||-+++|-+.|.++.|++..+...+...++|+... +...||.+||+ +...--|++|-.
T Consensus 276 r~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~---------y~s~TlngSR~g~~va~~wa~~~~ 346 (491)
T KOG1383|consen 276 RVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGI---------YASPTLNGSRPGSQVAAQWAALMS 346 (491)
T ss_pred CCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCcc---------ccCcccccCCcccHHHHHHHHHHH
Confidence 67788899999999999999999999999999887777788888543 35789999999 667777887753
No 14
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=97.26 E-value=0.00056 Score=52.11 Aligned_cols=66 Identities=27% Similarity=0.340 Sum_probs=45.5
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cChHHHHHhhh
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PDVLKFWFMWK 100 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~aLklW~~lr 100 (102)
...+|++++++|||+..|.+||.++++++..+ ..+.....|+.... .+...++|. ..++.+|.+++
T Consensus 208 ~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~-~~l~~~~~~~~~~~----------~~~~~gt~~~~~~~~~~~al~ 274 (371)
T PRK13520 208 LPGVDSITIDPHKMGLAPIPAGGILFRDESYL-DALAVDTPYLTSKK----------QATLTGTRSGAGVAATYAVMK 274 (371)
T ss_pred CCCCceEEECCccccCccCCceEEEEcCHHHH-HhhcccCccccCCC----------CcceEeeccChHHHHHHHHHh
Confidence 45689999999999999999999999887544 44444445553321 234456776 45667777664
No 15
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=97.20 E-value=0.00065 Score=51.88 Aligned_cols=65 Identities=28% Similarity=0.296 Sum_probs=44.9
Q ss_pred CcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cChHHHHHhhh
Q psy8011 25 VLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PDVLKFWFMWK 100 (102)
Q Consensus 25 e~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~aLklW~~lr 100 (102)
..+|++++++|||+..|.++|.++++++..+ ..+.....|+... ..++..++|. ...+.+|..++
T Consensus 214 ~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~-~~l~~~~~~~~~~----------~~~~~~gt~~~~~~~~~~~~l~ 279 (373)
T TIGR03812 214 PGVQSITIDPHKMGLSPIPAGGILFRSKSYL-KYLSVDAPYLTVK----------KQATITGTRSGASAAATYAVIK 279 (373)
T ss_pred CCCCEEEECccccCCCcCCceEEEEeCHHHH-hhhcccCcccCCC----------CCcceEeechhHHHHHHHHHHH
Confidence 3689999999999999999999888877654 3444444555321 1334557776 45667777665
No 16
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=97.18 E-value=0.00037 Score=56.50 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=36.8
Q ss_pred CCCcccccccCCCC--cCCeeeecccccCCCCCCceeEEEeCchHHH
Q psy8011 12 QAGGLDHFHQPRQV--LADSVTWNPHKLLTAPQQCSVFLTRHQSVLT 56 (102)
Q Consensus 12 ~~~ef~~~~~~gie--~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~ 56 (102)
.++.+.++.++|++ +||++++|+||++.+|.++|+++++|+....
T Consensus 247 ~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~ 293 (444)
T TIGR03531 247 QSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQ 293 (444)
T ss_pred cChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHH
Confidence 45666777655654 6999999999999999999999999987653
No 17
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=96.85 E-value=0.00027 Score=53.37 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=26.0
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEe
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTR 50 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~r 50 (102)
+++.+||+++++|||++.|++||.++++
T Consensus 203 ~~~~~d~~~~s~~K~l~~p~g~g~~~~~ 230 (345)
T cd06450 203 GIERVDSISVDPHKYGLVPLGCSAVLVR 230 (345)
T ss_pred CccccCEEEEchhHhhCCCcchHHHHHH
Confidence 5678999999999999999999999887
No 18
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=95.90 E-value=0.013 Score=47.45 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.2
Q ss_pred CCCcCCeeeecccccCCCCCCce-----eEEEeCc
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCS-----VFLTRHQ 52 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg-----~ll~rd~ 52 (102)
|-..||+++.++||||++|++|| ++.+|+.
