Query psy8012
Match_columns 271
No_of_seqs 175 out of 3648
Neff 10.6
Searched_HMMs 29240
Date Sat Aug 17 00:33:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 1.1E-42 3.6E-47 278.2 16.6 215 8-269 5-246 (253)
2 1n11_A Ankyrin; clathrin, BAND 100.0 2E-41 6.9E-46 291.1 24.5 242 9-269 142-400 (437)
3 1wdy_A 2-5A-dependent ribonucl 100.0 3.5E-41 1.2E-45 273.1 21.5 238 12-268 4-275 (285)
4 1k1a_A B-cell lymphoma 3-encod 100.0 5.5E-42 1.9E-46 271.7 15.4 215 8-269 4-239 (241)
5 3b7b_A Euchromatic histone-lys 100.0 4.7E-41 1.6E-45 265.8 20.7 208 8-262 6-226 (237)
6 1n11_A Ankyrin; clathrin, BAND 100.0 7.3E-41 2.5E-45 287.7 22.9 253 9-267 10-299 (437)
7 3ljn_A Hypothetical protein; a 100.0 2.7E-41 9.2E-46 283.8 15.9 214 8-268 15-266 (364)
8 2xai_A ASB-9, ankyrin repeat a 100.0 3.3E-40 1.1E-44 264.9 19.1 185 12-204 2-198 (261)
9 3d9h_A CDNA FLJ77766, highly s 100.0 4E-40 1.4E-44 267.7 19.3 210 8-268 54-275 (285)
10 3eu9_A Huntingtin-interacting 100.0 1.5E-39 5.1E-44 257.2 21.3 218 7-269 3-233 (240)
11 1oy3_D Transcription factor in 100.0 4.1E-40 1.4E-44 266.7 18.1 207 7-260 3-272 (282)
12 3aji_A 26S proteasome non-ATPa 100.0 9.8E-40 3.3E-44 257.3 18.7 212 10-268 3-227 (231)
13 4g8k_A 2-5A-dependent ribonucl 100.0 2.4E-39 8.2E-44 269.2 20.6 238 11-267 23-294 (337)
14 2fo1_E LIN-12 protein; beta-ba 100.0 5.6E-40 1.9E-44 276.6 15.0 216 6-268 118-368 (373)
15 2f8y_A Notch homolog 1, transl 100.0 3.9E-38 1.3E-42 246.8 23.2 198 2-268 14-213 (223)
16 4b93_B Ankyrin repeat domain-c 100.0 4.7E-40 1.6E-44 264.9 11.8 212 8-268 6-238 (269)
17 2dzn_A Probable 26S proteasome 100.0 5.5E-39 1.9E-43 252.4 17.3 205 13-267 2-226 (228)
18 1wdy_A 2-5A-dependent ribonucl 100.0 6.2E-37 2.1E-41 248.1 23.6 218 2-225 28-278 (285)
19 3utm_A Tankyrase-1; tankyrase, 100.0 2.2E-37 7.6E-42 258.1 21.4 227 9-257 54-350 (351)
20 4g8k_A 2-5A-dependent ribonucl 100.0 8.6E-37 3E-41 253.8 24.3 243 2-268 48-323 (337)
21 3utm_A Tankyrase-1; tankyrase, 100.0 1.6E-37 5.6E-42 258.8 19.9 236 11-268 22-331 (351)
22 2rfa_A Transient receptor pote 100.0 6.5E-37 2.2E-41 241.3 20.6 199 12-268 2-219 (232)
23 1s70_B 130 kDa myosin-binding 100.0 1.5E-38 5.2E-43 259.9 11.6 215 7-268 34-287 (299)
24 3kea_A K1L; tropism, ANK repea 100.0 2.4E-38 8.3E-43 257.2 11.6 208 7-225 25-246 (285)
25 2xai_A ASB-9, ankyrin repeat a 100.0 4.2E-37 1.4E-41 246.8 18.3 215 8-264 31-256 (261)
26 3d9h_A CDNA FLJ77766, highly s 100.0 1E-36 3.6E-41 247.6 18.9 210 10-268 12-244 (285)
27 1yyh_A HN1;, notch 1, ankyrin 100.0 2.5E-36 8.7E-41 241.2 20.1 190 2-197 46-248 (253)
28 4gpm_A Engineered protein OR26 100.0 4.1E-36 1.4E-40 225.0 18.6 156 15-199 6-163 (169)
29 3aji_A 26S proteasome non-ATPa 100.0 3.3E-36 1.1E-40 237.0 18.8 185 7-197 34-230 (231)
30 3ljn_A Hypothetical protein; a 100.0 1.5E-36 5.3E-41 254.8 16.7 186 8-201 48-273 (364)
31 2etb_A Transient receptor pote 100.0 2.8E-36 9.5E-41 241.3 17.2 206 12-268 1-243 (256)
32 3hra_A Ankyrin repeat family p 100.0 1.1E-35 3.9E-40 229.1 20.0 189 10-267 2-199 (201)
33 1ikn_D Protein (I-kappa-B-alph 100.0 1E-37 3.5E-42 246.6 6.1 186 8-199 3-211 (236)
34 2pnn_A Transient receptor pote 100.0 2.1E-35 7.1E-40 238.4 16.3 210 7-268 7-255 (273)
35 1k1a_A B-cell lymphoma 3-encod 100.0 9.6E-35 3.3E-39 230.0 16.3 183 8-196 41-240 (241)
36 3jxi_A Vanilloid receptor-rela 100.0 1.1E-34 3.9E-39 232.4 16.0 208 10-268 2-247 (260)
37 3kea_A K1L; tropism, ANK repea 100.0 1.6E-34 5.4E-39 234.7 15.8 219 21-267 7-242 (285)
38 4b93_B Ankyrin repeat domain-c 100.0 2E-35 6.7E-40 237.9 10.1 176 8-191 47-235 (269)
39 2fo1_E LIN-12 protein; beta-ba 100.0 6.2E-34 2.1E-38 239.7 19.1 183 9-197 162-371 (373)
40 4gpm_A Engineered protein OR26 100.0 6.4E-34 2.2E-38 213.0 17.0 148 77-267 8-157 (169)
41 1oy3_D Transcription factor in 100.0 2.3E-34 7.8E-39 232.9 15.8 184 39-268 2-247 (282)
42 3b7b_A Euchromatic histone-lys 100.0 1.5E-33 5E-38 222.7 19.0 185 37-268 2-199 (237)
43 2dzn_A Probable 26S proteasome 100.0 2.2E-33 7.5E-38 220.4 17.9 181 5-194 28-227 (228)
44 2rfm_A Putative ankyrin repeat 100.0 1.3E-32 4.3E-37 210.7 17.0 161 8-196 30-191 (192)
45 3eu9_A Huntingtin-interacting 100.0 3E-32 1E-36 215.2 19.4 185 8-198 37-236 (240)
46 3v30_A DNA-binding protein rfx 100.0 2.7E-32 9.1E-37 205.2 17.4 159 13-199 2-162 (172)
47 3v31_A Ankyrin repeat family A 100.0 4.1E-32 1.4E-36 203.2 18.0 160 12-199 2-162 (167)
48 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.5E-32 1.2E-36 204.0 17.7 163 5-195 6-169 (169)
49 4hbd_A KN motif and ankyrin re 100.0 3.4E-33 1.2E-37 225.8 11.7 189 13-270 76-274 (276)
50 1sw6_A Regulatory protein SWI6 100.0 2.4E-33 8.3E-38 232.0 11.0 175 5-257 123-327 (327)
51 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.5E-32 1.2E-36 202.4 15.8 157 11-197 3-162 (162)
52 1sw6_A Regulatory protein SWI6 100.0 3.6E-34 1.2E-38 237.0 4.8 227 11-268 21-305 (327)
53 3hra_A Ankyrin repeat family p 100.0 3.1E-31 1.1E-35 204.2 19.1 161 8-195 34-201 (201)
54 1s70_B 130 kDa myosin-binding 100.0 6.6E-32 2.3E-36 220.5 15.1 204 18-268 3-254 (299)
55 1ikn_D Protein (I-kappa-B-alph 100.0 3.3E-33 1.1E-37 220.8 6.2 181 41-267 3-205 (236)
56 2rfa_A Transient receptor pote 100.0 5.7E-31 1.9E-35 207.3 18.8 164 9-200 33-225 (232)
57 2vge_A RELA-associated inhibit 100.0 6.2E-35 2.1E-39 229.5 -5.5 157 95-263 44-205 (229)
58 2etb_A Transient receptor pote 100.0 1.3E-31 4.6E-36 214.1 13.6 166 8-201 38-250 (256)
59 2rfm_A Putative ankyrin repeat 100.0 2.8E-31 9.5E-36 203.2 14.8 162 39-269 28-190 (192)
60 2f8y_A Notch homolog 1, transl 100.0 2.3E-30 7.9E-35 202.5 19.5 163 8-198 53-217 (223)
61 3f6q_A Integrin-linked protein 100.0 5.9E-31 2E-35 199.1 14.7 163 10-200 2-166 (179)
62 3twr_A Tankyrase-2; ankyrin re 100.0 5.6E-31 1.9E-35 196.6 14.3 160 9-196 4-164 (165)
63 4hbd_A KN motif and ankyrin re 100.0 1.6E-30 5.4E-35 210.2 18.0 160 8-195 106-273 (276)
64 1awc_B Protein (GA binding pro 100.0 1.5E-30 5E-35 191.9 16.3 150 13-191 2-152 (153)
65 3v31_A Ankyrin repeat family A 100.0 2.7E-30 9.4E-35 193.2 16.7 149 77-268 7-157 (167)
66 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.2E-30 1.1E-34 193.3 16.5 149 77-268 18-168 (169)
67 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.7E-31 6E-36 211.4 9.0 165 10-203 2-170 (239)
68 1bd8_A P19INK4D CDK4/6 inhibit 100.0 6.8E-30 2.3E-34 188.9 16.8 151 13-194 2-155 (156)
69 1awc_B Protein (GA binding pro 100.0 4.5E-30 1.6E-34 189.3 15.5 146 77-266 6-153 (153)
70 2pnn_A Transient receptor pote 100.0 1.6E-30 5.5E-35 209.7 14.2 164 8-199 49-261 (273)
71 3jxi_A Vanilloid receptor-rela 100.0 2.4E-30 8.3E-35 207.1 14.0 162 10-199 43-252 (260)
72 1ihb_A P18-INK4C(INK6), cyclin 100.0 5.4E-30 1.8E-34 190.6 14.3 149 77-268 9-159 (162)
73 3v30_A DNA-binding protein rfx 100.0 3E-29 1E-33 188.4 16.0 149 77-268 6-157 (172)
74 3twr_A Tankyrase-2; ankyrin re 100.0 1.2E-29 4.1E-34 189.4 11.9 158 43-269 5-163 (165)
75 3f6q_A Integrin-linked protein 100.0 4.9E-29 1.7E-33 188.6 13.1 156 45-268 4-160 (179)
76 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.1E-28 3.7E-33 182.4 14.6 146 77-267 6-154 (156)
77 2aja_A Ankyrin repeat family p 100.0 8.8E-31 3E-35 219.4 2.0 234 15-269 67-342 (376)
78 1bi7_B P16INK4A, MTS1, multipl 100.0 2.1E-28 7.1E-33 181.0 11.3 143 8-180 7-151 (156)
79 1d9s_A Cyclin-dependent kinase 100.0 6.4E-28 2.2E-32 174.2 13.5 135 2-164 1-136 (136)
80 3t8k_A Uncharacterized protein 99.9 7.6E-28 2.6E-32 182.8 11.0 161 13-199 6-181 (186)
81 1d9s_A Cyclin-dependent kinase 99.9 2.4E-27 8.1E-32 171.2 10.7 133 36-197 2-136 (136)
82 3t8k_A Uncharacterized protein 99.9 8.7E-28 3E-32 182.5 8.2 147 77-268 10-176 (186)
83 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.6E-27 8.8E-32 187.3 10.7 155 44-268 3-161 (239)
84 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.2E-26 1.8E-30 161.5 14.9 126 12-164 1-126 (126)
85 2jab_A H10-2-G3; HER2, darpin, 99.9 2.6E-26 8.9E-31 165.7 13.2 130 6-162 7-136 (136)
86 1bi7_B P16INK4A, MTS1, multipl 99.9 1E-26 3.5E-31 171.9 9.5 131 40-199 6-138 (156)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 4E-26 1.4E-30 164.8 11.9 123 102-267 11-134 (136)
88 3c5r_A BARD-1, BRCA1-associate 99.9 2.9E-27 9.8E-32 171.0 5.9 131 95-269 1-132 (137)
89 2vge_A RELA-associated inhibit 99.9 6.9E-27 2.4E-31 183.6 8.1 160 29-197 1-178 (229)
90 3c5r_A BARD-1, BRCA1-associate 99.9 5E-26 1.7E-30 164.4 8.0 128 6-160 3-130 (137)
91 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-24 4.1E-29 154.5 14.3 125 45-197 1-126 (126)
92 3deo_A Signal recognition part 99.9 2.5E-26 8.4E-31 174.3 4.6 131 77-268 48-181 (183)
93 2aja_A Ankyrin repeat family p 99.9 5.4E-27 1.9E-31 196.4 -2.5 211 23-261 44-269 (376)
94 3aaa_C Myotrophin, protein V-1 99.9 1.7E-24 5.8E-29 153.4 10.7 111 102-255 4-115 (123)
95 3ui2_A Signal recognition part 99.9 1.4E-24 4.9E-29 172.1 10.7 142 10-197 42-185 (244)
96 3deo_A Signal recognition part 99.9 8.5E-25 2.9E-29 165.8 8.6 139 10-194 41-181 (183)
97 2b0o_E UPLC1; arfgap, structur 99.9 3E-24 1E-28 175.2 12.1 121 75-197 153-284 (301)
98 3ui2_A Signal recognition part 99.9 5.1E-24 1.7E-28 168.9 12.8 131 77-268 49-182 (244)
99 3ehr_A Osteoclast-stimulating 99.9 1.5E-24 5.2E-29 169.4 7.8 101 96-198 97-199 (222)
100 3aaa_C Myotrophin, protein V-1 99.9 7.7E-24 2.6E-28 150.0 9.5 110 10-145 4-113 (123)
101 2b0o_E UPLC1; arfgap, structur 99.9 1.2E-23 4.3E-28 171.5 11.8 140 13-184 151-298 (301)
102 1dcq_A PYK2-associated protein 99.9 4.2E-22 1.4E-26 160.7 17.0 183 9-198 62-264 (278)
103 3ehr_A Osteoclast-stimulating 99.9 4.7E-23 1.6E-27 161.0 10.0 155 10-169 22-203 (222)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2.7E-22 9.3E-27 134.8 11.2 92 104-197 1-93 (93)
105 3jue_A Arfgap with coiled-coil 99.9 2.3E-22 8E-27 167.8 12.1 141 12-180 198-344 (368)
106 3lvq_E ARF-GAP with SH3 domain 99.9 6.9E-22 2.4E-26 172.1 14.3 131 14-169 133-270 (497)
107 3lvq_E ARF-GAP with SH3 domain 99.9 7.5E-22 2.5E-26 171.9 13.1 123 77-201 136-269 (497)
108 3jue_A Arfgap with coiled-coil 99.9 2.9E-21 9.9E-26 161.2 14.6 121 75-197 201-326 (368)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.9 3.8E-21 1.3E-25 129.1 11.6 93 12-130 1-93 (93)
110 2l6b_A NR1C; ankyrin, consensu 99.9 1E-21 3.6E-26 137.2 9.0 101 100-202 4-105 (115)
111 1dcq_A PYK2-associated protein 99.9 8.9E-21 3E-25 152.9 14.2 125 14-165 131-264 (278)
112 2l6b_A NR1C; ankyrin, consensu 99.9 1.5E-21 5.2E-26 136.4 8.4 109 7-141 3-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 9.3E-19 3.2E-23 121.2 9.9 91 99-191 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 8.9E-18 3E-22 116.2 9.3 92 7-124 18-109 (110)
115 1gp8_A Protein (scaffolding pr 54.5 10 0.00034 19.6 2.2 18 17-34 17-34 (40)
116 3zrh_A Ubiquitin thioesterase 33.1 76 0.0026 26.4 5.3 52 18-73 27-92 (454)
117 4g26_A Pentatricopeptide repea 22.6 3.5E+02 0.012 22.9 8.5 130 17-158 33-197 (501)
118 3mkq_B Coatomer subunit alpha; 20.1 2.5E+02 0.0085 20.2 7.6 131 13-164 8-144 (177)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.1e-42 Score=278.21 Aligned_cols=215 Identities=24% Similarity=0.256 Sum_probs=168.7
Q ss_pred CCCCCCCChHHHHHHhC-------------CHHHHHHHHHCCCCCCc-hhhcccchHHHHHHHHHHHHhHHHHHHHHHcC
Q psy8012 8 YVPYEDHKPIAIAIQIG-------------DPQIVKELQNHGAQIDK-EIYSKNKAAARIAHSALELEERKAINDLLRLN 73 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g-------------~~~~~~~Ll~~g~~~~~-~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g 73 (271)
..|.+|.||||+|+..| +.+++++|++.|++++. .+..|.|| ||+|+..|+.+++++|+++|
T Consensus 5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~g 80 (253)
T 1yyh_A 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA----LHLAARYSRSDAAKRLLEAS 80 (253)
T ss_dssp -----------------------------------------------CCCTTSCCH----HHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcH----HHHHHHcCCHHHHHHHHHcC
Confidence 35788999999999987 89999999999999865 47899999 99999999999999999998
Q ss_pred cHH----------HHHHHhcChHH-HHHHHhcCC-CCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcH
Q psy8012 74 LDF----------LKNVRSNKYDE-VKKNIEDGA-CINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTA 141 (271)
Q Consensus 74 ~~~----------l~~a~~~~~~~-~~~ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~ 141 (271)
+++ ||+|+..++.+ +++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||
T Consensus 81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~ 160 (253)
T 1yyh_A 81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 160 (253)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBH
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 765 99999999999 999999987 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHH
Q psy8012 142 LHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLI 220 (271)
Q Consensus 142 l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (271)
||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++
T Consensus 161 L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--------------------- 217 (253)
T 1yyh_A 161 LHWAAAV-NNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRD--------------------- 217 (253)
T ss_dssp HHHHHHH-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------------------
T ss_pred HHHHHHc-CCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCcc---------------------
Confidence 9999998 999999999999999999998 899999999 9999999999999998854
Q ss_pred hhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012 221 LEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA 269 (271)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~ 269 (271)
.+|..|.||+++|+++|+.+++++|.+.+
T Consensus 218 --------------------~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 218 --------------------ITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp --------------------CCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred --------------------ccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 78999999999999999999999998754
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-41 Score=291.15 Aligned_cols=242 Identities=21% Similarity=0.253 Sum_probs=212.0
Q ss_pred CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HH
Q psy8012 9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LK 78 (271)
Q Consensus 9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~ 78 (271)
.+..|.||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..++.+++++|+++|+++ |+
T Consensus 142 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 217 (437)
T 1n11_A 142 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP----LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 217 (437)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCH----HHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHH
Confidence 45678888888888888888888888888888888888888 88888888888888888876543 89
Q ss_pred HHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHH
Q psy8012 79 NVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157 (271)
Q Consensus 79 ~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~ 157 (271)
+|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++
T Consensus 218 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~ 296 (437)
T 1n11_A 218 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE-GHVPVADV 296 (437)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc-----cchHHHHHHHhhccCCCCCCC
Q psy8012 158 LLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGD 231 (271)
Q Consensus 158 Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~ 231 (271)
|+++|++++.++. .|.||||+| ..++.+++++|+++|++++..+..+.++.. ...+++++|+..|++
T Consensus 297 Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~------ 369 (437)
T 1n11_A 297 LIKHGVMVDATTR-MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS------ 369 (437)
T ss_dssp HHHHTCCTTCCCS-SCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred HHhCCccCCCCCC-CCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCC------
Confidence 9999999999998 899999999 999999999999999998866555544332 458899999999998
Q ss_pred CCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012 232 YNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA 269 (271)
Q Consensus 232 ~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~ 269 (271)
++.+|..|.||+++|++.|+.+++++|+...
T Consensus 370 -------~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~ 400 (437)
T 1n11_A 370 -------PNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400 (437)
T ss_dssp -------SCCCCSSSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred -------CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcc
Confidence 6789999999999999999999999998753
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.5e-41 Score=273.13 Aligned_cols=238 Identities=24% Similarity=0.253 Sum_probs=211.3
Q ss_pred CCCChHHHHHHhCCHHHHHHHHHCCCCCCch-hhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHH
Q psy8012 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKE-IYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNV 80 (271)
Q Consensus 12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~-~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a 80 (271)
+|.||||.|++.|+.+++++|++.|++++.. +..|.|| ||+|+..|+.+++++|+++|+++ ||+|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP----LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcH----HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 5789999999999999999999999999877 7779999 99999999999999999987654 9999
Q ss_pred HhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcccc----------CCCCCcHHHHHHHhC
Q psy8012 81 RSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK----------SATGFTALHMACRFH 149 (271)
Q Consensus 81 ~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~t~l~~a~~~~ 149 (271)
+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~- 158 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK- 158 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH-
T ss_pred HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc-
Confidence 9999999 99999999999999999999999999999999999999999988876 67789999999998
Q ss_pred CCHHHHHHHHhC-CCCccccCCCCCCCHHHHH-hcCC----chHHHHHHhchhhHHHHhhcCCcccc-----cchHHHHH
Q psy8012 150 DDDSIVRKLLRH-GAYYNVVDGKTGKTPLLHA-GKGA----REVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKS 218 (271)
Q Consensus 150 ~~~~~~~~Ll~~-g~~~~~~~~~~g~tpL~~A-~~~~----~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~~ 218 (271)
++.+++++|++. |++++..+. .|.||||+| ..++ .+++++|+++|++++..+..+.++.. ...+++++
T Consensus 159 ~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 237 (285)
T 1wdy_A 159 GHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR 237 (285)
T ss_dssp TCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 999999999987 999999998 899999999 8888 88999999999998766555444332 45888999
Q ss_pred HHh-hccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 219 LIL-EGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 219 l~~-~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
|+. .|++ ++.+|..|.||||+|++.|+.+++++|.+.
T Consensus 238 Ll~~~g~~-------------~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ 275 (285)
T 1wdy_A 238 LLEQEHIE-------------INDTDSDGKTALLLAVELKLKKIAELLCKR 275 (285)
T ss_dssp HHHSSSCC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCC-------------ccccCCCCCcHHHHHHHcCcHHHHHHHHHc
Confidence 998 7777 678999999999999999999999999874
No 4
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.5e-42 Score=271.70 Aligned_cols=215 Identities=22% Similarity=0.205 Sum_probs=196.1
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHH----CCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-------
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQN----HGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF------- 76 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~------- 76 (271)
..|.+|.||||+||+.|+.+++++|++ .|.+++..+..|.|| ||+|+..|+.+++++|+++|+++
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 79 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP----LHLAVITTLPSVVRLLVTAGASPMALDRHG 79 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH----HHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence 468899999999999999999999997 799999999999999 99999999999999999998765
Q ss_pred ---HHHHHhcChHH-HHHHHhcCC----CCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHH
Q psy8012 77 ---LKNVRSNKYDE-VKKNIEDGA----CINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACR 147 (271)
Q Consensus 77 ---l~~a~~~~~~~-~~~ll~~~~----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~ 147 (271)
||+|+..++.+ +++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+.
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence 99999999999 999999987 788889999999999999999999999999999999888 789999999999
Q ss_pred hCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCC
Q psy8012 148 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKE 226 (271)
Q Consensus 148 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (271)
. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++
T Consensus 160 ~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--------------------------- 210 (241)
T 1k1a_A 160 N-NSLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGLLPLVRTLVRSGADSS--------------------------- 210 (241)
T ss_dssp T-TCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCTT---------------------------
T ss_pred c-CCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCC---------------------------
Confidence 8 999999999999999999998 899999999 9999999999999998854
Q ss_pred CCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012 227 FGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA 269 (271)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~ 269 (271)
.+|..|.||+|+|+++|+.++++.|.+.+
T Consensus 211 --------------~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 211 --------------LKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp --------------CCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred --------------CcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 78999999999999999999999988765
No 5
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.7e-41 Score=265.83 Aligned_cols=208 Identities=22% Similarity=0.223 Sum_probs=195.5
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------H
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------L 77 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l 77 (271)
..+.+|.||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..|+.+++++|++.|+++ |
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 81 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTP----LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL 81 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCH----HHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence 457889999999999999999999999999999999999999 99999999999999999987654 9
Q ss_pred HHHHhcChHH-HHHHHhcC-CCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012 78 KNVRSNKYDE-VKKNIEDG-ACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV 155 (271)
Q Consensus 78 ~~a~~~~~~~-~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 155 (271)
++|+..++.+ +++|++.+ .+++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.. ++.+++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~ 160 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS-GCVDIA 160 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHC-CCHHHH
Confidence 9999999999 99999998 88999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012 156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN 234 (271)
Q Consensus 156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 234 (271)
++|++.|++++..+. .|.||||+| ..++.+++++|+++|++++
T Consensus 161 ~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----------------------------------- 204 (237)
T 3b7b_A 161 EILLAAKCDLHAVNI-HGDSPLHIAARENRYDCVVLFLSRDSDVT----------------------------------- 204 (237)
T ss_dssp HHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCTT-----------------------------------
T ss_pred HHHHHcCCCCCCcCC-CCCCHHHHHHHhCCHhHHHHHHHcCCCCC-----------------------------------
Confidence 999999999999998 899999999 9999999999999998854
Q ss_pred cccccccccCCCchHHHHHHHhCCCcHH
Q psy8012 235 FSLLKVTKNDAGETILDIAKKRGFPLLE 262 (271)
Q Consensus 235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~ 262 (271)
.+|..|.||||+|+++|+.+.+
T Consensus 205 ------~~d~~g~t~l~~A~~~~~~~~~ 226 (237)
T 3b7b_A 205 ------LKNKEGETPLQCASLNSQVWSA 226 (237)
T ss_dssp ------CCCTTSCCHHHHSCTTCHHHHH
T ss_pred ------ccCCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999988543
No 6
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.3e-41 Score=287.65 Aligned_cols=253 Identities=22% Similarity=0.195 Sum_probs=180.4
Q ss_pred CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HH
Q psy8012 9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LK 78 (271)
Q Consensus 9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~ 78 (271)
.+..|.||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..|+.+++++|+++|+++ |+
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 85 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP----LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH 85 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCH----HHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence 46678888888888888888888888888888888888888 88888888888888888877543 88
Q ss_pred HHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHH
Q psy8012 79 NVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157 (271)
Q Consensus 79 ~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~ 157 (271)
+|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.+++.+..+..|.||||+|+.. ++.+++++
T Consensus 86 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~ 164 (437)
T 1n11_A 86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY-GKVRVAEL 164 (437)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHc-CCHHHHHH
Confidence 888888888 8888888888888888888888888888888888888888887777777888888888887 88888888
Q ss_pred HHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc-----cchHHHHHHHhhccCCCCCCC
Q psy8012 158 LLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGD 231 (271)
Q Consensus 158 Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~ 231 (271)
|+++|++++..+. .|.||||+| ..++.+++++|+++|++++.....+.++.. ..++++++|+..|++......
