RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8012
(271 letters)
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 87.5 bits (218), Expect = 2e-21
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+E GA ++ ++ SAL A+ GY +IV LLL+ D+N G T L A R H
Sbjct: 56 LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV 115
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
V LL GA +G TP+ A G R+V V+
Sbjct: 116 K--CVEALLARGADLTTEA-DSGYTPMDLAVALGYRKVQQVIE 155
Score = 83.2 bits (207), Expect = 6e-20
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 81 RSNKYDEVKKNIEDGA-CINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
+ D++K+++ G +N ER + LI+A+ G E V LL+ GAD + +
Sbjct: 11 AQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE 70
Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+AL +A + D IV LL N+ D G TPLL+A
Sbjct: 71 SALSLASTGGYTD--IVGLLLERDVDINIYD-WNGGTPLLYA 109
Score = 81.3 bits (202), Expect = 4e-19
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+E IN+ G+ L+YA + + V+ LL GAD+ ++ +G+T + +A +
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTP 176
+ + + H + P
Sbjct: 149 K--VQQVIENHILKLFQSN-LVPADP 171
Score = 73.2 bits (181), Expect = 3e-16
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGAD-VNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY 165
++ A +G + + L G + VN GFT L A F + VR LL GA
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIE--TVRFLLEWGADP 62
Query: 166 NVVDGKTGKTPLLHA 180
+++ K ++ L A
Sbjct: 63 HILA-KERESALSLA 76
Score = 36.6 bits (86), Expect = 0.003
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 138 GFTALHMACRF-HDDDSIVRKLLRHGA-YYNVVDGKTGKTPLLHA 180
++H D +++ LR G N D + G TPL+ A
Sbjct: 2 DSLSIHQLAAQGELD--QLKEHLRKGDNLVNKPD-ERGFTPLIWA 43
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 85.9 bits (214), Expect = 6e-21
Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+++GA + + SAL A KGY +IV +LLD G DVN G T L A H
Sbjct: 56 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV 115
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
V+ LL GA + +G + A G R V V+
Sbjct: 116 K--CVKMLLESGADPTIET-DSGYNSMDLAVALGYRSVQQVIE 155
Score = 85.1 bits (212), Expect = 1e-20
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
+ + IE IN + E + L++AA G +V+ LL NGAD +
Sbjct: 12 AQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRES 71
Query: 141 ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
AL +AC + D IV+ LL G N D G TPLL+A
Sbjct: 72 ALSLACSKGYTD--IVKMLLDCGVDVNEYD-WNGGTPLLYA 109
Score = 77.4 bits (192), Expect = 9e-18
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 166
++ A +G + ++ +N GFT L A +V LL++GA
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIA--VVEFLLQNGADPQ 63
Query: 167 VVDGKTGKTPLLHA-GKGAREVNTVLL 192
++ K ++ L A KG ++ +LL
Sbjct: 64 LLG-KGRESALSLACSKGYTDIVKMLL 89
Score = 47.0 bits (113), Expect = 7e-07
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
+E GA + ++ +++ A GY + ++ + +
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164
Score = 39.3 bits (93), Expect = 4e-04
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 138 GFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
++H + + N D + G TPL+ A
Sbjct: 3 NSLSVHQLAAQGEML--YLATRIEQENVINHTD-EEGFTPLMWA 43
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 84.8 bits (211), Expect = 6e-21
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
I++ + L AA +G E V LL+ GAD N + G + + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQ--V 59
Query: 155 VRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 192
LL HGA N D T +H A +G + VL
Sbjct: 60 AELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLH 98
Score = 75.2 bits (186), Expect = 3e-17
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
+ + V++ +E GA N + + G ++ +LLL +GA+ N T
Sbjct: 21 ARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLT 79
Query: 141 -ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
+H A R D + L R GA +V D G+ P+ A +G R++ L
Sbjct: 80 RPVHDAAREGFLD--TLVVLHRAGARLDVCD-AWGRLPVDLAEEQGHRDIARYLH 131
Score = 72.1 bits (178), Expect = 3e-16
Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 33/151 (21%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
+A A G + V++L GA + N+ R
Sbjct: 15 GLATAAARGQVETVRQLLEAGADPNA----LNRFGRRPIQVM------------------ 52
Query: 76 FLKNVRSNKYDEVKKN-IEDGACINVSSER-CGSALIYAAWKGYEEIVDLLLDNGADVNF 133
+V + + GA N + + AA +G+ + + +L GA ++
Sbjct: 53 ------MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106
Query: 134 KSATGFTALHMACRF-HDDDSIVRKLLRHGA 163