T Consensus 258 ~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~ 292 (481)
T PRK04366 258 GDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEE 292 (481)
T ss_pred cccCCCEEEEechhhcCCCCCCCCCCeeeeeehhh
Confidence 44468999999999999999875 7778764
No 19
>PRK05367 glycine dehydrogenase; Provisional
Probab=95.74 E-value=0.012 Score=51.99 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=25.4
Q ss_pred CCCcCCeeeecccccCCCCCCce-----eEEEeC
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCS-----VFLTRH 51 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg-----~ll~rd 51 (102)
|--.||+++.|+|||+++|+++| .+.+|+
T Consensus 690 g~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~ 723 (954)
T PRK05367 690 GDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKA 723 (954)
T ss_pred hhcCCCEEEecCcccCCCCcCCCCCceEEEeecc
Confidence 55679999999999999999966 888874
No 20
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=95.16 E-value=0.044 Score=48.43 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=46.5
Q ss_pred CCCcCCeeeecccccCCCCCCc-----eeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcCh----H
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQC-----SVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDV----L 93 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~c-----g~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~a----L 93 (102)
|-..||.+++|.||+|++|+++ |++.+|+. |...+ .........+.. +.. .+.+...++.+++ +
T Consensus 678 g~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~--L~~~l-Pg~~v~~t~d~~-gre---q~Iga~s~~~~g~a~~~l 750 (939)
T TIGR00461 678 GDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH--LIPFL-PKHDVVSMITGI-GGS---KSIGSVSAAPYGSASILP 750 (939)
T ss_pred cccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh--chhhc-CCCcccccccCC-CCc---cccccccccccCcHHHHH
Confidence 6677999999999999999998 99999964 43222 222211111100 001 1234556677777 9
Q ss_pred HHHHhhhc
Q psy8011 94 KFWFMWKA 101 (102)
Q Consensus 94 klW~~lr~ 101 (102)
+.|+.|++
T Consensus 751 ~a~~yi~~ 758 (939)
T TIGR00461 751 ISWMYIKM 758 (939)
T ss_pred HHHHHHHH
Confidence 99998875
No 21
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=94.84 E-value=0.025 Score=43.17 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=26.4
Q ss_pred CcCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 25 VLADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 25 e~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
..+|.+++++|||++.|.++|++++++..
T Consensus 188 ~~~D~~~~s~~K~l~~p~g~g~l~~~~~~ 216 (376)
T TIGR01977 188 LAIDMLAFTGHKGLLGPQGTGGLYIREGI 216 (376)
T ss_pred cCCCEEEecccccccCCCCceEEEEcCCc
Confidence 35899999999999999999999998875
No 22
>PLN02651 cysteine desulfurase
Probab=94.32 E-value=0.031 Score=43.02 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=23.6
Q ss_pred CCeeeecccccCCCCCCceeEEEeCch
Q psy8011 27 ADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 27 ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
+|.+++++||| +.|.++|++++|++.
T Consensus 191 ~D~~~~s~hK~-~gp~G~g~l~v~~~~ 216 (364)
T PLN02651 191 VDLMSISGHKI-YGPKGVGALYVRRRP 216 (364)
T ss_pred CCEEEechhhh-CCCCceEEEEEcCCC
Confidence 79999999998 789999999999853
No 23
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.051 Score=43.56 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=25.6
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|=+.+++||||+-|-++|+|++|+..
T Consensus 214 ~~Df~afsgHKwl~gP~GiGvLy~r~~~ 241 (405)
T COG0520 214 GCDFLAFSGHKWLLGPTGIGVLYVRKEL 241 (405)
T ss_pred CCCEEEEcccccccCCCceEEEEEchHH
Confidence 4899999999999999999999998754
No 24
>PLN02724 Molybdenum cofactor sulfurase
Probab=92.23 E-value=0.11 Score=44.91 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=24.9
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-+++++|||++-|.++|+|++|+.
T Consensus 252 ~~Dfl~~S~HK~~GgP~G~G~L~vr~~ 278 (805)
T PLN02724 252 PADFVVVSFYKIFGYPTGLGALLVRRD 278 (805)
T ss_pred CCCEEEEecceeccCCCCceEEEEehh
Confidence 479999999999999999999999975
No 25
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=92.14 E-value=0.11 Score=40.71 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=23.5
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|.+++++||++ .|.+||++++++..
T Consensus 194 ~~D~~~~s~~K~~-gp~G~G~l~~~~~~ 220 (402)
T TIGR02006 194 KVDLMSISGHKIY-GPKGIGALYVRRKP 220 (402)
T ss_pred CCCEEEEehhhhc-CCCceEEEEEccCC
Confidence 5899999999965 59999999999753
No 26
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=89.66 E-value=0.32 Score=32.06 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEe
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTR 50 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~r 50 (102)
...+|.++..+||++.. ..+|++++|
T Consensus 145 ~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 145 EGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred cccCCEEEEEcccccCC-CceEEEEeC
Confidence 35689999999999999 799999886
No 27
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=89.56 E-value=0.26 Score=37.89 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.8
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|.+++++|| ++.|.++|++++|+..
T Consensus 188 ~~D~~~~s~~K-~~gp~G~g~l~v~~~~ 214 (379)
T TIGR03402 188 NIDMLSLSGHK-LHGPKGVGALYIRKGT 214 (379)
T ss_pred CCCEEEEcHHH-cCCCCceEEEEECCCC
Confidence 58999999999 6789999999998653
No 28
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=89.17 E-value=0.29 Score=37.24 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.8
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|.++.++||| +.|.++|+++++++.
T Consensus 190 ~~D~~~~s~~K~-~gp~g~g~l~~~~~~ 216 (353)
T TIGR03235 190 RIDLISCSGHKI-YGPKGIGALVIRKRG 216 (353)
T ss_pred CCCEEEeehhhc-CCCCceEEEEEccCc
Confidence 589999999998 569999999999763
No 29
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=88.65 E-value=0.36 Score=37.21 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.6
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|.+++++||| +-|.++|++++|+..