T Consensus 165 Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 243 (437)
T 1n11_A 165 LLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 243 (437)
T ss_dssp HHHTTCCTTCCCS-SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 8888888887777 788888888 778888888888877766543333322211 346666777666665211100
Q ss_pred CCC--------------------cccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012 232 YNN--------------------FSLLKVTKNDAGETILDIAKKRGFPLLEELEKK 267 (271)
Q Consensus 232 ~~~--------------------~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~ 267 (271)
... ....++.+|..|.||||+|++.|+.+++++|-+
T Consensus 244 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 299 (437)
T 1n11_A 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299 (437)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 000 000134555566666666666666666655554
No 7
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.7e-41 Score=283.78 Aligned_cols=214 Identities=16% Similarity=0.131 Sum_probs=201.9
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc--------HHHHH
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL--------DFLKN 79 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~--------~~l~~ 79 (271)
..|.+|.||||+||..|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++|+ .+|++
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTA----LHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL 90 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcH----HHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH
Confidence 457789999999999999999999999999999999999999 999999999999999999876 34999
Q ss_pred HHhcChHH-HHHHHhc----CCCCcc-----------------CCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCccccC
Q psy8012 80 VRSNKYDE-VKKNIED----GACINV-----------------SSERCGSALIYAAWKG--YEEIVDLLLDNGADVNFKS 135 (271)
Q Consensus 80 a~~~~~~~-~~~ll~~----~~~~~~-----------------~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~ 135 (271)
|+..++.+ +++|++. +.+++. .+..|.||||+|+..| +.+++++|++.|++++..+
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d 170 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD 170 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence 99999999 9999998 888776 8889999999999999 9999999999999999999
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHhCCCC-----ccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCccc
Q psy8012 136 ATGFTALHMACRFHDDDSIVRKLLRHGAY-----YNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTI 209 (271)
Q Consensus 136 ~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~-----~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~ 209 (271)
..|+||||+|+.. ++.+++++|+++|++ ++..+. .|.||||+| ..++.+++++|+++|++++
T Consensus 171 ~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~~---------- 238 (364)
T 3ljn_A 171 KADETPLMRAMEF-RNREALDLMMDTVPSKSSLRLDYANK-QGNSHLHWAILINWEDVAMRFVEMGIDVN---------- 238 (364)
T ss_dssp TTSCCHHHHHHHT-TCHHHHHHHHHHCSCSSSCCTTCCCT-TCCCTTHHHHTTTCHHHHHHHHTTTCCTT----------
T ss_pred CCCCCHHHHHHHc-CCHHHHHHHHhcccccccccccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCC----------
Confidence 9999999999998 999999999999998 999998 899999999 9999999999999999854
Q ss_pred ccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 210 LDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
.+|..|.||||+|++.|+.+++++|.+.
T Consensus 239 -------------------------------~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 239 -------------------------------MEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp -------------------------------CCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred -------------------------------CCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 7899999999999999999999999875
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=264.90 Aligned_cols=185 Identities=22% Similarity=0.234 Sum_probs=168.3
Q ss_pred CCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHHH
Q psy8012 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNVR 81 (271)
Q Consensus 12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a~ 81 (271)
+|.||||+|++.|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++|+++ ||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSP----LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCH----HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH----HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 68999999999999999999999999999999999999 99999999999999999998765 99999
Q ss_pred hcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012 82 SNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 160 (271)
Q Consensus 82 ~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~ 160 (271)
..++.+ +++|++.|++++.. ..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~ 155 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN-QQRACVKKLLE 155 (261)
T ss_dssp HHTCHHHHHHHHHTTCCSSCS-CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT-TCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHh-CCHHHHHHHHH
Confidence 999999 99999999998854 4589999999999999999999999999999999999999999998 99999999999
Q ss_pred CCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhc
Q psy8012 161 HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMAN 204 (271)
Q Consensus 161 ~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~ 204 (271)
.|++++. +. .|.||||+| ..++.+++++|+++|++++..+..
T Consensus 156 ~g~~~~~-~~-~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~ 198 (261)
T 2xai_A 156 SGADVNQ-GK-GQDSPLHAVARTASEELACLLMDFGADTQAKNAE 198 (261)
T ss_dssp HTCCTTC-CB-TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred cCCCCCC-CC-CCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence 9999996 55 799999999 999999999999999997644333
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=267.74 Aligned_cols=210 Identities=22% Similarity=0.225 Sum_probs=187.0
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------H
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------L 77 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l 77 (271)
..+.+|.||||+|+..|+.+++++|++.|++++.++..|.|| ||+|+..|+.+++++|+++|+++ |
T Consensus 54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L 129 (285)
T 3d9h_A 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSP----LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL 129 (285)
T ss_dssp SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCH----HHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHH
T ss_pred CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH----HHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence 357889999999999999999999999999999999999999 99999999999999999987654 8
Q ss_pred HHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHH
Q psy8012 78 KNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR 156 (271)
Q Consensus 78 ~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 156 (271)
++|+..++.+ +++|++.|++++..+ .|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.++++
T Consensus 130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~v~ 207 (285)
T 3d9h_A 130 FNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN-QQRACVK 207 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT-TCHHHHH
T ss_pred HHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHH
Confidence 9999999888 999999988887654 488999999999999999999999999988888899999999988 9999999
Q ss_pred HHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCc
Q psy8012 157 KLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNF 235 (271)
Q Consensus 157 ~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 235 (271)
+|++.|++++. +. .|.||||+| ..++.+++++|+++|+++
T Consensus 208 ~Ll~~ga~~~~-~~-~g~t~L~~A~~~~~~~~v~~Ll~~gad~------------------------------------- 248 (285)
T 3d9h_A 208 KLLESGADVNQ-GK-GQDSPLHAVVRTASEELACLLMDFGADT------------------------------------- 248 (285)
T ss_dssp HHHHTTCCTTC-CB-TTBCHHHHHHHTTCHHHHHHHHHTTCCT-------------------------------------
T ss_pred HHHHCCCCCCC-CC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------------------------------
Confidence 99999998885 55 789999999 888899999999888874
Q ss_pred ccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 236 SLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 236 ~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
+.+|..|+||||+|+ ++.+++++|.+.
T Consensus 249 ----~~~d~~g~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 249 ----QAKNAEGKRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp ----TCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred ----CCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence 479999999999999 457899998875
No 10
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=257.22 Aligned_cols=218 Identities=22% Similarity=0.131 Sum_probs=201.7
Q ss_pred CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012 7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF---------- 76 (271)
Q Consensus 7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~---------- 76 (271)
+..|..|.|||+.|++.|+.+++++|++.|++++..+..|.|| ||+|+..|+.+++++|++.|+++
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t 78 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTL----LHWAAINNRIDLVKYYISKGAIVDQLGGDLNST 78 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCH----HHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC
Confidence 3457789999999999999999999999999999999999999 99999999999999999987643
Q ss_pred -HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHH
Q psy8012 77 -LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154 (271)
Q Consensus 77 -l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~ 154 (271)
|++|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+...++
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~ 158 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred hhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999977345889
Q ss_pred HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012 155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN 233 (271)
Q Consensus 155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 233 (271)
+++|++.|++++..+...|.||||+| ..++.+++++|+++|++++
T Consensus 159 ~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------------------------- 204 (240)
T 3eu9_A 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD---------------------------------- 204 (240)
T ss_dssp HHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT----------------------------------
T ss_pred HHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC----------------------------------
Confidence 99999999999998854799999999 9999999999999988854
Q ss_pred CcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012 234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA 269 (271)
Q Consensus 234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~ 269 (271)
.+|..|.||+++|++.|+.+++++|.+..
T Consensus 205 -------~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 205 -------AQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp -------CBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred -------CcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 78999999999999999999999998853
No 11
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.1e-40 Score=266.74 Aligned_cols=207 Identities=19% Similarity=0.134 Sum_probs=175.9
Q ss_pred CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCC---CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-------
Q psy8012 7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQ---IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF------- 76 (271)
Q Consensus 7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~---~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~------- 76 (271)
...|.+|.||||+||+.|+.+++++|+++|++ ++.++..|.|| ||+|+..|+.+++++|+++|+++
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g 78 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTA----LHLAAILGEASTVEKLYAAGAGVLVAERGG 78 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCSSCCCTTS
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence 35788999999999999999999999999988 77888999999 99999999999999999998765
Q ss_pred ---HHHHHhcChHH-HHHHHhcCCC-----------------------------------------------CccCCCCC
Q psy8012 77 ---LKNVRSNKYDE-VKKNIEDGAC-----------------------------------------------INVSSERC 105 (271)
Q Consensus 77 ---l~~a~~~~~~~-~~~ll~~~~~-----------------------------------------------~~~~~~~g 105 (271)
||+|+..++.+ +++|++.+++ ++..+..|
T Consensus 79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 99999999999 9999987755 56778899
Q ss_pred CcHHHHHHHhCCHHHHHHHHHCCCCccccCC-CCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcC
Q psy8012 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSA-TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKG 183 (271)
Q Consensus 106 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~ 183 (271)
.||||+|+..|+.+++++|++.|++++..+. .|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..+
T Consensus 159 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~ 236 (282)
T 1oy3_D 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA-QAASVLELLLKAGADPTARMY-GGRTPLGSALLRP 236 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHTSS
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHc-CCHHHHHHHHHcCCCCccccc-CCCCHHHHHHHcC
Confidence 9999999999999999999999999999875 499999999998 999999999999999999998 899999999 999
Q ss_pred CchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCc
Q psy8012 184 AREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPL 260 (271)
Q Consensus 184 ~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~ 260 (271)
+.+++++|+++|+++ +.+|..|.||+++|......+
T Consensus 237 ~~~~v~~Ll~~ga~~-----------------------------------------~~~~~~g~tpl~~a~~~~~~~ 272 (282)
T 1oy3_D 237 NPILARLLRAHGAPE-----------------------------------------PEDGGDKLSPCSSSGSDSDSD 272 (282)
T ss_dssp CHHHHHHHHHTTCCC-----------------------------------------CCCC-----------------
T ss_pred CcHHHHHHHHcCCCc-----------------------------------------CcCCCcccccccccCCccccc
Confidence 999999999999985 479999999999998776543
No 12
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=9.8e-40 Score=257.27 Aligned_cols=212 Identities=26% Similarity=0.210 Sum_probs=197.5
Q ss_pred CCCCCChHHHHHHhCCHHHHHHHHHCCC-CCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HH
Q psy8012 10 PYEDHKPIAIAIQIGDPQIVKELQNHGA-QIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LK 78 (271)
Q Consensus 10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~ 78 (271)
+..+.||||.|++.|+.+.+++|++.+. .++..+..|.|| ||+|+..|+.+++++|+++|+++ ||
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 78 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTA----LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 78 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH----HHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHH
Confidence 3468899999999999999999998765 466778899999 99999999999999999987654 99
Q ss_pred HHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHH
Q psy8012 79 NVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157 (271)
Q Consensus 79 ~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~ 157 (271)
+|+..++.+ +++|++.|++++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.. ++.+++++
T Consensus 79 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~ 157 (231)
T 3aji_A 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-GNLKMVHI 157 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-CCHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcc
Q psy8012 158 LLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFS 236 (271)
Q Consensus 158 Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (271)
|+++|++++.++. .|.||||+| ..++.+++++|+++|+++
T Consensus 158 Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------------------------------- 198 (231)
T 3aji_A 158 LLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQGASI-------------------------------------- 198 (231)
T ss_dssp HHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCS--------------------------------------
T ss_pred HHhcCCCccccCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCC--------------------------------------
Confidence 9999999999998 899999999 999999999999999884
Q ss_pred cccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 237 LLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 237 ~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
+.+|..|.||+++|++.++.+++++|.+.
T Consensus 199 ---~~~~~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 199 ---YIENKEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp ---CCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence 47899999999999999999999999874
No 13
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.4e-39 Score=269.19 Aligned_cols=238 Identities=23% Similarity=0.249 Sum_probs=187.7
Q ss_pred CCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhh-cccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHH
Q psy8012 11 YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIY-SKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKN 79 (271)
Q Consensus 11 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~ 79 (271)
.+|.|+||.||+.|++++|++||++|++++.++. .|.|| ||+|+..|+.+++++|+++|+++ ++.
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~Tp----Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP----LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCH----HHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHH
Confidence 3478899999999999999999999999998875 49999 99999999999999999999876 777
Q ss_pred HHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcccc----------CCCCCcHHHHHHHh
Q psy8012 80 VRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK----------SATGFTALHMACRF 148 (271)
Q Consensus 80 a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~t~l~~a~~~ 148 (271)
+...+... +..++..+++++..+..|.||+|+|+..|+.+++++|++.|++++.. +..|.||||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~ 178 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence 77777777 88888888888888888888888888888888888888888776643 33577888888887
Q ss_pred CCCHHHHHHHHh-CCCCccccCCCCCCCHHHHH-hcCC----chHHHHHHhchhhHHHHhhcCCcccc-----cchHHHH
Q psy8012 149 HDDDSIVRKLLR-HGAYYNVVDGKTGKTPLLHA-GKGA----REVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMK 217 (271)
Q Consensus 149 ~~~~~~~~~Ll~-~g~~~~~~~~~~g~tpL~~A-~~~~----~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~ 217 (271)
++.+++++|++ .|++++.++. .|.||++.+ ..+. .+++++|+++|++++..+..+.++.+ ...+.++
T Consensus 179 -g~~~~v~~LL~~~gad~n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~ 256 (337)
T 4g8k_A 179 -GHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 256 (337)
T ss_dssp -TCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred -CCHHHHHHHHhccCCCcCccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHH
Confidence 88888888884 5888888887 788888766 3322 34778888888887765554443322 3467777
Q ss_pred HHHhh-ccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012 218 SLILE-GTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK 267 (271)
Q Consensus 218 ~l~~~-~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~ 267 (271)
.|+.. |++ ++.+|..|+||||+|++.|+.+++++|-+
T Consensus 257 ~Ll~~~~~~-------------vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 294 (337)
T 4g8k_A 257 RLLEQEHIE-------------INDTDSDGKTALLLAVELKLKKIAELLCK 294 (337)
T ss_dssp HHHTSTTCC-------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHhcCCc-------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 77764 455 66788888888888888888888888765
No 14
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.6e-40 Score=276.64 Aligned_cols=216 Identities=19% Similarity=0.220 Sum_probs=179.3
Q ss_pred CCCCCCCCCChHHHHHHhCCHHHHHHHH--------HCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-
Q psy8012 6 DPYVPYEDHKPIAIAIQIGDPQIVKELQ--------NHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF- 76 (271)
Q Consensus 6 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll--------~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~- 76 (271)
+...+..|.||||+|+..|+.+++++|+ +.|++++.++..|.|| ||+|+..|+.+++++|+++|+++
T Consensus 118 n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~Tp----L~~A~~~g~~~iv~~Ll~~ga~~~ 193 (373)
T 2fo1_E 118 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP----LMLAVLARRRRLVAYLMKAGADPT 193 (373)
T ss_dssp TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCH----HHHHHHcChHHHHHHHHHCCCCCc
Confidence 3333467888888888888887777665 7788888888888888 88888888888888888887654
Q ss_pred ---------HHHHHhcChHH-HHHHHhcC---CCCccCCCCCCcHHHHHHHhC---CHHHHHHHHHCCCCccc-------
Q psy8012 77 ---------LKNVRSNKYDE-VKKNIEDG---ACINVSSERCGSALIYAAWKG---YEEIVDLLLDNGADVNF------- 133 (271)
Q Consensus 77 ---------l~~a~~~~~~~-~~~ll~~~---~~~~~~~~~g~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~------- 133 (271)
||+|+..++.+ +++|++.+ ++++..+..|.||||+|+..+ +.+++++|++.|++++.
T Consensus 194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~ 273 (373)
T 2fo1_E 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 273 (373)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC
Confidence 88888888888 88888877 678888888888888888887 78888888888888775
Q ss_pred -cCCCCCcHHHHHHHhCCCHHHHHHHHhCC-CCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc
Q psy8012 134 -KSATGFTALHMACRFHDDDSIVRKLLRHG-AYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL 210 (271)
Q Consensus 134 -~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ 210 (271)
.+..|+||||+|+.. ++.+++++|++.+ ++++.++. .|.||||+| ..|+.+++++|+++|+++
T Consensus 274 ~~d~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~n~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad~------------ 339 (373)
T 2fo1_E 274 SEKYKGRTALHYAAQV-SNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGASV------------ 339 (373)
T ss_dssp SSSCCCCCTHHHHHSS-CCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS------------
T ss_pred cccccCCCHHHHHHHh-CCHHHHHHHHHhcCCCccCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc------------
Confidence 456788888888887 8888888888765 88888887 788888888 888888888888888774
Q ss_pred cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 211 DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
+.+|..|.||||+|+++|+.+++++|.+.
T Consensus 340 -----------------------------~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 340 -----------------------------EAVDATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp -----------------------------SCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred -----------------------------cCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 47899999999999999999999999874
No 15
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.9e-38 Score=246.80 Aligned_cols=198 Identities=22% Similarity=0.243 Sum_probs=176.0
Q ss_pred CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHH
Q psy8012 2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVR 81 (271)
Q Consensus 2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~ 81 (271)
|.+.+...|.+|.||||+|++.|+.+++++|+++|++++.++..|.|| ||+|+..++.+++++|++.
T Consensus 14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~--------- 80 (223)
T 2f8y_A 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP----LHAAVSADAQGVFQILIRN--------- 80 (223)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHB---------
T ss_pred CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH----HHHHHHcCCHHHHHHHHHc---------
Confidence 556666678899999999999999999999999999999999999999 7777766666666666554
Q ss_pred hcChHHHHHHHhcCC-CCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012 82 SNKYDEVKKNIEDGA-CINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 160 (271)
Q Consensus 82 ~~~~~~~~~ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~ 160 (271)
+. +++..+..|.||||+|+..++.+++++|++.|++++..+..|+||||+|+.. ++.+++++|++
T Consensus 81 -------------~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~ 146 (223)
T 2f8y_A 81 -------------RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLK 146 (223)
T ss_dssp -------------TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT-TCHHHHHHHHH
T ss_pred -------------CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHc-CCHHHHHHHHH
Confidence 44 6778888999999999999999999999999999999999999999999998 99999999999
Q ss_pred CCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCccccc
Q psy8012 161 HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLK 239 (271)
Q Consensus 161 ~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (271)
+|++++.++. .|.||||+| ..++.+++++|+++|++++
T Consensus 147 ~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------------------------------- 185 (223)
T 2f8y_A 147 NGANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRD---------------------------------------- 185 (223)
T ss_dssp TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTT----------------------------------------
T ss_pred cCCCCCCcCC-CCcCHHHHHHHcCCHHHHHHHHHcCCCCc----------------------------------------
Confidence 9999999998 899999999 9999999999999988743
Q ss_pred ccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 240 VTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 240 ~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
.+|..|.||+++|+++|+.+++++|.+.
T Consensus 186 -~~~~~g~t~l~~A~~~~~~~i~~~L~~~ 213 (223)
T 2f8y_A 186 -ITDHMDRLPRDIAQERMHHDIVRLLDEY 213 (223)
T ss_dssp -CCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred -cccccCCCHHHHHHHhcchHHHHHHHHc
Confidence 7899999999999999999999999873
No 16
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-40 Score=264.86 Aligned_cols=212 Identities=22% Similarity=0.208 Sum_probs=150.8
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCCC--------CCchhhcccchHHHHHHHHHHHHhH-HHHHHHHHcCcHH--
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQ--------IDKEIYSKNKAAARIAHSALELEER-KAINDLLRLNLDF-- 76 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~--------~~~~~~~g~t~~~~~l~~A~~~~~~-~~~~~L~~~g~~~-- 76 (271)
..|+.+.+||+.||+.|+.++|++|++.|.+ ++..+..|.|| |+.|+..+.. .+++.|++.|+++
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~----L~~a~~~~~~~~~v~~Ll~~Gadvn~ 81 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHP----LCQCPKCAPAQKRLAKVPASGLGVNV 81 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------CCCCTTC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCH----HHHHHHhCCHHHHHHHHHHCCCCCCC
Confidence 4577789999999999999999999999875 44566788899 9998887664 4778888777654
Q ss_pred --------HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q psy8012 77 --------LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147 (271)
Q Consensus 77 --------l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~ 147 (271)
||+|+..++.+ +++|++.+++++..+..|.||+++|+..++.+++++|++.|++++..|..|+||||+|+.
T Consensus 82 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~ 161 (269)
T 4b93_B 82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACS 161 (269)
T ss_dssp CCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 88888888888 888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCC
Q psy8012 148 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKE 226 (271)
Q Consensus 148 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (271)
. ++.+++++|+++|+++|.++. .|.||||+| ..|+.+++++|+++|++
T Consensus 162 ~-g~~~~v~~Ll~~gadvn~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~Gad----------------------------- 210 (269)
T 4b93_B 162 G-GHHELVALLLQHGASINASNN-KGNTALHEAVIEKHVFVVELLLLHGAS----------------------------- 210 (269)
T ss_dssp T-TCGGGHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCC-----------------------------
T ss_pred C-CCHHHHHHHHHCCCCCCcccc-CCCcHHHHHHHcCCHHHHHHHHHCCCC-----------------------------
Confidence 7 888888888888888888887 788888888 88888888888888877
Q ss_pred CCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 227 FGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
++.+|..|+||||+|++++ +++++|+.+
T Consensus 211 ------------~~~~d~~G~TpL~~A~~~~--~i~~lL~~l 238 (269)
T 4b93_B 211 ------------VQVLNKRQRTAVDCAEQNS--KIMELLQVV 238 (269)
T ss_dssp ------------SCCCCTTSCCSGGGSCTTC--HHHHHTTC-
T ss_pred ------------CCCcCCCCCCHHHHHHhCC--cHHHHHHHH
Confidence 4489999999999998765 467776543
No 17
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.5e-39 Score=252.40 Aligned_cols=205 Identities=20% Similarity=0.191 Sum_probs=188.5
Q ss_pred CCChHHHHHHhCCHHHHHHHHHCCCCCCc-hhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcH-------------HHH
Q psy8012 13 DHKPIAIAIQIGDPQIVKELQNHGAQIDK-EIYSKNKAAARIAHSALELEERKAINDLLRLNLD-------------FLK 78 (271)
Q Consensus 13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~-~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~-------------~l~ 78 (271)
|.||||+|++.|+.+++++|++.|.++.. .+..|.|| ||+|+..|+.+++++|++.|++ +||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~ 77 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIP----LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCH----HHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHH
Confidence 78999999999999999999999987654 78899999 9999999999999999999822 399
Q ss_pred HHHhcChHH-HHHHHhcC--CCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012 79 NVRSNKYDE-VKKNIEDG--ACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV 155 (271)
Q Consensus 79 ~a~~~~~~~-~~~ll~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 155 (271)
+|+..++.+ +++|++.| ++++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus 78 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v 156 (228)
T 2dzn_A 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV-GSLKLI 156 (228)
T ss_dssp HHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHH
Confidence 999999999 99999998 88899999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHhCC-CCccccCCCCCCCHHHHH-hcCCchHHHHHH-hchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCC
Q psy8012 156 RKLLRHG-AYYNVVDGKTGKTPLLHA-GKGAREVNTVLL-YFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDY 232 (271)
Q Consensus 156 ~~Ll~~g-~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 232 (271)
++|++.| ++++.++. .|.||||+| ..++.+++++|+ ++|+++
T Consensus 157 ~~Ll~~g~~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~---------------------------------- 201 (228)
T 2dzn_A 157 ELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAEY---------------------------------- 201 (228)
T ss_dssp HHHHTTTCCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHCCCS----------------------------------
T ss_pred HHHHhcCcccccCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcCCCC----------------------------------
Confidence 9999999 99999998 899999999 999999999999 888874
Q ss_pred CCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012 233 NNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK 267 (271)
Q Consensus 233 ~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~ 267 (271)
+.+|..|.||+++|++. +++++|.+
T Consensus 202 -------~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 202 -------DLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp -------CCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred -------CccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 47999999999999754 67777764
No 18
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.2e-37 Score=248.10 Aligned_cols=218 Identities=28% Similarity=0.242 Sum_probs=199.9
Q ss_pred CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-----
Q psy8012 2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----- 76 (271)
Q Consensus 2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----- 76 (271)
|.+.+...+..|.||||+|++.|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++|+++
T Consensus 28 g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 103 (285)
T 1wdy_A 28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP----FLLAAIAGSVKLLKLFLSKGADVNECDF 103 (285)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHHTCHHHHHHHHHTTCCTTCBCT
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCCCccCc
Confidence 455666668889999999999999999999999999999999999999 99999999999999999997654
Q ss_pred -----HHHHHhcChHH-HHHHHhcCCCCccC----------CCCCCcHHHHHHHhCCHHHHHHHHHC-CCCccccCCCCC
Q psy8012 77 -----LKNVRSNKYDE-VKKNIEDGACINVS----------SERCGSALIYAAWKGYEEIVDLLLDN-GADVNFKSATGF 139 (271)
Q Consensus 77 -----l~~a~~~~~~~-~~~ll~~~~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~ 139 (271)
|++|+..++.+ +++|++.|++++.. +..|.||||+|+..|+.+++++|++. |++++..+..|+
T Consensus 104 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 183 (285)
T 1wdy_A 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183 (285)
T ss_dssp TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSC
T ss_pred ccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCC
Confidence 99999999999 99999999999887 77899999999999999999999987 999999999999
Q ss_pred cHHHHHHHhCCC----HHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHh-chhhHHHHhhcCCcccc---
Q psy8012 140 TALHMACRFHDD----DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLY-FIHEIFKLMANNDTTIL--- 210 (271)
Q Consensus 140 t~l~~a~~~~~~----~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~-~g~~~~~~~~~~~~~~~--- 210 (271)
||||+|+.. ++ .+++++|+++|++++.++. .|.||||+| ..++.+++++|++ .|++++..+..+.++..
T Consensus 184 t~l~~a~~~-~~~~~~~~i~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~ 261 (285)
T 1wdy_A 184 NALIHALLS-SDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261 (285)
T ss_dssp CHHHHHHHC-SCTTTHHHHHHHHHHTTCCSSCCCT-TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHH
T ss_pred CHHHHHHHc-cccchHHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHH
Confidence 999999998 88 8999999999999999998 899999999 9999999999999 89998866655554432
Q ss_pred --cchHHHHHHHhhccC
Q psy8012 211 --DRLDEMKSLILEGTK 225 (271)
Q Consensus 211 --~~~~~~~~l~~~~~~ 225 (271)
...+++++|+..|++
T Consensus 262 ~~~~~~i~~~Ll~~Ga~ 278 (285)
T 1wdy_A 262 ELKLKKIAELLCKRGAS 278 (285)
T ss_dssp HTTCHHHHHHHHHHSSC
T ss_pred HcCcHHHHHHHHHcCCC
Confidence 458999999999999
No 19
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.2e-37 Score=258.06 Aligned_cols=227 Identities=22% Similarity=0.206 Sum_probs=155.6
Q ss_pred CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HH
Q psy8012 9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LK 78 (271)
Q Consensus 9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~ 78 (271)
.|..|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++|+++ ||
T Consensus 54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~ 129 (351)
T 3utm_A 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVP----LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129 (351)
T ss_dssp SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH----HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 46678888888888888888888888888888888888888 88888888888888888886544 88
Q ss_pred HHHhcChHH-HHHHHhcCCCCccCC------------------------------------------------------C
Q psy8012 79 NVRSNKYDE-VKKNIEDGACINVSS------------------------------------------------------E 103 (271)
Q Consensus 79 ~a~~~~~~~-~~~ll~~~~~~~~~~------------------------------------------------------~ 103 (271)
+|+..++.+ +++|++.|++++..+ .
T Consensus 130 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (351)
T 3utm_A 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCC
Confidence 888888888 888888888776543 3
Q ss_pred CCCcHHHHHHHh---CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH
Q psy8012 104 RCGSALIYAAWK---GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180 (271)
Q Consensus 104 ~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A 180 (271)
.|.||||+|+.. +..+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+|
T Consensus 210 ~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~n~~d~-~g~t~L~~A 287 (351)
T 3utm_A 210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER-AHNDVMEVLHKHGAKMNALDS-LGQTALHRA 287 (351)
T ss_dssp TCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHH
T ss_pred CCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCcCC-CCCCHHHHH
Confidence 456777777777 446777888888888877777788888888877 888888888888888887777 788888888
Q ss_pred -hcCCchHHHHHHhchhhHHHHhhcCCcccccc-hHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhC
Q psy8012 181 -GKGAREVNTVLLYFIHEIFKLMANNDTTILDR-LDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRG 257 (271)
Q Consensus 181 -~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~ 257 (271)
..++.+++++|+++|++++..+..+.++.... .+..++|...+. .....+.+++..|+++|
T Consensus 288 ~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~~~~~~l~~~~~----------------~~~~~~~~~l~~A~~~g 350 (351)
T 3utm_A 288 ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTP----------------MRTSDVDYRLLEASKAG 350 (351)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSCHHHHHHHHHC-----------------------------------
T ss_pred HHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhhHHHHHHHHhccc----------------cccCcceeehhhhhccC
Confidence 77788888888888877765544444333222 223333333322 24556666777776665
No 20
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=8.6e-37 Score=253.76 Aligned_cols=243 Identities=26% Similarity=0.201 Sum_probs=210.5
Q ss_pred CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-----
Q psy8012 2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----- 76 (271)
Q Consensus 2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----- 76 (271)
|.+++...+..|.||||+||+.|+.+++++|+++|++++.++..+.++ ++.++..+...++..++..++++
T Consensus 48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 123 (337)
T 4g8k_A 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP----FILAAIAGSVKLLKLFLSKGADVNECDF 123 (337)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHHTCHHHHHHHHTTTCCTTCBCT
T ss_pred CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCch----hHHHHhcccchhhHHhhhccchhhhhcc
Confidence 667776667789999999999999999999999999999999999999 99999999999999999886544
Q ss_pred -----HHHHHhcChHH-HHHHHhcCCCCccC----------CCCCCcHHHHHHHhCCHHHHHHHHH-CCCCccccCCCCC
Q psy8012 77 -----LKNVRSNKYDE-VKKNIEDGACINVS----------SERCGSALIYAAWKGYEEIVDLLLD-NGADVNFKSATGF 139 (271)
Q Consensus 77 -----l~~a~~~~~~~-~~~ll~~~~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~ 139 (271)
+++|+..++.+ ++++++.|++++.. +..|.||||+|+..|+.+++++|++ .|++++..+..|.