A G + +A H D I R L
Sbjct: 107 CDAWGRLPVDLAEEQGHRD--IARYLHAATG 135
Score = 43.6 bits (104), Expect = 7e-06
Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 27/108 (25%)
Query: 24 GDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFLKNVRS 82
G Q+ + L HGA+ + + A H A R
Sbjct: 55 GSAQVAELLLLHGAEPNC----ADPATLTRPVHDA----------------------ARE 88
Query: 83 NKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
D + GA ++V + A +G+ +I L D
Sbjct: 89 GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 87.9 bits (219), Expect = 9e-21
Identities = 37/184 (20%), Positives = 58/184 (31%), Gaps = 17/184 (9%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
+ L G+ + K + I L +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS---MDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAV 57
Query: 79 N--------VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
+ ++ I G +N+ + S L A G+ V +LL +GA
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 131 VNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVN 188
VN +A T L AC D V LL+HGA +V +P+ A +G E
Sbjct: 118 VNGVTADWHTPLFNACVSGSWD--CVNLLLQHGA--SVQPESDLASPIHEAARRGHVECV 173
Query: 189 TVLL 192
L+
Sbjct: 174 NSLI 177
Score = 81.8 bits (203), Expect = 2e-18
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
I G I+ G+ L A V LL++GADVN + + LH R +
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASE 235
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHE 197
+ + L+ GA + GK P+ E L+ E
Sbjct: 236 E--LACLLMDFGADTQAKN-AEGKRPVELV---PPESPLAQLFLERE 276
Score = 80.6 bits (200), Expect = 4e-18
Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 32/166 (19%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ A G VK L HGAQ++ +A
Sbjct: 95 PLHEACLGGHLSCVKILLKHGAQVNG----VTADWHTPLFNA------------------ 132
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
S +D V ++ GA + S+ S + AA +G+ E V+ L+ G +++ K
Sbjct: 133 ----CVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGGNIDHKI 187
Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ T L++AC V+KLL GA +V GK +PL
Sbjct: 188 SHLGTPLYLACENQQRA--CVKKLLESGA--DVNQGKGQDSPLHAV 229
Score = 65.2 bits (160), Expect = 1e-12
Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 31/149 (20%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
PI A + G + V L +G ID K + A
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGNIDH----KISHLGTPLYLA------------------ 197
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ + VKK +E GA +N + S L EE+ LL+D GAD K+
Sbjct: 198 ----CENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASEELACLLMDFGADTQAKN 252
Query: 136 ATGFTALHMACRFHDDDSIVRKLL-RHGA 163
A G + + + + + L R GA
Sbjct: 253 AEGKRPVELVPP---ESPLAQLFLEREGA 278
Score = 37.5 bits (88), Expect = 0.003
Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
++ GA + + + + L GA +
Sbjct: 242 MDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLP 281
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 86.2 bits (214), Expect = 2e-20
Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 23/185 (12%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
+ + + V++ +++ + +E +AL A IVD L+ GA+VN + G+T
Sbjct: 30 LTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWT 89
Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA---GKGAREVNTVLLYFIHE 197
LH A +D I L++HGA G T +G + L + +
Sbjct: 90 PLHCAASCNDTV-ICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADC-ATYLADVEQ 147
Query: 198 IFKLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDI 252
LM + L + DE+ E + ++ ET
Sbjct: 148 SMGLMNSGAVYALWDYSAEFGDELSFREGESVT-------------VLRRDGPEETDWWW 194
Query: 253 AKKRG 257
A G
Sbjct: 195 AALHG 199
Score = 75.0 bits (185), Expect = 2e-16
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 88 VKKNIEDGACINVSSERC---GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 144
++ + + L+ AA G E+V + D + + G TALH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 145 ACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
A + IV L+ GA N D G TPL A
Sbjct: 61 AICGANYS--IVDFLITAGANVNSPD-SHGWTPLHCA 94
Score = 44.2 bits (105), Expect = 1e-05
Identities = 20/144 (13%), Positives = 32/144 (22%), Gaps = 24/144 (16%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ A D I L HGA I S A E
Sbjct: 90 PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE---------------- 133
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
D + + + + AL + + +E + V +
Sbjct: 134 -------GYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFREGESVTVLRRD 185