T Consensus 192 ~~D~~~~s~~K~-~gp~G~g~l~vr~~~ 218 (382)
T TIGR03403 192 GVDFLSFSAHKF-HGPKGVGGLYIRKGV 218 (382)
T ss_pred CCCEEEEcchhh-CCCCceEEEEECCCC
Confidence 589999999998 569999999999864
No 30
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=86.73 E-value=0.67 Score=37.14 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=23.6
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
+..+|-++..+||||+-|.+ |++++++.
T Consensus 233 ~~~~D~l~~S~hK~l~GP~G-g~l~~~~~ 260 (452)
T PTZ00094 233 FPYADVVTTTTHKSLRGPRS-GLIFYRKK 260 (452)
T ss_pred CCCCcEEEcCCccCCCCCCc-eEEEEecc
Confidence 34699999999999999996 88888754
No 31
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=85.46 E-value=0.41 Score=37.40 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=26.3
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
++.+|=+....||||+.|.++|++++++..
T Consensus 182 v~~iD~~~~s~~K~l~~P~G~g~l~v~~~~ 211 (378)
T PRK03080 182 WSKLDVYTFSWQKVLGGEGGHGMAILSPRA 211 (378)
T ss_pred HHHCcEEEEehhhhCCCCCceEEEEECHHH
Confidence 455799999999999999999999998653
No 32
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=83.86 E-value=0.7 Score=35.00 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=24.0
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-+..++|||++.|.++|++++++.
T Consensus 176 ~~d~~~~s~~K~l~~p~g~G~l~~~~~ 202 (356)
T cd06451 176 GVDVAYTGSQKALGAPPGLGPIAFSER 202 (356)
T ss_pred CccEEEecCchhccCCCCcceeEECHH
Confidence 478899999999999999999999764
No 33
>PRK14012 cysteine desulfurase; Provisional
Probab=83.15 E-value=0.93 Score=35.37 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.8
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|.+++++||+ +.|.++|++++++..
T Consensus 196 ~~D~~~~s~~K~-~gp~g~G~l~~~~~~ 222 (404)
T PRK14012 196 KVDLMSFSAHKI-YGPKGIGALYVRRKP 222 (404)
T ss_pred CCCEEEEehhhc-cCCCceEEEEEecCC
Confidence 489999999995 468899999998753
No 34
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=82.72 E-value=0.96 Score=34.71 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.3
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|=++.++|| |+.|.++|++++|+..
T Consensus 191 ~~D~~~~s~~K-l~gp~G~g~l~v~~~~ 217 (371)
T PF00266_consen 191 GADFLVFSSHK-LGGPPGLGFLYVRPEA 217 (371)
T ss_dssp TESEEEEESTS-TTSSSTEEEEEEEHHH
T ss_pred ccceeeecccc-cCCCCchhhheehhhh
Confidence 57889999999 8889999999999854
No 35
>PLN02409 serine--glyoxylate aminotransaminase
Probab=81.69 E-value=0.99 Score=35.48 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=24.1
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-++...|||++.|.++|.++++++
T Consensus 191 ~~D~~~~s~~K~l~~P~G~G~l~~~~~ 217 (401)
T PLN02409 191 GVDVALTGSQKALSLPTGLGIVCASPK 217 (401)
T ss_pred CccEEEEcCccccCcCCCcceeEECHH
Confidence 478999999999999999999988765
No 36
>KOG1549|consensus
Probab=81.27 E-value=1 Score=36.80 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.6
Q ss_pred cCCeeeecccccCCCCCCceeEEEeC
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRH 51 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd 51 (102)
.||=.+++.|||++.|- ||+|++|.
T Consensus 233 n~D~~s~s~HK~ygp~~-iGaLYvr~ 257 (428)
T KOG1549|consen 233 NADFLSISAHKIYGPPG-IGALYVRR 257 (428)
T ss_pred CchheeeecccccCCCc-ceEEEEcc
Confidence 37889999999999988 99999996
No 37
>PLN02271 serine hydroxymethyltransferase
Probab=80.36 E-value=1.7 Score=36.89 Aligned_cols=28 Identities=29% Similarity=0.352 Sum_probs=25.0
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
+..||-++...||||.-|.+ |++++|+.
T Consensus 349 ~~~aDvvt~TTHKtLrGPrG-G~I~~r~~ 376 (586)
T PLN02271 349 FDYCDIVTSTTHKSLRGPRG-GIIFYRKG 376 (586)
T ss_pred CcCCcEEEeCCcccCCCCCc-eEEEeccc
Confidence 56799999999999999999 88888764
No 38
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=79.41 E-value=1.6 Score=33.21 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=21.5
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|.+++++||++.. .++|++++++.
T Consensus 191 ~~d~~~~s~~K~~~~-~g~g~~~~~~~ 216 (373)
T cd06453 191 GCDFLAFSGHKMLGP-TGIGVLYGKEE 216 (373)
T ss_pred CCCEEEeccccccCC-CCcEEEEEchH
Confidence 479999999999887 77888777653
No 39
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=79.14 E-value=1.6 Score=33.69 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=21.7
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|.++.++||++ -|.++|++++++.
