RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8012
(271 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 80.5 bits (199), Expect = 4e-19
Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
+ + VK +E+GA +N + L AA G+ EIV LLL+ GADVN + G
Sbjct: 15 ASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGN 74
Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
T LH+A R + D +V+ LL+HGA N D K G+TPL A G EV +LL
Sbjct: 75 TPLHLAARNGNLD-VVKLLLKHGADVNARD-KDGRTPLHLAAKNGHLEVVKLLL 126
Score = 71.3 bits (175), Expect = 1e-15
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ L AA G+ E+V LLL+NGADVN K G T LH+A + + IV+ LL GA N
Sbjct: 9 TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAK-NGHLEIVKLLLEKGADVN 67
Query: 167 VVDGKTGKTPLLHA 180
D K G TPL A
Sbjct: 68 ARD-KDGNTPLHLA 80
Score = 63.2 bits (154), Expect = 1e-12
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 11 YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLL 70
+ P+ +A G ++VK L +GA ++ + H A
Sbjct: 5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTP----LHLA------------- 47
Query: 71 RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
++ + VK +E GA +N + + L AA G ++V LLL +GAD
Sbjct: 48 ---------AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD 98
Query: 131 VNFKSATGFTALHMACRFHDDDSIVRKLL 159
VN + G T LH+A + + +V+ LL
Sbjct: 99 VNARDKDGRTPLHLAAK-NGHLEVVKLLL 126
Score = 43.1 bits (102), Expect = 2e-05
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 21/134 (15%)
Query: 132 NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTV 190
N + G T LH+A + +V+ LL +GA N D G+TPL A G E+ +
Sbjct: 1 NARDEDGRTPLHLAAS-NGHLEVVKLLLENGADVNAKD-NDGRTPLHLAAKNGHLEIVKL 58
Query: 191 LLYFIHEIFKLMANNDT-----TILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDA 245
LL ++ + +T LD +K L+ G D N ++
Sbjct: 59 LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA------DVNA-------RDKD 105
Query: 246 GETILDIAKKRGFP 259
G T L +A K G
Sbjct: 106 GRTPLHLAAKNGHL 119
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 78.1 bits (193), Expect = 1e-18
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
++ + VK +E GA +N+ +AL AA G EIV LLL++GADVN K G
Sbjct: 5 AKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGN 62
Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVD 169
TALH+A R + + IV+ LL HGA N+ D
Sbjct: 63 TALHLAARNGNLE-IVKLLLEHGADINLKD 91
Score = 59.6 bits (145), Expect = 1e-11
Identities = 34/72 (47%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 109 LIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 168
L AA G E+V LLL+ GADVN TALH+A R + + IV+ LL HGA N
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAAR-NGNLEIVKLLLEHGADVNAK 57
Query: 169 DGKTGKTPLLHA 180
D K G T L A
Sbjct: 58 D-KDGNTALHLA 68
Score = 48.0 bits (115), Expect = 1e-07
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 28/116 (24%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
+A + G+ ++VK L GA ++ A +A
Sbjct: 3 LAAKNGNLELVKLLLEKGADVN---LGDTDTALHLA------------------------ 35
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
R+ + VK +E GA +N + +AL AA G EIV LLL++GAD+N K
Sbjct: 36 -ARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 63.8 bits (155), Expect = 1e-11
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 15/176 (8%)
Query: 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
E P+ AI+ GD +IV+ HGA I N +I H L + A +D+++
Sbjct: 34 ETTTPLIDAIRSGDAKIVELFIKHGADI-------NHINTKIPHPLLTAIKIGA-HDIIK 85
Query: 72 LNLD-----FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD 126
L +D + + + D +K ++ G +N+ + L YA KG E + +L +
Sbjct: 86 LLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE 145
Query: 127 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 182
GADVN + G +H+A + H+ I++ LL GAY NV D G++PL +A +
Sbjct: 146 YGADVNIEDDNGCYPIHIAIK-HNFFDIIKLLLEKGAYANVKD-NNGESPLHNAAE 199
Score = 52.7 bits (126), Expect = 6e-08
Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 34/195 (17%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQ--------IDKE-----------IYSKNKAAARIAHS 56
P+ AI+IG I+K L ++G I+K+ + K+ H
Sbjct: 71 PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHY 130
