BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8012
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N ++ + L AAW G+ EIV++LL +GADVN +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
G+T LH+A + IV LL++GA N D G TPL L A +G E+ VLL
Sbjct: 78 TDGWTPLHLAAD-NGHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADRGHLEIVEVLL 133
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
G L+ AA G ++ V +L+ NGADVN G T LH+A + IV LL+HGA
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPE-IVEVLLKHGAD 72
Query: 165 YNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
N D G TPL L A G E+ VLL +
Sbjct: 73 VNARD-TDGWTPLHLAADNGHLEIVEVLLKY 102
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 34/148 (22%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQI---DKEIYSKNKAAARIAHSALELEERKAINDLLRL 72
P+ +A IG P+IV+ L HGA + D + ++ AA H LE+ E LL
Sbjct: 50 PLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH--LEIVEV-----LL-- 100
Query: 73 NLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
KY GA +N + L AA +G+ EIV++LL +GADVN
Sbjct: 101 -----------KY---------GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 133 FKSATGFTALHMACRFHDDD--SIVRKL 158
+ G TA ++ ++D I++KL
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
D VK IE+GA +N S + L YAA +G++EIV LL+ GADVN K + G T LH A
Sbjct: 18 DRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYA 77
Query: 146 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
+ IV+ L+ GA N D G+TPL +A K G +E+ +L+
Sbjct: 78 AK-EGHKEIVKLLISKGADVNAKD-SDGRTPLHYAAKEGHKEIVKLLI 123
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
VK I GA +N + L YAA +G++EIV LL+ GADVN + G T L +A R
Sbjct: 86 VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA-R 144
Query: 148 FHDDDSIVRKLLRHGAY 164
H ++ IV+ L + G +
Sbjct: 145 EHGNEEIVKLLEKQGGW 161
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
G LI AA G ++ V L++NGADVN + G T LH A + IV+ L+ GA
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAK-EGHKEIVKLLISKGAD 62
Query: 165 YNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
N D G+TPL +A K G +E+ +L+
Sbjct: 63 VNAKD-SDGRTPLHYAAKEGHKEIVKLLI 90
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA G+ EIV++LL NGADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
TG T LH+A + IV LL+HGA N D G TPL A K G E+ VLL
Sbjct: 78 LTGITPLHLAAATGHLE-IVEVLLKHGADVNAYD-NDGHTPLHLAAKYGHLEIVEVLL 133
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMAC 146
++ GA +N + L AA G+ EIV++LL +GADVN + G TA ++
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ + + DEV+ + +GA +N + + + L AA G EIV++LL NGADVN
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
+ G T LH+A + IV LL+HGA N D + G TPL L A G E+ VLL
Sbjct: 70 SAGITPLHLAA-YDGHLEIVEVLLKHGADVNAYD-RAGWTPLHLAALSGQLEIVEVLL 125
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 152
GA +N + L AA G EIV++LL +GADVN + A G TA ++ +D
Sbjct: 95 GADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQED 152
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA+ G+ EIV++LL NGADVN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
G T LH+A F + IV LL++GA N D G TPL L A +G E+ VLL +
Sbjct: 78 TLGSTPLHLAAHFGHLE-IVEVLLKNGADVNAKD-DNGITPLHLAANRGHLEIVEVLLKY 135
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+++GA +N + + L AA +G+ EIV++LL GADVN + G TA ++ ++
Sbjct: 100 LKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNE 159
Query: 152 D--SIVRKL 158
D I++KL
Sbjct: 160 DLAEILQKL 168
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA +G+ EIV++LL GADVN K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
G+T LH+A R IV LL+ GA N D K G TPL L A +G E+ VLL
Sbjct: 66 KDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLL 121
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 32/135 (23%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQI---DKEIYSKNKAAARIAHSALELEERKAINDLLRL 72
P+ +A + G +IV+ L GA + DK+ Y+ AAR H LE+
Sbjct: 38 PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH--LEI------------ 83
Query: 73 NLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
V+ ++ GA +N + + L AA +G+ EIV++LL GADVN
Sbjct: 84 ---------------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 133 FKSATGFTALHMACR 147
+ G T +A R
Sbjct: 129 AQDKFGKTPFDLAIR 143
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA +G+ EIV++LL GADVN K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
G+T LH+A R IV LL+ GA N D K G TPL L A +G E+ VLL
Sbjct: 66 KDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLL 121
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 32/136 (23%)
Query: 14 HKPIAIAIQIGDPQIVKELQNHGAQI---DKEIYSKNKAAARIAHSALELEERKAINDLL 70
+ P+ +A + G +IV+ L GA + DK+ Y+ AAR H LE+
Sbjct: 36 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH--LEI---------- 83
Query: 71 RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
V+ ++ GA +N + + L AA +G+ EIV++LL GAD
Sbjct: 84 -----------------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 131 VNFKSATGFTALHMAC 146
VN + G T +A
Sbjct: 127 VNAQDKFGKTPFDLAI 142
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N E + L A G+ EIV++LL NGADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVL 191
A GFT LH+A F I LL+HGA N D K GKT + G G ++ +L
Sbjct: 78 AIGFTPLHLAA-FIGHLEIAEVLLKHGADVNAQD-KFGKTAFDISIGNGNEDLAEIL 132
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA +G+ EIV++LL GADVN K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
G+T LH+A R IV LL+ GA N D K G TPL L A +G E+ VLL
Sbjct: 78 KDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLL 133
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 32/136 (23%)
Query: 14 HKPIAIAIQIGDPQIVKELQNHGAQI---DKEIYSKNKAAARIAHSALELEERKAINDLL 70
+ P+ +A + G +IV+ L GA + DK+ Y+ AAR H LE+
Sbjct: 48 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH--LEI---------- 95
Query: 71 RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
V+ ++ GA +N + + L AA +G+ EIV++LL GAD
Sbjct: 96 -----------------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Query: 131 VNFKSATGFTALHMAC 146
VN + G TA ++
Sbjct: 139 VNAQDKFGKTAFDISI 154
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + L AA G+ EIV++LL NGADVN K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
+ G T LH+A R IV LL++GA N D G TPL L A +G E+ VLL
Sbjct: 78 SLGVTPLHLAAR-RGHLEIVEVLLKNGADVNASDSH-GFTPLHLAAKRGHLEIVEVLL 133
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
R + V+ +++GA +N S + L AA +G+ EIV++LL NGADVN + G T
Sbjct: 89 RRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKT 148
Query: 141 ALHMACRFHDDD--SIVRKL 158
A ++ ++D I++KL
Sbjct: 149 AFDISIDNGNEDLAEILQKL 168
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
D VK IE+GA +N S + L +AA G++E+V LL+ GADVN K + G T LH A
Sbjct: 18 DRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA 77
Query: 146 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
+ +V+ L+ GA N D G+TPL HA + G +EV +L+
Sbjct: 78 AE-NGHKEVVKLLISKGADVNAKD-SDGRTPLHHAAENGHKEVVKLLI 123
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
G LI AA G ++ V L++NGADVN + G T LH A + +V+ L+ GA
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAE-NGHKEVVKLLISKGAD 62
Query: 165 YNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
N D G+TPL HA + G +EV +L+
Sbjct: 63 VNAKD-SDGRTPLHHAAENGHKEVVKLLI 90
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
VK I GA +N + L +AA G++E+V LL+ GADVN + G T L +A R
Sbjct: 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA-R 144
Query: 148 FHDDDSIVRKLLRHGAY 164
H ++ +V+ L + G +
Sbjct: 145 EHGNEEVVKLLEKQGGW 161
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ I +GA +N + L AA G+ EIV++LL +GADV+
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
GFT LH+A IV LL++GA N D TG TPL L A +G E+ VLL +
Sbjct: 78 VYGFTPLHLAA-MTGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLEIVEVLLKY 135
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 26/130 (20%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ +A G +IV+ L HGA +D AA + L L +++ + L
Sbjct: 50 PLHLAAVSGHLEIVEVLLKHGADVD--------AADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ GA +N + L AA +G+ EIV++LL GADVN +
Sbjct: 102 Y------------------GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Query: 136 ATGFTALHMA 145
G TA ++
Sbjct: 144 KFGKTAFDIS 153
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
++ + D VK +E+GA +N S + L AA G++E+V LLL GAD N K
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
+ G T LH+A + +V+ LL GA N D GKTPL L A G +EV +LL
Sbjct: 68 SDGKTPLHLAAE-NGHKEVVKLLLSQGADPNAKD-SDGKTPLHLAAENGHKEVVKLLL 123
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 104 RCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 163
G LI AA G ++ V LL+NGADVN + G T LH+A + +V+ LL GA
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAE-NGHKEVVKLLLSQGA 61