T Consensus 211 ~~d~~~~s~~K~~-gp~G~g~l~~~~~ 236 (403)
T TIGR01979 211 DCDFYVFSGHKMY-GPTGIGVLYGKEE 236 (403)
T ss_pred CCCEEEEeccccc-CCCCceEEEEchH
Confidence 4899999999976 4889999888753
No 40
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=77.68 E-value=1.7 Score=33.42 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=20.7
Q ss_pred CCCcCCeeeecccccCCCCCCce-----eEEEeC
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCS-----VFLTRH 51 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg-----~ll~rd 51 (102)
|...+|.++.++|||+ .|++|| ++++++
T Consensus 208 ~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~ 240 (398)
T cd00613 208 GEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKK 240 (398)
T ss_pred HHcCCCEEEeeccccC-CCCCCCCCceeEEEEhh
Confidence 3345899999999999 997644 555543
No 41
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=76.54 E-value=2.6 Score=32.93 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=21.0
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|=++..+||||+.|.+ +.++++.+.
T Consensus 223 gvD~~~~s~hK~l~g~pG-~~l~v~~~~ 249 (406)
T TIGR01814 223 GVDFACWCTYKYLNAGPG-AGAFVHEKH 249 (406)
T ss_pred CCCEEEEcCccccCCCCC-eEEEEehhh
Confidence 479999999999987777 666665543
No 42
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=74.64 E-value=2.8 Score=34.27 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
++.+|-++...||||.-|.+ |++++++.
T Consensus 234 ~~~~Div~~t~hK~L~GP~G-g~I~~~~~ 261 (475)
T PLN03226 234 FEYCDVVTTTTHKSLRGPRG-GMIFFRKG 261 (475)
T ss_pred CCCCeEEEecCcccccCCCc-eEEEEchh
Confidence 34799999999999999998 77788653
No 43
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=70.99 E-value=3.1 Score=31.73 Aligned_cols=27 Identities=11% Similarity=0.141 Sum_probs=24.1
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-+...+|||++.|.+.|.+++++.
T Consensus 181 ~~D~~~~s~~K~l~~p~G~G~l~~~~~ 207 (363)
T TIGR02326 181 HIDYLISSANKCIQGVPGFGFVIARQA 207 (363)
T ss_pred CccEEEecCccccccCCcceEEEECHH
Confidence 378999999999999999999998765
No 44
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=68.04 E-value=4.2 Score=31.66 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=21.5
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-++.++|| ++-|.++|++++++.
T Consensus 216 ~~D~~~~s~~K-~~gp~G~G~l~~~~~ 241 (406)
T PRK09295 216 DCDFYVFSGHK-LYGPTGIGILYVKEA 241 (406)
T ss_pred CCCEEEeehhh-ccCCCCcEEEEEchH
Confidence 47999999999 556889999888754
No 45
>PRK02948 cysteine desulfurase; Provisional
Probab=65.76 E-value=4.6 Score=30.98 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.2
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|.++.++||++. |.++|++++++.
T Consensus 190 ~~d~~~~s~~K~~g-p~G~G~l~~~~~ 215 (381)
T PRK02948 190 GIDSLSVSAHKIYG-PKGVGAVYINPQ 215 (381)
T ss_pred CCCEEEecHHhcCC-CCcEEEEEEcCC
Confidence 48999999999754 889999998765
No 46
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=64.70 E-value=5.4 Score=31.05 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.1
Q ss_pred cCCeeeecccccCCCCCCceeEEEeC
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRH 51 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd 51 (102)
.+|-++..+||++..|.+.|++.+++
T Consensus 210 g~D~~~~s~~K~l~~~~~~G~l~~~~ 235 (387)
T PRK09331 210 GADFIVGSGHKSMAASAPSGVLATTE 235 (387)
T ss_pred CCCEEEeeCcccccCCCCEEEEEECH
Confidence 37999999999999999999888865
No 47
>PLN02721 threonine aldolase
Probab=60.87 E-value=8.4 Score=28.87 Aligned_cols=29 Identities=31% Similarity=0.209 Sum_probs=21.0
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCchH
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQSV 54 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~~~ 54 (102)
.+.+|++++..||++..|. |.+++.++..
T Consensus 196 ~~~~d~~~~s~sK~l~~~~--G~~~~~~~~~ 224 (353)
T PLN02721 196 VKAADSVSVCLSKGLGAPV--GSVIVGSKSF 224 (353)
T ss_pred hhhCCEEEEecccccCCce--eeEEecCHHH
Confidence 4578999999999999774 4445555543
No 48
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=59.36 E-value=8.5 Score=31.43 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.0
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.||=++..+|||++-|. +|+++.++.