Query: 57 ALELEERKAINDLLRLNLDF-LKN----------VRSNKYDEVKKNIEDGACINVSSERC 105
A++ + ++I L D +++ ++ N +D +K +E GA NV
Sbjct: 131 AIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG 190
Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
S L AA G + LL+D+G + K GFT LH A H+ +I +LL + A
Sbjct: 191 ESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI-IHNRSAI--ELLINNASI 247
Query: 166 NVVDGKTGKTPLLHA 180
N D G TPL HA
Sbjct: 248 NDQD-IDGSTPLHHA 261
Score = 32.2 bits (73), Expect = 0.27
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 119 EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLL 178
+I+D+LL + AD++ K G + A ++ + D +++ ++ + D L
Sbjct: 269 DIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLE 328
Query: 179 HAGKGAREVNTVLLYFIHE 197
H ++ N FI E
Sbjct: 329 H--IEIKD-NKEFSDFIKE 344
Score = 32.2 bits (73), Expect = 0.30
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
G CIN+S + + LI A G +IV+L + +GAD+N
Sbjct: 25 GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADIN 62
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 62.3 bits (152), Expect = 4e-11
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 74 LDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIY---AAWKGYEEIVDLLLDNGAD 130
D+L N + +EV++ + GA +N E + L + + ++IV LLL+ GAD
Sbjct: 16 YDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD 75
Query: 131 VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
VN GFT LH+ +++ L++ GA N D K G+TPL
Sbjct: 76 VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKD-KVGRTPL 121
Score = 54.3 bits (131), Expect = 2e-08
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALI--YAAWKGYEEIVDLLLDNGADVNF 133
+L D V+ +E GA +N ERCG + Y +++ LL+ GADVN
Sbjct: 54 YLHYSSEKVKDIVRLLLEAGADVNAP-ERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA 112
Query: 134 KSATGFTALHMACR-FHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
K G T LH+ F+ + ++R LLR GA N +D G TPL
Sbjct: 113 KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALD-LYGMTPL 156
Score = 40.8 bits (96), Expect = 4e-04
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEE--IVDLLLDNGADVNF 133
L++ + V++ I G + + L A + +V LL G +N
Sbjct: 194 HLQSFKPRA-RIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252
Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA--GKGAREVNTVL 191
++ G T LH A F ++ R+L+ GA N V G TPL R V L
Sbjct: 253 RNRYGQTPLHYAAVF-NNPRACRRLIALGADINAVS-SDGNTPLSLMVRNNNGRAVRAAL 310
Score = 39.2 bits (92), Expect = 0.002
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGY---EEIVDLLLDNGADVNFKSATGFTALHMACRF 148
I+ GA +N + G ++ G+ +++ LLL GADVN G T L + +
Sbjct: 104 IKAGADVNAKDK-VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS 162
Query: 149 HD-DDSIVRKLLRHGAYYNVVD 169
+ + ++R L+ GA VD
Sbjct: 163 RNANVELLRLLIDAGADVYAVD 184
Score = 33.8 bits (78), Expect = 0.072
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 65 AINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124
A + L L + S K V + G IN + + L YAA L
Sbjct: 217 ATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRL 276
Query: 125 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 160
+ GAD+N S+ G T L + R +++ VR L
Sbjct: 277 IALGADINAVSSDGNTPLSLMVR-NNNGRAVRAALA 311
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 61.2 bits (149), Expect = 8e-11
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 17 IAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF 76
AI+ + IV+ L ++GA + KN + H LE + +L+L +D
Sbjct: 112 YAISKKSNSYSIVEYLLDNGA----NVNIKNSDGENLLHLYLESNKID--LKILKLLID- 164
Query: 77 LKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA 136
K V N + V + G IN+ + L YA + E V LLD GA+ N +
Sbjct: 165 -KGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNK 223
Query: 137 TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD 169
G T LH+A ++ + I + LL +G +
Sbjct: 224 YGDTPLHIAILNNNKE-IFKLLLNNGPSIKTII 255
Score = 49.7 bits (119), Expect = 5e-07
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 30/160 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ +A + + +VK L ++GA I+ N+ L+
Sbjct: 38 PLYLAKEARNIDVVKILLDNGADINS----------------------STKNNSTPLH-- 73