Query: 164 YYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
N D GKTPL L A G +EV +LL
Sbjct: 62 DPNAKD-SDGKTPLHLAAENGHKEVVKLLL 90
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
VK + GA N + L AA G++E+V LLL GAD N + G T L +A R
Sbjct: 86 VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLA-R 144
Query: 148 FHDDDSIVRKLLRHGAYY 165
H ++ +V+ L + G +
Sbjct: 145 EHGNEEVVKLLEKQGGWL 162
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N S + L AA+ G+ EIV++LL NGADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 136 ATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
+ G T LH+A R H + +V LL++GA N D G TPL L A G E+ VLL
Sbjct: 78 SLGVTPLHLAADRGHLE--VVEVLLKNGADVNAND-HNGFTPLHLAANIGHLEIVEVLL 133
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+++GA +N + + L AA G+ EIV++LL +GADVN + G TA ++ ++
Sbjct: 100 LKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 152 D--SIVRKL 158
D I++KL
Sbjct: 160 DLAEILQKL 168
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + L AA G+ EIV++LL NGADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 136 ATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLY 193
+G T LH+A R H + IV LL++GA N D G TPL L A G E+ VLL
Sbjct: 78 FSGSTPLHLAAKRGHLE--IVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 194 F 194
+
Sbjct: 135 Y 135
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 26/131 (19%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ +A ++G +IV+ L +GA ++ +S + + L L ++ +++ + L
Sbjct: 50 PLHLAARVGHLEIVEVLLKNGADVNALDFSGS--------TPLHLAAKRGHLEIVEVLLK 101
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ GA +N + L AA G+ EIV++LL GADVN +
Sbjct: 102 Y------------------GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQD 143
Query: 136 ATGFTALHMAC 146
G TA ++
Sbjct: 144 KFGKTAFDISI 154
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA KG+ EIV++LL +GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
G T LH+A + + IV LL++GA N D G TPL L A G E+ VLL +
Sbjct: 78 KMGDTPLHLAALYGHLE-IVEVLLKNGADVNATD-TYGFTPLHLAADAGHLEIVEVLLKY 135
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ +A G +IV+ L HGA ++ AA ++ + L L A+ L +
Sbjct: 50 PLHLAAIKGHLEIVEVLLKHGADVN--------AADKMGDTPLHL---AALYGHLEIVEV 98
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
LKN GA +N + + L AA G+ EIV++LL GADVN +
Sbjct: 99 LLKN---------------GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQD 143
Query: 136 ATGFTALHMACRFHDDD--SIVRKL 158
G TA ++ ++D I++KL
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA+ G+ EIV++LL +GADV+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
G+T LH+A + + IV LL++GA N +D G TPL A K G E+ VLL
Sbjct: 78 VFGYTPLHLAAYWGHLE-IVEVLLKNGADVNAMD-SDGMTPLHLAAKWGYLEIVEVLL 133
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 34/148 (22%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKE---IYSKNKAAARIAHSALELEERKAINDLLRL 72
P+ +A G +IV+ L HGA +D Y+ AA H LE+ E
Sbjct: 50 PLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGH--LEIVEV--------- 98
Query: 73 NLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
LKN GA +N + L AA GY EIV++LL +GADVN
Sbjct: 99 ---LLKN---------------GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 133 FKSATGFTALHMACRFHDDD--SIVRKL 158
+ G TA ++ ++D I++KL
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA G+ EIV++LL +GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
G T LH+A + IV LL+HGA N VD G TPL L A G E+ VLL
Sbjct: 78 IMGSTPLHLAALIGHLE-IVEVLLKHGADVNAVD-TWGDTPLHLAAIMGHLEIVEVLL 133
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
++ GA +N + L AA G+ EIV++LL +GADVN + G TA ++ ++
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 152 D--SIVRKL 158
D I++KL
Sbjct: 160 DLAEILQKL 168
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA G+ EIV++LL +GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
G T LH+A + IV LL+HGA N VD G TPL L A G E+ VLL
Sbjct: 78 IXGSTPLHLAALIGHLE-IVEVLLKHGADVNAVD-TWGDTPLHLAAIMGHLEIVEVLL 133
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
++ GA +N + L AA G+ EIV++LL +GADVN + G TA ++ ++
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 152 D--SIVRKL 158
D I++KL
Sbjct: 160 DLAEILQKL 168
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
D VK +E+GA N S + L YAA G++EIV LLL GAD N K + G T LH A
Sbjct: 18 DRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYA 77
Query: 146 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
+ IV+ LL GA N D G+TPL +A + G +E+ +LL
Sbjct: 78 AE-NGHKEIVKLLLSKGADPNAKD-SDGRTPLHYAAENGHKEIVKLLL 123
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
VK + GA N + L YAA G++EIV LLL GAD N + G T L +A R
Sbjct: 86 VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA-R 144
Query: 148 FHDDDSIVRKLLRHGAY 164
H ++ IV+ L + G +
Sbjct: 145 EHGNEEIVKLLEKQGGW 161
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
G LI AA G ++ V LL+NGAD N + G T LH A + IV+ LL GA
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAE-NGHKEIVKLLLSKGAD 62
Query: 165 YNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
N D G+TPL +A + G +E+ +LL
Sbjct: 63 PNAKD-SDGRTPLHYAAENGHKEIVKLLL 90
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ +GA +N + + L AA G+ EIV++LL NGADVN
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
TG T LH+A + D IV LL+HGA N D K GKT
Sbjct: 78 NTGRTPLHLAA-WADHLEIVEVLLKHGADVNAQD-KFGKTAF 117
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+++GA +N + + L AAW + EIV++LL +GADVN + G TA ++ ++
Sbjct: 67 LKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 152 D--SIVRKL 158
D I++KL
Sbjct: 127 DLAEILQKL 135
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
R+ + VK +E GA +N + + L AA G+ E+V LLL+ GADVN K G T
Sbjct: 11 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70
Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
LH+A R + +V+ LL GA N D K G+TPL L A G EV +LL
Sbjct: 71 PLHLAAR-NGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLL 121
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ L AA G+ E+V LLL+ GADVN K G T LH+A R + +V+ LL GA N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGADVN 62
Query: 167 VVDGKTGKTPL-LHAGKGAREVNTVLL 192
D K G+TPL L A G EV +LL
Sbjct: 63 AKD-KNGRTPLHLAARNGHLEVVKLLL 88
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQI---DKEIYSKNKAAARIAH---SALELEERKAINDL 69
P+ +A + G ++VK L GA + DK + AAR H L LE +N
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 70 LRLNLDFLKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
+ L N + EV K + E GA +N + + L AA G+ E+V LLL+ G
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 129 A 129
A
Sbjct: 125 A 125
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + L AA+ G+ EIV++LL NGADVN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
G T L +A F + IV LL++GA N D G TPL L A G E+ VLL
Sbjct: 78 HAGMTPLRLAALFGHLE-IVEVLLKNGADVNAND-MEGHTPLHLAAMFGHLEIVEVLL 133
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+++GA +N + + L AA G+ EIV++LL NGADVN + G TA ++ ++
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 152 D--SIVRKL 158
D I++KL
Sbjct: 160 DLAEILQKL 168
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA N + L AA G+ EIV++LL NGADVN
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
G T LH+A + IV LL++GA N D TG TPL L A G E+ VLL
Sbjct: 66 TNGTTPLHLAASLGHLE-IVEVLLKYGADVNAKDA-TGITPLYLAAYWGHLEIVEVLL 121
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
G L+ AA G ++ V +L+ NGAD N G T LHMA + IV LLR+GA
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLE-IVEVLLRNGAD 60
Query: 165 YNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
N VD G TPL L A G E+ VLL +
Sbjct: 61 VNAVD-TNGTTPLHLAASLGHLEIVEVLLKY 90
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 152
GA +N + L AA+ G+ EIV++LL +GADVN + G TA ++ ++D
Sbjct: 91 GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNED 148
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N E + L AA G+ EIV++LL GADVN +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 136 ATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
G T LH+A R H + IV LL+HGA N D K GKT
Sbjct: 78 NFGITPLHLAAIRGHLE--IVEVLLKHGADVNAQD-KFGKTAF 117
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD-- 152
GA +N + L AA +G+ EIV++LL +GADVN + G TA ++ ++D
Sbjct: 70 GADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 153 SIVRKL 158
I++KL
Sbjct: 130 EILQKL 135
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA + EIV++LL NGADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTP 176
A G T LH+ + + IV LL+HGA N D K GKT
Sbjct: 78 AIGETPLHLVAMYGHLE-IVEVLLKHGADVNAQD-KFGKTA 116
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
G L+ AA G ++ V +L+ NGADVN + G T LH+A +D IV LL++GA
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAA-MNDHLEIVEVLLKNGAD 72