T Consensus 124 ~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~ 203 (337)
T 4g8k_A 124 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 203 (337)
T ss_dssp TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSC
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCC
Confidence 99999999999 99999999987754 3468899999999999999999995 6899999999999
Q ss_pred cHHHHHHHhCCC----HHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhc-hhhHHHHhhcCCcccc---
Q psy8012 140 TALHMACRFHDD----DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYF-IHEIFKLMANNDTTIL--- 210 (271)
Q Consensus 140 t~l~~a~~~~~~----~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~--- 210 (271)
|+++.++.. +. ..++++|+++|++++.++. .|+||||+| ..++.+++++|++. |++++..+..+.++..
T Consensus 204 t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~ 281 (337)
T 4g8k_A 204 NALIHALLS-SDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 281 (337)
T ss_dssp CHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCG-GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHH
T ss_pred cHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHH
Confidence 999988765 32 4578999999999999998 899999999 99999999999975 7888766655544322
Q ss_pred --cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 211 --DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 211 --~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
...+++++|+.+|++ ++ +.|||++|+++|+.+++++|-+.
T Consensus 282 ~~g~~~iv~~Ll~~GAd-------------~n-----~~~~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 282 ELKLKKIAELLCKRGAS-------------TD-----CGDLVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp HTTCHHHHHHHHTTSCS-------------ST-----TCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCC-------------CC-----CCCHHHHHHHcCCHHHHHHHHHC
Confidence 458999999999987 32 34699999999999999999763
No 21
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.6e-37 Score=258.85 Aligned_cols=236 Identities=22% Similarity=0.192 Sum_probs=209.3
Q ss_pred CCCCChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHH
Q psy8012 11 YEDHKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKN 79 (271)
Q Consensus 11 ~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~ 79 (271)
..|.|+||.|++.|+.+.+++|+.. +.+++.++..|.|| ||+|+..|+.+++++|+++|+++ ||+
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 97 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP----LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 4578999999999999999998876 88999999999999 99999999999999999998765 999
Q ss_pred HHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-----------------------
Q psy8012 80 VRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS----------------------- 135 (271)
Q Consensus 80 a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~----------------------- 135 (271)
|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+
T Consensus 98 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence 99999999 999999999999999999999999999999999999999999877544
Q ss_pred -------------------------------CCCCcHHHHHHHhC--CCHHHHHHHHhCCCCccccCCCCCCCHHHHH-h
Q psy8012 136 -------------------------------ATGFTALHMACRFH--DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-G 181 (271)
Q Consensus 136 -------------------------------~~~~t~l~~a~~~~--~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~ 181 (271)
..|.||||+|+... +..+++++|++.|++++.++. .|.||||+| .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~ 256 (351)
T 3utm_A 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAE 256 (351)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHH
T ss_pred cccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHH
Confidence 45678999999861 337899999999999999998 899999999 9
Q ss_pred cCCchHHHHHHhchhhHHHHhhcCCcccc-----cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHh
Q psy8012 182 KGAREVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKR 256 (271)
Q Consensus 182 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~ 256 (271)
.++.+++++|+++|++++..+..+.++.. ...+++++|+..|++ ++.+|..|.||+++|
T Consensus 257 ~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad-------------~~~~~~~g~tal~~a--- 320 (351)
T 3utm_A 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-------------PSIISLQGFTAAQMG--- 320 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------TTCCCTTSCCHHHHS---
T ss_pred cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-------------CCCcCCCCCChhhhh---
Confidence 99999999999999999876655554432 458999999999998 778999999999998
Q ss_pred CCCcHHHHHHHH
Q psy8012 257 GFPLLEELEKKL 268 (271)
Q Consensus 257 ~~~~~~~ll~~~ 268 (271)
..+++++|.+.
T Consensus 321 -~~~~~~~l~~~ 331 (351)
T 3utm_A 321 -NEAVQQILSES 331 (351)
T ss_dssp -CHHHHHHHHHC
T ss_pred -hHHHHHHHHhc
Confidence 45677777663
No 22
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=6.5e-37 Score=241.33 Aligned_cols=199 Identities=21% Similarity=0.205 Sum_probs=172.6
Q ss_pred CCCChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHH
Q psy8012 12 EDHKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKK 90 (271)
Q Consensus 12 ~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ 90 (271)
.|.||||+|++.|+.+++++|++. |++++.++..|.|| ||+|+..|+.+++++|++.|+++.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~~~~~~------------- 64 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETA----LHIAALYDNLEAAMVLMEAAPELV------------- 64 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHHCGGGG-------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCH----HHHHHHcCCHHHHHHHHHcCchhc-------------
Confidence 589999999999999999999998 99999999999999 888888888888877777665310
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCC-------------CCCcHHHHHHHhCCCHHHHHH
Q psy8012 91 NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA-------------TGFTALHMACRFHDDDSIVRK 157 (271)
Q Consensus 91 ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~~ 157 (271)
....+..+..|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+.. ++.+++++
T Consensus 65 ----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~ 139 (232)
T 2rfa_A 65 ----FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV-GSEEIVRL 139 (232)
T ss_dssp ----GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHH-TCHHHHHH
T ss_pred ----cccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHc-CCHHHHHH
Confidence 112356778899999999999999999999999999988765 799999999999 99999999
Q ss_pred HHhCCCCccccCCCCCCCHHHHH-hcCCchHH----HHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCC
Q psy8012 158 LLRHGAYYNVVDGKTGKTPLLHA-GKGAREVN----TVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDY 232 (271)
Q Consensus 158 Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~----~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 232 (271)
|+++|++++.++. .|.||||+| ..++.+++ ++|+++|++..
T Consensus 140 Ll~~ga~~~~~d~-~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~--------------------------------- 185 (232)
T 2rfa_A 140 LIEHGADIRAQDS-LGNTVLHILILQPNKTFACQMYNLLLSYDGGDH--------------------------------- 185 (232)
T ss_dssp HHHTTCCTTCCCT-TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS---------------------------------
T ss_pred HHHCCCCCCCCCC-CCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh---------------------------------
Confidence 9999999999998 999999999 99999988 88888877642
Q ss_pred CCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 233 NNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 233 ~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
.....+.+|..|.||||+|++.|+.+++++|.+.
T Consensus 186 --~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 186 --LKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp --SCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred --hhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 0011257899999999999999999999999774
No 23
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-38 Score=259.88 Aligned_cols=215 Identities=25% Similarity=0.289 Sum_probs=191.9
Q ss_pred CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012 7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF---------- 76 (271)
Q Consensus 7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~---------- 76 (271)
...+..|.||||.||..|+.+++++|+++|++++..+..|.|| ||+|+..|+.+++++|+++|+++
T Consensus 34 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 109 (299)
T 1s70_B 34 TKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTA----LHQACIDDNVDMVKFLVENGANINQPDNEGWIP 109 (299)
T ss_dssp CCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH----HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 3445678899999999999999999999999999999999999 99999999999999999998765
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHH-CCCCccc---------------------
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD-NGADVNF--------------------- 133 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~--------------------- 133 (271)
||+|+..++.+ +++|++.|++++..+..|.||||+|+..++.+++++++. .+.+++.
T Consensus 110 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (299)
T 1s70_B 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189 (299)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC
Confidence 99999999999 999999999999999999999999999999999987774 3444332
Q ss_pred -----cCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCc
Q psy8012 134 -----KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDT 207 (271)
Q Consensus 134 -----~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~ 207 (271)
.+..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++
T Consensus 190 ~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~gad~~-------- 259 (299)
T 1s70_B 190 INDVRHAKSGGTALHVAAAK-GYTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDME-------- 259 (299)
T ss_dssp CCCCCCTTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred cchhhhcCCCCCHHHHHHHC-CcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHhcCCHHHHHHHHHcCCCCC--------
Confidence 456899999999999 999999999999999999998 899999999 9999999999999998854
Q ss_pred ccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 208 TILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
.+|..|.||+|+|++.....+.+++++.
T Consensus 260 ---------------------------------~~d~~g~t~l~~A~~~~~~~l~~l~~~~ 287 (299)
T 1s70_B 260 ---------------------------------AVNKVGQTAFDVADEDILGYLEELQKKQ 287 (299)
T ss_dssp ---------------------------------CCCTTSCCTTTSCCSGGGHHHHHHHHHT
T ss_pred ---------------------------------CcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999876655566666553
No 24
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.4e-38 Score=257.20 Aligned_cols=208 Identities=18% Similarity=0.110 Sum_probs=192.0
Q ss_pred CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012 7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF---------- 76 (271)
Q Consensus 7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~---------- 76 (271)
...|.+|.||||+|+..|+.+++++|+++|++++.. +|.|| ||+|+..|+.+++++|+++|+++
T Consensus 25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~----L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 98 (285)
T 3kea_A 25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFP----LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA 98 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCH----HHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCH----HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcH
Confidence 345789999999999999999999999999999987 49999 99999999999999999998765
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCC-CcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERC-GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~ 154 (271)
||+|+..++.+ +++|++.|++++..+..| .||||+|+..|+.+++++|++.|.+.... ..|.||||+|+.. ++.++
T Consensus 99 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~-g~~~~ 176 (285)
T 3kea_A 99 LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKN-GHVDM 176 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHT-TCHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHc-ChHHH
Confidence 99999999999 999999999999999999 89999999999999999999999876322 2889999999998 99999
Q ss_pred HHHHHhCCCCccccCCCCCCCH-HHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccC
Q psy8012 155 VRKLLRHGAYYNVVDGKTGKTP-LLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTK 225 (271)
Q Consensus 155 ~~~Ll~~g~~~~~~~~~~g~tp-L~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 225 (271)
+++|+++|++++.++. .|+|| ||+| ..++.+++++|+++|++++..+. .....+..+++++|+.+|++
T Consensus 177 v~~Ll~~gad~n~~~~-~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~--~a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 177 MILLLDYMTSTNTNNS-LLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL--ENVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp HHHHHHHHHHTCTTCC-CBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG--GGGTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh--hhhhcCCHHHHHHHHHcCCC
Confidence 9999999999999998 89998 9999 99999999999999999886653 45667889999999999988
No 25
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=246.82 Aligned_cols=215 Identities=20% Similarity=0.154 Sum_probs=191.9
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH---------HH
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF---------LK 78 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~---------l~ 78 (271)
..+.+|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++|+++ ||
T Consensus 31 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~ 106 (261)
T 2xai_A 31 IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP----LFNACVSGSWDCVNLLLQHGASVQPESDLASPIH 106 (261)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHH
Confidence 356789999999999999999999999999999999999999 99999999999999999997654 99
Q ss_pred HHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHH
Q psy8012 79 NVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157 (271)
Q Consensus 79 ~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~ 157 (271)
+|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. +..|.||||+|+.. ++.+++++
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~-~~~~~v~~ 184 (261)
T 2xai_A 107 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVART-ASEELACL 184 (261)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHH-TCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHc-CCHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999995 88999999999999 99999999
Q ss_pred HHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcc
Q psy8012 158 LLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFS 236 (271)
Q Consensus 158 Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (271)
|+++|++++.++. .|+||||+| .. .+++++|++++...... ...
T Consensus 185 Ll~~gad~~~~d~-~g~tpl~~A~~~--~~~~~~ll~~~~~~~l~--------------------~~~------------ 229 (261)
T 2xai_A 185 LMDFGADTQAKNA-EGKRPVELVPPE--SPLAQLFLEREGPPSLM--------------------QLC------------ 229 (261)
T ss_dssp HHHTTCCTTCCCT-TSCCGGGGSCTT--CTHHHHHHHC-CCCCHH--------------------HHH------------
T ss_pred HHHcCCCCCCcCC-CCCChhhhcccc--ccHHHHHHhccCCccHH--------------------HHH------------
Confidence 9999999999998 999999999 54 45899999886542100 000
Q ss_pred cccccccCCCchHHHHHHHhCCCcHHHH
Q psy8012 237 LLKVTKNDAGETILDIAKKRGFPLLEEL 264 (271)
Q Consensus 237 ~~~~~~d~~g~tpl~~A~~~~~~~~~~l 264 (271)
..+.+|..|.||+|+|.+...++.++-
T Consensus 230 -~~~~r~~~g~t~l~~~~~~~~p~~l~~ 256 (261)
T 2xai_A 230 -RLRIRKCFGIQQHHKITKLVLPEDLKQ 256 (261)
T ss_dssp -HHHHHTTSCTTCGGGGGGSSSCHHHHH
T ss_pred -HHHHHHHhchhccccCcccCCcHHHHH
Confidence 034789999999999999888876543
No 26
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=247.58 Aligned_cols=210 Identities=19% Similarity=0.126 Sum_probs=166.4
Q ss_pred CCCCCChHHHHHHhCCHHHHHHHHHCC-----------CCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH--
Q psy8012 10 PYEDHKPIAIAIQIGDPQIVKELQNHG-----------AQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-- 76 (271)
Q Consensus 10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g-----------~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-- 76 (271)
...|.|+||+|+..|+.+.+..++..+ -.++.++..|.|| ||+|+..|+.+++++|++.|+++
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~----L~~Aa~~g~~~~v~~Ll~~g~~~~~ 87 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSP----MHEAAIHGHQLSLRNLISQGWAVNI 87 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCH----HHHHHHTTCHHHHHHHHHTTCCSCE
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCH----HHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 467999999999999988877766543 2345678899999 99999999999999999987654
Q ss_pred --------HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q psy8012 77 --------LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147 (271)
Q Consensus 77 --------l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~ 147 (271)
||+|+..++.+ +++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+ .|.||||+|+.
T Consensus 88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~ 166 (285)
T 3d9h_A 88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAAR 166 (285)
T ss_dssp ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHH
T ss_pred cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHH
Confidence 99999999999 999999999999999999999999999999999999999999888644 59999999999
Q ss_pred hCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCC
Q psy8012 148 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKE 226 (271)
Q Consensus 148 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (271)
. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|++.|++++
T Consensus 167 ~-g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--------------------------- 217 (285)
T 3d9h_A 167 R-GHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVKKLLESGADVN--------------------------- 217 (285)
T ss_dssp H-TCHHHHHHHHHTTCCTTCCBT-TTBCHHHHHHHTTCHHHHHHHHHTTCCTT---------------------------
T ss_pred c-CCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHCCCCCC---------------------------
Confidence 8 999999999999999999998 899999999 9999999999999988853
Q ss_pred CCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 227 FGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 227 ~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
+|..|.||||+|++.|+.+++++|.+.
T Consensus 218 ---------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 218 ---------------QGKGQDSPLHAVVRTASEELACLLMDF 244 (285)
T ss_dssp ---------------CCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred ---------------CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 488999999999999999999999764
No 27
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.5e-36 Score=241.18 Aligned_cols=190 Identities=19% Similarity=0.180 Sum_probs=174.1
Q ss_pred CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc-H-----
Q psy8012 2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL-D----- 75 (271)
Q Consensus 2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~-~----- 75 (271)
|.+.+...|..|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+..++.+++++|+++++ +
T Consensus 46 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 121 (253)
T 1yyh_A 46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP----LHAAVSADAQGVFQILIRNRATDLDARM 121 (253)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHHTCHHHHHHHHHSTTSCTTCCC
T ss_pred cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence 344555668899999999999999999999999999999999999999 999999999999999999875 2
Q ss_pred -----HHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC
Q psy8012 76 -----FLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH 149 (271)
Q Consensus 76 -----~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~ 149 (271)
+||+|+..++.+ +++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus 122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~- 200 (253)
T 1yyh_A 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE- 200 (253)
T ss_dssp TTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-
T ss_pred CCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHC-
Confidence 399999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012 150 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE 197 (271)
Q Consensus 150 ~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~ 197 (271)
++.+++++|+++|++++.++. .|.||+++| .+|+.+++++|......
T Consensus 201 ~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 201 GSYETAKVLLDHFANRDITDH-MDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred CCHHHHHHHHHcCCCcccccc-CCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 999999999999999999998 999999999 99999999999977544
No 28
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4.1e-36 Score=224.95 Aligned_cols=156 Identities=33% Similarity=0.377 Sum_probs=140.5
Q ss_pred ChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-HHHHHh
Q psy8012 15 KPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-VKKNIE 93 (271)
Q Consensus 15 t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~~~ll~ 93 (271)
+.|+.||+.|+.++|++|+++|++++.++..|.|| +|+| +..+..+ +++|++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~----l~~a-----------------------~~~~~~~~~~~ll~ 58 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTP----LHHA-----------------------AENGHKEVVKLLIS 58 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHH-----------------------HHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH----HHHH-----------------------HHcCCHHHHHHHHh
Confidence 46999999999999999999999999999999999 5555 5555555 666677
Q ss_pred cCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCC
Q psy8012 94 DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTG 173 (271)
Q Consensus 94 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g 173 (271)
.|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.. ++.+++++|+++|++++.++. .|
T Consensus 59 ~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~gad~~~~d~-~G 136 (169)
T 4gpm_A 59 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNTSDS-DG 136 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TS
T ss_pred cccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCccccCC-CC
Confidence 7889999999999999999999999999999999999999999999999999998 999999999999999999998 99
Q ss_pred CCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012 174 KTPLLHA-GKGAREVNTVLLYFIHEIF 199 (271)
Q Consensus 174 ~tpL~~A-~~~~~~~~~~L~~~g~~~~ 199 (271)
+||||+| ..++.+++++|+++|+++.
T Consensus 137 ~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 137 RTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 9999999 9999999999999999975
No 29
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.3e-36 Score=237.05 Aligned_cols=185 Identities=22% Similarity=0.206 Sum_probs=177.8
Q ss_pred CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012 7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF---------- 76 (271)
Q Consensus 7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~---------- 76 (271)
...+.+|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+..++.+++++|+++|+++
T Consensus 34 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 109 (231)
T 3aji_A 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP----LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTP 109 (231)
T ss_dssp GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCH----HHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 3457889999999999999999999999999999999999999 99999999999999999997654
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV 155 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 155 (271)
||+|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus 110 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v 188 (231)
T 3aji_A 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE-ERVEEA 188 (231)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHC-CCHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012 156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE 197 (271)
Q Consensus 156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~ 197 (271)
++|+++|++++.++. .|.|||++| ..++.+++++|.++|++
T Consensus 189 ~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 189 KFLVTQGASIYIENK-EEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HHHHHTTCCSCCCCT-TSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCCCCC-CCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 999999999999998 999999999 99999999999999876
No 30
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.5e-36 Score=254.81 Aligned_cols=186 Identities=17% Similarity=0.163 Sum_probs=174.6
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHc---------------
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRL--------------- 72 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~--------------- 72 (271)
..|..|.||||+|+..|+.+++++|++.|++++. ..|.|| ||+|+..|+.+++++|+++
T Consensus 48 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~----L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~ 121 (364)
T 3ljn_A 48 IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKP----IHLAVMANKTDLVVALVEGAKERGQMPESLLNEC 121 (364)
T ss_dssp CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCH----HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCH----HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhc
Confidence 3577899999999999999999999999997664 479999 9999999999999999998
Q ss_pred ----------------CcHHHHHHHhcC--hHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCC---
Q psy8012 73 ----------------NLDFLKNVRSNK--YDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD--- 130 (271)
Q Consensus 73 ----------------g~~~l~~a~~~~--~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~--- 130 (271)
|..+||+|+..+ +.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++
T Consensus 122 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 201 (364)
T 3ljn_A 122 DEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS 201 (364)
T ss_dssp CCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS
T ss_pred chHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Confidence 445699999999 899 9999999999999999999999999999999999999999988
Q ss_pred --ccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHH
Q psy8012 131 --VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKL 201 (271)
Q Consensus 131 --~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~ 201 (271)
++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|+++...
T Consensus 202 ~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~ 273 (364)
T 3ljn_A 202 LRLDYANKQGNSHLHWAILI-NWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ 273 (364)
T ss_dssp CCTTCCCTTCCCTTHHHHTT-TCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTCCHHHHHHHHHHSCHHHHH
T ss_pred ccccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHhChHHHHHHHHHcCCchhhh
Confidence 999999999999999998 999999999999999999998 999999999 999999999999999987543
No 31
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.8e-36 Score=241.28 Aligned_cols=206 Identities=23% Similarity=0.172 Sum_probs=170.6
Q ss_pred CCCChHHHHHHhCCHH----HHHHHHHCCCCCCc----hhhcccchHHHHHHHHHHH---HhHHHHHHHHHcCcHHHHHH
Q psy8012 12 EDHKPIAIAIQIGDPQ----IVKELQNHGAQIDK----EIYSKNKAAARIAHSALEL---EERKAINDLLRLNLDFLKNV 80 (271)
Q Consensus 12 ~g~t~L~~A~~~g~~~----~~~~Ll~~g~~~~~----~~~~g~t~~~~~l~~A~~~---~~~~~~~~L~~~g~~~l~~a 80 (271)
.|.||||.||+.|+.+ ++++|+++|++++. ++..|.|| ||+|+.. |+.+++++|+++|+++-.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~----L~~A~~~~~~g~~~~v~~Ll~~g~~~~~-- 74 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC----LMKAVLNLQDGVNACIMPLLQIDKDSGN-- 74 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH----HHHHHHTCBTTBCTTHHHHHHHHHHTTC--
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH----HHHHHHccccchHHHHHHHHhcCCcccc--
Confidence 4899999999999997 56777789999998 89999999 8888888 888888888776643100
Q ss_pred HhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCC-------------CCcHHHHHHH
Q psy8012 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT-------------GFTALHMACR 147 (271)
Q Consensus 81 ~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~~t~l~~a~~ 147 (271)
+..++ .......+..|.||||+|+..|+.+++++|++.|++++..+.. |.||||+|+.
T Consensus 75 -------~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~ 145 (256)
T 2etb_A 75 -------PKPLV--NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC 145 (256)
T ss_dssp -------SSCGG--GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHH
T ss_pred -------hhhhc--ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHH
Confidence 00000 0112234567999999999999999999999999999998875 9999999999
Q ss_pred hCCCHHHHHHHHh---CCCCccccCCCCCCCHHHHH-h--cCCch-------HHHHHHhchhhHHHHhhcCCcccccchH
Q psy8012 148 FHDDDSIVRKLLR---HGAYYNVVDGKTGKTPLLHA-G--KGARE-------VNTVLLYFIHEIFKLMANNDTTILDRLD 214 (271)
Q Consensus 148 ~~~~~~~~~~Ll~---~g~~~~~~~~~~g~tpL~~A-~--~~~~~-------~~~~L~~~g~~~~~~~~~~~~~~~~~~~ 214 (271)
. ++.+++++|++ .|++++.++. .|+||||+| . .++.+ ++++|+++|++++...
T Consensus 146 ~-~~~~~v~~Ll~~~~~ga~~n~~d~-~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~------------ 211 (256)
T 2etb_A 146 T-KQWDVVTYLLENPHQPASLEATDS-LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV------------ 211 (256)
T ss_dssp T-TCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC------------
T ss_pred c-CCHHHHHHHHhccccCCCcCccCC-CCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccc------------
Confidence 8 99999999999 9999999998 999999999 6 77888 9999999998863100
Q ss_pred HHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 215 EMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
...+.+|..|.||||+|++.|+.+++++|-+.
T Consensus 212 ----------------------~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 212 ----------------------QLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp ----------------------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------------ccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 00257999999999999999999999999875
No 32
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.1e-35 Score=229.08 Aligned_cols=189 Identities=23% Similarity=0.293 Sum_probs=168.8
Q ss_pred CCCCCChHHHHHHhCCHHHHHHHHHCCC-CCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHH
Q psy8012 10 PYEDHKPIAIAIQIGDPQIVKELQNHGA-QIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEV 88 (271)
Q Consensus 10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~ 88 (271)
+..+.||||.|+..|+.+.+++|+..+. +++..+..|.|| ||+|+..|+.+++++|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~v~~L------------------- 58 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP----LNIAVHNNDIEIAKAL------------------- 58 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH----HHHHHHHTCHHHHHHH-------------------
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHH-------------------
Confidence 3568999999999999999999999876 999999999999 7776666666555554
Q ss_pred HHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHH-HCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCC-CCcc
Q psy8012 89 KKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLL-DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG-AYYN 166 (271)
Q Consensus 89 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g-~~~~ 166 (271)
++.|++++..+..|.||||+|+..|+.+++++|+ ..+.+++..+..|.||||+|+.. ++.+++++|++.| ++++
T Consensus 59 ---l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~ 134 (201)
T 3hra_A 59 ---IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK-GHIDNVKLLLEDGREDID 134 (201)
T ss_dssp ---HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHT-TCHHHHHHHHHHCCCCTT
T ss_pred ---HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCcC
Confidence 5567888999999999999999999999999999 66789999999999999999998 9999999999999 9999
Q ss_pred ccCCCCCCCHHHHH-hcCC-----chHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccc
Q psy8012 167 VVDGKTGKTPLLHA-GKGA-----REVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKV 240 (271)
Q Consensus 167 ~~~~~~g~tpL~~A-~~~~-----~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (271)
.++. .|.||||+| ..+. .+++++|+++|+++ +
T Consensus 135 ~~~~-~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-----------------------------------------~ 172 (201)
T 3hra_A 135 FQND-FGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-----------------------------------------S 172 (201)
T ss_dssp CCCT-TSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-----------------------------------------T
T ss_pred CCCC-CCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-----------------------------------------C
Confidence 9998 999999999 8777 88899998888874 4
Q ss_pred cccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012 241 TKNDAGETILDIAKKRGFPLLEELEKK 267 (271)
Q Consensus 241 ~~d~~g~tpl~~A~~~~~~~~~~ll~~ 267 (271)
.+|..|.||||+|+++|+.+++++|.+
T Consensus 173 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 173 IKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 789999999999999999999999875
No 33
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1e-37 Score=246.64 Aligned_cols=186 Identities=22% Similarity=0.240 Sum_probs=164.1
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCC----CCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-------
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGA----QIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF------- 76 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~----~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~------- 76 (271)
..|.+|.||||+|+..|+.+++++|++.+. +++.++..|.|| ||+|+..++.+++++|+++|+++
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 78 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTP----LHLAVITNQPEIAEALLGAGCDPELRDFRG 78 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCH----HHHHHHTTCHHHHHCCCSCCCCSCCCCTTC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 357899999999999999999999998765 789999999999 99999999999999999987654
Q ss_pred ---HHHHHhcChHH-HHHHHhcCCC------CccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCC-CCCcHHHHH
Q psy8012 77 ---LKNVRSNKYDE-VKKNIEDGAC------INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA-TGFTALHMA 145 (271)
Q Consensus 77 ---l~~a~~~~~~~-~~~ll~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a 145 (271)
||+|+..++.+ +++|++.+++ ++..+..|.||||+|+..|+.+++++|++.|++++..+. .|+||||+|
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158 (236)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence 99999999999 9999998875 466778899999999999999999999999999998887 899999999
Q ss_pred HHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012 146 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIF 199 (271)
Q Consensus 146 ~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~ 199 (271)
+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++..