Query: 76 FLKNVRSNKYDE---VKKNIEDGACINVSSERCGSALIYAAWK--GYEEIVDLLLDNGAD 130
+L N++ N D VK +E GA +N + L+YA K IV+ LLDNGA+
Sbjct: 74 YLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN 133
Query: 131 VNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVD 169
VN K++ G LH+ D I++ L+ G N +
Sbjct: 134 VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKN 173
Score = 36.6 bits (85), Expect = 0.010
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 55 HSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAW 114
+ ++ + + +L + D VK +++GA IN S++ + L Y +
Sbjct: 19 KYIIMEDDLNDYSYKKPVLPLYLA-KEARNIDVVKILLDNGADINSSTKNNSTPLHYLSN 77
Query: 115 KGYE-----EIVDLLLDNGADVNFKSATGFTALHMA-CRFHDDDSIVRKLLRHGAYYNVV 168
Y EIV LLL+ GA+VN G T L A + + SIV LL +GA N+
Sbjct: 78 IKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIK 137
Query: 169 DGKTGKTPLLHA 180
+ LLH
Sbjct: 138 NSDGE--NLLHL 147
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 56.4 bits (135), Expect = 2e-09
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 66 INDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLL 125
+D L + + E+ + + L AA KG ++IV LLL
Sbjct: 34 PSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLL 93
Query: 126 DNGADVNFKSATGFTALHMACRFHDDD----SIVRKLLRHGAYY--NVVDGKTGKTPLLH 179
+GADVN K A G T LH+A + + + LL GA N + + G TPL
Sbjct: 94 ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHW 153
Query: 180 A-GKGAREVNTVLL 192
A G ++ +LL
Sbjct: 154 AALNGDADIVELLL 167
Score = 43.3 bits (101), Expect = 4e-05
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 85 YDEVKKNIEDGAC---INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTA 141
+ K +E GA N+ E + L +AA G +IV+LLL+ GAD N +++ G TA
Sbjct: 124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTA 183
Query: 142 LHMACRFHDDDSIVRKLLRHGAYYNV 167
L A + + +V+ LL G + ++
Sbjct: 184 LDPAAKNGRIE-LVKLLLDKGLHLSL 208
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 43.4 bits (103), Expect = 2e-06
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL 159
+AL AA G E+V LL+ G D+N G TALH+A + + +++ LL
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLE-VLKLLL 54
Score = 37.6 bits (88), Expect = 3e-04
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLL 125
S + + VK +E G IN + E +AL AA G E++ LLL
Sbjct: 9 AISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 46.4 bits (110), Expect = 7e-06
Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 25/169 (14%)
Query: 25 DPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNK 84
+ +I K L ++GA I+ + K +AL L L L +
Sbjct: 146 EAEITKLLLSYGADINMKDRHKGN-------TALHYATENKDQRLTELLLSY-------- 190
Query: 85 YDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 144
GA +N+ + S L +A + IV +LL+NGA + + G T LH+
Sbjct: 191 ----------GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHI 240
Query: 145 ACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLY 193
+ + D I++ LL HG N G T L + K R++ +L Y
Sbjct: 241 SVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLEY 289
Score = 33.7 bits (77), Expect = 0.095
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 85 YDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 144
YD +K +E G +N S G ++++ K E + LLL+ GAD+N ++ T L
Sbjct: 248 YDILKLLLEHGVDVNAKSYILGLTALHSSIKS-ERKLKLLLEYGADINSLNSYKLTPLSS 306
Query: 145 ACRFHDDDSIVRKLLRH 161
A + + +I R L+ +
Sbjct: 307 AVKQYLCINIGRILISN 323
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 45.7 bits (108), Expect = 1e-05
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 121 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+LL GAD N + G T LH+AC + +VR LL GA ++D K GKTPL A
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIAC-ANGHVQVVRVLLEFGADPTLLD-KDGKTPLELA 155
Query: 181 GK-GAREVNTVLLYFIHEIFKLMAN 204
+ G REV +L F+L AN
Sbjct: 156 EENGFREVVQLLSRHSQCHFELGAN 180
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 43.9 bits (103), Expect = 6e-05
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 82 SNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE-EIVDLLLDNGADVNFKSATGFT 140
+N Y VK I+ GA +N ++ + L YA K + +++++LLDNGADVN +
Sbjct: 419 TNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQY 478