Query: 136 ATGFTALHMACRFHDDDSIVRKLL 159
T A + + R
Sbjct: 186 GPEETDWWWAALHGQEGYVPRNYF 209
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 84.8 bits (211), Expect = 2e-20
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
I GA INV + + L AA G+ +IV LL AD+N + G LH AC + D
Sbjct: 59 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
+ L+ +GA ++ + K G+ P+ A +
Sbjct: 119 Q--VAEDLVANGALVSICN-KYGEMPVDKAKAPLRELLRERAE 158
Score = 82.5 bits (205), Expect = 1e-19
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 80 VRSNKYDEVKKNIEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
R V+ +++ +N + S L +A +G +V++L+ GA +N +
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 139 FTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
T LH+A H D IV+KLL++ A N V+ + G PL +A
Sbjct: 73 DTPLHLAASHGHRD--IVQKLLQYKADINAVN-EHGNVPLHYA 112
Score = 70.9 bits (175), Expect = 3e-15
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
D V+K ++ A IN +E L YA + G +++ + L+ NGA V+ + G
Sbjct: 81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 140
Query: 141 ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGK 171
+ A + + + + G N + K
Sbjct: 141 PVDKAKAPLREL--LRERAEKMGQNLNRIPYK 170
Score = 69.4 bits (171), Expect = 1e-14
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGA-DVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY 165
+ +G V L LDN D+N GF+ LH ACR +V L+ GA
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSA--VVEMLIMRGARI 65
Query: 166 NVVDGKTGKTPLLH--AGKGAREVNTVLL 192
NV++ + TP LH A G R++ LL
Sbjct: 66 NVMN-RGDDTP-LHLAASHGHRDIVQKLL 92
Score = 37.0 bits (87), Expect = 0.002
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYY-NVVDGKTGKTPLLH--AGKGAREVNTVLL 192
+ CR + VR L + N D G +P LH +G V +L+
Sbjct: 5 FMDDIFTQCR-EGNAVAVRLWLDNTENDLNQGD-DHGFSP-LHWACREGRSAVVEMLI 59
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 86.8 bits (216), Expect = 2e-20
Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 16/179 (8%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
+ +A ++ L ++ S L + +
Sbjct: 81 ALHLACRVRAHTCACVLLQPRPSHPRDA------------SDTYLTQSQDCTPDTSHAPA 128
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ + + + +E ++ + + + + L A E+V LL D GAD+N
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188
Query: 136 AT-GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
T G T LH+A S++ LL+ GA G+TPL A + + +L
Sbjct: 189 PTCGRTPLHLAVE-AQAASVLELLLKAGADPTARM-YGGRTPLGSALLRPNPILARLLR 245
Score = 76.4 bits (189), Expect = 1e-16
Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 27/169 (15%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAINDLLR 71
+A +G+ V++L GA + + A R+ +L
Sbjct: 51 LAAILGEASTVEKLYAAGAGVLV----AERGGHTALHLACRVRA--------HTCACVL- 97
Query: 72 LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
L+ S+ D + + A + + E D +
Sbjct: 98 -----LQPRPSHPRDASDTYLTQSQDCTPDTSH-APAAVDSQPNPENEEEPRDEDWRLQL 151
Query: 132 NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
++ G T LH+A D + +VR L GA N + G+TPL A
Sbjct: 152 EAENYDGHTPLHVAVIHKDAE-MVRLLRDAGADLNKPEPTCGRTPLHLA 199
Score = 75.7 bits (187), Expect = 3e-16
Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 15/112 (13%)
Query: 94 DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDD 152
+++ ++ +AL AA G V+ L GA V G TALH+ACR
Sbjct: 34 GHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT- 92
Query: 153 SIVRKLLRHGAYYNV------------VDGKTGKTPLLHAGKGAREVNTVLL 192
LL+ + T P + E
Sbjct: 93 -CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143
Score = 75.3 bits (186), Expect = 3e-16
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGAD---VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
AL A +E +D LL A ++ ++ G TALH+A + V KL GA
Sbjct: 12 ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS-TVEKLYAAGAG 70
Query: 165 YNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
V + + G T L A A VLL
Sbjct: 71 VLVAE-RGGHTALHLACRVRAHTCACVLL 98
Score = 62.9 bits (154), Expect = 8e-12
Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 27/130 (20%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFL 77
+A+ D ++V+ L++ GA ++K R H A
Sbjct: 164 VAVIHKDAEMVRLLRDAGADLNK----PEPTCGRTPLHLA-------------------- 199
Query: 78 KNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
V + ++ ++ GA + L A + + LL +GA
Sbjct: 200 --VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257
Query: 138 GFTALHMACR 147
+ +
Sbjct: 258 KLSPCSSSGS 267
Score = 43.3 bits (103), Expect = 3e-05