T Consensus 159 ~~~-~~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 159 VDL-QNPDLVSLLLKCGADVNRVTY-QGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp HHT-TCHHHHHHHHTTTCCSCCCCT-TCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred HHc-CCHHHHHHHHHcCCCCCcccC-CCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 998 999999999999999999998 899999999 9999999999999998864
No 34
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.1e-35 Score=238.43 Aligned_cols=210 Identities=20% Similarity=0.158 Sum_probs=175.0
Q ss_pred CCCCCCCCChHHHHHHhCCHHHHHHHHH----CCCCCC----chhhcccchHHHHHHHHHHH---HhHHHHHHHHHcCcH
Q psy8012 7 PYVPYEDHKPIAIAIQIGDPQIVKELQN----HGAQID----KEIYSKNKAAARIAHSALEL---EERKAINDLLRLNLD 75 (271)
Q Consensus 7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~~----~~~~~g~t~~~~~l~~A~~~---~~~~~~~~L~~~g~~ 75 (271)
...|..|.||||.||+.|+.++++.|++ .+.+++ ..+..|.|| ||+|+.. |+.+++++|+++|++
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tp----L~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTC----LLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCH----HHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCH----HHHHHHHHhcCChHHHHHHHHhhcc
Confidence 3467889999999999999999888886 566666 357799999 9999986 999999999988753
Q ss_pred HHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCC--------------CCCc
Q psy8012 76 FLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA--------------TGFT 140 (271)
Q Consensus 76 ~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~t 140 (271)
+ . ++.++.. .....+..|.||||+|+..|+.+++++|++.|++++..+. .|.|
T Consensus 83 ~----------~~~~~~i~~--~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~t 150 (273)
T 2pnn_A 83 T----------DSLKQFVNA--SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGEL 150 (273)
T ss_dssp T----------TCHHHHHTC--CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBS
T ss_pred c----------cchhHHhhc--ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCC
Confidence 1 1 3334432 2344567899999999999999999999999999999886 7999
Q ss_pred HHHHHHHhCCCHHHHHHHHh---CCCCccccCCCCCCCHHHHH-hcCC---------chHHHHHHhchhhHHHHhhcCCc
Q psy8012 141 ALHMACRFHDDDSIVRKLLR---HGAYYNVVDGKTGKTPLLHA-GKGA---------REVNTVLLYFIHEIFKLMANNDT 207 (271)
Q Consensus 141 ~l~~a~~~~~~~~~~~~Ll~---~g~~~~~~~~~~g~tpL~~A-~~~~---------~~~~~~L~~~g~~~~~~~~~~~~ 207 (271)
|||+|+.. ++.+++++|++ .|++++.++. .|+||||+| ..++ .+++++|+++|++++...
T Consensus 151 pL~~A~~~-g~~~~v~~Ll~~~~~gad~~~~d~-~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~----- 223 (273)
T 2pnn_A 151 PLSLAACT-NQLAIVKFLLQNSWQPADISARDS-VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL----- 223 (273)
T ss_dssp HHHHHHHT-TCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHc-CCHHHHHHHHhcccCCCCceeeCC-CCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccc-----
Confidence 99999998 99999999999 9999999998 999999999 7777 688999999998874110
Q ss_pred ccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 208 TILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 208 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
...+.+|..|.||||+|++.|+.+++++|-+.
T Consensus 224 -----------------------------~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 224 -----------------------------KLEEITNRKGLTPLALAASSGKIGVLAYILQR 255 (273)
T ss_dssp -----------------------------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------------------ccccccCCCCCCHHHHHHHhChHHHHHHHHHC
Confidence 00246899999999999999999999999764
No 35
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=9.6e-35 Score=229.97 Aligned_cols=183 Identities=26% Similarity=0.243 Sum_probs=169.7
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc-------------
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL------------- 74 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~------------- 74 (271)
..+..|.||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..++.+++++|++.++
T Consensus 41 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~----l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g 116 (241)
T 1k1a_A 41 IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA----AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116 (241)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCccccccccCcCC
Confidence 346789999999999999999999999999999999999999 999999999999999999876
Q ss_pred -HHHHHHHhcChHH-HHHHHhcCCCCccCC-CCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCC
Q psy8012 75 -DFLKNVRSNKYDE-VKKNIEDGACINVSS-ERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151 (271)
Q Consensus 75 -~~l~~a~~~~~~~-~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~ 151 (271)
.+|++|+..++.+ +++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++
T Consensus 117 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~ 195 (241)
T 1k1a_A 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR-GL 195 (241)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH-TC
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CC
Confidence 2399999999999 999999999999998 7899999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchh
Q psy8012 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIH 196 (271)
Q Consensus 152 ~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~ 196 (271)
.+++++|+++|++++.++. .|.|||++| ..++.++++.|.+.++
T Consensus 196 ~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 196 LPLVRTLVRSGADSSLKNC-HNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp HHHHHHHHHTTCCTTCCCT-TSCCTTTTCSSHHHHHHHTC------
T ss_pred HHHHHHHHhcCCCCCCcCC-CCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 9999999999999999998 999999999 9999999999988764
No 36
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=1.1e-34 Score=232.39 Aligned_cols=208 Identities=21% Similarity=0.172 Sum_probs=174.6
Q ss_pred CCCCCChHHHHHHhCCHHHHHHH----HHCCCCCCchh----hcccchHHHHHHHHH---HHHhHHHHHHHHHcCcHHHH
Q psy8012 10 PYEDHKPIAIAIQIGDPQIVKEL----QNHGAQIDKEI----YSKNKAAARIAHSAL---ELEERKAINDLLRLNLDFLK 78 (271)
Q Consensus 10 ~~~g~t~L~~A~~~g~~~~~~~L----l~~g~~~~~~~----~~g~t~~~~~l~~A~---~~~~~~~~~~L~~~g~~~l~ 78 (271)
+..|+|+||.||+.|+.+.++.| ++.|++++..+ ..|.|| ||+|+ ..|+.+++++|++.|+++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~----L~~A~~~~~~g~~~~v~~Ll~~g~~~-- 75 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTC----LPKALLNLSAGRNDTIPILLDIAEKT-- 75 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCH----HHHHHTSCBTTBCTHHHHHHHHHHHT--
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcH----HHHHHHHhhcCCHHHHHHHHHhcccc--
Confidence 56799999999999999965544 45899999776 669999 99998 679999999998876542
Q ss_pred HHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC--------------CCCCcHHHH
Q psy8012 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS--------------ATGFTALHM 144 (271)
Q Consensus 79 ~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~t~l~~ 144 (271)
+. +..++ ...++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|+||||+
T Consensus 76 -----~~--~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~ 146 (260)
T 3jxi_A 76 -----GN--MREFI--NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSL 146 (260)
T ss_dssp -----TC--HHHHH--TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHH
T ss_pred -----cc--hHhhh--cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHH
Confidence 00 22222 34456667789999999999999999999999999999988 689999999
Q ss_pred HHHhCCCHHHHHHHHh---CCCCccccCCCCCCCHHHHH-hcCC---------chHHHHHHhchhhHHHHhhcCCccccc
Q psy8012 145 ACRFHDDDSIVRKLLR---HGAYYNVVDGKTGKTPLLHA-GKGA---------REVNTVLLYFIHEIFKLMANNDTTILD 211 (271)
Q Consensus 145 a~~~~~~~~~~~~Ll~---~g~~~~~~~~~~g~tpL~~A-~~~~---------~~~~~~L~~~g~~~~~~~~~~~~~~~~ 211 (271)
|+.. ++.+++++|++ .|++++.++. .|+||||+| ..++ .+++++|+++|++++..
T Consensus 147 A~~~-g~~~~v~~Ll~~~~~ga~~~~~d~-~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~---------- 214 (260)
T 3jxi_A 147 AACT-NQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD---------- 214 (260)
T ss_dssp HHHT-TCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT----------
T ss_pred HHHc-CCHHHHHHHHhccccCCCCcccCC-CCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccc----------
Confidence 9998 99999999999 9999999998 999999999 7676 68999999999987410
Q ss_pred chHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 212 RLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
....+.+|..|.||||+|++.|+.+++++|-+.
T Consensus 215 ------------------------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 215 ------------------------TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp ------------------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 001257999999999999999999999999875
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.6e-34 Score=234.69 Aligned_cols=219 Identities=15% Similarity=0.058 Sum_probs=185.1
Q ss_pred HHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH--------HHHHHhcChHH-HHHH
Q psy8012 21 IQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF--------LKNVRSNKYDE-VKKN 91 (271)
Q Consensus 21 ~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~--------l~~a~~~~~~~-~~~l 91 (271)
++..+.+.+..++..+ +++.+|..|.|| ||+|+..|+.+++++|+++|+++ ||+|+..++.+ +++|
T Consensus 7 i~~~~~~~v~~lL~~~-~~~~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK-DTFKADVHGHSA----SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGGCCHHHHHHHHHST-TTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH
T ss_pred HHhcCHHHHHHHHHhC-CCCccCCCCCCH----HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 3445555555555554 688899999999 99999999999999999998765 99999999999 9999
Q ss_pred HhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCC-CcHHHHHHHhCCCHHHHHHHHhCCCCccccCC
Q psy8012 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG-FTALHMACRFHDDDSIVRKLLRHGAYYNVVDG 170 (271)
Q Consensus 92 l~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~ 170 (271)
++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..| .||||+|+.. ++.+++++|+++|++.....
T Consensus 82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~- 159 (285)
T 3kea_A 82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML-NDVSIVSYFLSEIPSTFDLA- 159 (285)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT-TCHHHHHHHHTTSCTTCCCS-
T ss_pred HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCcccccc-
Confidence 99999999999999999999999999999999999999999999999 7999999998 99999999999999884432
Q ss_pred CCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc------cchHHHHHHHhhccCCCCCCCCCCccccccccc
Q psy8012 171 KTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL------DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKN 243 (271)
Q Consensus 171 ~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d 243 (271)
.|.||||+| ..++.+++++|+++|++++..+..+.++++ ...+++++|+..|++ ++.+|
T Consensus 160 -~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-------------~~~~~ 225 (285)
T 3kea_A 160 -ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-------------IYSAN 225 (285)
T ss_dssp -THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-------------STTTT
T ss_pred -CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-------------CCCCC
Confidence 699999999 999999999999999998866665555534 346777777777777 34444
Q ss_pred CCCchHHHHHHHhCCCcHHHHHHH
Q psy8012 244 DAGETILDIAKKRGFPLLEELEKK 267 (271)
Q Consensus 244 ~~g~tpl~~A~~~~~~~~~~ll~~ 267 (271)
. .|+..|+.+++++|.+
T Consensus 226 ~-------~a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 226 L-------ENVLLDDAEIAKMIIE 242 (285)
T ss_dssp G-------GGGTTTCHHHHHHHHH
T ss_pred h-------hhhhcCCHHHHHHHHH
Confidence 2 4566777777777765
No 38
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=237.86 Aligned_cols=176 Identities=24% Similarity=0.222 Sum_probs=141.2
Q ss_pred CCCCCCCChHHHHHHhCCH-HHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012 8 YVPYEDHKPIAIAIQIGDP-QIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF---------- 76 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~-~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~---------- 76 (271)
..+..|.||||.|+..+.. .++++|++.|++++.++..|.|| ||+|+..|+.+++++|++.|+++
T Consensus 47 ~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~Tp----Lh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~ 122 (269)
T 4b93_B 47 AADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSP----LHVAALHGRADLIPLLLKHGANAGARNADQAVP 122 (269)
T ss_dssp ----------------------------CCCCTTCCCTTSCCH----HHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCH
T ss_pred ccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCH----HHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCc
Confidence 3467799999999998876 57899999999999999999999 99999999999999999998765
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV 155 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 155 (271)
++.|+..++.+ +++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus 123 l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~-g~~~~v 201 (269)
T 4b93_B 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIE-KHVFVV 201 (269)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHT-TCHHHH
T ss_pred cccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHc-CCHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHH
Q psy8012 156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVL 191 (271)
Q Consensus 156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L 191 (271)
++|+++|+|++.++. .|+||||+| .++. ++++|
T Consensus 202 ~~Ll~~Gad~~~~d~-~G~TpL~~A~~~~~--i~~lL 235 (269)
T 4b93_B 202 ELLLLHGASVQVLNK-RQRTAVDCAEQNSK--IMELL 235 (269)
T ss_dssp HHHHHTTCCSCCCCT-TSCCSGGGSCTTCH--HHHHT
T ss_pred HHHHHCCCCCCCcCC-CCCCHHHHHHhCCc--HHHHH
Confidence 999999999999998 999999999 6553 44444
No 39
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=6.2e-34 Score=239.72 Aligned_cols=183 Identities=21% Similarity=0.205 Sum_probs=170.8
Q ss_pred CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcC---c----------H
Q psy8012 9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLN---L----------D 75 (271)
Q Consensus 9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g---~----------~ 75 (271)
.|.+|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|++++ . .
T Consensus 162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t 237 (373)
T 2fo1_E 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA----LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237 (373)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH----HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH----HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCC
Confidence 47789999999999999999999999999999999999999 99999999999999999876 2 2
Q ss_pred HHHHHHhcC---hHH-HHHHHhcCCCCcc--------CCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCccccCCCCCcHH
Q psy8012 76 FLKNVRSNK---YDE-VKKNIEDGACINV--------SSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTAL 142 (271)
Q Consensus 76 ~l~~a~~~~---~~~-~~~ll~~~~~~~~--------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l 142 (271)
+||+|+..+ ..+ +++|++.|++++. .+..|.||||+|+..|+.+++++|++.+ ++++..|..|+|||
T Consensus 238 ~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL 317 (373)
T 2fo1_E 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317 (373)
T ss_dssp HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred HHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH
Confidence 399999987 888 9999999999886 5678999999999999999999999876 99999999999999
Q ss_pred HHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012 143 HMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE 197 (271)
Q Consensus 143 ~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~ 197 (271)
|+|+.. ++.+++++|+++|++++.++. .|.|||++| ..++.+++++|++++++
T Consensus 318 ~~A~~~-g~~~iv~~Ll~~gad~~~~d~-~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 318 MLAAQE-GRIEVVMYLIQQGASVEAVDA-TDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHH-TCHHHHHHHHHTTCCSSCCCS-SSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHHHc-CCHHHHHHHHHcCCCccCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 999999 999999999999999999998 899999999 99999999999999876
No 40
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=6.4e-34 Score=213.02 Aligned_cols=148 Identities=36% Similarity=0.478 Sum_probs=140.7
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV 155 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 155 (271)
|+.|+..|+.+ ++.|++.|+++|.+|..|.||||+|+..++.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus 8 L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~-g~~~~v 86 (169)
T 4gpm_A 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVV 86 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc-CCHHHH
Confidence 67778888888 8888889999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012 156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN 234 (271)
Q Consensus 156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 234 (271)
++|+++|+++|.++. .|+||||+| ..|+.+++++|+++|++++
T Consensus 87 ~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~gad~~----------------------------------- 130 (169)
T 4gpm_A 87 KLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGADVN----------------------------------- 130 (169)
T ss_dssp HHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------------
T ss_pred HHHHHCcCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----------------------------------
Confidence 999999999999998 999999999 9999999999999999854
Q ss_pred cccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012 235 FSLLKVTKNDAGETILDIAKKRGFPLLEELEKK 267 (271)
Q Consensus 235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~ 267 (271)
.+|..|+||||+|+++|+.+++++|.+
T Consensus 131 ------~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 131 ------TSDSDGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred ------ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 789999999999999999999999976
No 41
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.3e-34 Score=232.94 Aligned_cols=184 Identities=24% Similarity=0.190 Sum_probs=166.6
Q ss_pred CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcH-------------HHHHHHhcChHH-HHHHHhcCCCCccCCCC
Q psy8012 39 IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD-------------FLKNVRSNKYDE-VKKNIEDGACINVSSER 104 (271)
Q Consensus 39 ~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~-------------~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~ 104 (271)
++.++..|.|| ||+|+..|+.+++++|+++|++ +||+|+..++.+ +++|++.|++++.++..
T Consensus 2 ~~~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~ 77 (282)
T 1oy3_D 2 FGYVTEDGDTA----LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG 77 (282)
T ss_dssp CCCCCTTCCCH----HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT
T ss_pred CCccCCCCCcH----HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence 35678899999 9999999999999999987654 399999999999 99999999999999999
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHCCCC-----------------------------------------------ccccCCC
Q psy8012 105 CGSALIYAAWKGYEEIVDLLLDNGAD-----------------------------------------------VNFKSAT 137 (271)
Q Consensus 105 g~t~l~~a~~~~~~~~~~~Ll~~~~~-----------------------------------------------~~~~~~~ 137 (271)
|.||||+|+..|+.+++++|++.+++ ++..+..
T Consensus 78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 1oy3_D 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157 (282)
T ss_dssp SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTT
T ss_pred CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCC
Confidence 99999999999999999999987754 5666788
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHH
Q psy8012 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEM 216 (271)
Q Consensus 138 ~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 216 (271)
|.||||+|+.. ++.+++++|+++|++++..+...|.||||+| ..++.+++++|+++|++++
T Consensus 158 g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~----------------- 219 (282)
T 1oy3_D 158 GHTPLHVAVIH-KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT----------------- 219 (282)
T ss_dssp SCCHHHHHHHT-TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------
T ss_pred CcCHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc-----------------
Confidence 99999999998 9999999999999999998863599999999 9999999999999988854
Q ss_pred HHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 217 KSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
.+|..|.||||+|+++|+.+++++|.+.
T Consensus 220 ------------------------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 247 (282)
T 1oy3_D 220 ------------------------ARMYGGRTPLGSALLRPNPILARLLRAH 247 (282)
T ss_dssp ------------------------CCCTTSCCHHHHHHTSSCHHHHHHHHHT
T ss_pred ------------------------ccccCCCCHHHHHHHcCCcHHHHHHHHc
Confidence 7899999999999999999999999764
No 42
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.5e-33 Score=222.75 Aligned_cols=185 Identities=26% Similarity=0.276 Sum_probs=172.9
Q ss_pred CCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHHHhcChHH-HHHHHhcCCCCccCCCCC
Q psy8012 37 AQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNVRSNKYDE-VKKNIEDGACINVSSERC 105 (271)
Q Consensus 37 ~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g 105 (271)
.+++.++..|.|| ||+|+..|+.+++++|+++|+++ |++|+..++.+ +++|++.|++++..+..|
T Consensus 2 ~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 77 (237)
T 3b7b_A 2 MNFKMEHQNKRSP----LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77 (237)
T ss_dssp CCCCCSSCCSCCH----HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTS
T ss_pred CCcccccCCCCCH----HHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Confidence 4677889999999 99999999999999999997654 99999999999 999999999999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcC
Q psy8012 106 GSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKG 183 (271)
Q Consensus 106 ~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~ 183 (271)
.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+.. ++.+++++|++.|++++..+. .|.||||+| ..+
T Consensus 78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~ 155 (237)
T 3b7b_A 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY-KHVDLVKLLLSKGSDINIRDN-EENICLHWAAFSG 155 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHC
T ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHCC
Confidence 99999999999999999999998 88999999999999999998 999999999999999999998 899999999 999
Q ss_pred CchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHH
Q psy8012 184 AREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEE 263 (271)
Q Consensus 184 ~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ 263 (271)
+.+++++|+++|++++ .+|..|.||||+|++.|+.++++
T Consensus 156 ~~~~~~~Ll~~g~~~~-----------------------------------------~~~~~g~t~L~~A~~~~~~~~v~ 194 (237)
T 3b7b_A 156 CVDIAEILLAAKCDLH-----------------------------------------AVNIHGDSPLHIAARENRYDCVV 194 (237)
T ss_dssp CHHHHHHHHTTTCCTT-----------------------------------------CCCTTCCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCCC-----------------------------------------CcCCCCCCHHHHHHHhCCHhHHH
Confidence 9999999999988754 78999999999999999999999
Q ss_pred HHHHH
Q psy8012 264 LEKKL 268 (271)
Q Consensus 264 ll~~~ 268 (271)
+|.+.
T Consensus 195 ~Ll~~ 199 (237)
T 3b7b_A 195 LFLSR 199 (237)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 98763
No 43
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.2e-33 Score=220.40 Aligned_cols=181 Identities=22% Similarity=0.221 Sum_probs=166.3
Q ss_pred CCCCCCCCCCChHHHHHHhCCHHHHHHHHHCC--CCCCc-hhhcccchHHHHHHHHHHHHhHHHHHHHHHcC--cH----
Q psy8012 5 YDPYVPYEDHKPIAIAIQIGDPQIVKELQNHG--AQIDK-EIYSKNKAAARIAHSALELEERKAINDLLRLN--LD---- 75 (271)
Q Consensus 5 ~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g--~~~~~-~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g--~~---- 75 (271)
.....+.+|.||||+|+..|+.+++++|+++| ++++. .+..|.|| ||+|+..++.+++++|+++| ++
T Consensus 28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 103 (228)
T 2dzn_A 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP----FHIACSVGNLEVVKSLYDRPLKPDLNKI 103 (228)
T ss_dssp GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCH----HHHHHHHCCHHHHHHHHSSSSCCCTTCC
T ss_pred ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCH----HHHHHHcCCHHHHHHHHhCCCCcccccC
Confidence 34457889999999999999999999999999 55555 77899999 99999999999999999987 43
Q ss_pred ------HHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHH
Q psy8012 76 ------FLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACR 147 (271)
Q Consensus 76 ------~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~ 147 (271)
+||+|+..++.+ +++|++.|++++.++..|.||||+|+..|+.+++++|++.| ++++..+..|+||||+|+.
T Consensus 104 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~ 183 (228)
T 2dzn_A 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183 (228)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH
T ss_pred CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHH
Confidence 399999999999 99999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hCCCHHHHHHHH-hCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012 148 FHDDDSIVRKLL-RHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYF 194 (271)
Q Consensus 148 ~~~~~~~~~~Ll-~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~ 194 (271)
. ++.+++++|+ ++|++++.++. .|.||+++| .. ++.++|+++
T Consensus 184 ~-~~~~~v~~Ll~~~ga~~~~~~~-~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 184 E-GHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp T-TCHHHHHHHHHHHCCCSCCBCT-TSCBGGGGCSST---THHHHHHTT
T ss_pred c-CCHHHHHHHHHhcCCCCCccCC-CCCcHHHHHHHH---HHHHHHHhc
Confidence 8 9999999999 89999999998 999999999 43 677777654
No 44
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=1.3e-32 Score=210.67 Aligned_cols=161 Identities=24% Similarity=0.306 Sum_probs=147.2
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE 87 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~ 87 (271)
..|..|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+..++.++
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~----L~~A~~~~~~~~---------------------- 83 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTA----LIWAVKNNRLGI---------------------- 83 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCH----HHHHHHTTCHHH----------------------
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccH----HHHHHHcCCHHH----------------------
Confidence 468899999999999999999999999999999999999999 666655555544
Q ss_pred HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccc
Q psy8012 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 167 (271)
Q Consensus 88 ~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~ 167 (271)
+++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++.
T Consensus 84 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~ 162 (192)
T 2rfm_A 84 AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY-GRSEIVKKLLELGADISA 162 (192)
T ss_dssp HHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCC
Confidence 5555666788999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cCCCCCCCHHHHH-hcCCchHHHHHHhchh
Q psy8012 168 VDGKTGKTPLLHA-GKGAREVNTVLLYFIH 196 (271)
Q Consensus 168 ~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~ 196 (271)
++. .|.|||++| ..++.+++++|+++|.
T Consensus 163 ~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~ 191 (192)
T 2rfm_A 163 RDL-TGLTAEASARIFGRQEVIKIFTEVRR 191 (192)
T ss_dssp BCT-TSCBHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCC-CCCCHHHHHHHhCcHHHHHHHHhccC
Confidence 998 999999999 9999999999998763
No 45
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=215.18 Aligned_cols=185 Identities=19% Similarity=0.135 Sum_probs=170.7
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhh-cccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIY-SKNKAAARIAHSALELEERKAINDLLRLNLDF---------- 76 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~---------- 76 (271)
..+..|.||||+|+..|+.+++++|+++|++++.... .|.|| ||+|+..++.+++++|++.|+++
T Consensus 37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 112 (240)
T 3eu9_A 37 QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP----LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC 112 (240)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH----HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh----hHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 3467899999999999999999999999999886554 49999 99999999999999999987654
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCC-HHHHHHHHHCCCCccccCC-CCCcHHHHHHHhCCCHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGY-EEIVDLLLDNGADVNFKSA-TGFTALHMACRFHDDDS 153 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~ 153 (271)
|++|+..++.+ +++|++.|++++..+..|.||||+|+..++ .+++++|++.|++++..+. .|.||||+|+.. ++.+
T Consensus 113 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~ 191 (240)
T 3eu9_A 113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA-GNTT 191 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHH-TCHH
T ss_pred HHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHc-CCHH
Confidence 99999999999 999999999999999999999999997776 8899999999999999886 899999999999 9999
Q ss_pred HHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhH
Q psy8012 154 IVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEI 198 (271)
Q Consensus 154 ~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~ 198 (271)
++++|+++|++++..+. .|.|||++| ..++.+++++|++.+.+.
T Consensus 192 ~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 192 VISLLLEAGANVDAQNI-KGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHHHTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 99999999999999998 999999999 999999999999998764
No 46
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=2.7e-32 Score=205.17 Aligned_cols=159 Identities=29% Similarity=0.294 Sum_probs=143.7
Q ss_pred CCChHHHHHHhCCHHHHHHHHHCCCC-CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHH
Q psy8012 13 DHKPIAIAIQIGDPQIVKELQNHGAQ-IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKN 91 (271)
Q Consensus 13 g~t~L~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~l 91 (271)
+.||||.|++.|+.+++++|++.+.+ ++.++..|.|| ||+|+..++.++ +++|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------v~~L 55 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTP----LIWASAFGEIET----------------------VRFL 55 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCH----HHHHHHTTCHHH----------------------HHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCH----HHHHHHcCCHHH----------------------HHHH
Confidence 57899999999999999999999987 78889999999 666655555544 5555
Q ss_pred HhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCC
Q psy8012 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGK 171 (271)
Q Consensus 92 l~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~ 171 (271)
++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++.
T Consensus 56 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~- 133 (172)
T 3v30_A 56 LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG-NHVKCVEALLARGADLTTEAD- 133 (172)
T ss_dssp HHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-
T ss_pred HHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCccccCC-
Confidence 666788999999999999999999999999999999999999999999999999998 999999999999999999998
Q ss_pred CCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012 172 TGKTPLLHA-GKGAREVNTVLLYFIHEIF 199 (271)
Q Consensus 172 ~g~tpL~~A-~~~~~~~~~~L~~~g~~~~ 199 (271)
.|.||||+| ..++.+++++|+++|++..
T Consensus 134 ~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (172)
T 3v30_A 134 SGYTPMDLAVALGYRKVQQVIENHILKLF 162 (172)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999999875
No 47
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=4.1e-32 Score=203.19 Aligned_cols=160 Identities=23% Similarity=0.205 Sum_probs=146.7
Q ss_pred CCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHH
Q psy8012 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKN 91 (271)
Q Consensus 12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~l 91 (271)
.|.||||.|+..|+.+++++|++.|.+++.++..|.|| ||+|+..++.++ +++|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------v~~L 55 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTP----LMWAAAHGQIAV----------------------VEFL 55 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCH----HHHHHHTTCHHH----------------------HHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCH----HHHHHHCCCHHH----------------------HHHH
Confidence 58999999999999999999999999999999999999 655555554444 5555
Q ss_pred HhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCC
Q psy8012 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGK 171 (271)
Q Consensus 92 l~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~ 171 (271)
++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++.++.
T Consensus 56 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~- 133 (167)
T 3v31_A 56 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG-NHVKCVKMLLESGADPTIETD- 133 (167)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-
T ss_pred HHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCcCC-
Confidence 666788999999999999999999999999999999999999999999999999998 999999999999999999998
Q ss_pred CCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012 172 TGKTPLLHA-GKGAREVNTVLLYFIHEIF 199 (271)
Q Consensus 172 ~g~tpL~~A-~~~~~~~~~~L~~~g~~~~ 199 (271)
.|.|||++| ..++.+++++|++++.+..