Query: 141 ALHMACRFHDDDSIVRKLLRHGA 163
L +A +H IV LL +GA
Sbjct: 479 PLLIALEYH---GIVNILLHYGA 498
Score = 40.4 bits (94), Expect = 8e-04
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEI-VDLLLDNGADVNFKSATGFTALHMACRFHDDDS 153
GA I S++ G+AL +A + V L+D GA+VN K+ T LH AC+ +
Sbjct: 398 GADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLD 457
Query: 154 IVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLY 193
++ LL +GA N ++ + + PLL A + VN +L Y
Sbjct: 458 VIEMLLDNGADVNAINIQN-QYPLLIALEYHGIVNILLHY 496
Score = 38.5 bits (89), Expect = 0.003
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 7/181 (3%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAIND----LLR 71
PI A + G+ ++V L ++GA ++ I + + A + ++ KAI D + +
Sbjct: 181 PIHYAAERGNAKMVNLLLSYGADVNI-IALDDLSVLECAVDSKNIDTIKAIIDNRSNINK 239
Query: 72 LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWK-GYEEIVDLLLDNGAD 130
+L LK +R+ + + G +N + + L +A+ +V LL+ GAD
Sbjct: 240 NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD 299
Query: 131 VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTV 190
VN K+ G T L++ + D +R L+ GA N D + TPL A R + V
Sbjct: 300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAAD-RLYITPLHQASTLDRNKDIV 358
Query: 191 L 191
+
Sbjct: 359 I 359
Score = 38.1 bits (88), Expect = 0.004
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+E GA +N C + + YAA +G ++V+LLL GADVN + + L A +
Sbjct: 165 LEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNI 224
Query: 152 DSI 154
D+I
Sbjct: 225 DTI 227
Score = 37.0 bits (85), Expect = 0.009
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 88 VKKNIEDGACINVSSERCGSALIYAAWKGYE-EIVDLLLDNGADVNFKSATGFTALHMAC 146
V K +E GA +N + + + L A GY+ E + L+ GADVN T LH A
Sbjct: 290 VPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAS 349
Query: 147 RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAG--KGAREVNTVLLY 193
+ IV LL GA N D KTP+ +A +NT+L Y
Sbjct: 350 TLDRNKDIVITLLELGANVNARD-YCDKTPIHYAAVRNNVVIINTLLDY 397
Score = 33.5 bits (76), Expect = 0.11
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
D V +E GA +N + + YAA + I++ LLD GAD+ S TALH A
Sbjct: 356 DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415
Query: 146 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 182
+ V+ L+ GA N + K TPL +A K
Sbjct: 416 LCGTNPYMSVKTLIDRGANVNSKN-KDLSTPLHYACK 451
Score = 31.2 bits (70), Expect = 0.67
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 120 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 168
I ++LL+ GADVN K T +H A + +V LL +GA N++
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAER-GNAKMVNLLLSYGADVNII 207
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 39.1 bits (92), Expect = 6e-05
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFK 134
+ L AA G+ E+V LLL+ GADVN +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAR 31
Score = 36.0 bits (84), Expect = 7e-04
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVD 169
G T LH+A R + +V+ LL GA N D
Sbjct: 2 GNTPLHLAAR-NGHLEVVKLLLEAGADVNARD 32
Score = 26.7 bits (60), Expect = 1.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQID 40
P+ +A + G ++VK L GA ++
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVN 29
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 43.1 bits (101), Expect = 1e-04
Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 31/191 (16%)
Query: 5 YDP-YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEER 63
+P + Y+ PI +A++ D + +K L HGA D K H A+E +
Sbjct: 26 INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD----VKYPDIESELHDAVEEGDV 81
Query: 64 KAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE-EIVD 122
KA+ +LL L F +V G ++ A + +I+
Sbjct: 82 KAVEELLDLG-KFADDVFYKD---------------------GMTPLHLATILKKLDIMK 119
Query: 123 LLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-G 181
LL+ GAD + + F+ LH+A D I L+ H A ++ D G TPL+ A
Sbjct: 120 LLIARGADPDIPNTDKFSPLHLAVMMGDIKGI-ELLIDHKACLDIEDC-CGCTPLIIAMA 177
Query: 182 KGAREVNTVLL 192
KG + +LL
Sbjct: 178 KGDIAICKMLL 188
Score = 41.5 bits (97), Expect = 3e-04
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 13/173 (7%)