Query: 165 YNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
N +D G+TPL L A G E+ VLL
Sbjct: 73 VNAIDA-IGETPLHLVAMYGHLEIVEVLL 100
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+++GA +N + L A G+ EIV++LL +GADVN + G TA ++ ++
Sbjct: 67 LKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 152 D--SIVRKL 158
D I++KL
Sbjct: 127 DLAEILQKL 135
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + + L AA + EIV++LL +GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
G T LH+A F + IV LL+HGA N D K GKT
Sbjct: 78 NDGSTPLHLAALFGHLE-IVEVLLKHGADVNAQD-KFGKTAF 117
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
G L+ AA G ++ V +L+ NGADVN G T LH+A + D IV LL+HGA
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADY-DHLEIVEVLLKHGAD 72
Query: 165 YNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
N D G TPL L A G E+ VLL
Sbjct: 73 VNAHD-NDGSTPLHLAALFGHLEIVEVLL 100
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD-- 152
GA +N + L AA G+ EIV++LL +GADVN + G TA ++ ++D
Sbjct: 70 GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 153 SIVRKL 158
I++KL
Sbjct: 130 EILQKL 135
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA G+ EIV++LL GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
G T LH+A + IV LL+HGA N D G TPL L A G E+ VLL +
Sbjct: 78 NYGATPLHLAAD-NGHLEIVEVLLKHGADVNAKD-YEGFTPLHLAAYDGHLEIVEVLLKY 135
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
GA +N + L AA G+ EIV++LL +GADVN K GFT LH+A + I
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAA-YDGHLEI 128
Query: 155 VRKLLRHGAYYNVVDGKTGKTPL 177
V LL++GA N D K GKT
Sbjct: 129 VEVLLKYGADVNAQD-KFGKTAF 150
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 28/147 (19%)
Query: 14 HKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLN 73
H P+ +A + G +IV+ L +GA ++ + + A H A + + + LL+
Sbjct: 48 HTPLHLAAKTGHLEIVEVLLKYGADVN----AWDNYGATPLHLAADNGHLEIVEVLLK-- 101
Query: 74 LDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNF 133
GA +N + L AA+ G+ EIV++LL GADVN
Sbjct: 102 --------------------HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Query: 134 KSATGFTALHMACRFHDDD--SIVRKL 158
+ G TA ++ ++D I++KL
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 65 AINDLLRLNLDFLKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDL 123
+++++ NL + S K DE+K+ I D + + + +AL +A G+ EIV+
Sbjct: 4 CVSNIMICNLAY-----SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEF 58
Query: 124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
LL G VN K G++ LH+A D+ IV+ LL GA+ N V+ + G TPL +A
Sbjct: 59 LLQLGVPVNDKDDAGWSPLHIAASAGXDE-IVKALLVKGAHVNAVN-QNGCTPLHYAASK 116
Query: 184 AREVNTVLL 192
R V+L
Sbjct: 117 NRHEIAVML 125
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
VK + GA +N ++ + L YAA K EI +LL+ GA+ + K TA+H A
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 148 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
+ +V LL + A N+ D + G TPL
Sbjct: 149 -KGNLKMVHILLFYKASTNIQDTE-GNTPL 176
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 32/170 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ IA G +IVK L GA ++ + N+ H A
Sbjct: 76 PLHIAASAGXDEIVKALLVKGAHVN----AVNQNGCTPLHYA------------------ 113
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
N+++ +E GA + +A+ AA KG ++V +LL A N +
Sbjct: 114 ----ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 136 ATGFTALHMACRFHDDDSI--VRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
G T LH+AC D++ + + L+ GA ++ K KTPL A G
Sbjct: 170 TEGNTPLHLAC---DEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGG 215
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 65 AINDLLRLNLDFLKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDL 123
+++++ NL + S K DE+K+ I D + + + +AL +A G+ EIV+
Sbjct: 4 CVSNIMICNLAY-----SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEF 58
Query: 124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
LL G VN K G++ LH+A D+ IV+ LL GA+ N V+ + G TPL +A
Sbjct: 59 LLQLGVPVNDKDDAGWSPLHIAASAGRDE-IVKALLVKGAHVNAVN-QNGCTPLHYAASK 116
Query: 184 AREVNTVLL 192
R V+L
Sbjct: 117 NRHEIAVML 125
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
VK + GA +N ++ + L YAA K EI +LL+ GA+ + K TA+H A
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 148 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
+ +V LL + A N+ D + G TPL
Sbjct: 149 -KGNLKMVHILLFYKASTNIQDTE-GNTPL 176
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 32/170 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ IA G +IVK L GA ++ + N+ H A
Sbjct: 76 PLHIAASAGRDEIVKALLVKGAHVN----AVNQNGCTPLHYA------------------ 113
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
N+++ +E GA + +A+ AA KG ++V +LL A N +
Sbjct: 114 ----ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 136 ATGFTALHMACRFHDDDSI--VRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
G T LH+AC D++ + + L+ GA ++ K KTPL A G
Sbjct: 170 TEGNTPLHLAC---DEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGG 215
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA +G+ EIV++LL +GADVN
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
+ G T LH+A + IV LL +GA N D K GKT
Sbjct: 78 SWGRTPLHLAATVGHLE-IVEVLLEYGADVNAQD-KFGKTAF 117
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMAC-RFHDDDSIVRKLLRHGA 163
G L+ A G ++ V +L+ NGADVN G T LH+A R H + IV LL+HGA
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLE--IVEVLLKHGA 71
Query: 164 YYNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
N D G+TPL L A G E+ VLL +
Sbjct: 72 DVNASD-SWGRTPLHLAATVGHLEIVEVLLEY 102
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
++ GA +N S + L AA G+ EIV++LL+ GADVN + G TA ++ ++
Sbjct: 67 LKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 152 D--SIVRKL 158
D I++KL
Sbjct: 127 DLAEILQKL 135
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA +G+ EIV++LL +GADVN +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
G T LH+A + IV LL +GA N D K GKT
Sbjct: 78 IWGRTPLHLAATVGHLE-IVEVLLEYGADVNAQD-KFGKTAF 117
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
++ GA +N + L AA G+ EIV++LL+ GADVN + G TA ++ ++
Sbjct: 67 LKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 152 D--SIVRKL 158
D I++KL
Sbjct: 127 DLAEILQKL 135
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 65 AINDLLRLNLDFLKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDL 123
+++L+ NL + S K +E+K++I D + + + +AL +A G+ EIV+
Sbjct: 5 CVSNLMVCNLAY-----SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF 59
Query: 124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
LL G VN K G++ LH+A D+ IV+ LL GA N V+ + G TPL +A
Sbjct: 60 LLQLGVPVNDKDDAGWSPLHIAASAGRDE-IVKALLGKGAQVNAVN-QNGCTPLHYAASK 117
Query: 184 AREVNTVLL 192
R V+L
Sbjct: 118 NRHEIAVML 126
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 32/170 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ IA G +IVK L GAQ++ + N+ H A
Sbjct: 77 PLHIAASAGRDEIVKALLGKGAQVN----AVNQNGCTPLHYA------------------ 114
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
N+++ +E GA + +A+ AA KG +++ +LL A N +
Sbjct: 115 ----ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 170
Query: 136 ATGFTALHMACRFHDDDSI--VRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
G T LH+AC D++ + + L+ GA ++ K KTPL A G
Sbjct: 171 TEGNTPLHLAC---DEERVEEAKLLVSQGASI-YIENKEEKTPLQVAKGG 216
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 65 AINDLLRLNLDFLKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDL 123
+++L+ NL + S K +E+K++I D + + + +AL +A G+ EIV+
Sbjct: 4 CVSNLMVCNLAY-----SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF 58
Query: 124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
LL G VN K G++ LH+A D+ IV+ LL GA N V+ + G TPL +A
Sbjct: 59 LLQLGVPVNDKDDAGWSPLHIAASAGRDE-IVKALLGKGAQVNAVN-QNGCTPLHYAASK 116
Query: 184 AREVNTVLL 192
R V+L
Sbjct: 117 NRHEIAVML 125
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 32/170 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ IA G +IVK L GAQ++ + N+ H A
Sbjct: 76 PLHIAASAGRDEIVKALLGKGAQVN----AVNQNGCTPLHYA------------------ 113
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
N+++ +E GA + +A+ AA KG +++ +LL A N +
Sbjct: 114 ----ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 169
Query: 136 ATGFTALHMACRFHDDDSI--VRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
G T LH+AC D++ + + L+ GA ++ K KTPL A G
Sbjct: 170 TEGNTPLHLAC---DEERVEEAKLLVSQGASI-YIENKEEKTPLQVAKGG 215
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA +G+ EIV++LL +GADVN
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
G T LH+A + IV LL +GA N D K GKT
Sbjct: 78 IWGRTPLHLAATVGHLE-IVEVLLEYGADVNAQD-KFGKTAF 117
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD-- 152
GA +N S + L AA G+ EIV++LL+ GADVN + G TA ++ ++D