T Consensus 134 ~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 134 SGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999998864
No 48
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=3.5e-32 Score=204.00 Aligned_cols=163 Identities=30% Similarity=0.308 Sum_probs=142.9
Q ss_pred CCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcC
Q psy8012 5 YDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNK 84 (271)
Q Consensus 5 ~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~ 84 (271)
+.+.....+.|+|+.||+.|+.+++++|+++|++++.++..|.|| ||+|+..++.++
T Consensus 6 ~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~------------------- 62 (169)
T 2y1l_E 6 HHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTP----LHLAAFNGHLEI------------------- 62 (169)
T ss_dssp -------CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHH-------------------
T ss_pred ccccCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHHcCCHHH-------------------
Confidence 334456778899999999999999999999999999999999999 666655555544
Q ss_pred hHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC
Q psy8012 85 YDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164 (271)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~ 164 (271)
+++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++
T Consensus 63 ---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~ 138 (169)
T 2y1l_E 63 ---VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF-GHLEIVEVLLKNGAD 138 (169)
T ss_dssp ---HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC
T ss_pred ---HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC
Confidence 5555666788899999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccccCCCCCCCHHHHH-hcCCchHHHHHHhch
Q psy8012 165 YNVVDGKTGKTPLLHA-GKGAREVNTVLLYFI 195 (271)
Q Consensus 165 ~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g 195 (271)
++.++. .|.|||++| ..++.+++++|+++|
T Consensus 139 ~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 139 VNAQDK-FGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TTCCCT-TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCcCC-CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 999998 999999999 999999999999876
No 49
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=225.77 Aligned_cols=189 Identities=20% Similarity=0.175 Sum_probs=166.4
Q ss_pred CCChHHHHHHhCCHHHHHHHHHCCCC--CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHH
Q psy8012 13 DHKPIAIAIQIGDPQIVKELQNHGAQ--IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKK 90 (271)
Q Consensus 13 g~t~L~~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ 90 (271)
+.+++|.|+..|+.+.++.+++.+.+ ++.+|..|.|| ||+|+..|+.+++ ++
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~----Lh~A~~~g~~~~v----------------------~~ 129 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTA----LHYSVSHANFPVV----------------------QQ 129 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCH----HHHHHHTTCHHHH----------------------HH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCH----HHHHHHCCCHHHH----------------------HH
Confidence 46788999999999999999888765 88889999999 6666555555555 55
Q ss_pred HHhcCC-CCccCCCCCCcHHHHHH-----HhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC
Q psy8012 91 NIEDGA-CINVSSERCGSALIYAA-----WKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164 (271)
Q Consensus 91 ll~~~~-~~~~~~~~g~t~l~~a~-----~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~ 164 (271)
|++.|+ +++..+..|.||||+|+ ..++.+++++|++.|.+.+..+..|+||||+|+.. ++.+++++|+++|++
T Consensus 130 Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~gad 208 (276)
T 4hbd_A 130 LLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH-GRVDVVKALLACEAD 208 (276)
T ss_dssp HHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCC
T ss_pred HHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHhCCCC
Confidence 555666 88999999999999999 67889999999999999988899999999999998 999999999999999
Q ss_pred ccccCCCCCCCHHHHH-hcCCchHHHHHHh-chhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccc
Q psy8012 165 YNVVDGKTGKTPLLHA-GKGAREVNTVLLY-FIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTK 242 (271)
Q Consensus 165 ~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (271)
++.++. .|.||||+| ..|+.+++++|++ .|+++ +.+
T Consensus 209 ~n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-----------------------------------------~~~ 246 (276)
T 4hbd_A 209 VNVQDD-DGSTALMCACEHGHKEIAGLLLAVPSCDI-----------------------------------------SLT 246 (276)
T ss_dssp TTCCCT-TSCCHHHHHHHHTCHHHHHHHHTSTTCCT-----------------------------------------TCC
T ss_pred CCCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCCCCC-----------------------------------------cCc
Confidence 999998 999999999 9999999999998 78874 378
Q ss_pred cCCCchHHHHHHHhCCCcHHHHHHHHhc
Q psy8012 243 NDAGETILDIAKKRGFPLLEELEKKLAE 270 (271)
Q Consensus 243 d~~g~tpl~~A~~~~~~~~~~ll~~~~~ 270 (271)
|..|.||||+|++.|+.+++++|.+..+
T Consensus 247 d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 247 DRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 9999999999999999999999988654
No 50
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-33 Score=232.03 Aligned_cols=175 Identities=17% Similarity=0.152 Sum_probs=124.7
Q ss_pred CCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcC
Q psy8012 5 YDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNK 84 (271)
Q Consensus 5 ~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~ 84 (271)
++...|.+|.||||+||..|+.+++++|+++|++++.++..|.|| ||+|+..+
T Consensus 123 vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~Tp---------------------------Lh~A~~~g 175 (327)
T 1sw6_A 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC---------------------------LVKAVKSV 175 (327)
T ss_dssp SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCH---------------------------HHHHHHSS
T ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH---------------------------HHHHHHhc
Confidence 333345556666666666666666666666666666666666666 55555555
Q ss_pred h---HH-HHHHHhcC-CCCccCCCCCCcHHHHHHH----hCCHHHHHHHHHC--------------------CCCccccC
Q psy8012 85 Y---DE-VKKNIEDG-ACINVSSERCGSALIYAAW----KGYEEIVDLLLDN--------------------GADVNFKS 135 (271)
Q Consensus 85 ~---~~-~~~ll~~~-~~~~~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~--------------------~~~~~~~~ 135 (271)
+ .+ ++.|++.+ ++++.++..|.||||+|+. .|+.+++++|++. |++++..+
T Consensus 176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~ 255 (327)
T 1sw6_A 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 255 (327)
T ss_dssp HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccc
Confidence 5 34 55555554 5688899999999999999 8999999999876 88899999
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchH
Q psy8012 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLD 214 (271)
Q Consensus 136 ~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~ 214 (271)
..|+||||.|+. +++|+++ +++.++. .|+||||+| ..|+.+++++|+++|++++
T Consensus 256 ~~g~t~L~~a~~-------~~~Ll~~--~~n~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~--------------- 310 (327)
T 1sw6_A 256 GERKDSILENLD-------LKWIIAN--MLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPF--------------- 310 (327)
T ss_dssp ----CHHHHHCS-------HHHHHHH--TTTCCCT-TSCCHHHHHHHHCCHHHHHHHHHTTCCTT---------------
T ss_pred ccCCChhHHHHH-------HHHHHHh--CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCc---------------
Confidence 999999999873 7888888 6888888 899999999 9999999999999999854
Q ss_pred HHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhC
Q psy8012 215 EMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRG 257 (271)
Q Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~ 257 (271)
.+|..|+||||+|+++|
T Consensus 311 --------------------------~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 311 --------------------------IANKSGLRPVDFGAGLE 327 (327)
T ss_dssp --------------------------CCCTTSCCGGGGTCC--
T ss_pred --------------------------ccCCCCCCHHHHHHhcC
Confidence 79999999999998875
No 51
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=3.5e-32 Score=202.45 Aligned_cols=157 Identities=20% Similarity=0.169 Sum_probs=141.3
Q ss_pred CCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-HH
Q psy8012 11 YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-VK 89 (271)
Q Consensus 11 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~~ 89 (271)
....||||.|++.|+.+++++|+++|++++.++..|.|| ||+| +. ++.+ ++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~----L~~A-----------------------~~-~~~~~v~ 54 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA----LQVM-----------------------KL-GNPEIAR 54 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCH----HHHC-----------------------CS-SCHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccH----HHHH-----------------------Hc-CcHHHHH
Confidence 346799999999999999999999999999999999999 5544 44 5555 66
Q ss_pred HHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC-cccc
Q psy8012 90 KNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY-YNVV 168 (271)
Q Consensus 90 ~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~-~~~~ 168 (271)
+|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++ ++..
T Consensus 55 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~ 133 (162)
T 1ihb_A 55 RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGHR 133 (162)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCC
T ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHccCCCCCCc
Confidence 66677888999999999999999999999999999999999999999999999999998 999999999999998 5888
Q ss_pred CCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012 169 DGKTGKTPLLHA-GKGAREVNTVLLYFIHE 197 (271)
Q Consensus 169 ~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~ 197 (271)
+. .|.||||+| ..++.+++++|+++|++
T Consensus 134 ~~-~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 134 NH-KGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CT-TSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CC-CCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 88 899999999 99999999999999985
No 52
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-34 Score=236.96 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=182.2
Q ss_pred CCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----H---------
Q psy8012 11 YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----L--------- 77 (271)
Q Consensus 11 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----l--------- 77 (271)
..+.+|+| ....+++++|+++|++++.++..|.++ ++ |+.++++.|+++|+++ +
T Consensus 21 ~~~~~~~~----~~~~dlv~~ll~~ga~i~~~~~~g~~~----~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~ 87 (327)
T 1sw6_A 21 DRTAGPII----TFTHDLTSDFLSSPLKIMKALPSPVVN----DN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSS 87 (327)
T ss_dssp ----CCEE----ECCTTCCCSTTTSSCCCEECBCCCCCC----CH-----HHHHHHHHHHHHHHC---------------
T ss_pred cccccchh----hhcCchHHHHhhCCcccccCCCCCCcc----cC-----chhHHHHHHHHhccCCccccchHhhhcccc
Confidence 44566666 345577999999999999999999999 76 9999999999998654 3
Q ss_pred --------------HHHHhcChHH-HHHHHhcCCCCcc-CCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcH
Q psy8012 78 --------------KNVRSNKYDE-VKKNIEDGACINV-SSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTA 141 (271)
Q Consensus 78 --------------~~a~~~~~~~-~~~ll~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~ 141 (271)
+.++.....+ +++|++.|++++. ++..|.||||+|+..|+.+++++|++.|++++..+..|+||
T Consensus 88 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~Tp 167 (327)
T 1sw6_A 88 NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC 167 (327)
T ss_dssp ----------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCH
T ss_pred cccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 4445555566 8888899999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC---HHHHHHHHhCC-CCccccCCCCCCCHHHHH-h----cCCchHHHHHHhc------------------
Q psy8012 142 LHMACRFHDD---DSIVRKLLRHG-AYYNVVDGKTGKTPLLHA-G----KGAREVNTVLLYF------------------ 194 (271)
Q Consensus 142 l~~a~~~~~~---~~~~~~Ll~~g-~~~~~~~~~~g~tpL~~A-~----~~~~~~~~~L~~~------------------ 194 (271)
||+|+.. ++ .++++.|++.+ ++++.++. .|+||||+| . .++.+++++|++.
T Consensus 168 Lh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~ 245 (327)
T 1sw6_A 168 LVKAVKS-VNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245 (327)
T ss_dssp HHHHHHS-SHHHHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--
T ss_pred HHHHHHh-cccccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhh
Confidence 9999997 77 67888888876 78999998 999999999 7 8999999999998
Q ss_pred --hhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 195 --IHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 195 --g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
|++++..+. .+.++++....+++|+..+ ++.+|..|+||||+|++.|+.+++++|-+.
T Consensus 246 ~~g~~~~~~~~-~g~t~L~~a~~~~~Ll~~~---------------~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ 305 (327)
T 1sw6_A 246 EKESKPNDKNG-ERKDSILENLDLKWIIANM---------------LNAQDSNGDTCLNIAARLGNISIVDALLDY 305 (327)
T ss_dssp ---------------CHHHHHCSHHHHHHHT---------------TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT
T ss_pred cccCCcccccc-cCCChhHHHHHHHHHHHhC---------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 455554433 3344455444588888874 458999999999999999999999999764
No 53
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=3.1e-31 Score=204.16 Aligned_cols=161 Identities=30% Similarity=0.408 Sum_probs=147.0
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE 87 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~ 87 (271)
..+.+|.||||+|++.|+.+++++|+++|++++.++..|.|| ||+|+..++.+++++|++
T Consensus 34 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~----l~~A~~~~~~~~~~~Ll~---------------- 93 (201)
T 3hra_A 34 EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP----YLYAGAQGRTEILAYMLK---------------- 93 (201)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHH----------------
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHh----------------
Confidence 457789999999999999999999999999999999999999 777777666666666654
Q ss_pred HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHHhCCC-----HHHHHHHHhC
Q psy8012 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFHDD-----DSIVRKLLRH 161 (271)
Q Consensus 88 ~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~-----~~~~~~Ll~~ 161 (271)
..+.+++..+..|.||||+|+..|+.+++++|++.| ++++..+..|+||||+|+.. +. .+++++|+++
T Consensus 94 -----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~~~v~~Ll~~ 167 (201)
T 3hra_A 94 -----HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL-REGNQLYQDIVKLLMEN 167 (201)
T ss_dssp -----HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHS-SCCSHHHHHHHHHHHHT
T ss_pred -----ccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHh-ccchhhHHHHHHHHHHC
Confidence 346688899999999999999999999999999999 99999999999999999998 77 8999999999
Q ss_pred CCCccccCCCCCCCHHHHH-hcCCchHHHHHHhch
Q psy8012 162 GAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFI 195 (271)
Q Consensus 162 g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g 195 (271)
|++++.++. .|.||||+| ..++.+++++|+++|
T Consensus 168 ga~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 168 GADQSIKDN-SGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp TCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCCCCccCC-CCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999998 999999999 999999999999886
No 54
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.98 E-value=6.6e-32 Score=220.48 Aligned_cols=204 Identities=21% Similarity=0.187 Sum_probs=129.4
Q ss_pred HHHHHhCCHHHHHHHHHCCCCCCc---------hhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HH
Q psy8012 18 AIAIQIGDPQIVKELQNHGAQIDK---------EIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LK 78 (271)
Q Consensus 18 ~~A~~~g~~~~~~~Ll~~g~~~~~---------~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~ 78 (271)
+.+++.++.+.++.++.....+.. .+..|.|| ||.|+..|+.+++++|+++|+++ ||
T Consensus 3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~----l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 78 (299)
T 1s70_B 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAV----FLAACSSGDTEEVLRLLERGADINYANVDGLTALH 78 (299)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHH----HHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHH
T ss_pred hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccH----HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 357788888888888887654332 23457788 88888888888887777765433 55
Q ss_pred HHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHH
Q psy8012 79 NVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157 (271)
Q Consensus 79 ~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~ 157 (271)
+|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. +..++++.
T Consensus 79 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~ 157 (299)
T 1s70_B 79 QACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE-AMEELLQN 157 (299)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc-chHHHHHH
Confidence 555555555 5555555555555555555555555555555555555555555555555555555555554 55555544
Q ss_pred HHh-CCCCccc--------------------------cCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCccc
Q psy8012 158 LLR-HGAYYNV--------------------------VDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTI 209 (271)
Q Consensus 158 Ll~-~g~~~~~--------------------------~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~ 209 (271)
++. .|.+++. .+. .|.||||+| ..|+.+++++|+++|++
T Consensus 158 ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~d------------ 224 (299)
T 1s70_B 158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQARYD------------ 224 (299)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT-TCCCHHHHHHHHTCHHHHHHHHTTTCC------------
T ss_pred HHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC-CCCCHHHHHHHCCcHHHHHHHHHcCCC------------
Confidence 432 2333221 222 455555555 55555555555555554
Q ss_pred ccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 210 LDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
++.+|..|.||||+|++.|+.+++++|-+.
T Consensus 225 -----------------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 254 (299)
T 1s70_B 225 -----------------------------VNIKDYDGWTPLHAAAHWGKEEACRILVEN 254 (299)
T ss_dssp -----------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred -----------------------------CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc
Confidence 557899999999999999999999999764
No 55
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=3.3e-33 Score=220.77 Aligned_cols=181 Identities=18% Similarity=0.134 Sum_probs=149.9
Q ss_pred chhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc--------------HHHHHHHhcChHH-HHHHHhcCCCCccCCCCC
Q psy8012 41 KEIYSKNKAAARIAHSALELEERKAINDLLRLNL--------------DFLKNVRSNKYDE-VKKNIEDGACINVSSERC 105 (271)
Q Consensus 41 ~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~--------------~~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g 105 (271)
.+|..|.|| ||+|+..|+.+++++|++.+. .+||+|+..++.+ +++|++.|++++.++..|
T Consensus 3 ~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 78 (236)
T 1ikn_D 3 QLTEDGDSF----LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG 78 (236)
T ss_dssp ----CCCCT----THHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTC
T ss_pred cCCCCCCch----hHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 467789999 999999999999999987654 3499999999999 999999999999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHCCCC------ccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHH
Q psy8012 106 GSALIYAAWKGYEEIVDLLLDNGAD------VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 179 (271)
Q Consensus 106 ~t~l~~a~~~~~~~~~~~Ll~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~ 179 (271)
.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+.. ++.+++++|+++|++++.++...|.||||+
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~ 157 (236)
T 1ikn_D 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH-GYLGIVELLVSLGADVNAQEPCNGRTALHL 157 (236)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT-TCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence 9999999999999999999998865 456678899999999998 999999999999999998885479999999
Q ss_pred H-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCC
Q psy8012 180 A-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGF 258 (271)
Q Consensus 180 A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~ 258 (271)
| ..++.+++++|+++|++++ .+|..|.||||+|+++|+
T Consensus 158 A~~~~~~~~v~~Ll~~ga~~~-----------------------------------------~~~~~g~tpl~~A~~~~~ 196 (236)
T 1ikn_D 158 AVDLQNPDLVSLLLKCGADVN-----------------------------------------RVTYQGYSPYQLTWGRPS 196 (236)
T ss_dssp HHHTTCHHHHHHHHTTTCCSC-----------------------------------------CCCTTCCCGGGGCTTSSC
T ss_pred HHHcCCHHHHHHHHHcCCCCC-----------------------------------------cccCCCCCHHHHHHccCc
Confidence 9 9999999999999998865 556666666666666666
Q ss_pred CcHHHHHHH
Q psy8012 259 PLLEELEKK 267 (271)
Q Consensus 259 ~~~~~ll~~ 267 (271)
.+++++|.+
T Consensus 197 ~~~~~~Ll~ 205 (236)
T 1ikn_D 197 TRIQQQLGQ 205 (236)
T ss_dssp HHHHHHHHT
T ss_pred hHHHHHHHH
Confidence 666666554
No 56
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=5.7e-31 Score=207.27 Aligned_cols=164 Identities=23% Similarity=0.239 Sum_probs=143.5
Q ss_pred CCCCCCChHHHHHHhCCHHHHHHHHHCCCCC-----CchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhc
Q psy8012 9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQI-----DKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSN 83 (271)
Q Consensus 9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~-----~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~ 83 (271)
.|.+|.||||+|+..|+.+++++|++.|+++ +.++..|.|| ||+|+..|+.+++++|+++|
T Consensus 33 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g---------- 98 (232)
T 2rfa_A 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA----LHIAVINQNVNLVRALLARG---------- 98 (232)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH----HHHHHHTTCHHHHHHHHHTT----------
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH----HHHHHHcCCHHHHHHHHhCC----------
Confidence 4788999999999999999999999999886 6778899999 77777777776666666554
Q ss_pred ChHHHHHHHhcCCCCccC-------------CCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC
Q psy8012 84 KYDEVKKNIEDGACINVS-------------SERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150 (271)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~-------------~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~ 150 (271)
++++.. +..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+.. +
T Consensus 99 ------------~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~-~ 165 (232)
T 2rfa_A 99 ------------ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ-P 165 (232)
T ss_dssp ------------CCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTC-S
T ss_pred ------------CCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-C
Confidence 444444 34799999999999999999999999999999999999999999998 9
Q ss_pred CHHHH----HHHHhCCCCc------cccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHH
Q psy8012 151 DDSIV----RKLLRHGAYY------NVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFK 200 (271)
Q Consensus 151 ~~~~~----~~Ll~~g~~~------~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~ 200 (271)
+.+++ ++|+++|+++ +.++. .|.||||+| ..|+.+++++|+++|.....
T Consensus 166 ~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~-~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 166 NKTFACQMYNLLLSYDGGDHLKSLELVPNN-QGLTPFKLAGVEGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp CHHHHHHHHHHHHHTTCSCSSCCGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred ChHHHHHHHHHHHhcCCchhhhhhhccCCC-CCCCHHHHHHHcCCHHHHHHHHhcCccchh
Confidence 99888 9999999988 57787 899999999 99999999999999988653
No 57
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.2e-35 Score=229.54 Aligned_cols=157 Identities=22% Similarity=0.161 Sum_probs=77.1
Q ss_pred CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCC
Q psy8012 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 174 (271)
Q Consensus 95 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~ 174 (271)
|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|++.|++++..++..|.
T Consensus 44 g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~g~ 122 (229)
T 2vge_A 44 MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC-NDTVICMALVQHGAAIFATTLSDGA 122 (229)
T ss_dssp SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCCCSSTTC
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccCCCCC
Confidence 334444444444444444444444444444444444444444444444444444 4444444444444444444322444
Q ss_pred CHHHHH---hcCCchHHHHHHhchhhHHHHhhcCCcccccc--hHHHHHHHhhccCCCCCCCCCCcccccccccCCCchH
Q psy8012 175 TPLLHA---GKGAREVNTVLLYFIHEIFKLMANNDTTILDR--LDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETI 249 (271)
Q Consensus 175 tpL~~A---~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tp 249 (271)
||||+| ..++.+++++|+++|++++..+..+.+..+.. ....+.|+..|++ ..++.+|..|+||
T Consensus 123 tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~-----------~~~~~~d~~G~Tp 191 (229)
T 2vge_A 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGES-----------VTVLRRDGPEETD 191 (229)
T ss_dssp CTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCE-----------EEEEESSCTTCSS
T ss_pred CHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCcccccc-----------ccccccCCCcccH
Confidence 444443 33444444444444444443322221111110 0111222222222 1156789999999
Q ss_pred HHHHHHhCCCcHHH
Q psy8012 250 LDIAKKRGFPLLEE 263 (271)
Q Consensus 250 l~~A~~~~~~~~~~ 263 (271)
||+|+++|+.++++
T Consensus 192 L~~A~~~g~~~~v~ 205 (229)
T 2vge_A 192 WWWAALHGQEGYVP 205 (229)
T ss_dssp EEEEEETTEEEEEE
T ss_pred HHHHHHcCCcceee
Confidence 99999999998764
No 58
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.3e-31 Score=214.06 Aligned_cols=166 Identities=22% Similarity=0.200 Sum_probs=144.5
Q ss_pred CCCCCCCChHHHHHHh---CCHHHHHHHHHCCCCCCc-----------hhhcccchHHHHHHHHHHHHhHHHHHHHHHcC
Q psy8012 8 YVPYEDHKPIAIAIQI---GDPQIVKELQNHGAQIDK-----------EIYSKNKAAARIAHSALELEERKAINDLLRLN 73 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~~~-----------~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g 73 (271)
..|.+|.||||+|+.. |+.+++++|++.|++++. ++..|.|| ||+|+..|+.+++
T Consensus 38 ~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~----L~~A~~~g~~~~v------- 106 (256)
T 2etb_A 38 TEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSA----LHIAIEKRSLQCV------- 106 (256)
T ss_dssp SBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCH----HHHHHHTTCHHHH-------
T ss_pred cCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCH----HHHHHHcCCHHHH-------
Confidence 3588999999999999 999999999999887663 34679999 6666655555555
Q ss_pred cHHHHHHHhcChHHHHHHHhcCCCCccCCCC-------------CCcHHHHHHHhCCHHHHHHHHH---CCCCccccCCC
Q psy8012 74 LDFLKNVRSNKYDEVKKNIEDGACINVSSER-------------CGSALIYAAWKGYEEIVDLLLD---NGADVNFKSAT 137 (271)
Q Consensus 74 ~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~-------------g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~ 137 (271)
++|++.|++++..+.. |.||||+|+..|+.+++++|++ .|++++..|..
T Consensus 107 ---------------~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~ 171 (256)
T 2etb_A 107 ---------------KLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL 171 (256)
T ss_dssp ---------------HHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT
T ss_pred ---------------HHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCC
Confidence 4555566777777765 9999999999999999999999 99999999999
Q ss_pred CCcHHHHHHH--hCCCHH-------HHHHHHhCCCCc-------cccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHH
Q psy8012 138 GFTALHMACR--FHDDDS-------IVRKLLRHGAYY-------NVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFK 200 (271)
Q Consensus 138 ~~t~l~~a~~--~~~~~~-------~~~~Ll~~g~~~-------~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~ 200 (271)
|+||||+|+. . ++.+ ++++|+++|+++ +.++. .|.||||+| ..|+.+++++|+++|++...
T Consensus 172 g~TpLh~A~~~~~-~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 172 GNTVLHALVMIAD-NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH-QGLTPLKLAAKEGKIEIFRHILQREFSGAA 249 (256)
T ss_dssp SCCHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHccc-CCchhhHHHHHHHHHHHHcCCCcccccccccccCC-CCCCHHHHHHHhCCHHHHHHHHhCCCCCCC
Confidence 9999999998 5 7888 999999999999 88998 999999999 99999999999999998764
Q ss_pred H
Q psy8012 201 L 201 (271)
Q Consensus 201 ~ 201 (271)
.
T Consensus 250 ~ 250 (256)
T 2etb_A 250 A 250 (256)
T ss_dssp H
T ss_pred c
Confidence 3
No 59
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.8e-31 Score=203.17 Aligned_cols=162 Identities=25% Similarity=0.212 Sum_probs=145.2
Q ss_pred CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCH
Q psy8012 39 IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE 118 (271)
Q Consensus 39 ~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~ 118 (271)
++.++..|.|| ||+|+..|+.++ +++|++.+++++..+..|.||||+|+..|+.
T Consensus 28 ~n~~d~~g~t~----L~~A~~~g~~~~----------------------v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 81 (192)
T 2rfm_A 28 RNYRDSYNRTP----LMVACMLGMENA----------------------IDKLVENFDKLEDKDIEGSTALIWAVKNNRL 81 (192)
T ss_dssp HTCCCTTCCCH----HHHHHHHTCGGG----------------------HHHHHHHHCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HhCcCCCCCCH----HHHHHHcCCHHH----------------------HHHHHHhccccccccccCccHHHHHHHcCCH
Confidence 45678889999 666655555544 5555556778889999999999999999999
Q ss_pred HHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012 119 EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE 197 (271)
Q Consensus 119 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~ 197 (271)
+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++
T Consensus 82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 159 (192)
T 2rfm_A 82 GIAEKLLSKGSNVNTKDFSGKTPLMWSIIF-GYSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLLELGAD 159 (192)
T ss_dssp HHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 999999999999999999999999999999 999999999999999999998 999999999 99999999999999988
Q ss_pred HHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012 198 IFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA 269 (271)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~ 269 (271)
++ .+|..|.||+|+|+..|+.+++++|.+..
T Consensus 160 ~~-----------------------------------------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 160 IS-----------------------------------------ARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp TT-----------------------------------------CBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC-----------------------------------------CcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 54 78999999999999999999999998753
No 60
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=2.3e-30 Score=202.51 Aligned_cols=163 Identities=21% Similarity=0.201 Sum_probs=148.9
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCC-CCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChH
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGA-QIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYD 86 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~ 86 (271)
..+..|.||||+|+..|+.+++++|++.+. +++..+..|.|| ||+|+..++.+++++|
T Consensus 53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~~~~L----------------- 111 (223)
T 2f8y_A 53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP----LILAARLAVEGMLEDL----------------- 111 (223)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCH----HHHHHHHTCHHHHHHH-----------------
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcH----HHHHHHhCcHHHHHHH-----------------
Confidence 357789999999999999999999999987 899999999999 7777666666555554
Q ss_pred HHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcc
Q psy8012 87 EVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166 (271)
Q Consensus 87 ~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~ 166 (271)
++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++
T Consensus 112 -----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~ 185 (223)
T 2f8y_A 112 -----INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRD 185 (223)
T ss_dssp -----HHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTT
T ss_pred -----HHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHc-CCHHHHHHHHHcCCCCc
Confidence 556778899999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ccCCCCCCCHHHHH-hcCCchHHHHHHhchhhH
Q psy8012 167 VVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEI 198 (271)
Q Consensus 167 ~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~ 198 (271)
.++. .|.|||++| ..++.+++++|+++|+..
T Consensus 186 ~~~~-~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 186 ITDH-MDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp CCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred cccc-cCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 9998 899999999 999999999999999864
No 61
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=5.9e-31 Score=199.14 Aligned_cols=163 Identities=22% Similarity=0.226 Sum_probs=144.2
Q ss_pred CCCCCChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHH
Q psy8012 10 PYEDHKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEV 88 (271)
Q Consensus 10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~ 88 (271)
+.++.++||.||+.|+.+++++|++. +.+++..+..|.|| ||+|+..++.++ +
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------v 55 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSP----LHWACREGRSAV----------------------V 55 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCH----HHHHHHTTCHHH----------------------H
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCH----HHHHHHcCcHHH----------------------H
Confidence 35688999999999999999999998 67899999999999 555555544444 5
Q ss_pred HHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcccc
Q psy8012 89 KKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 168 (271)
Q Consensus 89 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~ 168 (271)
++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++.+
T Consensus 56 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~ 134 (179)
T 3f6q_A 56 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQDQVAEDLVANGALVSIC 134 (179)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSSBC
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCcchh
Confidence 556667888999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CCCCCCCHHHHH-hcCCchHHHHHHhchhhHHH
Q psy8012 169 DGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFK 200 (271)
Q Consensus 169 ~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~ 200 (271)
+. .|.|||++| ..++.+++++|+++|++++.