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 131 VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT--GKTPLLHA 180
+ + G TALH+A + + LL A + +D + G+T L A
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEP-FLDFLLGFSAGHEYLDLQNDLGQTALHLA 52
Score = 31.4 bits (72), Expect = 0.27
Identities = 4/37 (10%), Positives = 7/37 (18%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
GA S + + D +
Sbjct: 245 RAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 88.7 bits (221), Expect = 3e-20
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
VK ++ GA NVS+ + + L AA G+ E+ LL N A VN K+
Sbjct: 22 SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ 81
Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
T LH A R H + +V+ LL + A N+ G TPL A +G E LL
Sbjct: 82 TPLHCAARIGHTN--MVKLLLENNANPNLAT-TAGHTPLHIAAREGHVETVLALL 133
Score = 87.9 bits (219), Expect = 5e-20
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 30/166 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ +A + G ++ K L + A+++ + +K+ H A
Sbjct: 50 PLHMAARAGHTEVAKYLLQNKAKVNAK--AKDDQTP--LHCA------------------ 87
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
R + VK +E+ A N+++ + L AA +G+ E V LL+ A +
Sbjct: 88 ----ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
GFT LH+A ++ + LL A+ N K G TPL A
Sbjct: 144 KKGFTPLHVAAKYGKVR--VAELLLERDAHPNAAG-KNGLTPLHVA 186
Score = 87.9 bits (219), Expect = 5e-20
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 28/165 (16%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ +A+ + IVK L G ++ H A
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL----HIA------------------ 219
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ N+ + + ++ G N S + + L AA +G+ E+V LLL A+ N +
Sbjct: 220 ----AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+G T LH+ + + L++HG + + G TPL A
Sbjct: 276 KSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDATT-RMGYTPLHVA 318
Score = 86.0 bits (214), Expect = 2e-19
Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 30/166 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ IA + G + V L A K H A
Sbjct: 116 PLHIAAREGHVETVLALLEKEASQAC----MTKKGFTPLHVA------------------ 153
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ K + +E A N + + + L A +IV LLL G + +
Sbjct: 154 ----AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209
Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G+T LH+A + + + R LL++G N G TPL A
Sbjct: 210 WNGYTPLHIAAKQNQVE--VARSLLQYGGSANAES-VQGVTPLHLA 252
Score = 85.6 bits (213), Expect = 3e-19
Identities = 44/166 (26%), Positives = 65/166 (39%), Gaps = 30/166 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ +A +G IVK L GA + N H A
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNV----SNVKVETPLHMA------------------ 54
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
R+ + K +++ A +N ++ + L AA G+ +V LLL+N A+ N +
Sbjct: 55 ----ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G T LH+A R H + V LL A + K G TPL A
Sbjct: 111 TAGHTPLHIAAREGHVE--TVLALLEKEASQACMT-KKGFTPLHVA 153
Score = 85.2 bits (212), Expect = 3e-19
Identities = 42/178 (23%), Positives = 65/178 (36%), Gaps = 29/178 (16%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ +A + G ++ + L A + K H A
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHPNA----AGKNGLTPLHVA------------------ 186
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
V N D VK + G + + + L AA + E+ LL G N +S
Sbjct: 187 ----VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
G T LH+A + + +V LL A N+ + K+G TPL +G V VL+
Sbjct: 243 VQGVTPLHLAAQEGHAE-MVALLLSKQANGNLGN-KSGLTPLHLVAQEGHVPVADVLI 298
Score = 84.5 bits (210), Expect = 6e-19
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDS 153
G E + L A++ G+ IV LL GA N + T LHMA R H +
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE-- 61
Query: 154 IVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
+ + LL++ A N K +TPL A G + +LL
Sbjct: 62 VAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLL 100
Score = 83.7 bits (208), Expect = 1e-18
Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 31/179 (17%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ IA + ++ + L +G + ++ H A
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANA----ESVQGVTPLHLA------------------ 252
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ + V + A N+ ++ + L A +G+ + D+L+ +G V+ +
Sbjct: 253 ----AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
G+T LH+A + + +V+ LL+H A N K G +PL A +G ++ T+LL
Sbjct: 309 RMGYTPLHVASHYGNIK--LVKFLLQHQADVNAKT-KLGYSPLHQAAQQGHTDIVTLLL 364
