RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8011
         (102 letters)



>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
           LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
          Length = 504

 Score =  117 bits (294), Expect = 1e-32
 Identities = 43/77 (55%), Positives = 52/77 (67%)

Query: 26  LADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 85
            A+SVTWNPHK++    QCS  L + + +L  C+   A YLFQ DK YD  YD+GDK IQ
Sbjct: 303 RANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQ 362

Query: 86  CGRKPDVLKFWFMWKAK 102
           CGR  D+ KFW MWKAK
Sbjct: 363 CGRHVDIFKFWLMWKAK 379


>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
           alternative splicing, pyridoxal phosphate (PLP),
           structural genomics consortium (SGC); HET: PLP; 1.6A
           {Homo sapiens}
          Length = 515

 Score =  112 bits (281), Expect = 1e-30
 Identities = 47/78 (60%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 26  LADSVTWNPHKLLTAPQQCSVFLTRHQS-VLTECHSASASYLFQKDKFYDTKYDSGDKHI 84
            ADSV WNPHKLL A  QCS  L +  S +L  CH + ASYLFQ+DKFYD   D+GDK +
Sbjct: 317 RADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVV 376

Query: 85  QCGRKPDVLKFWFMWKAK 102
           QCGR+ D LK W MWKA+
Sbjct: 377 QCGRRVDCLKLWLMWKAQ 394


>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
           decarboxylase; structural genomics, APC91511.1,
           glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
           parahaemolyticus}
          Length = 497

 Score =  100 bits (252), Expect = 1e-26
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 26  LADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 85
            A S++ + HKL      C   L   +S   +     A YL   ++ +D   +  DK I 
Sbjct: 315 RAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYL---NREHDELPNLVDKSIA 370

Query: 86  CGRKPDVLKFWFMWKAK 102
             ++ D LK +   +  
Sbjct: 371 TTKRFDALKVFMTMQNV 387


>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
           HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
           1js6_A* 3rch_A* 3rbl_A 3rbf_A*
          Length = 486

 Score = 99.8 bits (249), Expect = 2e-26
 Identities = 21/76 (27%), Positives = 31/76 (40%)

Query: 26  LADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 85
            ADS  +NPHK L     CS    + ++ LT        YL    +      D     + 
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLP 352

Query: 86  CGRKPDVLKFWFMWKA 101
            GR+   LK WF+++ 
Sbjct: 353 LGRRFRSLKMWFVFRM 368


>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
           sapiens}
          Length = 481

 Score = 97.1 bits (242), Expect = 2e-25
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 26  LADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 85
            ADS T+NP K +     C+ F  + +  L +  S +  YL   +    T +      I 
Sbjct: 299 YADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDF--MHWQIP 356

Query: 86  CGRKPDVLKFWFMWKAK 102
             R+   +K WF+ ++ 
Sbjct: 357 LSRRFRSVKLWFVIRSF 373


>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
           beta protein, alternative splicing, catecholamine
           biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
           melanogaster}
          Length = 475

 Score = 95.6 bits (238), Expect = 7e-25
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 26  LADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 85
            ADS  +NPHK +     CS    +  S +    +    YL  K     +  D     I 
Sbjct: 292 SADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL--KHDMQGSAPDYRHWQIP 349

Query: 86  CGRKPDVLKFWFMWKA 101
            GR+   LK WF+ + 
Sbjct: 350 LGRRFRALKLWFVLRL 365


>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
           biosynthesis, seven-stranded BETE-strand, PYR
           5'-phosphate; HET: PLP; 2.50A {Methanococcus
           maripaludis} SCOP: c.67.1.9
          Length = 456

 Score = 39.3 bits (91), Expect = 6e-05
 Identities = 7/45 (15%), Positives = 15/45 (33%)

Query: 16  LDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHS 60
           L+   +  +   D+V  +  K L  P    +  +     + E   
Sbjct: 278 LEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL 322


>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
           pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
           thaliana}
          Length = 502

 Score = 33.5 bits (76), Expect = 0.007
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 18  HFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYL 66
            F  P      S+  + HK           + R++  L E      +YL
Sbjct: 262 DFRLPL---VKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYL 307