Sbjct: 70 GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 153 SIVRKL 158
I++KL
Sbjct: 130 EILQKL 135
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L G+ EI+++LL ADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 136 ATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLY 193
+G+T LH+A R H + IV LL++GA N +D G TPL L A G E+ VLL
Sbjct: 78 KSGWTPLHLAAYRGHLE--IVEVLLKYGADVNAMD-YQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 194 F 194
+
Sbjct: 135 Y 135
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 96 ACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV 155
A +N S + + L AA++G+ EIV++LL GADVN G+T LH+A IV
Sbjct: 71 ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAE-DGHLEIV 129
Query: 156 RKLLRHGAYYNVVDGKTGKTPL 177
LL++GA N D K GKT
Sbjct: 130 EVLLKYGADVNAQD-KFGKTAF 150
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
G L+ AA G ++ V +L+ NGADVN G T LH+ + I+ LL++ A
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVN-NGHLEIIEVLLKYAAD 72
Query: 165 YNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
N D K+G TPL L A +G E+ VLL +
Sbjct: 73 VNASD-KSGWTPLHLAAYRGHLEIVEVLLKY 102
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD-- 152
GA +N + + L AA G+ EIV++LL GADVN + G TA ++ ++D
Sbjct: 103 GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 153 SIVRKL 158
I++KL
Sbjct: 163 EILQKL 168
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
R+ + VK +E GA +N + + L AA G+ E+V LLL+ GADVN K G T
Sbjct: 11 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70
Query: 141 ALHMACRFHDDDSIVRKLLRHGAY 164
LH+A R + +V+ LL GAY
Sbjct: 71 PLHLAAR-NGHLEVVKLLLEAGAY 93
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ L AA G+ E+V LLL+ GADVN K G T LH+A R + +V+ LL GA N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGADVN 62
Query: 167 VVDGKTGKTPL-LHAGKGAREVNTVLL 192
D K G+TPL L A G EV +LL
Sbjct: 63 AKD-KNGRTPLHLAARNGHLEVVKLLL 88
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 77 LKNVRSNKY-DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L N N + +EVKK + GA +N S+ + L AA G+ EIV LLL GADVN +S
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 136 ATGFTALHMACR 147
G T H+A +
Sbjct: 73 KDGNTPEHLAKK 84
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ GA +N S+ + A G+ EIV LL GADVN +S
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
G +NV+S+ S L AA G +++ LLL +GA+ ++A LH+AC+ +
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ-QGHFQV 134
Query: 155 VRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTI 209
V+ LL A N D +G TPL++A G HE+ L+ + +I
Sbjct: 135 VKCLLDSNAKPNKKD-LSGNTPLIYACSGGH----------HELVALLLQHGASI 178
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ LIYA G+ E+V LLL +GA +N + G TALH A +V LL HGA
Sbjct: 154 TPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV-IEKHVFVVELLLLHGASVQ 212
Query: 167 VVDGK 171
V++ +
Sbjct: 213 VLNKR 217
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
++ GA IN S+ + +AL A + + +V+LLL +GA V + TA+ A +
Sbjct: 172 LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA----EQ 227
Query: 152 DSIVRKLLR 160
+S + +LL+
Sbjct: 228 NSKIMELLQ 236
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 38/191 (19%)
Query: 82 SNKYDEVKKNIEDGACIN-VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
+N+ D VK I GA ++ + + + L +A +G+ +V L+ GAD + G +
Sbjct: 52 NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111
Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEI-- 198
+H+A +F SIV L+ G +++D + G TPL+ A V+ L +
Sbjct: 112 CIHLAAQF-GHTSIVAYLIAKGQDVDMMD-QNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169
Query: 199 -------------FKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDA 245
+ ++A N T I SL+LE +N
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVI--------SLLLEAGANVD------------AQNIK 209
Query: 246 GETILDIAKKR 256
GE+ LD+AK+R
Sbjct: 210 GESALDLAKQR 220
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 43/156 (27%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQ---IDKEIYSKNKAAARIAHSAL-----------ELE 61
P+ A + G +V +L +GA ID E S AA+ H+++ ++
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 62 ERKAINDLL------------RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSAL 109
++ + L+ RL L F NV N D+ KN +AL
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTF--NVSVNLGDKYHKN---------------TAL 181
Query: 110 IYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
+A G ++ LLL+ GA+V+ ++ G +AL +A
Sbjct: 182 HWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 101 SSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 160
++ R + L A+ KG V+ LL NG+D N K G+T LH AC H +V LL+
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACN-HGHLKVVELLLQ 64
Query: 161 HGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLLYF 194
H A N G +PL A K G ++ +LL +
Sbjct: 65 HKALVNTT-GYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+++G+ NV + L A G+ ++V+LLL + A VN + LH A +
Sbjct: 30 LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHV 89
Query: 152 DSIVRKLLRHGAYYNVVD 169
D IV+ LL +GA N V+
Sbjct: 90 D-IVKLLLSYGASRNAVN 106
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 76 FLKNVRSNKYDEVKK--NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNF 133
L+ ++ + VKK ++ C ++ R + L +AA +V+ LL +GADV+
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVL 191
K G LH AC + + + L++HGA NV D K LH A KG E+ +L
Sbjct: 71 KDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVAD--LWKFTPLHEAAAKGKYEICKLL 127
Query: 192 L 192
L
Sbjct: 128 L 128
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
++ GA +NV+ + L AA KG EI LLL +GAD K+ G T L + D
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL---VKDG 151
Query: 152 DSIVRKLLR 160
D+ ++ LLR
Sbjct: 152 DTDIQDLLR 160
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 76 FLKNVRSNKYDEVKK--NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNF 133
L+ ++ + VKK ++ C ++ R + L +AA +V+ LL +GADV+
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVL 191
K G LH AC + + + L++HGA NV D K LH A KG E+ +L
Sbjct: 75 KDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVAD--LWKFTPLHEAAAKGKYEICKLL 131
Query: 192 L 192
L
Sbjct: 132 L 132
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
++ GA +NV+ + L AA KG EI LLL +GAD K+ G T L + D
Sbjct: 99 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL---VKDG 155
Query: 152 DSIVRKLLR 160
D+ ++ LLR
Sbjct: 156 DTDIQDLLR 164
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 76 FLKNVRSNKYDEVKK--NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNF 133
L+ ++ + VKK ++ C ++ R + L +AA +V+ LL +GADV+
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVL 191
K G LH AC + + + L++HGA NV D K LH A KG E+ +L
Sbjct: 73 KDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVAD--LWKFTPLHEAAAKGKYEICKLL 129
Query: 192 L 192
L
Sbjct: 130 L 130
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
++ GA +NV+ + L AA KG EI LLL +GAD K+ G T L + D
Sbjct: 97 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL---VKDG 153
Query: 152 DSIVRKLLR 160
D+ ++ LLR
Sbjct: 154 DTDIQDLLR 162
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
G+ + A G E V LL+ GAD+N+ + G TALH AC D+ +V+ L+ +GA
Sbjct: 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC-IDDNVDMVKFLVENGANI 99
Query: 166 NVVDGKTGKTPL 177
N D + G PL
Sbjct: 100 NQPDNE-GWIPL 110
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
FL S +EV + +E GA IN ++ +AL A ++V L++NGA++N
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 136 ATGFTALHMA--CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
G+ LH A C + D I L+ GA+ V+ + G TPL
Sbjct: 104 NEGWIPLHAAASCGYLD---IAEYLISQGAHVGAVNSE-GDTPL 143
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF 148
G+AL AA KGY E++ LL+ DVN K G+T LH A +
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 98 INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157
+ S R + L AA IV LLL +GADV+ K G LH AC + + +
Sbjct: 51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYE-VTEL 109
Query: 158 LLRHGAYYNVVDGKTGKTPLLHAGKGAR-EVNTVLL 192
LL+HGA N +D TPL A R EV ++LL
Sbjct: 110 LLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSLLL 144
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMAC-RFHDDDSIVRKLLRHGA 163
C A ++ K ++ +LLL GA+VN K+ T LH+A R H+D ++ L +HGA
Sbjct: 217 CAVASLHPKRK---QVAELLLRKGANVNEKNKDFMTPLHVAAERAHND--VMEVLHKHGA 271
Query: 164 YYNVVDGKTGKTPL 177
N +D G+T L
Sbjct: 272 KMNALDS-LGQTAL 284
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 85 YDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 144
Y+ + ++ GAC+N + L AA K E+ LLL +GAD + G +A+ M
Sbjct: 104 YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163
Query: 145 A 145
A
Sbjct: 164 A 164
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 144