Query: 7 PYVPYED-HKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELE---- 61
P V Y D + A++ GD + V+EL + G D Y +A +L+
Sbjct: 61 PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKL 120
Query: 62 --ERKAINDLLRLNLDFLKN----VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWK 115
R A D+ N D V ++ I+ AC+++ + LI A K
Sbjct: 121 LIARGADPDIP--NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAK 178
Query: 116 GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 168
G I +LLD+GA++++ G A ++ IVR ++ GA N++
Sbjct: 179 GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM 231
Score = 34.2 bits (78), Expect = 0.057
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 119 EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLL 178
+I LLD G + NF+ G + + +A +F D ++I + L++HGA + V ++ L
Sbjct: 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI-KLLMKHGAIPD-VKYPDIESELH 73
Query: 179 HAGKGAREVNTVLLY----FIHEIFKLMANND---TTILDRLDEMKSLILEG 223
A + L F ++F TIL +LD MK LI G
Sbjct: 74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG 125
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 38.5 bits (90), Expect = 2e-04
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 124 LLDNG-ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
LL++G D+N G T LH+A ++ + +V+ LL+ G N+ D G T L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALE-LVQWLLKPGVDLNLRD-SDGLTALDLA 56
Score = 38.1 bits (89), Expect = 2e-04
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 92 IEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
+E G +++ G + L AA G E+V LL G D+N + + G TAL +A
Sbjct: 2 LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 33.3 bits (77), Expect = 0.005
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVN 132
+ L AA G E+V LLLD GAD+N
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 31.0 bits (71), Expect = 0.038
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGA 163
G T LH+A + + +V+ LL GA
Sbjct: 2 GRTPLHLAAE-NGNLEVVKLLLDKGA 26
Score = 24.9 bits (55), Expect = 5.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDK 41
P+ +A + G+ ++VK L + GA I+
Sbjct: 5 PLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 32.2 bits (74), Expect = 0.015
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVN 132
+ L AA G E+V LLL++GAD+N
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADIN 29
Score = 29.9 bits (68), Expect = 0.099
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNV 167
G T LH+A R + + +V+ LL HGA N
Sbjct: 2 GNTPLHLAAR-NGNLELVKLLLEHGADINA 30
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 35.1 bits (81), Expect = 0.035
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 24/139 (17%)
Query: 62 ERKAINDLLRLNLDFLKNVRSN------------KYDEVKKNIEDGACINVSS--ERCGS 107
++ A+ LLR D + R N K VK I++GA +N E
Sbjct: 15 DKNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLC 74
Query: 108 ALI---YAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD----SIVRKLLR 160
A++ ++IV LLL GAD+N K+ G + + C ++ + ++R LL
Sbjct: 75 AVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPI--VCFIYNSNINNCDMLRFLLS 132
Query: 161 HGAYYNVVDGKTGKTPLLH 179
G N V G LLH
Sbjct: 133 KGINVNDVKNSRGYN-LLH 150
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 34.5 bits (79), Expect = 0.067
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTAL 142
+ L AA KGYE+ V +LL + +V+ + A G TAL
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595
Score = 34.1 bits (78), Expect = 0.089
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMAC-RFHDDDSIVRKLLRHGAYY 165
S L+ A G +++ LL D + + G T LH+A + ++D +V LL+H
Sbjct: 527 SNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLV--LLKHACNV 584
Query: 166 NVVDGKTGKTPLLHA-GKGAREVNTVLLYFIH 196
++ D G T L +A ++ +L +F
Sbjct: 585 HIRDAN-GNTALWNAISAKHHKIFRILYHFAS 615
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 33.3 bits (76), Expect = 0.077
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 119 EIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDS--IVRKLLRHGAYYNVVDGKTGKT 175
EI+ L++NGADVNFK+ +ALH F+ + I++ L+ G+ D + GK
Sbjct: 67 EILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEED-EDGKN 125
Query: 176 PL 177