>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
           {Staphylococcus aureus}
          Length = 446

 Score = 31.7 bits (72), Expect = 0.029
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 8/49 (16%)

Query: 27  ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTEC--------HSASASYLF 67
           AD V  + HK L A    SV      +   E          ++S SYL 
Sbjct: 202 ADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLI 250


>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino
           acid biosynthesis, DHQS, O form J, domain movement,
           cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans}
           SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A*
           1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
          Length = 393

 Score = 28.9 bits (65), Expect = 0.23
 Identities = 3/15 (20%), Positives = 5/15 (33%)

Query: 19  FHQPRQVLADSVTWN 33
             QP ++  D     
Sbjct: 167 IWQPTKIYIDLEFLE 181


>3okf_A 3-dehydroquinate synthase; structural genomics, center for
           structural genomics of infec diseases, csgid, NAD,
           lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
          Length = 390

 Score = 28.4 bits (64), Expect = 0.35
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 19  FHQPRQVLADSVTWN 33
           F+QP+ V+ D+    
Sbjct: 185 FYQPKAVVIDTDCLT 199


>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
           decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
           2.11A {Methanocaldococcus jannaschii}
          Length = 397

 Score = 28.5 bits (64), Expect = 0.36
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 27  ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYL 66
            DS+T +PHK+   P      L +            A YL
Sbjct: 237 VDSITIDPHKMGHCPIPSGGILFKDIG-YKRYLDVDAPYL 275


>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
           2-deoxystreptamine, dehydroquinate synthase, lyase; HET:
           NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
          Length = 368

 Score = 28.4 bits (64), Expect = 0.38
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 19  FHQPRQVLADSVTWN 33
           ++ PR V AD+   +
Sbjct: 156 YYPPRFVFADTRILS 170


>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
           dependent decarboxylase, acid stress stringent response;
           HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
          Length = 715

 Score = 28.5 bits (63), Expect = 0.38
 Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 7/48 (14%)

Query: 27  ADSVTWNPHKLLTAPQQCSVFLTRH-------QSVLTECHSASASYLF 67
               T + HKLL A  Q S+   +                + S  Y  
Sbjct: 358 VIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGI 405


>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
           PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
           {Escherichia coli}
          Length = 755

 Score = 27.8 bits (61), Expect = 0.61
 Identities = 12/70 (17%), Positives = 15/70 (21%), Gaps = 12/70 (17%)

Query: 8   LPVSQAGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQS----------VLTE 57
                A   +             T + HKLL A  Q S    R                 
Sbjct: 360 YADHYAMRGEPG--DHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMM 417

Query: 58  CHSASASYLF 67
             + S  Y  
Sbjct: 418 HATTSPLYAI 427


>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte
           tuberculosis, nicotinamide adenine dinucleotide
           (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis}
           PDB: 3qbd_A
          Length = 368

 Score = 27.6 bits (62), Expect = 0.70
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 19  FHQPRQVLAD 28
           FHQP  VL D
Sbjct: 165 FHQPLAVLVD 174


>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics
           initiative, RSGI, structural genomics,; 1.80A {Thermus
           thermophilus} SCOP: e.22.1.1
          Length = 348

 Score = 27.2 bits (61), Expect = 0.78
 Identities = 5/10 (50%), Positives = 7/10 (70%)

Query: 19  FHQPRQVLAD 28
           FH P+ V A+
Sbjct: 146 FHFPQGVYAE 155


>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic
           amino acid biosynthesis, open form, form B, domain
           movement, cyclase; HET: NAD; 2.20A {Staphylococcus
           aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
          Length = 354

 Score = 26.8 bits (60), Expect = 1.1
 Identities = 4/13 (30%), Positives = 7/13 (53%)

Query: 19  FHQPRQVLADSVT 31
           F++P  V+ D   
Sbjct: 151 FYRPTAVIYDLDF 163


>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid
           biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm,
           lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
          Length = 343

 Score = 26.9 bits (60), Expect = 1.2
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 19  FHQPRQVLADSVT 31
           FHQP+ V  D   
Sbjct: 147 FHQPKAVYMDLAF 159