T Consensus 278 GaDiv~fSg~K~LgGp~-~G~i~g~~~ 303 (454)
T TIGR00474 278 GVDLVTFSGDKLLGGPQ-AGIIVGKKE 303 (454)
T ss_pred CCCEEEecCccccCCCe-EEEEEECHH
Confidence 48999999999999995 788888753
No 49
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=59.16 E-value=9.5 Score=31.01 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=24.8
Q ss_pred CcCCeeeecccccCCCCCCceeEEEeCchHH
Q psy8011 25 VLADSVTWNPHKLLTAPQQCSVFLTRHQSVL 55 (102)
Q Consensus 25 e~ADSis~D~HK~L~~P~~cg~ll~rd~~~l 55 (102)
..+|++++.+||.+++|.+ |++.+++....
T Consensus 249 s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~ 278 (460)
T PRK13238 249 SYADGLTMSAKKDAMVNIG-GLLCFRDEDLF 278 (460)
T ss_pred ccCcEEEEecccCCCCcce-eEEEcChHHHH
Confidence 4699999999999999996 88888875433
No 50
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=58.99 E-value=7.9 Score=31.33 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=23.7
Q ss_pred CCeeeecccccCCCCCCceeEEEeCchHH
Q psy8011 27 ADSVTWNPHKLLTAPQQCSVFLTRHQSVL 55 (102)
Q Consensus 27 ADSis~D~HK~L~~P~~cg~ll~rd~~~l 55 (102)
+|.+++..||.. -|-++|+|++|+.-.+
T Consensus 194 vD~ls~SaHK~~-GpkGiGaLyv~~~~~~ 221 (386)
T COG1104 194 VDLLSFSAHKFG-GPKGIGALYVRPGVRL 221 (386)
T ss_pred cceEEeehhhcc-CCCceEEEEECCCCcc
Confidence 999999999975 5999999999765443
No 51
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=57.48 E-value=13 Score=27.71 Aligned_cols=28 Identities=21% Similarity=0.149 Sum_probs=21.0
Q ss_pred CcCCeeeecccccCCCCCCceeEEEeCchH
Q psy8011 25 VLADSVTWNPHKLLTAPQQCSVFLTRHQSV 54 (102)
Q Consensus 25 e~ADSis~D~HK~L~~P~~cg~ll~rd~~~ 54 (102)
..+|.++.++||++..|- |.+++.++..
T Consensus 185 ~~~d~~~~s~sK~~~~~~--g~~~~~~~~~ 212 (338)
T cd06502 185 SGVDSVSFCLSKGGGAPV--GAVVVGNRDF 212 (338)
T ss_pred hcCCEEEEeccccCCCcc--ceEEECCHHH
Confidence 468999999999999886 4455555543
No 52
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=57.24 E-value=14 Score=30.57 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=27.1
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCchHHHH
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTE 57 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~ 57 (102)
...+|.+++++||-+.+|. -|++.++|......
T Consensus 248 ~s~aD~~t~S~~K~~~~~~-GG~i~t~D~eL~~~ 280 (460)
T PRK13237 248 FSYADGCTMSGKKDCLVNI-GGFLAMNDEELFDE 280 (460)
T ss_pred cCcCcEEEEeCCCCCCCCC-ceEEEECCHHHHHH
Confidence 4689999999999999988 67778888765543
No 53
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=56.74 E-value=8.3 Score=28.79 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.2
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|.+...+|||++.|.++|.+++++.
T Consensus 177 ~~d~~~~s~~K~l~~~~G~g~~~~~~~ 203 (355)
T TIGR03301 177 DVDALIASANKCLEGVPGFGFVIARRD 203 (355)
T ss_pred CccEEEecCCcccccCCceeEEEECHH
Confidence 478899999999998888999888754
No 54
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=54.89 E-value=10 Score=28.95 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.0
Q ss_pred CCeeeecccccCCCCCCceeEEEeC
Q psy8011 27 ADSVTWNPHKLLTAPQQCSVFLTRH 51 (102)
Q Consensus 27 ADSis~D~HK~L~~P~~cg~ll~rd 51 (102)
+|-++.++||++..|..+|.+++++
T Consensus 192 ~d~~~~s~~K~l~~~~~~G~l~~~~ 216 (361)
T cd06452 192 ADFIVGSGHKSMAASAPIGVLATTE 216 (361)
T ss_pred CCEEEecCCccccCCCCeEEEEECH
Confidence 7899999999999999999887764
No 55
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=54.42 E-value=11 Score=29.48 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCeeeecccccCCCCCCceeEEEeCc
Q psy8011 27 ADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 27 ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
+|-++.++||+ +-|-++|++++++.
T Consensus 226 ~d~~~~s~~K~-~gp~G~G~l~~~~~ 250 (424)
T PLN02855 226 ADFLVASSHKM-CGPTGIGFLWGKSD 250 (424)
T ss_pred CCEEEeecccc-cCCCccEEEEEchh
Confidence 69999999995 56889999998754
No 56
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=54.41 E-value=11 Score=34.06 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=25.1
Q ss_pred CCCcCCeeeecccccCCCCCC-----ceeEEEeC
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQ-----CSVFLTRH 51 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~-----cg~ll~rd 51 (102)
|--.||-++.+.||+++.|.+ +|.+.+|.