L
Sbjct: 126 LL 127
Score = 27.9 bits (62), Expect = 4.8
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 118 EEIVDLLLDNGADVNFKSATGFTALHM-ACRFHDDDSIVRKLLRHG 162
EI+ +L+D+G+ + + G LHM C F+ ++++ L+ G
Sbjct: 103 PEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG 148
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 33.4 bits (76), Expect = 0.11
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 106 GSALIY-AAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
G L+Y A + GY ++V LL+NGA+VN + G+T L +A
Sbjct: 221 GRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVA 261
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 33.4 bits (76), Expect = 0.11
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 98 INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157
IN+ +R + L A + +V LLL++G+DVN +S G+T + +A + +++
Sbjct: 445 INMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKM 504
Query: 158 LLRH 161
LL H
Sbjct: 505 LLCH 508
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 32.7 bits (74), Expect = 0.12
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 14/132 (10%)
Query: 31 ELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKK 90
E + +++ I KN H A R D++ F++ +
Sbjct: 2 ESPHFMTCLEEMIAEKNSEGENFFHEA----ARCGCFDIIARFTPFIRG-DCHAAALNAT 56
Query: 91 NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK-SATGFTALHMACRFH 149
+ CI++++E+ + A E I+D L++ GAD+N + G TALH+A
Sbjct: 57 DDAGQMCIHIAAEK------HEAQLAAE-IIDHLIELGADINAQEMLEGDTALHLAAHRR 109
Query: 150 DDDSIVRKLLRH 161
D D + L
Sbjct: 110 DHD-LAEWLCCQ 120
>gnl|CDD|206145 pfam13975, gag-asp_proteas, gag-polyprotein putative aspartyl
protease. This family of putative aspartyl proteases is
found pre-dominantly in retroviral proteins.
Length = 72
Score = 30.7 bits (70), Expect = 0.12
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 103 ERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR 156
R G + + G E V L+D GA +F S + L + S VR
Sbjct: 4 GRDGLVTVEVSIGGVE--VKALVDTGATHSFISESLAARLGLPLEADQAPSRVR 55
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 31.2 bits (71), Expect = 0.68
Identities = 46/175 (26%), Positives = 64/175 (36%), Gaps = 38/175 (21%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+AL AA + EIV LLL+ GA V ++ F HG
Sbjct: 130 TALHLAAHRQNYEIVKLLLERGASVPARACGDF------FVKSQG----VDSFYHGES-- 177
Query: 167 VVDGKTGKTPL-LHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTK 225
PL A G+ + +L +I L A++ L L M++ +
Sbjct: 178 ---------PLNAAACLGSPSIVALLSEDPADI--LTADSLGNTLLHLLVMENEFKAEYE 226
Query: 226 EFGPGDYNNFSL-----------LKVTKNDAGETILDIAKKRGFPLLEELEKKLA 269
E Y NF+L L+V N G T L +A K G +L L KLA
Sbjct: 227 ELSCQMY-NFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRL--KLA 278
Score = 28.5 bits (64), Expect = 4.9
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 4 PYDPYV--PYEDHKPIAIAIQIGDPQIVKELQNHGAQI 39
D Y + +A + +IVK L GA +
Sbjct: 117 ANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV 154
Score = 27.7 bits (62), Expect = 8.0
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 20/80 (25%)
Query: 83 NKYDEVKKNIEDGACINVSSERCG-----------------SALIYAAWKGYEEIVDLLL 125
Y+ VK +E GA + R S L AA G IV LL
Sbjct: 139 QNYEIVKLLLERGASVPA---RACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLS 195
Query: 126 DNGADVNFKSATGFTALHMA 145
++ AD+ + G T LH+
Sbjct: 196 EDPADILTADSLGNTLLHLL 215
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 31.0 bits (70), Expect = 0.72
Identities = 41/157 (26%), Positives = 59/157 (37%), Gaps = 30/157 (19%)
Query: 28 IVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKY-- 85
IVK N GA ++ + I L N++ K+
Sbjct: 53 IVKLFINLGANVNGLDNEYSTPLCTI-----------------------LSNIKDYKHML 89
Query: 86 DEVKKNIEDGACINVSSERCGSALIYAAWKGY---EEIVDLLLDNGADVNFKSATGFTAL 142
D VK IE+GA IN + + L GY EI+ +++NGAD GFT L
Sbjct: 90 DIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTML 149
Query: 143 --HMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
++ H D I++ LL G N + K L
Sbjct: 150 QVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTL 186
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular
trafficking and secretion].