>1mkf_A M3; decoy receptor, PSI, protein structure initiative; 2.10A {Murid
           herpesvirus 4} SCOP: b.116.1.1 PDB: 1ml0_A 2nyz_A 2nz1_A
          Length = 382

 Score = 26.7 bits (58), Expect = 1.3
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 8   LPVSQAGGLDHFHQPRQVLA---DSVTWNPHKLLTAPQQCSVFLTRHQSVLT 56
           L ++   GLD    P  V+A   DS   NP +  +    C++ +T H  V T
Sbjct: 279 LILADLAGLDSLTSPVYVMAAYFDSTHENPVRPSSKLYHCALQMTSHDGVWT 330


>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
           {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
           PDB: 1ord_A*
          Length = 730

 Score = 25.8 bits (56), Expect = 3.1
 Identities = 8/56 (14%), Positives = 12/56 (21%), Gaps = 15/56 (26%)

Query: 27  ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTEC---------------HSASASYLF 67
              V  + HK      Q S    +   +  +                 S S  Y  
Sbjct: 346 GIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPM 401


>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural
           genomics, protein structure initiative, PSI, joint
           center for structu genomics; 2.25A {Thermotoga maritima}
           SCOP: c.78.1.1 c.78.1.1
          Length = 325

 Score = 25.2 bits (56), Expect = 4.2
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)

Query: 15  GL-DHFHQPRQVLADSVTWNPHK 36
           GL D FH P Q LAD +T   + 
Sbjct: 141 GLTDEFH-PTQALADLMTIEENF 162


>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor
          biosynthesis, metal binding protein; 1.95A {Escherichia
          coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A
          1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A
          2nrp_A 2nqv_A 2nrs_A 2nqn_A
          Length = 411

 Score = 25.2 bits (56), Expect = 4.6
 Identities = 3/13 (23%), Positives = 5/13 (38%)

Query: 1  MELDPAALPVSQA 13
          ME     + +  A
Sbjct: 1  MEFTTGLMSLDTA 13


>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal
           binding-site, hexamer, cytoplasm, arginine metabolism;
           2.10A {Lactobacillus hilgardii}
          Length = 359

 Score = 24.9 bits (55), Expect = 6.0
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 15  GL-DHFHQPRQVLADSVTWNPHK 36
           GL D +H P Q+LAD +T   + 
Sbjct: 150 GLTDEWH-PTQMLADFMTVKENF 171


>1xkw_A Fe(III)-pyochelin receptor; TONB dependent receptor, membrane
           protein; HET: LDA 188; 2.00A {Pseudomonas aeruginosa}
          Length = 665

 Score = 24.9 bits (55), Expect = 6.1
 Identities = 3/19 (15%), Positives = 7/19 (36%)

Query: 16  LDHFHQPRQVLADSVTWNP 34
            D   Q  ++L     ++ 
Sbjct: 177 YDVADQGTRLLYGVTEFDL 195


>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A
           {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A
           1fvo_A 1c9y_A* 1fb5_A
          Length = 321

 Score = 24.8 bits (55), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 15  GL-DHFHQPRQVLADSVTWNPHK 36
           GL D +H P Q+LAD +T   H 
Sbjct: 129 GLSDLYH-PIQILADYLTLQEHY 150


>3efm_A FAUA, ferric alcaligin siderophore receptor; membrane protein,
           membrane receptor, membrane transporter, membrane, TONB
           box; 2.33A {Bordetella pertussis}
          Length = 707

 Score = 24.6 bits (54), Expect = 7.7
 Identities = 2/19 (10%), Positives = 6/19 (31%)

Query: 16  LDHFHQPRQVLADSVTWNP 34
           +      R+     V+ + 
Sbjct: 206 VHFLDTRRRTFYGVVSADL 224


>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds,
          immune system; 2.70A {Homo sapiens}
          Length = 126

 Score = 24.2 bits (53), Expect = 7.8
 Identities = 4/13 (30%), Positives = 8/13 (61%)