T Consensus 135 ~~-~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 135 NK-YGEMPVDKAKAPLRELLRERAEKMGQNLNR 166 (179)
T ss_dssp CT-TSCCGGGGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred cc-CCCCcHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 98 999999999 99999999999999998763
No 62
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=5.6e-31 Score=196.58 Aligned_cols=160 Identities=24% Similarity=0.230 Sum_probs=140.4
Q ss_pred CCCCCCChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH
Q psy8012 9 VPYEDHKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE 87 (271)
Q Consensus 9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~ 87 (271)
.+.+|.||||.|++.|+.+++++|++. +.+++..+..|.|| ||+|+..++.++
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~---------------------- 57 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP----LHFAAGYNRVSV---------------------- 57 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCH----HHHHHHTTCHHH----------------------
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCH----HHHHHHcChHHH----------------------
Confidence 467789999999999999999999985 56788888899999 555555554444
Q ss_pred HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccc
Q psy8012 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 167 (271)
Q Consensus 88 ~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~ 167 (271)
+++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.
T Consensus 58 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~ 136 (165)
T 3twr_A 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK-GKYEICKLLLQHGADPTK 136 (165)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTC
T ss_pred HHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcc
Confidence 5555667788999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred cCCCCCCCHHHHHhcCCchHHHHHHhchh
Q psy8012 168 VDGKTGKTPLLHAGKGAREVNTVLLYFIH 196 (271)
Q Consensus 168 ~~~~~g~tpL~~A~~~~~~~~~~L~~~g~ 196 (271)
++. .|.||||+|..++.+++++|++.|+
T Consensus 137 ~~~-~g~t~l~~a~~~~~~i~~~L~~~gA 164 (165)
T 3twr_A 137 KNR-DGNTPLDLVKDGDTDIQDLLRGDAA 164 (165)
T ss_dssp CCT-TSCCTGGGSCTTCHHHHHHHHTC--
T ss_pred cCC-CCCChhHhHhcCChHHHHHHhhccc
Confidence 998 9999999993389999999999886
No 63
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=210.16 Aligned_cols=160 Identities=23% Similarity=0.297 Sum_probs=145.7
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCC-CCCchhhcccchHHHHHHHHH-----HHHhHHHHHHHHHcCcHHHHHHH
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGA-QIDKEIYSKNKAAARIAHSAL-----ELEERKAINDLLRLNLDFLKNVR 81 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~~~~~l~~A~-----~~~~~~~~~~L~~~g~~~l~~a~ 81 (271)
..|.+|.||||+||..|+.+++++|++.|+ +++..+..|.|| ||+|+ ..++.++
T Consensus 106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tp----L~~a~~~~~~~~~~~~~---------------- 165 (276)
T 4hbd_A 106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSP----IMLTALATLKTQDDIET---------------- 165 (276)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCH----HHHGGGCCCCSHHHHHH----------------
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCH----HHHHHHHHhhhhhhHHH----------------
Confidence 457889999999999999999999999998 999999999999 77776 4455544
Q ss_pred hcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh-
Q psy8012 82 SNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR- 160 (271)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~- 160 (271)
+++|++.|...+..+..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+.. ++.+++++|++
T Consensus 166 ------v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~ 238 (276)
T 4hbd_A 166 ------VLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEH-GHKEIAGLLLAV 238 (276)
T ss_dssp ------HHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHTS
T ss_pred ------HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC-CCHHHHHHHHhc
Confidence 4555556777788888999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhch
Q psy8012 161 HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFI 195 (271)
Q Consensus 161 ~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g 195 (271)
.|++++.++. .|.||||+| ..|+.+++++|++++
T Consensus 239 ~gad~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 239 PSCDISLTDR-DGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCCCcCcCC-CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 8999999998 999999999 999999999999874
No 64
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=1.5e-30 Score=191.95 Aligned_cols=150 Identities=25% Similarity=0.303 Sum_probs=136.5
Q ss_pred CCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHH
Q psy8012 13 DHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNI 92 (271)
Q Consensus 13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll 92 (271)
..|+||.|++.|+.+++++|+++|++++ .+..|.|| ||+|+..|+.+++++| +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~----L~~A~~~~~~~~v~~L----------------------l 54 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSP----LHLAAQYGHFSTTEVL----------------------L 54 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCH----HHHHHHHTCHHHHHHH----------------------H
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCH----HHHHHHcCCHHHHHHH----------------------H
Confidence 4689999999999999999999999887 57889999 7777666666555555 5
Q ss_pred hcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCC
Q psy8012 93 EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 172 (271)
Q Consensus 93 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~ 172 (271)
+.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .
T Consensus 55 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~-~ 132 (153)
T 1awc_B 55 RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLIKYGADVHTQSK-F 132 (153)
T ss_dssp TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-T
T ss_pred HcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCccccCC-C
Confidence 56778899999999999999999999999999999999999999999999999998 999999999999999999998 9
Q ss_pred CCCHHHHH-hcCCchHHHHH
Q psy8012 173 GKTPLLHA-GKGAREVNTVL 191 (271)
Q Consensus 173 g~tpL~~A-~~~~~~~~~~L 191 (271)
|.|||++| ..++.+++++|
T Consensus 133 g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 133 CKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp SCCHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHh
Confidence 99999999 99999999987
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=2.7e-30 Score=193.21 Aligned_cols=149 Identities=27% Similarity=0.316 Sum_probs=135.4
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV 155 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 155 (271)
||.|+..++.+ +++|++.+.+++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v 85 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK-GYTDIV 85 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-CCHHHH
Confidence 45555555555 5666667788999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012 156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN 234 (271)
Q Consensus 156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 234 (271)
++|+++|++++..+. .|.||||+| ..++.+++++|+++|++++
T Consensus 86 ~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------------------------------- 129 (167)
T 3v31_A 86 KMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGADPT----------------------------------- 129 (167)
T ss_dssp HHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------------
T ss_pred HHHHHCCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------------------------------
Confidence 999999999999998 899999999 9999999999999998854
Q ss_pred cccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 235 FSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
.+|..|.||+|+|++.|+.+++++|.+.
T Consensus 130 ------~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 130 ------IETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp ------CCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred ------CcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 7899999999999999999999999874
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=3.2e-30 Score=193.34 Aligned_cols=149 Identities=36% Similarity=0.426 Sum_probs=135.3
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV 155 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 155 (271)
++.|+..++.+ +++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++
T Consensus 18 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~ 96 (169)
T 2y1l_E 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF-GHLEIV 96 (169)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHH
Confidence 45555555555 5666667888999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012 156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN 234 (271)
Q Consensus 156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 234 (271)
++|+++|++++..+. .|.||||+| ..++.+++++|+++|++++
T Consensus 97 ~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------------------------------- 140 (169)
T 2y1l_E 97 EVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLLKNGADVN----------------------------------- 140 (169)
T ss_dssp HHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------------
T ss_pred HHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------------------------------
Confidence 999999999999998 899999999 9999999999999998853
Q ss_pred cccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 235 FSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
.+|..|.||+|+|++.|+.+++++|.+.
T Consensus 141 ------~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 141 ------AQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred ------CcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 7899999999999999999999999863
No 67
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=1.7e-31 Score=211.35 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=114.5
Q ss_pred CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHH
Q psy8012 10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVK 89 (271)
Q Consensus 10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~ 89 (271)
+..|.||||.|+..|+.+.++.|+++|++++.. ..|.|| ||.|+..|+.+++ +
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~----L~~A~~~g~~~~v----------------------~ 54 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLAL----LLDSSLEGEFDLV----------------------Q 54 (239)
T ss_dssp ------------------------------------CHHH----HHHHHHHTCHHHH----------------------H
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHH----HHHHHHcCCHHHH----------------------H
Confidence 456999999999999999999999999999864 678899 6666666555555 4
Q ss_pred HHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccC
Q psy8012 90 KNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD 169 (271)
Q Consensus 90 ~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~ 169 (271)
+|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+.. ++.+++++|+++|++++..+
T Consensus 55 ~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~~ 133 (239)
T 1ycs_B 55 RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQVCKFLVESGAAVFAMT 133 (239)
T ss_dssp HHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcceec
Confidence 45556788999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCCCC-CHHHHH---hcCCchHHHHHHhchhhHHHHhh
Q psy8012 170 GKTGK-TPLLHA---GKGAREVNTVLLYFIHEIFKLMA 203 (271)
Q Consensus 170 ~~~g~-tpL~~A---~~~~~~~~~~L~~~g~~~~~~~~ 203 (271)
. .|. ||||+| ..|+.+++++|+++|++++....
T Consensus 134 ~-~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~ 170 (239)
T 1ycs_B 134 Y-SDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNK 170 (239)
T ss_dssp S-SSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGG
T ss_pred C-CCCcchHHHHHHhhhccHHHHHHHHHhhhccccccc
Confidence 8 565 999998 56889999999999999875543
No 68
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=6.8e-30 Score=188.86 Aligned_cols=151 Identities=25% Similarity=0.265 Sum_probs=138.7
Q ss_pred CCChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-HHH
Q psy8012 13 DHKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-VKK 90 (271)
Q Consensus 13 g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~~~ 90 (271)
|.||||.|++.|+.+++++|++. +.+++..+..|.|| ||+ +..++.+ +++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~---------------------------L~~-~~~~~~~~v~~ 53 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA---------------------------LQV-MMFGSTAIALE 53 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCH---------------------------HHH-SCTTCHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcH---------------------------HHH-HHcCCHHHHHH
Confidence 56899999999999999999998 45899999999999 555 5555555 666
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCC
Q psy8012 91 NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG 170 (271)
Q Consensus 91 ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~ 170 (271)
|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|++. ++++.++.
T Consensus 54 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~-~~~~~~~~ 131 (156)
T 1bd8_A 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE-GHTAVVSFLAAE-SDLHRRDA 131 (156)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHTT-SCTTCCCT
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh-ChHHHHHHHHhc-cCCCCcCC
Confidence 6777889999999999999999999999999999999999999999999999999999 999999999999 99999998
Q ss_pred CCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012 171 KTGKTPLLHA-GKGAREVNTVLLYF 194 (271)
Q Consensus 171 ~~g~tpL~~A-~~~~~~~~~~L~~~ 194 (271)
.|.||||+| ..++.+++++|+++
T Consensus 132 -~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 132 -RGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp -TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred -CCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999 99999999999875
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=4.5e-30 Score=189.31 Aligned_cols=146 Identities=27% Similarity=0.287 Sum_probs=128.7
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV 155 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 155 (271)
|+.|+..++.+ +++|++.|.+++ .+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus 6 L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v 83 (153)
T 1awc_B 6 LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-GHANIV 83 (153)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-ChHHHH
Confidence 34444444444 455555566655 577899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012 156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN 234 (271)
Q Consensus 156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 234 (271)
++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++
T Consensus 84 ~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------------------------------- 127 (153)
T 1awc_B 84 EVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYGADVH----------------------------------- 127 (153)
T ss_dssp HHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------------
T ss_pred HHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----------------------------------
Confidence 999999999999998 999999999 9999999999999998854
Q ss_pred cccccccccCCCchHHHHHHHhCCCcHHHHHH
Q psy8012 235 FSLLKVTKNDAGETILDIAKKRGFPLLEELEK 266 (271)
Q Consensus 235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~ 266 (271)
.+|..|.||+|+|+++|+.+++++|+
T Consensus 128 ------~~~~~g~t~l~~A~~~~~~~i~~~L~ 153 (153)
T 1awc_B 128 ------TQSKFCKTAFDISIDNGNEDLAEILQ 153 (153)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred ------ccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence 78999999999999999999999984
No 70
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.6e-30 Score=209.75 Aligned_cols=164 Identities=24% Similarity=0.262 Sum_probs=139.2
Q ss_pred CCCCCCCChHHHHHHh---CCHHHHHHHHHCCCCC-------C----chhhcccchHHHHHHHHHHHHhHHHHHHHHHcC
Q psy8012 8 YVPYEDHKPIAIAIQI---GDPQIVKELQNHGAQI-------D----KEIYSKNKAAARIAHSALELEERKAINDLLRLN 73 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~-------~----~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g 73 (271)
..+..|.||||+|+.. |+.+++++|+++|+++ + ..+..|.|| ||+|+..|+.++++
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tp----L~~A~~~g~~~~v~------ 118 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTA----LHIAIERRNMTLVT------ 118 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCH----HHHHHHTTCHHHHH------
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCH----HHHHHHcCCHHHHH------
Confidence 4578999999999987 9999999999998653 2 256689999 66666555555554
Q ss_pred cHHHHHHHhcChHHHHHHHhcCCCCccCCC--------------CCCcHHHHHHHhCCHHHHHHHHH---CCCCccccCC
Q psy8012 74 LDFLKNVRSNKYDEVKKNIEDGACINVSSE--------------RCGSALIYAAWKGYEEIVDLLLD---NGADVNFKSA 136 (271)
Q Consensus 74 ~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~--------------~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~ 136 (271)
+|++.|++++..+. .|.||||+|+..|+.+++++|++ .|++++..+.
T Consensus 119 ----------------~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~ 182 (273)
T 2pnn_A 119 ----------------LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182 (273)
T ss_dssp ----------------HHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT
T ss_pred ----------------HHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCC
Confidence 45556677777775 79999999999999999999999 9999999999
Q ss_pred CCCcHHHHHHHhCCC---------HHHHHHHHhCCCCcc-------ccCCCCCCCHHHHH-hcCCchHHHHHHhchh-hH
Q psy8012 137 TGFTALHMACRFHDD---------DSIVRKLLRHGAYYN-------VVDGKTGKTPLLHA-GKGAREVNTVLLYFIH-EI 198 (271)
Q Consensus 137 ~~~t~l~~a~~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~-~~ 198 (271)
.|+||||+|+.. ++ .+++++|+++|++++ .++. .|.||||+| ..|+.+++++|+++|+ +.
T Consensus 183 ~g~tpLh~A~~~-~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp 260 (273)
T 2pnn_A 183 VGNTVLHALVEV-ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR-KGLTPLALAASSGKIGVLAYILQREIHEP 260 (273)
T ss_dssp TSCCHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred CCCcHHHHHHHc-cCcchhHHHHHHHHHHHHHHhhhhcccccccccccCC-CCCCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence 999999999998 77 789999999999997 4777 899999999 9999999999999999 44
Q ss_pred H
Q psy8012 199 F 199 (271)
Q Consensus 199 ~ 199 (271)
.
T Consensus 261 ~ 261 (273)
T 2pnn_A 261 E 261 (273)
T ss_dssp -
T ss_pred h
Confidence 3
No 71
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=2.4e-30 Score=207.14 Aligned_cols=162 Identities=21% Similarity=0.226 Sum_probs=140.4
Q ss_pred CCCCCChHHHHH---HhCCHHHHHHHHHCCCC-----------CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcH
Q psy8012 10 PYEDHKPIAIAI---QIGDPQIVKELQNHGAQ-----------IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75 (271)
Q Consensus 10 ~~~g~t~L~~A~---~~g~~~~~~~Ll~~g~~-----------~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~ 75 (271)
+..|.||||+|+ +.|+.+++++|++.|++ ++..+..|.|| ||+|+..|+.++
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~----L~~A~~~g~~~~---------- 108 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTA----LHIAIERRCKHY---------- 108 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCH----HHHHHHTTCHHH----------
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCH----HHHHHHcCCHHH----------
Confidence 477999999999 77999999999998744 44556689999 666655555555
Q ss_pred HHHHHHhcChHHHHHHHhcCCCCccCC--------------CCCCcHHHHHHHhCCHHHHHHHHH---CCCCccccCCCC
Q psy8012 76 FLKNVRSNKYDEVKKNIEDGACINVSS--------------ERCGSALIYAAWKGYEEIVDLLLD---NGADVNFKSATG 138 (271)
Q Consensus 76 ~l~~a~~~~~~~~~~ll~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~ 138 (271)
+++|++.|++++..+ ..|.||||+|+..|+.+++++|++ .|++++..|..|
T Consensus 109 ------------v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g 176 (260)
T 3jxi_A 109 ------------VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRG 176 (260)
T ss_dssp ------------HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTS
T ss_pred ------------HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCC
Confidence 455555677888877 689999999999999999999999 999999999999
Q ss_pred CcHHHHHHHhCCC---------HHHHHHHHhCCCCc-------cccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012 139 FTALHMACRFHDD---------DSIVRKLLRHGAYY-------NVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIF 199 (271)
Q Consensus 139 ~t~l~~a~~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~ 199 (271)
+||||+|+.. ++ .+++++|+++|+++ +..+. .|.||||+| ..|+.+++++|+++|++..
T Consensus 177 ~TpLh~A~~~-~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 177 NTVLHALVAI-ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN-DGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp CCHHHHHHHH-CCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHh-ccCchhHHHHHHHHHHHHHHhCcccccccchhhcccC-CCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 9999999987 66 68999999999999 67888 999999999 9999999999999999875
No 72
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=5.4e-30 Score=190.57 Aligned_cols=149 Identities=26% Similarity=0.269 Sum_probs=135.0
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV 155 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 155 (271)
|+.|+..++.+ +++|++.|++++..+..|.||||+|+. |+.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus 9 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v 86 (162)
T 1ihb_A 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTL 86 (162)
T ss_dssp HHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHH
Confidence 55555555555 666677788899999999999999999 999999999999999999999999999999999 999999
Q ss_pred HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012 156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN 234 (271)
Q Consensus 156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 234 (271)
++|+++|++++.++. .|.||||+| ..++.+++++|+++|++.
T Consensus 87 ~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------------------ 129 (162)
T 1ihb_A 87 QTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASN------------------------------------ 129 (162)
T ss_dssp HHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCC------------------------------------
T ss_pred HHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHccCCC------------------------------------
Confidence 999999999999998 999999999 999999999999998873
Q ss_pred cccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 235 FSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
++.+|..|.||||+|++.|+.+++++|.+.
T Consensus 130 ----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 130 ----VGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ----CCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 347899999999999999999999999764
No 73
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=3e-29 Score=188.42 Aligned_cols=149 Identities=27% Similarity=0.304 Sum_probs=132.5
Q ss_pred HHHHHhcChHH-HHHHHhcCCC-CccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~ 154 (271)
|+.|+..++.+ ++.|++.+.. ++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.++
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~ 84 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDI 84 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-CCHHH
Confidence 44444444444 5555555555 788899999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012 155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN 233 (271)
Q Consensus 155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 233 (271)
+++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++
T Consensus 85 v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------------------------- 129 (172)
T 3v30_A 85 VGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLARGADLT---------------------------------- 129 (172)
T ss_dssp HHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------------------------------
T ss_pred HHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------------------------------
Confidence 9999999999999998 999999999 9999999999999998854
Q ss_pred CcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
.+|..|.||||+|++.|+.+++++|.+.
T Consensus 130 -------~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 130 -------TEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp -------CCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred -------ccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 7899999999999999999999999874
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.2e-29 Score=189.36 Aligned_cols=158 Identities=28% Similarity=0.353 Sum_probs=139.6
Q ss_pred hhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHH
Q psy8012 43 IYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVD 122 (271)
Q Consensus 43 ~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~ 122 (271)
+..|.+| |+.|+..|+.++++.|++. .+.+++..+..|.||||+|+..|+.++++
T Consensus 5 ~~~~~~~----l~~A~~~g~~~~v~~ll~~---------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 59 (165)
T 3twr_A 5 NSEADRQ----LLEAAKAGDVETVKKLCTV---------------------QSVNCRDIEGRQSTPLHFAAGYNRVSVVE 59 (165)
T ss_dssp -CHHHHH----HHHHHHHTCHHHHHHHCCT---------------------TTTTCCCTTTTCCCHHHHHHHTTCHHHHH
T ss_pred cchhhHH----HHHHHHhCCHHHHHHHHHc---------------------CCCCccccccCCCCHHHHHHHcChHHHHH
Confidence 4567788 7777777777777666553 34566777888999999999999999999
Q ss_pred HHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHH
Q psy8012 123 LLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKL 201 (271)
Q Consensus 123 ~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~ 201 (271)
+|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++
T Consensus 60 ~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-- 135 (165)
T 3twr_A 60 YLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGADPT-- 135 (165)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTT--
T ss_pred HHHhcCCCCCccCCCCCCHHHHHHHc-CcHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCc--
Confidence 99999999999999999999999998 999999999999999999998 999999999 9999999999999998854
Q ss_pred hhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012 202 MANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA 269 (271)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~ 269 (271)
.+|..|.||+|+|++ |+.+++++|.+..
T Consensus 136 ---------------------------------------~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 136 ---------------------------------------KKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp ---------------------------------------CCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred ---------------------------------------ccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 789999999999877 8999999998753
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=4.9e-29 Score=188.57 Aligned_cols=156 Identities=26% Similarity=0.235 Sum_probs=136.9
Q ss_pred cccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHH
Q psy8012 45 SKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124 (271)
Q Consensus 45 ~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L 124 (271)
.+.++ |+.|+..|+.+++++|++.+ +.+++..+..|.||||+|+..|+.+++++|
T Consensus 4 ~~~~~----l~~A~~~g~~~~v~~ll~~~---------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 58 (179)
T 3f6q_A 4 EFMDD----IFTQCREGNAVAVRLWLDNT---------------------ENDLNQGDDHGFSPLHWACREGRSAVVEML 58 (179)
T ss_dssp ---CC----HHHHHHHTCHHHHHHHHHCT---------------------TSCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHH----HHHHHHcCCHHHHHHHHhcC---------------------cccccccCCCCCCHHHHHHHcCcHHHHHHH
Confidence 45666 66666666666665555442 567888999999999999999999999999
Q ss_pred HHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhh
Q psy8012 125 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMA 203 (271)
Q Consensus 125 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~ 203 (271)
++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|+++
T Consensus 59 l~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~----- 131 (179)
T 3f6q_A 59 IMRGARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGALV----- 131 (179)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCS-----
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCc-----
Confidence 999999999999999999999998 999999999999999999998 999999999 999999999999999884
Q ss_pred cCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 204 NNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
+.+|..|.||+++|++.++.+++++|.+.
T Consensus 132 ------------------------------------~~~~~~g~tpl~~A~~~~~~~~~~~L~~~ 160 (179)
T 3f6q_A 132 ------------------------------------SICNKYGEMPVDKAKAPLRELLRERAEKM 160 (179)
T ss_dssp ------------------------------------SBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred ------------------------------------chhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999998874
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=1.1e-28 Score=182.36 Aligned_cols=146 Identities=25% Similarity=0.267 Sum_probs=128.6
Q ss_pred HHHHHhcChHH-HHHHHhc-CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIED-GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~ 154 (271)
|+.|+..++.+ ++.|++. +.+++..+..|.||||+ +..|+.+++++|++.|++++..+..|+||||+|+.. ++.++
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~ 83 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDT 83 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHH
T ss_pred HHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHH
Confidence 33344444444 4444444 45788899999999999 999999999999999999999999999999999998 99999
Q ss_pred HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012 155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN 233 (271)
Q Consensus 155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 233 (271)
+++|+++|++++.++. .|.||||+| ..++.+++++|+++ ++
T Consensus 84 v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~-~~------------------------------------ 125 (156)
T 1bd8_A 84 LKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE-SD------------------------------------ 125 (156)
T ss_dssp HHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT-SC------------------------------------
T ss_pred HHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHhc-cC------------------------------------
Confidence 9999999999999998 899999999 99999999999988 65
Q ss_pred CcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012 234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK 267 (271)
Q Consensus 234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~ 267 (271)
++.+|..|.||||+|++.|+.+++++|.+
T Consensus 126 -----~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 126 -----LHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp -----TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred -----CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 34789999999999999999999999876
No 77
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=8.8e-31 Score=219.38 Aligned_cols=234 Identities=13% Similarity=0.036 Sum_probs=148.6
Q ss_pred ChHHHHHH-hCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc------H-------HHHHH
Q psy8012 15 KPIAIAIQ-IGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL------D-------FLKNV 80 (271)
Q Consensus 15 t~L~~A~~-~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~------~-------~l~~a 80 (271)
+++++|.. .++.+++++++++|.+. .|| ||+|+..|+.+++++|++.|+ . +||+|
T Consensus 67 l~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~----Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A 135 (376)
T 2aja_A 67 LCLYYAHYNRNAKQLWSDAHKKGIKS-------EVI----CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 135 (376)
T ss_dssp HHHHHHHTTTTCTTHHHHHHHHTCCH-------HHH----HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCCc-------CCH----HHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH
Confidence 34555554 35566666666655432 355 666666666666666666654 2 36777
Q ss_pred HhcChHH-HHHHHhcCCC---CccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccc--cCCCCCcHHHHHH-HhCCCHH
Q psy8012 81 RSNKYDE-VKKNIEDGAC---INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNF--KSATGFTALHMAC-RFHDDDS 153 (271)
Q Consensus 81 ~~~~~~~-~~~ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~~t~l~~a~-~~~~~~~ 153 (271)
+..|+.+ +++|++.|++ .+..+.+ .||||+|+..|+.+++++|+++|++++. .+..|+||||+|+ .. |+.+
T Consensus 136 a~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~-G~~e 213 (376)
T 2aja_A 136 AENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR-GHHN 213 (376)
T ss_dssp HHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT-CCHH
T ss_pred HHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHC-CCHH
Confidence 7777777 7777777754 2222223 7889999999999999998888888776 7777888999888 87 8888
Q ss_pred HHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCccc-ccc------------hHHHHHH
Q psy8012 154 IVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTI-LDR------------LDEMKSL 219 (271)
Q Consensus 154 ~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~-~~~------------~~~~~~l 219 (271)
++++|++.|+ .|.||||+| ..|+.+++++|+++|++++..+....... ... ...++.|
T Consensus 214 iv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~l 285 (376)
T 2aja_A 214 VINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL 285 (376)
T ss_dssp HHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHH
Confidence 8998888663 367888888 88888888999888888765543221111 011 1122333
Q ss_pred HhhccCCCC-------CCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012 220 ILEGTKEFG-------PGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA 269 (271)
Q Consensus 220 ~~~~~~~~~-------~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~ 269 (271)
+..+..... .....+.-.........+.|||++|++.|+.+++++|.+.+
T Consensus 286 i~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~ 342 (376)
T 2aja_A 286 IRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 342 (376)
T ss_dssp HHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred HHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh
Confidence 333321100 00000000001234456789999999999999999997654
No 78
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=2.1e-28 Score=180.98 Aligned_cols=143 Identities=15% Similarity=0.074 Sum_probs=113.3
Q ss_pred CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH
Q psy8012 8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE 87 (271)
Q Consensus 8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~ 87 (271)
..+..|.||||+|++.|+.+++++|+++|++++.++..|.|| | |+|+ .++.+
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L-----------------------~~A~-~~~~~ 58 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRP----I-----------------------QVMM-MGSAR 58 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCT----T-----------------------TSSC-TTCHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH----H-----------------------HHHH-cCCHH
Confidence 446789999999999999999999999999999999999999 4 4443 44555
Q ss_pred -HHHHHhcCCCCccCCCCCCc-HHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCc
Q psy8012 88 -VKKNIEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165 (271)
Q Consensus 88 -~~~ll~~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~ 165 (271)
+++|++.|++++.++..|.| |||+|+..|+.+++++|+++|++++..+..|+||||+|+.. ++.+++++|+++|+++
T Consensus 59 ~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~v~~Ll~~ga~~ 137 (156)
T 1bi7_B 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL-GHRDVARYLRAAAGGT 137 (156)
T ss_dssp HHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHSSCC---
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh-CHHHHHHHHHHcCCCC
Confidence 67777788899999999999 99999999999999999999999999999999999999999 9999999999999999
Q ss_pred cccCCCCCCCHHHHH
Q psy8012 166 NVVDGKTGKTPLLHA 180 (271)
Q Consensus 166 ~~~~~~~g~tpL~~A 180 (271)
+.++. .|.||.+.+
T Consensus 138 ~~~~~-~g~t~~~~~ 151 (156)
T 1bi7_B 138 RGSNH-ARIDAAEGP 151 (156)
T ss_dssp ---------------
T ss_pred CccCc-CcCcccccC
Confidence 99998 899998643
No 79
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=6.4e-28 Score=174.24 Aligned_cols=135 Identities=18% Similarity=0.144 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHH
Q psy8012 2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVR 81 (271)
Q Consensus 2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~ 81 (271)
|...-...+..|.||||+|++.|+.+++++|+++|++++.++..|.|| ||+|+. ++.++
T Consensus 1 G~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~-~~~~~---------------- 59 (136)
T 1d9s_A 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRP----IQVMMM-GSAQV---------------- 59 (136)
T ss_dssp CCCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTT----TTTSTT-SCHHH----------------
T ss_pred CCCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCH----HHHHHc-CCHHH----------------
Confidence 444455667789999999999999999999999999999888889999 555444 44444
Q ss_pred hcChHHHHHHHhcCCCCccCCCC-CCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012 82 SNKYDEVKKNIEDGACINVSSER-CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 160 (271)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~ 160 (271)
+++|++.|++++.++.. |.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|++
T Consensus 60 ------v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~~~~Ll~ 132 (136)
T 1d9s_A 60 ------AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ-GHRDIARYLHA 132 (136)
T ss_dssp ------HHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH-TCHHHHHHHHH
T ss_pred ------HHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHH
Confidence 45555567778888888 88888888888888888888888888888888888888888887 88888888888
Q ss_pred CCCC
Q psy8012 161 HGAY 164 (271)
Q Consensus 161 ~g~~ 164 (271)
+|+|
T Consensus 133 ~Gad 136 (136)
T 1d9s_A 133 ATGD 136 (136)
T ss_dssp HHCC
T ss_pred cCCC
Confidence 8775
No 80
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=7.6e-28 Score=182.85 Aligned_cols=161 Identities=15% Similarity=0.125 Sum_probs=136.7
Q ss_pred CCChHHHHHHhCCHHHHHHHHHCCCCCCchh-hcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-HHH
Q psy8012 13 DHKPIAIAIQIGDPQIVKELQNHGAQIDKEI-YSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-VKK 90 (271)
Q Consensus 13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~~~ 90 (271)
+.++|+.|++.|+.+.++.++..+. +..+ ..|.|| ||+|+..++.+. ..+ +++
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~----Lh~A~~~~~~~~-------------------~~~iv~~ 60 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNI----LYDVLRNNNDEA-------------------RYKISMF 60 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTH----HHHHTTCSCHHH-------------------HHHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCH----HHHHHHcCCcch-------------------HHHHHHH
Confidence 5689999999999999999998765 4555 789999 666655443210 123 677
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHHhCC------HHHHHHHHHCCCCccccCCCCC-cHHHHHHHhC----CCHHHHHHHH
Q psy8012 91 NIEDGACINVSSERCGSALIYAAWKGY------EEIVDLLLDNGADVNFKSATGF-TALHMACRFH----DDDSIVRKLL 159 (271)
Q Consensus 91 ll~~~~~~~~~~~~g~t~l~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~----~~~~~~~~Ll 159 (271)
|++.|++++.++..|.||||+|+..++ .+++++|++.|++++..|..|+ ||||+|+..+ +..+++++|+
T Consensus 61 Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll 140 (186)
T 3t8k_A 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140 (186)
T ss_dssp HHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHH
Confidence 788899999999999999999999986 6889999999999999999999 9999999841 3356899999
Q ss_pred h-CCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012 160 R-HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIF 199 (271)
Q Consensus 160 ~-~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~ 199 (271)
+ +|++++.++. .|+||||+| ..++.+++++|.++....+
T Consensus 141 ~~~gad~~~~d~-~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 141 SQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp TSTTCCTTCCCT-TSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred HhcCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9 9999999999 999999999 9999999999998876654
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=2.4e-27 Score=171.24 Aligned_cols=133 Identities=23% Similarity=0.199 Sum_probs=119.6
Q ss_pred CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHh
Q psy8012 36 GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWK 115 (271)
Q Consensus 36 g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~ 115 (271)
+++++.++..|.|| ||+|+..++.++ +++|++.|++++.++..|.||||+|+.