GA +N +AL AA G+ + LLL G+D + S GFTA M
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
+ GA +N ++ + L AA + + +++++L +GA +N + G TALH A
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDK---EIYSKNKAAARIAHSALE---LEERKAINDL 69
P+ +A +G IVK L GA + ++ + AAR H+ + L+ + +N
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 70 LRLNLDFLK-NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
+ + L R + VK +E+ A N+++ + L AA +G+ E V LL+
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 129 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
A + GFT LH+A ++ + LL A+ N GK G TPL
Sbjct: 137 ASQACMTKKGFTPLHVAAKY-GKVRVAELLLERDAHPNAA-GKNGLTPL 183
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
+ N+ + + ++ G N S + + L AA +G+ E+V LLL A+ N + +G T
Sbjct: 221 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 280
Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT--GKTPL 177
LH+ + + L++HG +VD T G TPL
Sbjct: 281 PLHLVAQ-EGHVPVADVLIKHGV---MVDATTRMGYTPL 315
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
R+ + K +++ A +N ++ + L AA G+ +V LLL+N A+ N + G T
Sbjct: 56 RAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT 115
Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
LH+A R ++++ L + + + K G TPL A K G V +LL
Sbjct: 116 PLHIAAREGHVETVLALLEKEASQACMT--KKGFTPLHVAAKYGKVRVAELLL 166
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 99 NVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKL 158
N+ ++ + L A +G+ + D+L+ +G V+ + G+T LH+A + + +V+ L
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY-GNIKLVKFL 330
Query: 159 LRHGAYYNVVDGKTGKTPLLHAG-KGAREVNTVLL 192
L+H A N K G +PL A +G ++ T+LL
Sbjct: 331 LQHQADVN-AKTKLGYSPLHQAAQQGHTDIVTLLL 364
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
VK ++ A +N ++ S L AA +G+ +IV LLL NGA N S+ G T L +A R
Sbjct: 327 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386
Query: 148 F 148
Sbjct: 387 L 387
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 10/187 (5%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQID---KEIYSKNKAAARIAHSALE--LEERKAINDLL 70
P+ +A + G ++ K L + A+++ K+ + AARI H+ + L E A +L
Sbjct: 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109
Query: 71 RL--NLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
+ R + V +E A +++ + L AA G + +LLL+
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169
Query: 129 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAR-EV 187
A N G T LH+A H++ IV+ LL G + G TPL A K + EV
Sbjct: 170 AHPNAAGKNGLTPLHVAVH-HNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEV 227
Query: 188 NTVLLYF 194
LL +
Sbjct: 228 ARSLLQY 234
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
IE IN + E + L++AA G +V+ LL NGAD +AL +AC
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 98
Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
D IV+ LL G N D G TPLL+A G
Sbjct: 99 D-IVKMLLDCGVDVNEYDWN-GGTPLLYAVHG 128
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
E P+ A G +V+ L +GA D ++ K + SAL L K D+++
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQNGA--DPQLLGKGR------ESALSLACSKGYTDIVK 102
Query: 72 LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
+ LD V N+YD G+ L+YA + + V +LL++GAD
Sbjct: 103 MLLDC--GVDVNEYDW----------------NGGTPLLYAVHGNHVKCVKMLLESGADP 144
Query: 132 NFKSATGFTALHMA 145
++ +G+ ++ +A
Sbjct: 145 TIETDSGYNSMDLA 158
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
R + V+ I GA INV + + L AA G+ +IV LL AD+N + G
Sbjct: 47 CREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106
Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREV 187
LH AC F D + L+ +GA ++ + K G+ P+ A RE+
Sbjct: 107 VPLHYAC-FWGQDQVAEDLVANGALVSICN-KYGEMPVDKAKAPLREL 152
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 121 VDLLLDNGA-DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-L 178
V L LDN D+N GF+ LH ACR ++V L+ GA NV++ + TPL L
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIMRGARINVMN-RGDDTPLHL 78
Query: 179 HAGKGAREVNTVLLYFIHEI 198
A G R++ LL + +I
Sbjct: 79 AASHGHRDIVQKLLQYKADI 98
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
IE IN + E + L++AA G +V+ LL NGAD +AL +AC
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
D IV+ LL G N D G TPLL+A G
Sbjct: 81 D-IVKMLLDCGVDVNEYDWN-GGTPLLYAVHG 110
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
E P+ A G +V+ L +GA D ++ K + SAL L K D+++
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQNGA--DPQLLGKGR------ESALSLACSKGYTDIVK 84
Query: 72 LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
+ LD V N+YD G+ L+YA + + V +LL++GAD
Sbjct: 85 MLLDC--GVDVNEYDW----------------NGGTPLLYAVHGNHVKCVKMLLESGADP 126
Query: 132 NFKSATGFTALHMA 145
++ +G+ ++ +A
Sbjct: 127 TIETDSGYNSMDLA 140
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
IE IN + E + L++AA G +V+ LL NGAD +AL +AC
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82
Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
D IV+ LL G N D G TPLL+A G
Sbjct: 83 D-IVKMLLDCGVDVNEYD-WNGGTPLLYAVHG 112
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
E P+ A G +V+ L +GA D ++ K + SAL L K D+++
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGA--DPQLLGKGR------ESALSLACSKGYTDIVK 86
Query: 72 LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
+ LD V N+YD G+ L+YA + + V +LL++GAD
Sbjct: 87 MLLDC--GVDVNEYDW----------------NGGTPLLYAVHGNHVKCVKMLLESGADP 128
Query: 132 NFKSATGFTALHMA 145
++ +G+ ++ +A
Sbjct: 129 TIETDSGYNSMDLA 142
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
R + V+ I GA INV + + L AA G+ +IV LL AD+N + G
Sbjct: 42 CREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 101
Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREV 187
LH AC F D + L+ +GA ++ + K G+ P+ A RE+
Sbjct: 102 VPLHYAC-FWGQDQVAEDLVANGALVSICN-KYGEMPVDKAKAPLREL 147
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 121 VDLLLDNGA-DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-L 178
V L LDN D+N GF+ LH ACR ++V L+ GA NV++ + TPL L
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIMRGARINVMN-RGDDTPLHL 73
Query: 179 HAGKGAREVNTVLLYFIHEI 198
A G R++ LL + +I
Sbjct: 74 AASHGHRDIVQKLLQYKADI 93
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 163
+ L AA +G+ IV++LL +GADVN K TALH A H+ +V L+++GA
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE-HNHQEVVELLIKYGA 124
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
++ GA +N +AL +A ++E+V+LL+ GADV+ +S
Sbjct: 87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA +N + + L AA +G+ EIV++LL GADVN +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 136 ATGFTALHMAC 146
G TA ++
Sbjct: 66 KFGKTAFDISI 76
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA-DVNFK 134
++ +N + VK I+ GA ++ + L AA KG+ E+V LL NG DVN +
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107
Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 192
G+T + A + D +V+ LL G+ N+ D + A G ++ +LL
Sbjct: 108 DDGGWTPMIWATEYKHVD-LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
V++N+ +K + G+ +N + L+++ GY E+ LL++GA+VN ++ G
Sbjct: 76 VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135
Query: 140 TALHMACRFHDDDSIVRKLLRHGA 163
T L +A ++ + IV+KLL GA
Sbjct: 136 TPLIVASKYGRSE-IVKKLLELGA 158
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 21/141 (14%)
Query: 59 ELEERKAINDLLRLNLDFLKNVRSN-------------KYDEVKKNIEDGACINVSSERC 105
++++ K+IN NLDFL+N R + + + K +E+ +
Sbjct: 13 KIKDEKSINQ----NLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEG 68
Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
+ALI+A I + LL G++VN K +G T L + F + + LL HGA
Sbjct: 69 STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE-MSYFLLEHGA-- 125
Query: 166 NVVDGK-TGKTPLLHAGKGAR 185
NV D G+TPL+ A K R
Sbjct: 126 NVNDRNLEGETPLIVASKYGR 146
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+E GA +N + + LI A+ G EIV LL+ GAD++ + TG TA A F
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180
Query: 152 DSI 154
+ I
Sbjct: 181 EVI 183
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA + + + L AA G+ E+V LLL+ GADVN +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 136 ATGFTALHMACRFHDDD 152
G TA ++ ++D
Sbjct: 70 KFGKTAFDISIDNGNED 86
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
+ V+ +E GA ++ ++ SAL A+ GY +IV LLL+ D+N G T L A
Sbjct: 50 ETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA 109
Query: 146 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLYFIHEIFK 200
R + V LL GA + +G TP+ L G R+V V+ I ++F+
Sbjct: 110 VR-GNHVKCVEALLARGADLT-TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ 163
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 75 DFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
+F+ +++ DEVK + G +N + E L YAA G EI++ LL GAD+N
Sbjct: 5 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 64
Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
T L ++ + S V+ LL GA V G G T L
Sbjct: 65 DKHHITPL-LSAVYEGHVSCVKLLLSKGA-DKTVKGPDGLTAL 105
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFK-SATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
+ L A+ GY IV+LL+ GADVN + G TALH+A + D +V LL+ GA
Sbjct: 116 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD-LVSLLLKCGADV 174
Query: 166 NVV 168
N V
Sbjct: 175 NRV 177
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%)
Query: 72 LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
L+L + ++ + +++ D A +N + + L A EI + LL G D
Sbjct: 9 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 68
Query: 132 NFKSATGFTALHMAC 146
+ G T LH+AC
Sbjct: 69 ELRDFRGNTPLHLAC 83
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
+ L A+ GY IV+LL+ GADVN + G TALH+A + D +V LL+ GA
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD-LVSLLLKCGADV 177
Query: 166 NVV 168
N V
Sbjct: 178 NRV 180
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 72 LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
L+L + ++ + +++ D A +N + + L A EI + LL G D
Sbjct: 12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71
Query: 132 NFKSATGFTALHMACR 147
+ G T LH+AC
Sbjct: 72 ELRDFRGNTPLHLACE 87
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
L+ R+ + DEV+ + +GA + + + L AA G+ E+V LLL+ GADV +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 136 ATGFTALHMACRFHDDD 152
G TA ++ ++D
Sbjct: 88 KFGKTAFDISIDNGNED 104
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 75 DFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
+F+ +++ DEVK + G +N + E L YAA G EI++ LL GAD+N
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGA 163
T L ++ + S V+ LL GA
Sbjct: 70 DKHHITPL-LSAVYEGHVSCVKLLLSKGA 97
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
GA IN + + L+ A ++G+ V LLL GAD K G TA D+
Sbjct: 63 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT-----DNQA 117
Query: 155 VRKLLR 160
++ LL+
Sbjct: 118 IKALLQ 123
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTAL--- 142
+ V+ +E GA ++ ++ SAL A+ GY +IV LLL+ D+N G T L
Sbjct: 50 ETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA 109
Query: 143 ----HMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLYFIHE 197
H+ C V LL GA + +G TP+ L G R+V V+ I +
Sbjct: 110 VHGNHVKC--------VEALLARGADLT-TEADSGYTPMDLAVALGYRKVQQVIENHILK 160
Query: 198 IFK 200
+F+
Sbjct: 161 LFQ 163
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 124 LLDNGA----DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 179
LLD+ A D+ ++ G TALH+A ++ V+ LL GA + VD K+G++PL+H
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQET-VQLLLERGADIDAVDIKSGRSPLIH 156
Query: 180 A 180
A
Sbjct: 157 A 157
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
V + + V+ +E GA I+ + G S LI+A +V LLL +GA+VN + +G
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183
Query: 139 FTALHMACRFHDDDSIVRKLLRHGA 163
+ALH A +VR L+R GA
Sbjct: 184 SSALHSAS-GRGLLPLVRTLVRSGA 207
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 12/139 (8%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD--- 75
+A + P ++ L + A ++ ++N H A+ E ++ + LL D
Sbjct: 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA 144
Query: 76 ---------FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD 126
+ V +N V+ ++ GA +N SAL A+ +G +V L+
Sbjct: 145 VDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204
Query: 127 NGADVNFKSATGFTALHMA 145
+GAD + K+ T L +A
Sbjct: 205 SGADSSLKNCHNDTPLMVA 223
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNK----AAARIAHSALELEERK 64
V E + P+ IA+ D +I K L + GA I+ + + A A+ L +
Sbjct: 35 VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 65 AINDLLRLNL----DFLKNVRSNKYDEVKKNIEDG-ACINVSSERCGSALIYAAW----- 114
A DL + N + D VK +EDG I+ ++ +ALI A
Sbjct: 95 ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN 154
Query: 115 KGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
+ Y++IV LL++NGAD + K +G TA+ A +
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ 187
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ LI AA E +V+ L+ AD+N +G TALH A ++ ++ V LL H A +
Sbjct: 120 TPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEA-VNILLMHHANRD 178
Query: 167 VVDGKTGKTPL-LHAGKGAREVNTVLL 192
D K +TPL L A +G+ E + LL
Sbjct: 179 AQDDK-DETPLFLAAREGSYEASKALL 204
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 83 NKYDEVKKNIED----GACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
N D + I D GA +N + ++ G ++L AA + LLD GAD N + T
Sbjct: 24 NNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNT 83
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 186
G T LH A D + + LLR+ A G TPL+ A + A E
Sbjct: 84 GRTPLHAAVAA-DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIE 131
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 120 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
IVD L+ N +++ ++ G TALH C D+ ++ LLR A + + ++G+TPL
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCC-LTDNAECLKLLLRGKASIEIAN-ESGETPL 242
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
++ GA NV S + AA G+ + + +L+++GADVN +TG +H+A R
Sbjct: 61 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR 116
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
++ GA NV S + AA G+ + + +L+++GADVN +TG +H+A R
Sbjct: 63 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR 118
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
++ GA NV S + AA G+ + + +L+++GADVN TG +H+A +
Sbjct: 61 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 116
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
++ GA NV S + AA G+ + + +L+++GADVN TG +H+A +
Sbjct: 55 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 110
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 120 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 163
IVD L+ GA+VN + G+T LH A +D I L++HGA
Sbjct: 69 IVDFLITAGANVNSPDSHGWTPLHCAASC-NDTVICMALVQHGA 111
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 109 LIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 144
L +AA G EEIV LL+++GAD+ + + G T LH+
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 84 KYDEVKKN-IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTA 141
K+ EV + IE+GA + + + L AA G ++++LL G + VN++ G+T
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 142 LHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 175
L A D+ V + ++GA Y++VD K K
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 84 KYDEVKKN-IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTA 141
K+ EV + IE+GA + + + L AA G ++++LL G + VN++ G+T
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 142 LHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 175
L A D+ V + ++GA Y++VD K K
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 84 KYDEVKKN-IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTA 141
K+ EV + IE+GA + + + L AA G ++++LL G + VN++ G+T
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 142 LHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 175
L A D+ V + ++GA Y++VD K K
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 93 EDGACINVSSERCGSALIYAAWKG----YEEIVDLLLDNGADVNFKSATGFTALHMACRF 148
E GA +N +ALI+A E I LLLD+GADVN + G T L +A
Sbjct: 190 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 249
Query: 149 HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ R L + N D GKT LL A
Sbjct: 250 KHLGLVQRLLEQEHIEINDTD-SDGKTALLLA 280
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 36/191 (18%)
Query: 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
ED+ + A+Q D +V++L GA ++ + + + H+A+++ + LLR
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVN---FQEEEGGWTPLHNAVQMSREDIVELLLR 80
Query: 72 LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
D + KKN GA + I AA G +++ L L GADV
Sbjct: 81 HGADPVLR---------KKN---GA----------TPFILAAIAGSVKLLKLFLSKGADV 118
Query: 132 NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG---------KTGKTPLLHAG- 181
N GFTA M + ++ L + GA N+ K G T L+ A
Sbjct: 119 NECDFYGFTAF-MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177
Query: 182 KGAREVNTVLL 192
KG EV +LL
Sbjct: 178 KGHVEVLKILL 188
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 92 IEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
I GA ++ ++R G +AL AA + LL+ AD N + G T LH A D
Sbjct: 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-D 69
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 186
+ + L+R+ A G TPL+ A + A E
Sbjct: 70 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 105
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 120 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 179
I D + + N TG TALH+A R+ D+ ++LL A N+ D G+TP LH
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDA-AKRLLEASADANIQD-NMGRTP-LH 63