Query: 52 QSVLTECHSASAS 64
          Q VL +  + S++
Sbjct: 1  QPVLHQPPAMSSA 13


>3upd_A Otcase, ornithine carbamoyltransferase; structural genomics, center
           for structural genomics of infec diseases, csgid; 2.91A
           {Vibrio vulnificus}
          Length = 358

 Score = 24.5 bits (54), Expect = 8.0
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 15  GL-DHFHQPRQVLADSVTWNPHK 36
           GL D FH P Q+LAD +T   H 
Sbjct: 153 GLTDEFH-PTQILADFLTMLEHS 174


>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine
           transcarbamoylase, hydrolase; 2.50A {Mycoplasma
           penetrans} PDB: 4anf_A
          Length = 365

 Score = 24.5 bits (54), Expect = 8.2
 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 15  GL-DHFHQPRQVLADSVTWNPHK 36
           GL D  H P Q++AD +T     
Sbjct: 154 GLTDDEH-PTQIIADFMTMKEKF 175


>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A
           {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB:
           1ort_A
          Length = 335

 Score = 24.5 bits (54), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 15  GL-DHFHQPRQVLADSVTWNPHK 36
           GL D +H P Q+LAD +T   H 
Sbjct: 128 GLTDEYH-PTQMLADVLTMREHS 149


>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center
           for structural genomics of infec diseases, csgid,
           rossman fold; 2.70A {Campylobacter jejuni subsp}
          Length = 307

 Score = 24.4 bits (54), Expect = 8.5
 Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 2/23 (8%)

Query: 15  GL-DHFHQPRQVLADSVTWNPHK 36
            L + +H P QVL D  T     
Sbjct: 119 ALSELYH-PTQVLGDLFTIKEWN 140


>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography,
           ornithine carbamyoltransferase, carbamoyl phosphate, L-
           norvaline; 2.20A {Mycobacterium tuberculosis} PDB:
           2p2g_A
          Length = 307

 Score = 24.4 bits (54), Expect = 9.1
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 15  GL-DHFHQPRQVLADSVTWNPHK 36
            L D FH P QVLAD  T    K
Sbjct: 122 ALSDEFH-PCQVLADLQTIAERK 143


>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A
           {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB:
           1a1s_A
          Length = 315

 Score = 24.4 bits (54), Expect = 9.2
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 15  GL-DHFHQPRQVLADSVTWNPHK 36
           GL D  H P Q LAD +T    K
Sbjct: 129 GLSDFSH-PCQALADYMTIWEKK 150


>2w16_A FPVA, ferripyoverdine receptor; FPVA, iron, membrane, TONB BOX,
           transport, siderop cell membrane; HET: N8E PVE FHO;
           2.71A {Pseudomonas aeruginosa} PDB: 2o5p_A* 2iah_A*
           2w6t_A* 2w6u_A* 2w75_A* 2w76_A* 2w77_A* 2w78_A* 1xkh_A*
          Length = 772

 Score = 24.2 bits (53), Expect = 9.3
 Identities = 3/19 (15%), Positives = 9/19 (47%)

Query: 16  LDHFHQPRQVLADSVTWNP 34
           +DH+ +   V    + ++ 
Sbjct: 279 MDHYERKTSVYYGILEFDL 297


>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid,
           national institute of allergy AN infectious diseases;
           3.25A {Bacillus anthracis}
          Length = 340

 Score = 24.1 bits (53), Expect = 9.8
 Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 15  GL-DHFHQPRQVLADSVTWNPHK 36
           GL D  H P Q LAD +T     
Sbjct: 153 GLTDDHH-PCQALADLMTIYEET 174


>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics,
           NYSGXRC, target 9454P, operon, amino-acid biosynthesis,
           ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
          Length = 323

 Score = 24.1 bits (53), Expect = 9.9
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)

Query: 15  GL-DHFHQPRQVLADSVTWNPHK 36
            L DH H P QV+AD +T   + 
Sbjct: 131 ALTDHEH-PCQVVADLLTIRENF 152


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.133    0.438 

Gapped
Lambda     K      H
   0.267   0.0821    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,503,989
Number of extensions: 66008
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 49
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)