T Consensus 2 ~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------v~~Ll~~g~~~~~~~~~g~t~L~~A~~- 54 (136)
T 1d9s_A 2 SPGIHMLGGSSDAG----LATAAARGQVET----------------------VRQLLEAGADPNALNRFGRRPIQVMMM- 54 (136)
T ss_dssp CCCCSCCCCCCSCH----HHHHHHTTCHHH----------------------HHHHHHTTCCTTCCCTTCCTTTTTSTT-
T ss_pred CCCccCCCCCCccH----HHHHHHcCCHHH----------------------HHHHHHcCCCcCCcCCCCCCHHHHHHc-
Confidence 57889999999999 555555554444 555566778899999999999999999
Q ss_pred CCHHHHHHHHHCCCCccccCCC-CCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHh
Q psy8012 116 GYEEIVDLLLDNGADVNFKSAT-GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLY 193 (271)
Q Consensus 116 ~~~~~~~~Ll~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~ 193 (271)
++.+++++|++.|++++..+.. |+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|++
T Consensus 55 ~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~ 132 (136)
T 1d9s_A 55 GSAQVAELLLLHGAEPNCADPATLTRPVHDAARE-GFLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGHRDIARYLHA 132 (136)
T ss_dssp SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHH-TCHHHHHHHHHTCCCCCCCSS-SSSCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999 99999999999 999999999999999999998 999999999 9999999999999
Q ss_pred chhh
Q psy8012 194 FIHE 197 (271)
Q Consensus 194 ~g~~ 197 (271)
+|++
T Consensus 133 ~Gad 136 (136)
T 1d9s_A 133 ATGD 136 (136)
T ss_dssp HHCC
T ss_pred cCCC
Confidence 9975
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=8.7e-28 Score=182.54 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=119.0
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCC-CCCCcHHHHHHHhCCH----HHHHHHHHCCCCccccCCCCCcHHHHHHHhCC
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSS-ERCGSALIYAAWKGYE----EIVDLLLDNGADVNFKSATGFTALHMACRFHD 150 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~ 150 (271)
++.|+..|+.+ ++.++..+. +..+ ..|.||||+|+..++. +++++|++.|++++..+..|+||||+|+.. +
T Consensus 10 l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~-~ 86 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG-G 86 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH-C
T ss_pred HHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-C
Confidence 34444444444 444454443 3344 6799999999999975 589999999999999999999999999998 6
Q ss_pred C------HHHHHHHHhCCCCccccCCCCCC-CHHHHH-hcCC-----chHHHHHHh-chhhHHHHhhcCCcccccchHHH
Q psy8012 151 D------DSIVRKLLRHGAYYNVVDGKTGK-TPLLHA-GKGA-----REVNTVLLY-FIHEIFKLMANNDTTILDRLDEM 216 (271)
Q Consensus 151 ~------~~~~~~Ll~~g~~~~~~~~~~g~-tpL~~A-~~~~-----~~~~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~ 216 (271)
+ .+++++|+++|+++|.++. .|. ||||+| ..+. .+++++|++ +|++
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gadin~~d~-~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad------------------- 146 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ------------------- 146 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSSSCBG-GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-------------------
T ss_pred CcchhhHHHHHHHHHHCCCCCCccCC-CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-------------------
Confidence 5 5789999999999999998 899 999999 6433 346677776 6666
Q ss_pred HHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 217 KSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
++.+|..|.||||+|++.|+.+++++|.+.
T Consensus 147 ----------------------~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 147 ----------------------LLIKDKWGLTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp ----------------------TTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred ----------------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 458999999999999999999999999874
No 83
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2.6e-27 Score=187.34 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=114.0
Q ss_pred hcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHH
Q psy8012 44 YSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDL 123 (271)
Q Consensus 44 ~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 123 (271)
..|.|| ||.|+..++.++++.| ++.|++++.. ..+.||||.|+..|+.+++++
T Consensus 3 ~~g~t~----L~~a~~~~~~~~~~~l----------------------l~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~ 55 (239)
T 1ycs_B 3 ITGQVS----LPPGKRTNLRKTGSER----------------------IAHGMRVKFN-PLPLALLLDSSLEGEFDLVQR 55 (239)
T ss_dssp -------------------------------------------------------------CHHHHHHHHHHTCHHHHHH
T ss_pred cccccc----CchhhhhhhHHHHHHH----------------------hccCCCcccC-chhhHHHHHHHHcCCHHHHHH
Confidence 357888 6666665555555555 4455566543 678999999999999999999
Q ss_pred HHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHh
Q psy8012 124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLM 202 (271)
Q Consensus 124 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~ 202 (271)
|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|+||||+| ..++.+++++|+++|++++
T Consensus 56 Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--- 130 (239)
T 1ycs_B 56 IIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLVESGAAVF--- 130 (239)
T ss_dssp HTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTT---
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcc---
Confidence 9999999999999999999999999 999999999999999999998 999999999 9999999999999999854
Q ss_pred hcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCc-hHHHHH--HHhCCCcHHHHHHHH
Q psy8012 203 ANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGE-TILDIA--KKRGFPLLEELEKKL 268 (271)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~-tpl~~A--~~~~~~~~~~ll~~~ 268 (271)
.+|..|. ||+|+| +..|+.+++++|.+.
T Consensus 131 --------------------------------------~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 131 --------------------------------------AMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp --------------------------------------CCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred --------------------------------------eecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 6777776 999999 889999999999764
No 84
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=5.2e-26 Score=161.55 Aligned_cols=126 Identities=33% Similarity=0.453 Sum_probs=99.2
Q ss_pred CCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHH
Q psy8012 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKN 91 (271)
Q Consensus 12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~l 91 (271)
+|.||||.|++.|+.+++++|+++|++++..+..|.|| ||+|+..++.+++++|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~----L~~A~~~~~~~~~~~L---------------------- 54 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP----LHLAARNGHLEVVKLL---------------------- 54 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCH----HHHHHHHTCHHHHHHH----------------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcH----HHHHHHcCcHHHHHHH----------------------
Confidence 58899999999999999999999999888888888888 6666555555554444
Q ss_pred HhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC
Q psy8012 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164 (271)
Q Consensus 92 l~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~ 164 (271)
++.|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+.. ++.+++++|+++|+|
T Consensus 55 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCC
T ss_pred HHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCC
Confidence 445666777777788888888888888888888888888887777888888888887 888888888887765
No 85
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=2.6e-26 Score=165.74 Aligned_cols=130 Identities=22% Similarity=0.220 Sum_probs=90.1
Q ss_pred CCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcCh
Q psy8012 6 DPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKY 85 (271)
Q Consensus 6 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~ 85 (271)
.......|.||||+|++.|+.+++++|+++|++++.++..|.|| ||+|+..++.+++++|
T Consensus 7 ~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~L---------------- 66 (136)
T 2jab_A 7 HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTP----LYLATAHGHLEIVEVL---------------- 66 (136)
T ss_dssp -----CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHHTCHHHHHHH----------------
T ss_pred CCcccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCH----HHHHHHcCCHHHHHHH----------------
Confidence 34445667888888888888888888888888888777777777 5555555444444333
Q ss_pred HHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCC
Q psy8012 86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG 162 (271)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g 162 (271)
++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|
T Consensus 67 ------l~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~-~~~~~~~~Ll~~G 136 (136)
T 2jab_A 67 ------LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN-GNEDLAEILQKLN 136 (136)
T ss_dssp ------HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHC-
T ss_pred ------HHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC-CCHHHHHHHHHcC
Confidence 444566677777777777777777777777777777777777777777777777776 7777777777654
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=1e-26 Score=171.85 Aligned_cols=131 Identities=22% Similarity=0.196 Sum_probs=110.5
Q ss_pred CchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHH
Q psy8012 40 DKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEE 119 (271)
Q Consensus 40 ~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~ 119 (271)
+..+..|.|| ||+|+..|+.+++ ++|++.|++++..+..|.||||+|+ .|+.+
T Consensus 6 ~~~~~~~~t~----L~~A~~~g~~~~v----------------------~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~ 58 (156)
T 1bi7_B 6 GSSMEPSADW----LATAAARGRVEEV----------------------RALLEAGANPNAPNSYGRRPIQVMM-MGSAR 58 (156)
T ss_dssp ----CCSTTH----HHHHHHHTCHHHH----------------------HHHHTTTCCTTCCCSSSCCTTTSSC-TTCHH
T ss_pred cCCCccchHH----HHHHHHcCCHHHH----------------------HHHHHcCCCCCCCCCCCCCHHHHHH-cCCHH
Confidence 3456678888 6666655555555 5555567889999999999999985 99999
Q ss_pred HHHHHHHCCCCccccCCCCCc-HHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012 120 IVDLLLDNGADVNFKSATGFT-ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE 197 (271)
Q Consensus 120 ~~~~Ll~~~~~~~~~~~~~~t-~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~ 197 (271)
++++|++.|++++..+..|+| |||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++
T Consensus 59 ~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~-~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~ga~ 136 (156)
T 1bi7_B 59 VAELLLLHGAEPNCADPATLTRPVHDAARE-GFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRAAAGG 136 (156)
T ss_dssp HHHHHHTTTCCCCCCCTTTCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC--
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHHC-CCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhCHHHHHHHHHHcCCC
Confidence 999999999999999999999 99999999 999999999999999999998 899999999 99999999999999999
Q ss_pred HH
Q psy8012 198 IF 199 (271)
Q Consensus 198 ~~ 199 (271)
++
T Consensus 137 ~~ 138 (156)
T 1bi7_B 137 TR 138 (156)
T ss_dssp --
T ss_pred CC
Confidence 65
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=4e-26 Score=164.78 Aligned_cols=123 Identities=37% Similarity=0.441 Sum_probs=106.9
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-
Q psy8012 102 SERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA- 180 (271)
Q Consensus 102 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A- 180 (271)
...+.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|++.|++++..+. .|.||||+|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGADVNAVDA-IGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHH
Confidence 34567899999999999999999999988888888899999999988 899999999999999998888 899999999
Q ss_pred hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCc
Q psy8012 181 GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPL 260 (271)
Q Consensus 181 ~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~ 260 (271)
..++.+++++|+++|++++ .+|..|.||||+|++.|+.+
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~-----------------------------------------~~~~~g~tpl~~A~~~~~~~ 127 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVN-----------------------------------------AQDKFGKTAFDISIGNGNED 127 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTT-----------------------------------------CCCTTSCCHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHcCCCCc-----------------------------------------CcCCCCCCHHHHHHHCCCHH
Confidence 8888999999988887743 67888999999999999999
Q ss_pred HHHHHHH
Q psy8012 261 LEELEKK 267 (271)
Q Consensus 261 ~~~ll~~ 267 (271)
++++|.+
T Consensus 128 ~~~~Ll~ 134 (136)
T 2jab_A 128 LAEILQK 134 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988876
No 88
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.94 E-value=2.9e-27 Score=170.97 Aligned_cols=131 Identities=29% Similarity=0.336 Sum_probs=117.9
Q ss_pred CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCC
Q psy8012 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 174 (271)
Q Consensus 95 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~ 174 (271)
|+++ .++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~-~g~ 77 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNTTGY-QND 77 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCG-GGC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCcccCcCC-CCC
Confidence 4566 6788999999999999999999999999999999999999999999998 999999999999999999998 899
Q ss_pred CHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHH
Q psy8012 175 TPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIA 253 (271)
Q Consensus 175 tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A 253 (271)
||||+| ..++.+++++|+++|++++ .+|..|.||+|+|
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~ga~~~-----------------------------------------~~~~~g~tpl~~A 116 (137)
T 3c5r_A 78 SPLHDAAKNGHVDIVKLLLSYGASRN-----------------------------------------AVNIFGLRPVDYT 116 (137)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------------------CCCTTSCCGGGGC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCC-----------------------------------------CCCCCCCCHHHHH
Confidence 999999 9999999999999998854 7899999999999
Q ss_pred HHhCCCcHHHHHHHHh
Q psy8012 254 KKRGFPLLEELEKKLA 269 (271)
Q Consensus 254 ~~~~~~~~~~ll~~~~ 269 (271)
+..+..++++++++..
T Consensus 117 ~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 117 DDESMKSLLLLPEKNE 132 (137)
T ss_dssp CCHHHHHHHSCC----
T ss_pred hhccHHHHHhhccccc
Confidence 9999999998887743
No 89
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=6.9e-27 Score=183.59 Aligned_cols=160 Identities=15% Similarity=0.042 Sum_probs=114.8
Q ss_pred HHHHHHCCCCCCchhh---cccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHHHhcChHH-HHHHHhc
Q psy8012 29 VKELQNHGAQIDKEIY---SKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNVRSNKYDE-VKKNIED 94 (271)
Q Consensus 29 ~~~Ll~~g~~~~~~~~---~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a~~~~~~~-~~~ll~~ 94 (271)
++.|+++|++++..+. .+.|| ||+|+..|+.+++++|++.|+++ ||+|+..++.+ +++|++.
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 76 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVL----LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA 76 (229)
T ss_dssp ---------CCCCCCCTTSCHHHH----HHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CeehhccCCCCccccccccchhHH----HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 4567777777664443 45555 88888888888888888876654 88888888888 8888888
Q ss_pred CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHH--HHhCCCHHHHHHHHhCCCCccccCCC
Q psy8012 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMA--CRFHDDDSIVRKLLRHGAYYNVVDGK 171 (271)
Q Consensus 95 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~~Ll~~g~~~~~~~~~ 171 (271)
|++++.+|..|.||||+|+..|+.+++++|++.|++++..+ ..|+||||+| +.. ++.+++++|++.|++++..+.
T Consensus 77 ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~-~~~~~v~~Ll~~ga~~~~~~~- 154 (229)
T 2vge_A 77 GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE-GYADCATYLADVEQSMGLMNS- 154 (229)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTST-THHHHHHHHHHHHHHTTTSGG-
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhc-ChHHHHHHHHHcCCCcccccC-
Confidence 88888888888888888888888888888888888888775 5788888888 766 888888888888888888877
Q ss_pred CCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012 172 TGKTPLLHA-GKGAREVNTVLLYFIHE 197 (271)
Q Consensus 172 ~g~tpL~~A-~~~~~~~~~~L~~~g~~ 197 (271)
.|.||++.+ .... .++|++.|++
T Consensus 155 ~~~~~l~~~~~~~~---~~~ll~~ga~ 178 (229)
T 2vge_A 155 GAVYALWDYSAEFG---DELSFREGES 178 (229)
T ss_dssp GEEEESSCBCCSST---TBCCBCTTCE
T ss_pred CchHHHHHHhhccc---cccCcccccc
Confidence 777887755 3322 2456666666
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=5e-26 Score=164.40 Aligned_cols=128 Identities=23% Similarity=0.204 Sum_probs=82.7
Q ss_pred CCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcCh
Q psy8012 6 DPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKY 85 (271)
Q Consensus 6 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~ 85 (271)
|++.|.+|.||||+|+..|+.+++++|++.|++++.++..|.|| ||+|+..++.++
T Consensus 3 d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~-------------------- 58 (137)
T 3c5r_A 3 DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTP----LHEACNHGHLKV-------------------- 58 (137)
T ss_dssp -CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH----HHHHHHTTCHHH--------------------
T ss_pred CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCH----HHHHHHcCCHHH--------------------
Confidence 44788899999999999999999999999988888777777777 444433333333
Q ss_pred HHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012 86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 160 (271)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~ 160 (271)
+++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+.. +..+++++|.+
T Consensus 59 --~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~-~~~~~l~~l~~ 130 (137)
T 3c5r_A 59 --VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE-SMKSLLLLPEK 130 (137)
T ss_dssp --HHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH-HHHHHHSCC--
T ss_pred --HHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc-cHHHHHhhccc
Confidence 3333444555566666666666666666666666666666666666666666666666555 55555544443
No 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=1.2e-24 Score=154.45 Aligned_cols=125 Identities=36% Similarity=0.408 Sum_probs=111.6
Q ss_pred cccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHH
Q psy8012 45 SKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124 (271)
Q Consensus 45 ~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L 124 (271)
+|.|| ||+|+..|+.+++++| ++.|++++..+..|.||||+|+..++.+++++|
T Consensus 1 ~g~t~----L~~A~~~~~~~~v~~L----------------------l~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 54 (126)
T 1n0r_A 1 NGRTP----LHLAARNGHLEVVKLL----------------------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54 (126)
T ss_dssp CCCCH----HHHHHHHTCHHHHHHH----------------------HHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCccH----HHHHHHcCcHHHHHHH----------------------HHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHH
Confidence 36778 6666666555555554 556778888999999999999999999999999
Q ss_pred HHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012 125 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE 197 (271)
Q Consensus 125 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~ 197 (271)
++.|++++..+..|.||||+|+.. ++.+++++|+++|++++.++. .|.|||++| ..++.+++++|+++|++
T Consensus 55 l~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 55 LEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHcCCCCcccCCCCCcHHHHHHHc-ChHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999999998 999999999999999999998 899999999 99999999999999875
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=2.5e-26 Score=174.34 Aligned_cols=131 Identities=24% Similarity=0.318 Sum_probs=115.4
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCCHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSI 154 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~ 154 (271)
||.|+..++.+ ++.|++ +++++.++..|.||||+|+..|+.+++++|++.|++++..+ ..|+||||+|+.. ++.++
T Consensus 48 L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~-~~~~~ 125 (183)
T 3deo_A 48 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY-VRPEV 125 (183)
T ss_dssp HHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT-TCHHH
T ss_pred HHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc-CcHHH
Confidence 55555556566 666677 78899999999999999999999999999999999999888 8999999999998 99999
Q ss_pred HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012 155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN 233 (271)
Q Consensus 155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 233 (271)
+++|+++|++++.++. .|.||||+| ..+
T Consensus 126 v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~-------------------------------------------------- 154 (183)
T 3deo_A 126 VEALVELGADIEVEDE-RGLTALELAREIL-------------------------------------------------- 154 (183)
T ss_dssp HHHHHHHTCCTTCCCT-TSCCHHHHHHHHH--------------------------------------------------
T ss_pred HHHHHHcCCCCcCCCC-CCCCHHHHHHHhc--------------------------------------------------
Confidence 9999999999999998 999999999 421
Q ss_pred CcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
....+.||+++|++.|..+++++|++.
T Consensus 155 --------~~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 155 --------KTTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp --------HTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred --------cCcccccHHHHHHHcCHHHHHHHHHHh
Confidence 234678999999999999999999864
No 93
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=5.4e-27 Score=196.42 Aligned_cols=211 Identities=9% Similarity=0.010 Sum_probs=154.4
Q ss_pred hCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHH-HHhHHHHHHHHHcCcH---HHHHHHhcChHH-HHHHHhcCCC
Q psy8012 23 IGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALE-LEERKAINDLLRLNLD---FLKNVRSNKYDE-VKKNIEDGAC 97 (271)
Q Consensus 23 ~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~-~~~~~~~~~L~~~g~~---~l~~a~~~~~~~-~~~ll~~~~~ 97 (271)
.+..+.+..++....+++ ...+.++ +++|.. .++.++++++++.|.+ +||+|+..|+.+ +++|++.|+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~--~~~~ll~----~~~a~~~~~~~~~~~~l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~ 117 (376)
T 2aja_A 44 LSYKEAIHIFLPGTKNME--QVRQLLC----LYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS 117 (376)
T ss_dssp SCHHHHHHHCCCCSSHHH--HHHHHHH----HHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C
T ss_pred ccHHHHHHHHhcCCCCHH--HHHHHHH----HHHHHhcCCCHHHHHHHHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCc
Confidence 344566666665544332 2235566 777766 5778899999998864 499999999999 9999999873
Q ss_pred C---ccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCc---cccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccc--cC
Q psy8012 98 I---NVSSERCGSALIYAAWKGYEEIVDLLLDNGADV---NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV--VD 169 (271)
Q Consensus 98 ~---~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~--~~ 169 (271)
. +..+..+.||||+|+..|+.+++++|++.|+++ +..+.. +||||+|+.. |+.+++++|+++|++++. .+
T Consensus 118 ~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~-G~~eiv~~Ll~~ga~~~~~~~d 195 (376)
T 2aja_A 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN-GHLHVLNRLCELAPTEATAMIQ 195 (376)
T ss_dssp CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT-TCHHHHHHHHHSCGGGHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC-CCHHHHHHHHHcCCccchhccC
Confidence 2 233456788999999999999999999999762 322223 8999999998 999999999999999887 77
Q ss_pred CCCCCCHHHHH--hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCc
Q psy8012 170 GKTGKTPLLHA--GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGE 247 (271)
Q Consensus 170 ~~~g~tpL~~A--~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 247 (271)
. .|.||||+| ..|+.+++++|+++|++. ......+......+++++|+..|++ ++.+|
T Consensus 196 ~-~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~~--~taL~~Aa~~g~~evv~lL~~~ga~-------------~~~~~---- 255 (376)
T 2aja_A 196 A-ENYYAFRWAAVGRGHHNVINFLLDCPVML--AYAEIHEFEYGEKYVNPFIARHVNR-------------LKEMH---- 255 (376)
T ss_dssp H-HHHHHHHHHHSTTCCHHHHHHHTTSHHHH--HHHHHCTTTTTTTTHHHHHHHHHHH-------------HHHHH----
T ss_pred C-CCCCHHHHHHHHCCCHHHHHHHHhCCCcc--chHHHHHHHCCCHHHHHHHHhcCcc-------------ccccc----
Confidence 7 799999988 578999999999988752 2223334445668899999998877 22222
Q ss_pred hHHHHHHHhCCCcH
Q psy8012 248 TILDIAKKRGFPLL 261 (271)
Q Consensus 248 tpl~~A~~~~~~~~ 261 (271)
++++.|+..|+.++
T Consensus 256 ~~l~~A~~~g~~~v 269 (376)
T 2aja_A 256 DAFKLSNPDGVFDL 269 (376)
T ss_dssp TTTTTTSSSSCCCC
T ss_pred HHHHHHHHCCChhh
Confidence 35566666666663
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=1.7e-24 Score=153.40 Aligned_cols=111 Identities=27% Similarity=0.282 Sum_probs=97.9
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-
Q psy8012 102 SERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA- 180 (271)
Q Consensus 102 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A- 180 (271)
+..|.||||+|+..|+.+++++|++.|.+++..+..|+||||+|+.. ++.+++++|++.|++++.++. .|+||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~d~-~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAPDK-HHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHH
Confidence 45678999999999999999999999999999999999999999998 999999999999999999998 899999999
Q ss_pred hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHH
Q psy8012 181 GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKK 255 (271)
Q Consensus 181 ~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~ 255 (271)
..++.+++++|+++|++++ .+|..|.||+|+|..
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~-----------------------------------------~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKT-----------------------------------------VKGPDGLTAFEATDN 115 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTT-----------------------------------------CCCTTSCCHHHHCCC
T ss_pred HcCCHHHHHHHHHcCCCCC-----------------------------------------CcCCCCCCHHHHhCC
Confidence 8999999999999988743 789999999999943
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=1.4e-24 Score=172.06 Aligned_cols=142 Identities=24% Similarity=0.207 Sum_probs=123.8
Q ss_pred CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHH
Q psy8012 10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVK 89 (271)
Q Consensus 10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~ 89 (271)
+.+|.||||+|++.|+.+++++|++ |++++.++..|.|| ||+|+..|+.++++
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~----L~~A~~~g~~~~v~---------------------- 94 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTA----LLFVAGLGSDKCVR---------------------- 94 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBH----HHHHHHHTCHHHHH----------------------
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCH----HHHHHHCCCHHHHH----------------------
Confidence 3478999999999999999999999 99999999999999 66666666555554
Q ss_pred HHHhcCCCCccCC-CCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcccc
Q psy8012 90 KNIEDGACINVSS-ERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 168 (271)
Q Consensus 90 ~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~ 168 (271)
+|++.|++++.++ ..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. +..
T Consensus 95 ~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-~~~---------------- 157 (244)
T 3ui2_A 95 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-LKT---------------- 157 (244)
T ss_dssp HHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-HTT----------------
T ss_pred HHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-Hhc----------------
Confidence 4555678888888 7899999999999999999999999999999999999999999975 221
Q ss_pred CCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012 169 DGKTGKTPLLHA-GKGAREVNTVLLYFIHE 197 (271)
Q Consensus 169 ~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~ 197 (271)
. .+.|||++| ..|+.+++++|.+.+.+
T Consensus 158 -~-~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 158 -T-PKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp -C-CCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred -c-CCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 3 689999999 99999999999988665
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=8.5e-25 Score=165.83 Aligned_cols=139 Identities=24% Similarity=0.196 Sum_probs=121.6
Q ss_pred CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHH
Q psy8012 10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVK 89 (271)
Q Consensus 10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~ 89 (271)
+.+|.||||+|+..|+.+++++|++ |++++.++..|.|| ||+|+..|+.++++
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~----L~~A~~~~~~~~v~---------------------- 93 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTA----LLFVAGLGSDKCVR---------------------- 93 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCH----HHHHHHHTCHHHHH----------------------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCH----HHHHHHcCCHHHHH----------------------
Confidence 4578999999999999999999999 99999999999999 66666666555554
Q ss_pred HHHhcCCCCccCC-CCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcccc
Q psy8012 90 KNIEDGACINVSS-ERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 168 (271)
Q Consensus 90 ~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~ 168 (271)
+|++.|++++.++ ..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+.. ++.