Query: 180 AGKGAREVNTVLLYFIHEIFKLMANNDTTILD 211
A A +F+++ N T LD
Sbjct: 64 AAVSADA---------QGVFQILIRNRATDLD 86
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ LI AA E +++ L+++ ADVN G +ALH A ++ LL++GA +
Sbjct: 94 TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKD 152
Query: 167 VVDGKTGKTPL-LHAGKGAREVNTVLL 192
+ + + +TPL L A +G+ E VLL
Sbjct: 153 MQNNRE-ETPLFLAAREGSYETAKVLL 178
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 93 EDGACINVSSERCGSALIYAAWKG----YEEIVDLLLDNGADVNFKSATGFTALHMACRF 148
E GA +N +ALI+A E I LLLD+GADVN + G T L +A
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229
Query: 149 HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ R L + N D GKT LL A
Sbjct: 230 KHLGLVQRLLEQEHIEINDTD-SDGKTALLLA 260
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 36/193 (18%)
Query: 10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDL 69
ED+ + A+Q D +V++L GA ++ + + + H+A+++ + L
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVN---FQEEEGGWTPLHNAVQMSREDIVELL 58
Query: 70 LRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA 129
LR D + KKN GA + + AA G +++ L L GA
Sbjct: 59 LRHGADPVLR---------KKN---GA----------TPFLLAAIAGSVKLLKLFLSKGA 96
Query: 130 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG---------KTGKTPLLHA 180
DVN GFTA M + ++ L + GA N+ K G T L+ A
Sbjct: 97 DVNECDFYGFTAF-MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 181 G-KGAREVNTVLL 192
KG EV +LL
Sbjct: 156 AEKGHVEVLKILL 168
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 53/138 (38%), Gaps = 21/138 (15%)
Query: 14 HKPIAIAIQIGDPQIVKELQNHGAQIDKE--IYSKNKAAARIAHSALELEERKAINDLL- 70
H P+ A G V L HGA + E + S AAR H + +N L+
Sbjct: 70 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHV-------ECVNSLIA 122
Query: 71 ----------RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEI 120
L + + VKK +E GA +N + S L A EE+
Sbjct: 123 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ-DSPLHAVARTASEEL 181
Query: 121 VDLLLDNGADVNFKSATG 138
LL+D GAD K+A G
Sbjct: 182 ACLLMDFGADTQAKNAEG 199
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
I G +N+ + S L A G+ V +LL +GA VN +A T L AC
Sbjct: 23 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 82
Query: 152 DSIVRKLLRHGA 163
D V LL+HGA
Sbjct: 83 DC-VNLLLQHGA 93
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
S + AA G++ + L+ G VN +A + LH AC S V+ LL+HGA N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEAC-LGGHLSCVKILLKHGAQVN 63
Query: 167 VVDGKTGKTPLLHA 180
V TPL +A
Sbjct: 64 GVTADW-HTPLFNA 76
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 120 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 179
I D + + N TG TALH+A R+ D+ ++LL A N+ D G+TP LH
Sbjct: 40 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDA-AKRLLEASADANIQD-NMGRTP-LH 96
Query: 180 AGKGAREVNTVLLYFIHEIFKLMANNDTTILD 211
A A +F+++ N T LD
Sbjct: 97 AAVSAD---------AQGVFQILIRNRATDLD 119
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 92 IEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
I GA ++ ++R G +AL AA + LL+ AD N + G T LH A D
Sbjct: 44 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-D 102
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 186
+ + L+R+ A G TPL+ A + A E
Sbjct: 103 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 138
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ LI AA E +++ L+++ ADVN G +ALH A ++ LL++GA +
Sbjct: 127 TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKD 185
Query: 167 VVDGKTGKTPL-LHAGKGAREVNTVLL 192
+ + + +TPL L A +G+ E VLL
Sbjct: 186 MQNNRE-ETPLFLAAREGSYETAKVLL 211
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 120 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 179
I D + + N TG TALH+A R+ D+ ++LL A N+ D G+TP LH
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDA-AKRLLEASADANIQD-NMGRTP-LH 95
Query: 180 AGKGAREVNTVLLYFIHEIFKLMANNDTTILD 211
A A +F+++ N T LD
Sbjct: 96 AAVSAD---------AQGVFQILIRNRATDLD 118
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 92 IEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
I GA ++ ++R G +AL AA + LL+ AD N + G T LH A D
Sbjct: 43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-D 101
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 186
+ + L+R+ A G TPL+ A + A E
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ LI AA E +++ L+++ ADVN G +ALH A + + LL++GA +
Sbjct: 126 TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKNGANKD 184
Query: 167 VVDGKTGKTPL-LHAGKGAREVNTVLL 192
+ + + +TPL L A +G+ E VLL
Sbjct: 185 MQNNRE-ETPLFLAAREGSYETAKVLL 210
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 92 IEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
I GA ++ ++R G +AL AA + LL+ AD N + G T LH A D
Sbjct: 43 IYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-D 101
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 186
+ + L+R+ A G TPL+ A + A E
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 120 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 179
I D + + N TG TALH+A + D+ ++LL A N+ D G+TP LH
Sbjct: 39 ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDA-AKRLLEASADANIQD-NMGRTP-LH 95
Query: 180 AGKGAREVNTVLLYFIHEIFKLMANNDTTILD 211
A A +F+++ N T LD
Sbjct: 96 AAVSAD---------AQGVFQILIRNRATDLD 118
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ LI AA E +++ L+++ ADVN G +ALH A + + LL++GA +
Sbjct: 126 TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKNGANKD 184
Query: 167 VVDGKTGKTPL-LHAGKGAREVNTVLL 192
+ + + +TPL L A +G+ E VLL
Sbjct: 185 MQNNRE-ETPLFLAAREGSYETAKVLL 210
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
I G +N+ + S L A G+ V +LL +GA VN +A T L AC
Sbjct: 79 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 138
Query: 152 DSIVRKLLRHGA 163
D V LL+HGA
Sbjct: 139 D-CVNLLLQHGA 149
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
S + AA G++ + L+ G VN +A + LH AC S V+ LL+HGA N
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEAC-LGGHLSCVKILLKHGAQVN 119
Query: 167 VVDGKTGKTPLLHA 180
V TPL +A
Sbjct: 120 GVTADW-HTPLFNA 132
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 52/138 (37%), Gaps = 21/138 (15%)
Query: 14 HKPIAIAIQIGDPQIVKELQNHGAQIDKE--IYSKNKAAARIAHSALELEERKAINDLL- 70
H P+ A G V L HGA + E + S AAR H + +N L+
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHV-------ECVNSLIA 178
Query: 71 ----------RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEI 120
L + + VKK +E GA +N + S L EE+
Sbjct: 179 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ-DSPLHAVVRTASEEL 237
Query: 121 VDLLLDNGADVNFKSATG 138
LL+D GAD K+A G
Sbjct: 238 ACLLMDFGADTQAKNAEG 255
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 112 AAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF 148
AA KG + V L++ G ++ G TALH+AC+F
Sbjct: 27 AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ NIE +N ++ +AL AAWKGY +IV LLL GA + ++
Sbjct: 127 TQPNIE----LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 98 INVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR 156
IN + + G +AL+ A G ++V LL ADVN + G TAL AC H I
Sbjct: 175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACE-HGHKEIAG 233
Query: 157 KLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVL 191
LL + + + G T L+ A G E+ ++L
Sbjct: 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD-NGADVNFKSATG 138
V + D VK + A +NV + +AL+ A G++EI LLL D++ G
Sbjct: 191 VSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG 250
Query: 139 FTALHMA 145
TAL +A
Sbjct: 251 STALMVA 257
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 120 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
+VD ++ NG ++ K+A G TALH A ++ D + + LL+ A V+ + G+T L
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL-KLLLKGRALVGTVN-EAGETAL 244
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 103 ERCGSALIY-AAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 161
+R G A+I+ AA G+ + + LL+N ADVN + G LH+A + +V L++H
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAK-EGHLRVVEFLVKH 125
Query: 162 GA 163
A
Sbjct: 126 TA 127
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 116 GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 175
G EI LL GA+ + K TGF +H A R D++ + LL + A N+ D + G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLENQADVNIEDNE-GNL 105
Query: 176 PLLHAGK 182
PL A K
Sbjct: 106 PLHLAAK 112
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 120 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
+VD ++ NG ++ K+A G TALH A ++ D + + LL+ A V+ + G+T L
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL-KLLLKGRALVGTVN-EAGETAL 263
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 46 KNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERC 105