Length = 858
Score = 30.3 bits (68), Expect = 1.2
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 1 MGDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALEL 60
M D Y P VP ++H A+ P+++ L+ G + ++ + AA+ S L+L
Sbjct: 299 MEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS----SCLQL 354
Query: 61 EERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACI--NVSSERCGSALIYAAWKGYE 118
+ + ++R L F V N E N E +V C L +
Sbjct: 355 FAQLKGDKIMRPVLGF---VEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALP 411
Query: 119 EIVDLLLDNGADVNFKSATGFTAL 142
I + + D+ V +A F A+
Sbjct: 412 GIENEMSDSCLWVKSTTAWCFGAI 435
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 29.9 bits (67), Expect = 1.5
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 119 EIVDLLLDNGADVNFKSATGFTALH-MACRFHDDDSIVRKLLRHGAYYNVVD 169
+V L G +++K + G T LH R + I++ L +G N D
Sbjct: 298 SVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD 349
>gnl|CDD|239389 cd03115, SRP, The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria
and the endoplasmic reticulum in eukaryotes. SRP
recognizes N-terminal sighnal sequences of newly
synthesized polypeptides at the ribosome. The
SRP-polypeptide complex is then targeted to the
membrane by an interaction between SRP and its cognated
receptor (SR). In mammals, SRP consists of six protein
subunits and a 7SL RNA. One of these subunits is a 54
kd protein (SRP54), which is a GTP-binding protein that
interacts with the signal sequence when it emerges from
the ribosome. SRP54 is a multidomain protein that
consists of an N-terminal domain, followed by a central
G (GTPase) domain and a C-terminal M domain.
Length = 173
Score = 28.3 bits (64), Expect = 2.7
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 29 VKELQNHGAQIDKEIYS--KNKAAARIAHSALELEERKAINDLL-----RLNLD 75
+++L+ G Q+ ++ + K IA A+E + + ++ RL +D
Sbjct: 44 IEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDVVIVDTAGRLQID 97
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 28.9 bits (64), Expect = 3.6
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 161
C A+ YA YE +VD LL N V+ G T + R ++ I+ KL+ H
Sbjct: 323 CEDAMYYAVLSEYETMVDYLLFNHFSVDS-VVNGHTCMSECVRL-NNPVILSKLMLH 377
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 28.8 bits (64), Expect = 3.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 98 INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTAL 142
IN + S L Y +V+ L+DNGAD+N + G T +
Sbjct: 403 INKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCI 447
>gnl|CDD|214929 smart00947, Pro_CA, Carbonic anhydrase. Carbonic anhydrases (CA)
are zinc metalloenzymes which catalyze the reversible
hydration of carbon dioxide. In Escherichia coli, CA
(gene cynT) is involved in recycling carbon dioxide
formed in the bicarbonate-dependent decomposition of
cyanate by cyanase (gene cynS). By this action, it
prevents the depletion of cellular bicarbonate. In
photosynthetic bacteria and plant chloroplast, CA is
essential to inorganic carbon fixation. Prokaryotic and
plant chloroplast CA are structurally and evolutionary
related and form a family distinct from the one which
groups the many different forms of eukaryotic CA's.
Length = 154
Score = 27.5 bits (62), Expect = 5.4
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 16/82 (19%)
Query: 104 RCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR--FHD------DDSIV 155
CG+ + AA ++D L+ ++ + D +
Sbjct: 71 DCGA--VKAALDDEPGLIDNWLERIRPARERALEELGDVDALEELNVRDQVENLRTSPAI 128
Query: 156 RKLLR------HGAYYNVVDGK 171
R+ + HG Y++ GK
Sbjct: 129 REAVAKGKLKVHGWVYDIETGK 150
>gnl|CDD|232844 TIGR00143, hypF, [NiFe] hydrogenase maturation protein HypF. A
previously described regulatory effect of HypF
mutatation is attributable to loss of activity of a
regulatory hydrogenase. A zinc finger-like region
CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported
the regulatory hypothesis. However, more recent work
(PUBMED:11375153) shows the direct effect is on the
activity of expressed hydrogenases with nickel/iron
centers, rather than on expression [Protein fate,
Protein modification and repair].