T Consensus 94 ~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~---------------- 156 (183)
T 3deo_A 94 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-LKT---------------- 156 (183)
T ss_dssp HHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-HHT----------------
T ss_pred HHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh-ccC----------------
Confidence 4555678888888 8899999999999999999999999999999999999999999986 322
Q ss_pred CCCCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012 169 DGKTGKTPLLHA-GKGAREVNTVLLYF 194 (271)
Q Consensus 169 ~~~~g~tpL~~A-~~~~~~~~~~L~~~ 194 (271)
. .+.+||++| ..+..+++++|.++
T Consensus 157 -~-~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 -T-PKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp -C-CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred -c-ccccHHHHHHHcCHHHHHHHHHHh
Confidence 3 678999999 99999999999865
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=3e-24 Score=175.21 Aligned_cols=121 Identities=24% Similarity=0.241 Sum_probs=114.5
Q ss_pred HHHHHHHhcChHH-HHHHHhcCCCCcc------CCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCccccCCCCCcHHHH
Q psy8012 75 DFLKNVRSNKYDE-VKKNIEDGACINV------SSERCGSALIYAAWK---GYEEIVDLLLDNGADVNFKSATGFTALHM 144 (271)
Q Consensus 75 ~~l~~a~~~~~~~-~~~ll~~~~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~ 144 (271)
+.|+.|+..++.+ ++.|+..|++++. .+..|.||||+|+.. ++.+++++|+++|++++..|..|+||||+
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~ 232 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 3499999999999 9999999999988 688999999999997 89999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012 145 ACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE 197 (271)
Q Consensus 145 a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~ 197 (271)
|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++
T Consensus 233 A~~~-g~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 233 AALY-NQPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp HHHT-TCHHHHHHHHHTTCCCSCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 9998 999999999999999999998 999999999 99999999999998775
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=5.1e-24 Score=168.89 Aligned_cols=131 Identities=24% Similarity=0.326 Sum_probs=117.0
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCCHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSI 154 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~ 154 (271)
||.|+..++.+ ++.|++ +++++.++..|.||||+|+..|+.+++++|++.|++++..+ ..|+||||+|+.. ++.++
T Consensus 49 L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~-g~~~~ 126 (244)
T 3ui2_A 49 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY-VRPEV 126 (244)
T ss_dssp HHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT-TCHHH
T ss_pred HHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc-CCHHH
Confidence 55566666666 677777 78999999999999999999999999999999999999888 8899999999998 99999
Q ss_pred HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012 155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN 233 (271)
Q Consensus 155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 233 (271)
+++|+++|++++.++. .|.||||+| ..
T Consensus 127 v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~--------------------------------------------------- 154 (244)
T 3ui2_A 127 VEALVELGADIEVEDE-RGLTALELAREI--------------------------------------------------- 154 (244)
T ss_dssp HHHHHHTTCCTTCCCT-TCCCHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHCCCCCCCCCC-CCCcHHHHHHHH---------------------------------------------------
Confidence 9999999999999998 999999999 31
Q ss_pred CcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012 234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL 268 (271)
Q Consensus 234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~ 268 (271)
..+..+.|||++|++.|+.+++++|.+.
T Consensus 155 -------~~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 155 -------LKTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp -------HTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 1345789999999999999999999874
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=1.5e-24 Score=169.42 Aligned_cols=101 Identities=23% Similarity=0.187 Sum_probs=44.8
Q ss_pred CCCccCCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCC
Q psy8012 96 ACINVSSERCGSALIYAAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 174 (271)
Q Consensus 96 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~ 174 (271)
++++.++..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.
T Consensus 97 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~~~-~g~ 174 (222)
T 3ehr_A 97 VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK-GYADIVQLLLAKGARTDLRNI-EKK 174 (222)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCSCCCCT-TSC
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCccccC-CCC
Confidence 33444444444444444444444444444444 444444444455555555544 445555555555555554444 455
Q ss_pred CHHHHH-hcCCchHHHHHHhchhhH
Q psy8012 175 TPLLHA-GKGAREVNTVLLYFIHEI 198 (271)
Q Consensus 175 tpL~~A-~~~~~~~~~~L~~~g~~~ 198 (271)
|||++| ..+..++++.|++.|+..
T Consensus 175 t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 175 LAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp CHHHHCCSHHHHHHHC---------
T ss_pred CHHHHhcchhHHHHHHHHhccchhh
Confidence 555555 444444554444444443
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=7.7e-24 Score=149.98 Aligned_cols=110 Identities=25% Similarity=0.330 Sum_probs=56.2
Q ss_pred CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHH
Q psy8012 10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVK 89 (271)
Q Consensus 10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~ 89 (271)
+..|.||||+|+..|+.+++++|++.|++++.++..|.|| ||+|+..++.++ ++
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------v~ 57 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP----LHYAADCGQLEI----------------------LE 57 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCH----HHHHHHTTCHHH----------------------HH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcH----HHHHHHcCCHHH----------------------HH
Confidence 3456677777777777777777777766666655555555 333322222222 23
Q ss_pred HHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHH
Q psy8012 90 KNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145 (271)
Q Consensus 90 ~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a 145 (271)
+|++.|++++.+|..|.||||+|+..++.+++++|++.|++++..+..|.||+|+|
T Consensus 58 ~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 58 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred HHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 33333444444444455555555555555555555555555444444555555544
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=171.51 Aligned_cols=140 Identities=22% Similarity=0.153 Sum_probs=117.4
Q ss_pred CCChHHHHHHhCCHHHHHHHHHCCCCCCc------hhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChH
Q psy8012 13 DHKPIAIAIQIGDPQIVKELQNHGAQIDK------EIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYD 86 (271)
Q Consensus 13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~------~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~ 86 (271)
+.++|+.|+..|+.+.++.|++.|++++. .+..|.|| ||+|+..++ .++.
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~----Lh~A~~~~~--------------------~~~~ 206 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELV----LHLAVKVAN--------------------QASL 206 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECH----HHHHHHTCC--------------------TTTH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccH----HHHHHHhcc--------------------cCcH
Confidence 44679999999999999999999999987 68899999 666655410 1444
Q ss_pred H-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCc
Q psy8012 87 E-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165 (271)
Q Consensus 87 ~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~ 165 (271)
+ +++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.. ++.+++++|+++|++
T Consensus 207 ~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~-~~~~iv~~Ll~~ga~- 284 (301)
T 2b0o_E 207 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK-HHKECEELLEQAQAG- 284 (301)
T ss_dssp HHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHH-TCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHhcCC-
Confidence 4 6666777889999999999999999999999999999999999999999999999999999 999999999998865
Q ss_pred cccCCCCCCCHHHHH-hcCC
Q psy8012 166 NVVDGKTGKTPLLHA-GKGA 184 (271)
Q Consensus 166 ~~~~~~~g~tpL~~A-~~~~ 184 (271)
.|.||||+| .+|+
T Consensus 285 ------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 285 ------TFAFPLHVDYSWVI 298 (301)
T ss_dssp ------TTSSCCC-------
T ss_pred ------CCCChhHHHHhcCC
Confidence 478999999 7664
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=4.2e-22 Score=160.72 Aligned_cols=183 Identities=20% Similarity=0.194 Sum_probs=138.3
Q ss_pred CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccch-HHHHHHHHHH--------HHhHHHHHHHHHcCcHHHHH
Q psy8012 9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKA-AARIAHSALE--------LEERKAINDLLRLNLDFLKN 79 (271)
Q Consensus 9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~-~~~~l~~A~~--------~~~~~~~~~L~~~g~~~l~~ 79 (271)
.|..+.++++.+...|+..+.+++...-......-...... ...--..... ..+.+....+ ..|+.
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l-----~~l~~ 136 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKL-----HSLCE 136 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHH-----HHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhh-----hhhhh
Confidence 57788999999999999887776654322111100000011 0000000000 0011111111 12889
Q ss_pred HHhcChHH-HHHHHhcCCCCc------cCCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC
Q psy8012 80 VRSNKYDE-VKKNIEDGACIN------VSSERCGSALIYAAWK---GYEEIVDLLLDNGADVNFKSATGFTALHMACRFH 149 (271)
Q Consensus 80 a~~~~~~~-~~~ll~~~~~~~------~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~ 149 (271)
|+..++.. ++.++..|.+++ ..+..|.||||+|+.. ++.+++++|++.|++++..|..|+||||+|+..
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~- 215 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT- 215 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHT-
T ss_pred HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-
Confidence 99999999 999999998844 4478899999999999 899999999999999999999999999999998
Q ss_pred CCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhH
Q psy8012 150 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEI 198 (271)
Q Consensus 150 ~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~ 198 (271)
++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++.
T Consensus 216 g~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 216 DNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCCCCCCccC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999999999999999998 999999999 999999999999999863
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=4.7e-23 Score=160.96 Aligned_cols=155 Identities=21% Similarity=0.276 Sum_probs=69.2
Q ss_pred CCCCCChHHHHHHhCCHHHHHHHHHCCCC---------------CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc
Q psy8012 10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQ---------------IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL 74 (271)
Q Consensus 10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~---------------~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~ 74 (271)
++.+.++.+.+++.|+...+..+.+.+.- ++..+..|.|| ||+|+..|+.+++++|++.|+
T Consensus 22 d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~g~ 97 (222)
T 3ehr_A 22 TFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNP----LHEAAKRGNLSWLRECLDNRV 97 (222)
T ss_dssp CCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCH----HHHHHHHTCHHHHHHHHHTTC
T ss_pred CcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccc----cccccccCcHHHHHHHHhCCC
Confidence 55666777777777665433322221110 01122334444 555555555555555554443
Q ss_pred HH----------HHHHHhcChHH-HHHHHhc-CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHH
Q psy8012 75 DF----------LKNVRSNKYDE-VKKNIED-GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTAL 142 (271)
Q Consensus 75 ~~----------l~~a~~~~~~~-~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l 142 (271)
++ ||+|+..++.+ +++|++. |++++.++..|.||||+|+..|+.+++++|++.|++++..+..|.|||
T Consensus 98 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 177 (222)
T 3ehr_A 98 GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177 (222)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHH
Confidence 32 55555555555 5555544 455555555555555555555555555555555555555555555555
Q ss_pred HHHHHhCCCHHHHHHHHhCCCCccccC
Q psy8012 143 HMACRFHDDDSIVRKLLRHGAYYNVVD 169 (271)
Q Consensus 143 ~~a~~~~~~~~~~~~Ll~~g~~~~~~~ 169 (271)
++|+.. +..++++.|++.|+..+..+
T Consensus 178 ~~A~~~-~~~~~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 178 DMATNA-ACASLLKKKQGTDAVRTLSN 203 (222)
T ss_dssp HHCCSH-HHHHHHC-------------
T ss_pred HHhcch-hHHHHHHHHhccchhhhccc
Confidence 555544 44555555555444444333
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.88 E-value=2.7e-22 Score=134.78 Aligned_cols=92 Identities=41% Similarity=0.462 Sum_probs=87.2
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hc
Q psy8012 104 RCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GK 182 (271)
Q Consensus 104 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~ 182 (271)
+|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHc
Confidence 478999999999999999999999999999999999999999998 999999999999999999998 999999999 99
Q ss_pred CCchHHHHHHhchhh
Q psy8012 183 GAREVNTVLLYFIHE 197 (271)
Q Consensus 183 ~~~~~~~~L~~~g~~ 197 (271)
++.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999874
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=2.3e-22 Score=167.78 Aligned_cols=141 Identities=18% Similarity=0.097 Sum_probs=97.8
Q ss_pred CCCChHHHHHHh-CCHHHHHHHHHCCCCCCchh--hcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHH
Q psy8012 12 EDHKPIAIAIQI-GDPQIVKELQNHGAQIDKEI--YSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEV 88 (271)
Q Consensus 12 ~g~t~L~~A~~~-g~~~~~~~Ll~~g~~~~~~~--~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~ 88 (271)
.+.|+||.|+.. |+.++++.|+++|++++..+ ..|.|| ||+|+..++.++ +
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~Tp----Lh~Aa~~g~~~i----------------------v 251 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATP----LIQATAANSLLA----------------------C 251 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCH----HHHHHHTTCHHH----------------------H
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCH----HHHHHHCCCHHH----------------------H
Confidence 345688888888 88888888888888888777 778888 555444444433 4
Q ss_pred HHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCC---Cc
Q psy8012 89 KKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA---YY 165 (271)
Q Consensus 89 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~---~~ 165 (271)
++|+++|++++..|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.. ++.+++++|+..+. +.
T Consensus 252 ~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~-g~~~iv~lLl~~~~~~~~~ 330 (368)
T 3jue_A 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET-ANADIVTLLRLAKMREAEA 330 (368)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHHC-----
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCcccc
Confidence 555556778888888888888888888888888888888888888888888888888887 88888888886653 33
Q ss_pred cccCCCCCCCHHHHH
Q psy8012 166 NVVDGKTGKTPLLHA 180 (271)
Q Consensus 166 ~~~~~~~g~tpL~~A 180 (271)
...+. .+.|+++++
T Consensus 331 ~~~~~-~~~t~l~i~ 344 (368)
T 3jue_A 331 AQGQA-GDETYLDIF 344 (368)
T ss_dssp ---------------
T ss_pred cccCC-CCCCHHHHH
Confidence 33444 577777766
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=6.9e-22 Score=172.13 Aligned_cols=131 Identities=21% Similarity=0.152 Sum_probs=111.1
Q ss_pred CChHHHHHHhCCHHHHHHHHHCCCCCCch------hhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH
Q psy8012 14 HKPIAIAIQIGDPQIVKELQNHGAQIDKE------IYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE 87 (271)
Q Consensus 14 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~------~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~ 87 (271)
.+.||.|+..|+.+.++.|++.|++++.. +..|.|| ||+|+.. +..++.+
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~----Lh~A~~~--------------------a~~g~~~ 188 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELV----LHLAVKV--------------------ANQASLP 188 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCH----HHHHHHT--------------------CCTTTHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchH----HHHHHHh--------------------cccccHH
Confidence 36799999999999999999999999877 7889999 6665430 2245555
Q ss_pred -HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcc
Q psy8012 88 -VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166 (271)
Q Consensus 88 -~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~ 166 (271)
+++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+.. ++.+++++|+++|++++
T Consensus 189 ~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK-HHKECEELLEQAQAGTF 267 (497)
T ss_dssp HHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHT-TCHHHHHHHHHTCC---
T ss_pred HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHhCCCCC
Confidence 6666777889999999999999999999999999999999999999999999999999998 99999999999999988
Q ss_pred ccC
Q psy8012 167 VVD 169 (271)
Q Consensus 167 ~~~ 169 (271)
...
T Consensus 268 ~~~ 270 (497)
T 3lvq_E 268 AFP 270 (497)
T ss_dssp ---
T ss_pred CCc
Confidence 744
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=7.5e-22 Score=171.92 Aligned_cols=123 Identities=24% Similarity=0.272 Sum_probs=113.3
Q ss_pred HHHHHhcChHH-HHHHHhcCCCCccC------CCCCCcHHHHHHH---hCCHHHHHHHHHCCCCccccCCCCCcHHHHHH
Q psy8012 77 LKNVRSNKYDE-VKKNIEDGACINVS------SERCGSALIYAAW---KGYEEIVDLLLDNGADVNFKSATGFTALHMAC 146 (271)
Q Consensus 77 l~~a~~~~~~~-~~~ll~~~~~~~~~------~~~g~t~l~~a~~---~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~ 146 (271)
|+.|+..++.+ ++.|++.|++++.. +..|.||||+|+. .|+.+++++|++.|++++..|..|+||||+|+
T Consensus 136 L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~ 215 (497)
T 3lvq_E 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAA 215 (497)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHT
T ss_pred HHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence 88899999999 99999999999877 8899999999977 89999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHH
Q psy8012 147 RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKL 201 (271)
Q Consensus 147 ~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~ 201 (271)
.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++..
T Consensus 216 ~~-g~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 216 LY-NQPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp TT-TCHHHHHHHHHTCCCCSCCCT-TCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred Hc-CCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 98 999999999999999999998 999999999 999999999999999998753
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=2.9e-21 Score=161.17 Aligned_cols=121 Identities=23% Similarity=0.278 Sum_probs=114.8
Q ss_pred HHHHHHHhc-ChHH-HHHHHhcCCCCccCC--CCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC
Q psy8012 75 DFLKNVRSN-KYDE-VKKNIEDGACINVSS--ERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150 (271)
Q Consensus 75 ~~l~~a~~~-~~~~-~~~ll~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~ 150 (271)
.+|+.|+.. ++.+ ++.|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+.. +
T Consensus 201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~-g 279 (368)
T 3jue_A 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL-G 279 (368)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-T
T ss_pred cHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-C
Confidence 349999999 9999 999999999999998 8899999999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE 197 (271)
Q Consensus 151 ~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~ 197 (271)
+.+++++|+++|++++..+. .|.||||+| ..++.+++++|+..+..
T Consensus 280 ~~~~v~~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 280 HTGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 99999999999999999998 999999999 99999999999988754
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.86 E-value=3.8e-21 Score=129.13 Aligned_cols=93 Identities=29% Similarity=0.362 Sum_probs=64.1
Q ss_pred CCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHH
Q psy8012 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKN 91 (271)
Q Consensus 12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~l 91 (271)
+|.||||+|+..|+.+++++|++.|++++.++..|.|| ||+|+..++.++ +++|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~----L~~A~~~~~~~~----------------------v~~L 54 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP----LHLAARNGHLEV----------------------VKLL 54 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHH----------------------HHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH----HHHHHHcCCHHH----------------------HHHH
Confidence 47888888888888888888888888888877777777 444444333333 4444
Q ss_pred HhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCC
Q psy8012 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130 (271)
Q Consensus 92 l~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 130 (271)
++.|++++.++..|.||||+|+..|+.+++++|++.|++
T Consensus 55 l~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 445666677777777777777777777777777776653
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=1e-21 Score=137.23 Aligned_cols=101 Identities=34% Similarity=0.335 Sum_probs=95.8
Q ss_pred cCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHH
Q psy8012 100 VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 179 (271)
Q Consensus 100 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~ 179 (271)
.+|..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~d~-~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNARSK-DGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTTTCCTTCCCT-TCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCcccCC-CCCCHHHH
Confidence 4678999999999999999999999999999999999999999999998 999999999999999999998 89999999
Q ss_pred H-hcCCchHHHHHHhchhhHHHHh
Q psy8012 180 A-GKGAREVNTVLLYFIHEIFKLM 202 (271)
Q Consensus 180 A-~~~~~~~~~~L~~~g~~~~~~~ 202 (271)
| ..++.+++++|+++|++++...
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~ 105 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARS 105 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHS
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCC
Confidence 9 9999999999999999987543
No 111
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=8.9e-21 Score=152.93 Aligned_cols=125 Identities=17% Similarity=0.190 Sum_probs=109.6
Q ss_pred CChHHHHHHhCCHHHHHHHHHCCCCCC------chhhcccchHHHHHHHHHHH---HhHHHHHHHHHcCcHHHHHHHhcC
Q psy8012 14 HKPIAIAIQIGDPQIVKELQNHGAQID------KEIYSKNKAAARIAHSALEL---EERKAINDLLRLNLDFLKNVRSNK 84 (271)
Q Consensus 14 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~------~~~~~g~t~~~~~l~~A~~~---~~~~~~~~L~~~g~~~l~~a~~~~ 84 (271)
.++|+.|+..|+.+.++.+++.|++++ ..+..|.|| ||+|+.. ++.++
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~----Lh~A~~~~~~~~~~~------------------- 187 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETA----LHLAVRSVDRTSLHI------------------- 187 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBH----HHHHHHHCCTTTHHH-------------------
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCc----chHHHHhcccchHHH-------------------
Confidence 358999999999999999999999854 447789999 7777666 44544
Q ss_pred hHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC
Q psy8012 85 YDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164 (271)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~ 164 (271)
+++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.. ++.+++++|+++|++
T Consensus 188 ---v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 188 ---VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL-KHEHCEELLTQALSG 263 (278)
T ss_dssp ---HHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHHTT
T ss_pred ---HHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc-CCHHHHHHHHHcCCC
Confidence 5555666788999999999999999999999999999999999999999999999999998 999999999999875
Q ss_pred c
Q psy8012 165 Y 165 (271)
Q Consensus 165 ~ 165 (271)
.
T Consensus 264 ~ 264 (278)
T 1dcq_A 264 R 264 (278)
T ss_dssp C
T ss_pred C
Confidence 3
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.85 E-value=1.5e-21 Score=136.39 Aligned_cols=109 Identities=28% Similarity=0.287 Sum_probs=72.8
Q ss_pred CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChH
Q psy8012 7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYD 86 (271)
Q Consensus 7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~ 86 (271)
.+.|.+|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+..++.++
T Consensus 3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~----L~~A~~~~~~~~--------------------- 57 (115)
T 2l6b_A 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTP----LHLAAKNGHAEI--------------------- 57 (115)
T ss_dssp -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCT----THHHHTTTCHHH---------------------
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH----HHHHHHcCcHHH---------------------
Confidence 4678889999999999999999999999988888777777777 444333333322
Q ss_pred HHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcH
Q psy8012 87 EVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTA 141 (271)
Q Consensus 87 ~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~ 141 (271)
+++|++.|++++.++..|.||||+|+..++.+++++|+++|++++..+..+.+|
T Consensus 58 -~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 58 -VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp -HHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred -HHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 344444555666666666666666666666666666666666666666655554
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.78 E-value=9.3e-19 Score=121.18 Aligned_cols=91 Identities=33% Similarity=0.441 Sum_probs=84.2
Q ss_pred ccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHH
Q psy8012 99 NVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLL 178 (271)
Q Consensus 99 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~ 178 (271)
...+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~ 95 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXAQDK-FGKTAFD 95 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccc-CCCcHHH
Confidence 44577899999999999999999999999999999999999999999998 999999999999999999998 9999999
Q ss_pred HH-hcCCchHHHHH
Q psy8012 179 HA-GKGAREVNTVL 191 (271)
Q Consensus 179 ~A-~~~~~~~~~~L 191 (271)
+| ..++.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99 99999999887
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=8.9e-18 Score=116.20 Aligned_cols=92 Identities=20% Similarity=0.189 Sum_probs=59.2
Q ss_pred CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChH
Q psy8012 7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYD 86 (271)
Q Consensus 7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~ 86 (271)
...+.+|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+..++.++
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tp----Lh~A~~~~~~~~--------------------- 72 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTP----LHLAARNGHLEV--------------------- 72 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHTTCHHH---------------------
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH----HHHHHHcCCHHH---------------------
Confidence 3456778888888888888888888888888877777777777 444443333333
Q ss_pred HHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHH
Q psy8012 87 EVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124 (271)
Q Consensus 87 ~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L 124 (271)
+++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus 73 -v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 73 -VKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp -HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred -HHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 3444445566666666677777777777776666654
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=54.49 E-value=10 Score=19.57 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.2
Q ss_pred HHHHHHhCCHHHHHHHHH
Q psy8012 17 IAIAIQIGDPQIVKELQN 34 (271)
Q Consensus 17 L~~A~~~g~~~~~~~Ll~ 34 (271)
+..||..|+++.++.|-.
T Consensus 17 iyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 567888999998887753
No 116
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=33.10 E-value=76 Score=26.38 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=41.2
Q ss_pred HHHHHhCCHHHHHHHHHCCCCCCch--------------hhcccchHHHHHHHHHHHHhHHHHHHHHHcC
Q psy8012 18 AIAIQIGDPQIVKELQNHGAQIDKE--------------IYSKNKAAARIAHSALELEERKAINDLLRLN 73 (271)
Q Consensus 18 ~~A~~~g~~~~~~~Ll~~g~~~~~~--------------~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g 73 (271)
+..+..|+...|+..+..|-+++-+ -..|.|- +|+|++..+.+++..|+..+
T Consensus 27 c~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tl----vhlair~~r~~~l~~ll~~~ 92 (454)
T 3zrh_A 27 CVGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTL----VHLAIRFQRQDMLAILLTEV 92 (454)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCH----HHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchh----hhhhhhhhhhhHHHHhhhcc
Confidence 3456789999999999888766522 2358888 99999999999999999743
No 117
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=22.63 E-value=3.5e+02 Score=22.89 Aligned_cols=130 Identities=13% Similarity=0.031 Sum_probs=63.0
Q ss_pred HHHHHHhCCHHHHH----HHHHCCCCCCchhhcccchHHHHHHHHHH--------------HHhHHHHHHHHHcCcHH--
Q psy8012 17 IAIAIQIGDPQIVK----ELQNHGAQIDKEIYSKNKAAARIAHSALE--------------LEERKAINDLLRLNLDF-- 76 (271)
Q Consensus 17 L~~A~~~g~~~~~~----~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~--------------~~~~~~~~~L~~~g~~~-- 76 (271)
|..+++.|+++-+. .+.+.|..++... .+. |-.++. ..-.++.+.+...|..+
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t---yn~----Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYH---YNV----LLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH---HHH----HHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH---HHH----HHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 55667788875544 4445687776533 222 333321 11245556666666432
Q ss_pred ------HHHHHhcChHH-HHHH----HhcCCCCccCCCCCCcHHHHHHHhCCHHH----HHHHHHCCCCccccCCCCCcH
Q psy8012 77 ------LKNVRSNKYDE-VKKN----IEDGACINVSSERCGSALIYAAWKGYEEI----VDLLLDNGADVNFKSATGFTA 141 (271)
Q Consensus 77 ------l~~a~~~~~~~-~~~l----l~~~~~~~~~~~~g~t~l~~a~~~~~~~~----~~~Ll~~~~~~~~~~~~~~t~ 141 (271)
+...+..+..+ +..+ .+.|..++... -++.+...+..|..+- ++.+.+.|..++... .+.
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t---y~~ 180 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE---LAA 180 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH---HHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH---HHH
Confidence 55555566555 3333 34555554332 1234445566676543 344445666555432 233
Q ss_pred HHHHHHhCCCHHHHHHH
Q psy8012 142 LHMACRFHDDDSIVRKL 158 (271)
Q Consensus 142 l~~a~~~~~~~~~~~~L 158 (271)
|.-+....|..+-+..+
T Consensus 181 Li~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKT 197 (501)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHH
Confidence 33333323665544333
No 118
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=20.13 E-value=2.5e+02 Score=20.17 Aligned_cols=131 Identities=14% Similarity=0.116 Sum_probs=77.7
Q ss_pred CCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH---HHHHHhcChHH-H
Q psy8012 13 DHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF---LKNVRSNKYDE-V 88 (271)
Q Consensus 13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~---l~~a~~~~~~~-~ 88 (271)
-.+=+-.|++.|+++....+.+.. +... -+ .++-..|...|+.++++....+-.++ +.+....|+.+ +
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l---~~~~--~W---k~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKL---NDSI--TW---ERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---CCHH--HH---HHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHh---CCHH--HH---HHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence 355678899999998877766431 1111 11 11234567789999999999887776 33444444444 5
Q ss_pred HHHHhcCCCCccCCCCCCcHHHHHHHhCCHH-HHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh-CCCC
Q psy8012 89 KKNIEDGACINVSSERCGSALIYAAWKGYEE-IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR-HGAY 164 (271)
Q Consensus 89 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~-~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~-~g~~ 164 (271)
+.+-+.. .....-+.+++.+...|+.+ +++.|.+.|--.. +..+|..+ +..++.+.+++ .|.+
T Consensus 80 ~kla~iA----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~e--------A~~~A~t~-g~~~~a~~~~~~~~~~ 144 (177)
T 3mkq_B 80 SKMQNIA----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL--------AYAVAKAN-GDEAAASAFLEQAEVD 144 (177)
T ss_dssp HHHHHHH----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH--------HHHHHHHT-TCHHHHHHHHHHTTCC
T ss_pred HHHHHHH----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHH--------HHHHHHHc-CcHHHHHHHHHHhCCc
Confidence 5553221 01122345777887888865 6677766542111 34556666 88888887764 3443
Done!