RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8011
         (102 letters)



>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 476

 Score = 52.9 bits (126), Expect = 3e-10
 Identities = 21/75 (28%), Positives = 31/75 (41%)

Query: 27  ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 86
           ADS  +NPHK L     CS    + ++ LT        YL    +      D     +  
Sbjct: 294 ADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPL 353

Query: 87  GRKPDVLKFWFMWKA 101
           GR+   LK WF+++ 
Sbjct: 354 GRRFRSLKMWFVFRM 368


>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
           {Escherichia coli [TaxId: 562]}
          Length = 450

 Score = 37.5 bits (86), Expect = 8e-05
 Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 15/95 (15%)

Query: 11  SQAGGLDHFHQP------RQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASAS 64
           +  G L  F  P      R     S++ + HK   AP  C   + R +  L +    +  
Sbjct: 243 ASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVD 302

Query: 65  YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMW 99
           YL             G   I   R    +   +  
Sbjct: 303 YL---------GGQIGTFAINFSRPAGQVIAQYYE 328


>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 445

 Score = 32.6 bits (73), Expect = 0.005
 Identities = 10/99 (10%), Positives = 24/99 (24%), Gaps = 3/99 (3%)

Query: 6   AALPVSQAGGLDHFHQ-PRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASAS 64
            A  +  +  +    Q  R    D+   +  K    P   ++    ++  + +       
Sbjct: 231 NAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG 290

Query: 65  YLFQKD--KFYDTKYDSGDKHIQCGRKPDVLKFWFMWKA 101
                       T    G    +   K     F ++   
Sbjct: 291 RASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQ 329


>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid
           herpesvirus 4, MuHV-4 [TaxId: 33708]}
          Length = 371

 Score = 27.8 bits (61), Expect = 0.19
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 2   ELDPA-ALPVSQAGGLDHFHQPRQVLA---DSVTWNPHKLLTAPQQCSVFLTRHQSVLT 56
            L     L ++   GLD    P  V+A   DS   NP +  +    C++ +T H  V T
Sbjct: 261 PLPAMDHLILADLAGLDSLTSPVYVMAAYFDSTHENPVRPSSKLYHCALQMTSHDGVWT 319


>d1js1x1 c.78.1.1 (X:1-163) Transcarbamylase-like protein
           {Bacteroides fragilis [TaxId: 817]}
          Length = 163

 Score = 23.5 bits (50), Expect = 4.8
 Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 1/24 (4%)

Query: 13  AGGLDHFHQPRQVLADSVTWNPHK 36
           +      H P Q  AD +T   +K
Sbjct: 140 SMEAATRH-PLQSFADLITIEEYK 162


>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic
           subunit {Archaeon Sulfolobus acidocaldarius [TaxId:
           2285]}
          Length = 146

 Score = 23.2 bits (49), Expect = 7.0
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 9   PVSQAGGLDHFHQPRQVLADSVTWNPHK 36
           PV  AG   H H P Q + D  T N H 
Sbjct: 118 PVINAGDGKHEH-PTQAVIDIYTINKHF 144


>d1iyra_ a.164.1.1 (A:) C-terminal domain of DFF45/ICAD (DFF-C
          domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 83

 Score = 22.6 bits (48), Expect = 8.9
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 21 QPRQVLADSVTWNPHKLLTAPQQCSVFLT-RHQSV 54
          +  + LA ++ W+  K  T  + C   L  R Q  
Sbjct: 42 EDPKALAVALNWDIKKTETVQEACERELALRLQQT 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.438 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,979
Number of extensions: 13260
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 12
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)