T Consensus 716 ~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~ 749 (993)
T PLN02414 716 GFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK 749 (993)
T ss_pred cccCCCEEEecCCccCCcCcccCCCCeeeEEEch
Confidence 344689999999999999997 99998877
No 57
>PRK04311 selenocysteine synthase; Provisional
Probab=54.36 E-value=9.4 Score=31.26 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.1
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.||-++..+|||++-|. +|+++.|+.
T Consensus 283 GaDiv~fSg~K~LgGp~-~G~i~g~~~ 308 (464)
T PRK04311 283 GVDLVTFSGDKLLGGPQ-AGIIVGKKE 308 (464)
T ss_pred CCcEEEecCcccccCCc-eEEEEEcHH
Confidence 58999999999999995 888888653
No 58
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=54.05 E-value=10 Score=28.92 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=23.7
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-+....|||++.|.++|.++++..
T Consensus 183 ~~d~~v~s~~K~l~g~~G~G~l~~~~~ 209 (368)
T PRK13479 183 GIDALISSANKCIEGVPGFGFVIARRS 209 (368)
T ss_pred CceEEEecCccccccCCCceEEEECHH
Confidence 478889999999999999999999754
No 59
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=53.09 E-value=11 Score=29.20 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=20.4
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-++.++||+ +.|.++|.+++++.
T Consensus 209 ~~d~~~~s~~K~-~gp~G~G~l~~~~~ 234 (398)
T TIGR03392 209 DIDFYAFSGHKL-YGPTGIGVLYGKTE 234 (398)
T ss_pred CCCEEEEecccc-cCCCceEEEEEcHH
Confidence 378899999995 56889998877643
No 60
>PRK12566 glycine dehydrogenase; Provisional
Probab=51.39 E-value=9.3 Score=34.34 Aligned_cols=29 Identities=21% Similarity=0.059 Sum_probs=25.2
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEeC
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTRH 51 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~rd 51 (102)
|=-.||=+..++|||+..|.+.|...+.-
T Consensus 691 g~~GADi~~~s~HKtf~~P~G~GGP~vG~ 719 (954)
T PRK12566 691 ADIGADVSHMNLHKTFCIPHGGGGPGMGP 719 (954)
T ss_pred hhcCCCEEEecCCcccCcCccCCCCccch
Confidence 44468999999999999999999988865
No 61
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=50.75 E-value=13 Score=28.92 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.3
Q ss_pred CCeeeecccccCCCCCCceeEEEe
Q psy8011 27 ADSVTWNPHKLLTAPQQCSVFLTR 50 (102)
Q Consensus 27 ADSis~D~HK~L~~P~~cg~ll~r 50 (102)
+|-++..+||+|..|- .|+++.+
T Consensus 200 ~D~~~~S~~K~l~gp~-~G~l~~~ 222 (363)
T TIGR01437 200 ADLVIYSGAKAIEGPT-SGLVLGK 222 (363)
T ss_pred CCEEEEeCCcccCCCc-eEEEEEc
Confidence 7999999999999887 7776554
No 62
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=49.47 E-value=14 Score=28.57 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=20.3
Q ss_pred CCeeeecccccCCCCCCceeEEEeCc
Q psy8011 27 ADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 27 ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
+|-++.++||+ +-|.++|++++++.
T Consensus 213 ~d~~~~s~~K~-~gp~G~G~l~~~~~ 237 (401)
T PRK10874 213 IDFYAFSGHKL-YGPTGIGVLYGKSE 237 (401)
T ss_pred CCEEEEecccc-cCCCccEEEEEchH
Confidence 78999999995 56889998887643
No 63
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=47.33 E-value=21 Score=29.42 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=26.3
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCchHHHHH
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTEC 58 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~ 58 (102)
.+.||+++...||-..+|. -|++.++|......+
T Consensus 241 ~~~aD~~~~S~~Kd~~~~~-GG~l~~~d~~l~~k~ 274 (450)
T TIGR02618 241 MSYADGCTMSGKKDCLVNI-GGFLCMNDDEMFQSA 274 (450)
T ss_pred hccCcEEEEeeccCCCCCC-ceEEEeCCHHHHHHH
Confidence 4679999999999999999 455556887655443
No 64
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=42.95 E-value=12 Score=28.83 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=18.1
Q ss_pred eeec-ccccCCCCCCceeEEEeCch
Q psy8011 30 VTWN-PHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 30 is~D-~HK~L~~P~~cg~ll~rd~~ 53 (102)
+.+- .||+++ |.+.|++++|++.
T Consensus 186 ~~~ss~~K~lG-P~G~g~l~~~~~~ 209 (355)
T cd00611 186 VIYAGAQKNLG-PAGVTVVIVRKDL 209 (355)
T ss_pred EEEeecccccC-CCceEEEEECHHH
Confidence 3444 999876 9999999998754
No 65
>PRK05367 glycine dehydrogenase; Provisional
Probab=41.77 E-value=19 Score=32.26 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=24.7
Q ss_pred CCCcCCeeeecccccCCCCCC-----ceeEEEeCc
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQ-----CSVFLTRHQ 52 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~-----cg~ll~rd~ 52 (102)
|=-.||=+.-+.|||+ +|.+ +|.+.+|+.