Length = 711
Score = 27.8 bits (62), Expect = 6.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 100 VSSERCGSALIYAAWKGYEEIVDLL------LDNGADVNFKSATGFTALHMACRFHDDDS 153
++ RCG L + + G+ E D L L G + K GF H+AC +D+
Sbjct: 141 IACPRCGPQLNFVSRGGHAEQDDALLEAAKLLKKGKIIAIKGIGGF---HLACDARNDEV 197
Query: 154 IVRKLLRHG 162
+ R LR
Sbjct: 198 VERLRLRKN 206
>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic.
This model represents eukaryotic protein disulfide
isomerases retained in the endoplasmic reticulum (ER)
and closely related forms. Some members have been
assigned alternative or additional functions such as
prolyl 4-hydroxylase and
dolichyl-diphosphooligosaccharide-protein
glycotransferase. Members of this family have at least
two protein-disulfide domains, each similar to
thioredoxin but with the redox-active disulfide in the
motif PWCGHCK, and an ER retention signal at the extreme
C-terminus (KDEL, HDEL, and similar motifs).
Length = 462
Score = 27.7 bits (62), Expect = 8.3
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 171 KTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPG 230
+ PL+ G T YF ++ N LD +E+++ LE K+F
Sbjct: 212 RAESLPLV----GEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRGK 267
Query: 231 DYN 233
N
Sbjct: 268 FVN 270
>gnl|CDD|200466 cd11327, AmyAc_Glg_debranch_2, Alpha amylase catalytic domain
found in glycogen debranching enzymes. Debranching
enzymes facilitate the breakdown of glycogen through
glucosyltransferase and glucosidase activity. These
activities are performed by a single enzyme in mammals,
yeast, and some bacteria, but by two distinct enzymes
in Escherichia coli and other bacteria. Debranching
enzymes perform two activities,
4-alpha-D-glucanotransferase (EC 2.4.1.25) and
amylo-1,6-glucosidase (EC 3.2.1.33).
4-alpha-D-glucanotransferase catalyzes the
endohydrolysis of 1,6-alpha-D-glucoside linkages at
points of branching in chains of 1,4-linked
alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase
catalyzes the endohydrolysis of 1,6-alpha-D-glucoside
linkages at points of branching in chains of 1,4-linked
alpha-D-glucose residues. The catalytic triad (DED),
which is highly conserved in other debranching enzymes,
is not present in this group. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A;
C is the C-terminal extension characterized by a Greek
key. The majority of the enzymes have an active site
cleft found between domains A and B where a triad of
catalytic residues (Asp, Glu and Asp) performs
catalysis. Other members of this family have lost the
catalytic activity as in the case of the human 4F2hc,
or only have 2 residues that serve as the catalytic
nucleophile and the acid/base, such as Thermus A4
beta-galactosidase with 2 Glu residues (GH42) and human
alpha-galactosidase with 2 Asp residues (GH31). The
family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 478
Score = 27.6 bits (62), Expect = 9.1
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 66 INDLLRLNLDFLKNVRSNKYDEVKKNIED 94
I D L LN DF + + +++V++ ++
Sbjct: 70 IADQLELNPDFFPDGKKKTFEDVEELVKK 98
>gnl|CDD|234678 PRK00175, metX, homoserine O-acetyltransferase; Provisional.
Length = 379
Score = 27.5 bits (62), Expect = 9.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 118 EEIVDLLLDNGADVNF 133
EIVD LL GADV++
Sbjct: 329 REIVDALLAAGADVSY 344
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.394
Gapped
Lambda K H
0.267 0.0832 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,324,815
Number of extensions: 1404340
Number of successful extensions: 1991
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1933
Number of HSP's successfully gapped: 111
Length of query: 271
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 176
Effective length of database: 6,723,972
Effective search space: 1183419072
Effective search space used: 1183419072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.9 bits)