+ + RIAH R N L L L + ++D V++ I + ++ ++
Sbjct: 20 RKTGSERIAHGM-----RVKFNPLALL----LDSSLEGEFDLVQRIIYEVDDPSLPNDEG 70
Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 163
+AL A G+ EIV L+ G +VN + G+T LH A ++ + + L+ GA
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQVCKFLVESGA 127
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 163
+AL A G+ EIV L+ G +VN + G+T LH A ++ + + L+ GA
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQVCKFLVESGA 127
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 44 YSKNKAAARIAHSALELEERK--AINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVS 101
++ + A A S L LE+R A+++ R L F+ + S+K V+ E GA ++
Sbjct: 50 WTAARKADEQALSQL-LEDRDVDAVDENGRTALLFVAGLGSDKC--VRLLAEAGADLDHR 106
Query: 102 SERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
R G +AL AA E+V+ L++ GAD+ + G TAL +A
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 44 YSKNKAAARIAHSALELEERK--AINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVS 101
++ + A A S L LE+R A+++ R L F+ + S+K V+ E GA ++
Sbjct: 49 WTAARKADEQALSQL-LEDRDVDAVDENGRTALLFVAGLGSDKC--VRLLAEAGADLDHR 105
Query: 102 SERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
R G +AL AA E+V+ L++ GAD+ + G TAL +A
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 116 GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 175
G EI LL GA+ + K TGF +H A R D++ + LL A N+ D + G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTL-QTLLEFQADVNIEDNE-GNL 105
Query: 176 PLLHAGK 182
PL A K
Sbjct: 106 PLHLAAK 112
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 120 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 179
I D + + N TG TALH+A R+ D+ ++LL A + D G+TP LH
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDA-AKRLLEASADAXIQD-NMGRTP-LH 60
Query: 180 AGKGAREVNTVLLYFIHEIFKLMANNDTTILD 211
A A +F+++ N T LD
Sbjct: 61 AAVSADAQG---------VFQILLRNRATDLD 83
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ LI AA E +++ L+++ ADVN G +ALH A ++ LL++GA +
Sbjct: 91 TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKD 149
Query: 167 VVDGKTGKTPL-LHAGKGAREVNTVLL 192
+ + K +TPL L A +G+ E VLL
Sbjct: 150 MQNNKE-ETPLFLAAREGSYETAKVLL 175
>pdb|1YQY|A Chain A, Structure Of B. Anthrax Lethal Factor In Complex With A
Hydroxamate Inhibitor
Length = 523
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 28/185 (15%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
I ++I D QI+K+ + +ID ++ K+K +I + L + + N L L + K
Sbjct: 268 IGLEIKDVQIIKQSEKEYIRIDAKVVPKSKIDTKIQEAQLNINQE--WNKALGLP-KYTK 324
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKG------YEEIVDLLLDNGADVN 132
+ N ++ NI + A LI WK +++ + L+D
Sbjct: 325 LITFNVHNRYASNIVESAY-----------LILNEWKNNIQSDLIKKVTNYLVDGNGRFV 373
Query: 133 FKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 192
F T T ++A ++ D I ++ G Y ++ LLH E+
Sbjct: 374 F---TDITLPNIAEQYTHQDEIYEQVHSKGLYV-----PESRSILLHGPSKGVELRNDSE 425
Query: 193 YFIHE 197
FIHE
Sbjct: 426 GFIHE 430
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF 148
+AL AA G V+ L GA V G TALH+ACR
Sbjct: 47 TALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
G T LH+A H D +VR L GA N + G+TPL
Sbjct: 158 GHTPLHVAV-IHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF 148
+AL AA G V+ L GA V G TALH+ACR
Sbjct: 47 TALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
G T LH+A H D +VR L GA N + G+TPL
Sbjct: 158 GHTPLHVAV-IHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
>pdb|4DV8|A Chain A, Anthrax Lethal Factor Metalloproteinase In Complex With
The Hydroxamic Acid Based Small Molecule Pt8421
Length = 526
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 28/185 (15%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
I ++I D QI+K+ + +ID ++ K+K +I + L + + N L L + K
Sbjct: 275 IGLEIKDVQIIKQSEKEYIRIDAKVVPKSKIDTKIQEAQLNINQE--WNKALGLP-KYTK 331
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKG------YEEIVDLLLDNGADVN 132
+ N ++ NI + A LI WK +++ + L+D
Sbjct: 332 LITFNVHNRYASNIVESAY-----------LILNEWKNNIQSDLIKKVTNYLVDGNGRFV 380
Query: 133 FKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 192
F T T ++A ++ D I ++ G Y ++ LLH E+
Sbjct: 381 F---TDITLPNIAEQYTHQDEIYEQVHSKGLYV-----PESRSILLHGPSKGVELRNDSE 432
Query: 193 YFIHE 197
FIHE
Sbjct: 433 GFIHE 437
>pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
pdb|1PWP|A Chain A, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWP|B Chain B, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWQ|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWQ|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWV|A Chain A, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1PWV|B Chain B, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1ZXV|A Chain A, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid.
pdb|1ZXV|B Chain B, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid
Length = 776
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
I ++I D QI+K+ + +ID ++ K+K +I + L + + N L L + K
Sbjct: 525 IGLEIKDVQIIKQSEKEYIRIDAKVVPKSKIDTKIQEAQLNINQE--WNKALGLP-KYTK 581
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKG------YEEIVDLLLDNGADVN 132
+ N ++ NI + A LI WK +++ + L+D
Sbjct: 582 LITFNVHNRYASNIVESAY-----------LILNEWKNNIQSDLIKKVTNYLVDGNGRFV 630
Query: 133 FKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 192
F T T ++A ++ D I ++ G Y ++ LLH E+
Sbjct: 631 F---TDITLPNIAEQYTHQDEIYEQVHSKGLYV-----PESRSILLHGPSKGVELRNDSE 682
Query: 193 YFIHEI 198
FIHE
Sbjct: 683 GFIHEF 688
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 103 ERCGSALIY-AAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 161
+R G+A+I+ AA G+ + + LL+ ADVN + G LH+A + +V L++H
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK-EGHLRVVEFLVKH 125
Query: 162 GA 163
A
Sbjct: 126 TA 127
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 116 GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 175
G EI LL GA+ + K TGF +H A R D++ + LL A N+ D + G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLEFQADVNIEDNE-GNL 105
Query: 176 PLLHAGK 182
PL A K
Sbjct: 106 PLHLAAK 112
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 198 IFKLMANNDTTILDRLDEMK-SLILEGTKEFGPGDYNNFS 236
++KL++ D+ I R+ E++ SLI EG+ + GD+N F+
Sbjct: 1 MYKLVSFRDSEIFGRVAEVEFSLIREGSYAYLLGDFNAFN 40
>pdb|3QV0|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Mam33
Length = 227
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYF 194
SAT + ++ A + I R+L+ HG ++ +D + ++ L A +R VN L F
Sbjct: 145 SATPYPSVDAALNQSAEAEITRELVYHGPPFSNLDEELQES--LEAYLESRGVNEELASF 202
Query: 195 IHEIFKLMANNDTTILDRLDEMKSLI 220
I + NN+ + L++MK
Sbjct: 203 ISAYSEFKENNE--YISWLEKMKKFF 226
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 116 GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 175
G EI LL GA+ + K TGF +H A R D++ + LL A N+ D + G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLEFQADVNIEDNE-GNL 105
Query: 176 PLLHAGK 182
PL A K
Sbjct: 106 PLHLAAK 112
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ LI AA E +++ L+++ ADVN G +ALH A ++ LL++GA +
Sbjct: 17 TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKD 75
Query: 167 VVDGKTGKTPL-LHAGKGAREVNTVLL 192
+ + K +TPL L A +G+ E VLL
Sbjct: 76 MQNNKE-ETPLFLAAREGSYETAKVLL 101
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH 149
SAL A K + V LL++NGADV+ ++ F H F+
Sbjct: 105 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFY 147
>pdb|1PWU|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWU|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWW|A Chain A, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc.
pdb|1PWW|B Chain B, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc
Length = 776
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 28/184 (15%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
I ++I D QI+K+ + +ID ++ K+K +I + L + + N L L + K
Sbjct: 525 IGLEIKDVQIIKQSEKEYIRIDAKVVPKSKIDTKIQEAQLNINQE--WNKALGLP-KYTK 581
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKG------YEEIVDLLLDNGADVN 132
+ N ++ NI + A LI WK +++ + L+D
Sbjct: 582 LITFNVHNRYASNIVESAY-----------LILNEWKNNIQSDLIKKVTNYLVDGNGRFV 630
Query: 133 FKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 192
F T T ++A ++ D I ++ G Y ++ LLH E+
Sbjct: 631 F---TDITLPNIAEQYTHQDEIYEQVHSKGLYV-----PESRSILLHGPSKGVELRNDSE 682
Query: 193 YFIH 196
FIH
Sbjct: 683 GFIH 686
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH 149
SAL A K + V LL++NGADV+ ++ F H F+
Sbjct: 92 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFY 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,265,736
Number of Sequences: 62578
Number of extensions: 343890
Number of successful extensions: 1384
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 279
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)