T Consensus 254 ge~GaDi~vgs~qkfg-~P~g~GGP~aGflavr~~ 287 (954)
T PRK05367 254 GEMGADIAVGSAQRFG-VPMGFGGPHAAYFAVRDA 287 (954)
T ss_pred hhcCCCEEEeeCcccC-CCCCCCCCCEEEEEECHH
Confidence 3446899999999998 8888 999999975
No 66
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=41.51 E-value=5.1 Score=29.98 Aligned_cols=27 Identities=33% Similarity=0.255 Sum_probs=23.6
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-++.++||++..|-.++++.+++.
T Consensus 210 ~~div~~S~hK~l~g~~~~~~l~~~~~ 236 (294)
T cd00615 210 GADIVVQSTHKTLPALTQGSMIHVKGD 236 (294)
T ss_pred CCcEEEEchhcccchHhHHHHHHhCCC
Confidence 689999999999988888888888765
No 67
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=40.53 E-value=32 Score=28.65 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=22.9
Q ss_pred CcCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 25 VLADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 25 e~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
+.|||++++.-|-+++|.++-++ .++.
T Consensus 255 ~~aDsvt~slsKglgApvGg~La-g~d~ 281 (467)
T TIGR02617 255 KYADMLAMSAKKDAMVPMGGLLC-FKDD 281 (467)
T ss_pred ccCCEEEEEcCCCCCCcccceEE-ecch
Confidence 78999999999999999987554 5555
No 68
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=39.48 E-value=17 Score=28.33 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=23.8
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
++..|=+....||+++ |-+.|+++++++.
T Consensus 184 v~~~d~~~~ssqK~lg-P~Glg~l~~s~~~ 212 (360)
T PRK05355 184 VSKFGLIYAGAQKNIG-PAGLTIVIVREDL 212 (360)
T ss_pred HHHccEEEEecccccc-CCceEEEEECHHH
Confidence 4455788899999987 9999999998864
No 69
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=38.81 E-value=22 Score=27.29 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=19.6
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-++..+|||++.+ +|.+++++.
T Consensus 208 ~~d~~~~s~~K~~g~~--~G~l~~~~~ 232 (397)
T TIGR01976 208 GADFLTCSAYKFFGPH--MGILWGRPE 232 (397)
T ss_pred CCCEEEEechhhcCCc--eEEEEEcHH
Confidence 4789999999998643 788887654
No 70
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=37.48 E-value=18 Score=28.14 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=23.7
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
++..|=+....||+++ |-+.|+++++++.
T Consensus 173 ~~~~d~~~~ssqK~lg-P~Glg~l~~s~~~ 201 (349)
T TIGR01364 173 VSKFGLIYAGAQKNIG-PAGLTVVIVRKDL 201 (349)
T ss_pred HHHccEEEEecccccC-CCceEEEEECHHH
Confidence 4455778889999987 9999999998764
No 71
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=37.13 E-value=58 Score=27.20 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=22.8
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
+..+|=++...||+|+-|.+ |++++++.
T Consensus 274 ~~~~D~vtgT~hKaL~GP~G-G~I~~~~~ 301 (493)
T PRK13580 274 VPHADIVTTTTHKTLRGPRG-GLVLAKKE 301 (493)
T ss_pred CCCCcEEEeCChhhccCCCe-EEEEecHH
Confidence 45799999999999988885 77777643
No 72
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=33.89 E-value=42 Score=27.16 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=21.7
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEe
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTR 50 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~r 50 (102)
++.||-++...||.|.=|-+ |+++++
T Consensus 220 ~~~ADvvt~sThKtl~GPrg-giI~~~ 245 (399)
T PF00464_consen 220 FPYADVVTGSTHKTLRGPRG-GIILTN 245 (399)
T ss_dssp CCTSSEEEEESSGGG-SSS--EEEEES
T ss_pred cccceEEEeeccccccccCc-eEEEEc
Confidence 57899999999999999986 888888
No 73
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=33.47 E-value=24 Score=27.47 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=22.7
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.++.+|=++..+||+++.|-+.++++++++
T Consensus 172 dv~~~D~~~~s~~K~lg~~~Gl~~~~~s~~ 201 (361)
T TIGR01366 172 DIAETDVYYFAPQKNFASDGGLWLAIMSPA 201 (361)
T ss_pred CHHHCCEEEEEchhhcCCCCceEEEEECHH
Confidence 355589999999999998866555556664
No 74
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=32.32 E-value=49 Score=26.27 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=22.6
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+..+|-++...||++..|.+ |+++..+..
T Consensus 218 ~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~ 247 (416)
T PRK13034 218 PFPHAHVVTTTTHKTLRGPRG-GMILTNDEE 247 (416)
T ss_pred CCCCceEEEEeCcccCCCCCC-eEEEECcHH
Confidence 346799999999999988885 555565543
No 75
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=31.62 E-value=37 Score=30.76 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.3
Q ss_pred cCCeeeecccccCCCCCC-----ceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQ-----CSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~-----cg~ll~rd~ 52 (102)
.||=++-+.|||+ +|.+ +|++.+|+.
T Consensus 285 GADi~vgsgqKwg-~P~G~GGP~aGflavr~~ 315 (993)
T PLN02414 285 GADIVVGSAQRFG-VPMGYGGPHAAFLATSQE 315 (993)
T ss_pred cCcEEEECCCccc-cCCCCCCCCeeEEEECHH
Confidence 6788999999998 7777 799999875
No 76
>PF10569 Thiol-ester_cl: Alpha-macro-globulin thiol-ester bond-forming region; InterPro: IPR019565 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ]. This short highly conserved region of proteinase-binding alpha-macro-globulins contains the cysteine and a glutamine of a thiol-ester bond that is cleaved at the moment of proteinase binding, and mediates the covalent binding of the alpha-macro-globulin to the proteinase. The GCGEQ motif is highly conserved. ; PDB: 2B39_B 2PN5_A 4ACQ_C 1HZF_A 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=28.59 E-value=32 Score=17.88 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=6.7
Q ss_pred cccCCCCCCce
Q psy8011 35 HKLLTAPQQCS 45 (102)
Q Consensus 35 HK~L~~P~~cg 45 (102)
..++..|++||
T Consensus 3 ~~Li~~P~GCg 13 (31)
T PF10569_consen 3 DSLIRYPYGCG 13 (31)
T ss_dssp GGGSSS--SST
T ss_pred HHHHhcCCCcH
Confidence 45778899987
No 77
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=28.15 E-value=50 Score=25.26 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=18.3
Q ss_pred CcCCeeeecccccCCCCCCceeE
Q psy8011 25 VLADSVTWNPHKLLTAPQQCSVF 47 (102)
Q Consensus 25 e~ADSis~D~HK~L~~P~~cg~l 47 (102)
+.+|++++.+.|-+..|.+.-++
T Consensus 184 ~~~D~v~~~~tK~~g~~~Gavl~ 206 (290)
T PF01212_consen 184 AGADSVSFGGTKNGGAPGGAVLA 206 (290)
T ss_dssp TTSSEEEEETTSTT-SSSEEEEE
T ss_pred hhCCEEEEEEEcccccccceEEE
Confidence 67999999999999998765443
No 78
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=25.41 E-value=65 Score=26.29 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=21.4
Q ss_pred eeeecccccCCCCCCceeEEEeCch
Q psy8011 29 SVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 29 Sis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
=++...||+|..--.+|++.+++..
T Consensus 233 ~vvqS~HKtL~altQts~lh~~~~~ 257 (417)
T PF01276_consen 233 IVVQSTHKTLPALTQTSMLHVKGDR 257 (417)
T ss_dssp EEEEEHHHHSSS-TT-EEEEEETCC
T ss_pred eeeechhhcccccccceEEEecCCC
Confidence 8999999999999999999999774
No 79
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=24.71 E-value=92 Score=23.96 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=21.5
Q ss_pred cCCeeeeccc--ccCCCCCCceeEEEeCchHH
Q psy8011 26 LADSVTWNPH--KLLTAPQQCSVFLTRHQSVL 55 (102)
Q Consensus 26 ~ADSis~D~H--K~L~~P~~cg~ll~rd~~~l 55 (102)
.+|-.++.+| |++..+ ..|+++++++...
T Consensus 173 ~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~ 203 (380)
T TIGR03588 173 YADATVFSFHPVKIITTA-EGGAVTTNDEELA 203 (380)
T ss_pred ccceEEEecCCCCccccc-CceEEEECCHHHH
Confidence 5689999988 888776 5667777776543
No 80
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.45 E-value=35 Score=24.53 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=23.0
Q ss_pred CCCcccccccC--CCCcCCeeeecccccCCC
Q psy8011 12 QAGGLDHFHQP--RQVLADSVTWNPHKLLTA 40 (102)
Q Consensus 12 ~~~ef~~~~~~--gie~ADSis~D~HK~L~~ 40 (102)
+.|=|++|.+. |.-....|-||++|.|.=
T Consensus 104 a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvd 134 (162)
T COG0386 104 AHPLYKYLKEQKPGKLGGKDIKWNFTKFLVD 134 (162)
T ss_pred CCcHHHHHHhcCCCCccCCccceeeEEEEEc
Confidence 56788998864 666789999999997643
No 81
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=20.20 E-value=76 Score=24.63 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=19.9
Q ss_pred eeecccccCCC--CC-CceeEEEeCchH
Q psy8011 30 VTWNPHKLLTA--PQ-QCSVFLTRHQSV 54 (102)
Q Consensus 30 is~D~HK~L~~--P~-~cg~ll~rd~~~ 54 (102)
|.||-|=||+- |- +|+++++|-...
T Consensus 210 V~WDVHdWlF~~~~~~~~AVFmFr~~~~ 237 (274)
T PF05910_consen 210 VFWDVHDWLFNNGPGSGHAVFMFRPRSG 237 (274)
T ss_pred EEEEhhhhhhccCCCCCceEEEEEecCC
Confidence 78999999998 43 388999987643
Done!