Score = 82.5 bits (205), Expect = 4e-18
Identities = 43/179 (24%), Positives = 63/179 (35%), Gaps = 31/179 (17%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ A +IG +VK L + A + + H A
Sbjct: 83 PLHCAARIGHTNMVKLLLENNANPNLA--TTAGHTP--LHIA------------------ 120
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
R + V +E A +++ + L AA G + +LLL+ A N
Sbjct: 121 ----AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176
Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
G T LH+A + D IV+ LL G + G TPL A + EV LL
Sbjct: 177 KNGLTPLHVAVHHNNLD--IVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLL 232
Score = 70.2 bits (173), Expect = 5e-14
Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 33/166 (19%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNL 74
P+ + Q G + L HG +D + H A
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVMVDA----TTRMG-YTPLHVA----------------- 318
Query: 75 DFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
VK ++ A +N ++ S L AA +G+ +IV LLL NGA N
Sbjct: 319 -----SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 135 SATGFTALHMACRFHDDDSIVRKLLR---HGAYYNVVDGKTGKTPL 177
S+ G T L +A R + L ++ V D K +
Sbjct: 374 SSDGTTPLAIAKRLGYIS-VTDVLKVVTDETSFVLVSD-KHRMSFP 417
Score = 53.3 bits (129), Expect = 3e-08
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 127 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G +G T LH+A IV+ LL+ GA NV + +TPL A
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLP-IVKNLLQRGASPNVSN-VKVETPLHMA 54
Score = 51.0 bits (123), Expect = 1e-07
Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 39/148 (26%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
+A G+ ++VK L H A ++ K K H A
Sbjct: 317 VASHYGNIKLVKFLLQHQADVNA----KTKLGYSPLHQA--------------------- 351
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL---LDNGADVNFKS 135
+ D V +++GA N S + L A GY + D+L D + V
Sbjct: 352 -AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 410
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGA 163
+ V ++L
Sbjct: 411 KHRMSFPE----------TVDEILDVSE 428
Score = 29.0 bits (66), Expect = 1.9
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 46/124 (37%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAIND 68
P+ A Q G IV L +GA ++ + A R+ + ++ D
Sbjct: 347 PLHQAAQQGHTDIVTLLLKNGASPNE----VSSDGTTPLAIAKRLGY--------ISVTD 394
Query: 69 LLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
+L K ++ + + V S++ + E VD +LD
Sbjct: 395 VL------------------KVVTDETSFVLV-SDKHR--------MSFPETVDEILDVS 427
Query: 129 ADVN 132
D
Sbjct: 428 EDEG 431
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 82.1 bits (204), Expect = 7e-20
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
V+ +++G+ NV + L A G+ ++V+LLL + A VN +
Sbjct: 19 IKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS 78
Query: 141 ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
LH A + H D IV+ LL +GA N V+ G P+ +
Sbjct: 79 PLHDAAKNGHVD--IVKLLLSYGASRNAVN-IFGLRPVDYT 116
Score = 74.4 bits (184), Expect = 6e-17
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 166
L A+ KG V+ LL NG+D N K G+T LH AC H +V LL+H A N
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK--VVELLLQHKALVN 70
Query: 167 VVDGKTGKTPLLHA-GKGAREVNTVLL 192
+PL A G ++ +LL
Sbjct: 71 TTG-YQNDSPLHDAAKNGHVDIVKLLL 96
Score = 47.4 bits (114), Expect = 4e-07
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 128 GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G D + G T LH+A D V LL++G+ NV D G TPL A
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIP-SVEYLLQNGSDPNVKD-HAGWTPLHEA 50
Score = 34.7 bits (81), Expect = 0.008
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
++ D VK + GA N + + Y + + ++ L N +
Sbjct: 84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 82.5 bits (205), Expect = 7e-20
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+E A S E L AA +G E V LL+ GA+ N ++ G + +
Sbjct: 1 MEPAA--GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR 58
Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 192
+ LL HGA N D T +H A +G + VL
Sbjct: 59 --VAELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLH 98
Score = 77.5 bits (192), Expect = 6e-18
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
+ +EV+ +E GA N + + G + +LLL +GA+ N T
Sbjct: 21 ARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLT 79
Query: 141 -ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
+H A R D + L R GA +V D G+ P+ A G R+V L
Sbjct: 80 RPVHDAAREGFLD--TLVVLHRAGARLDVRD-AWGRLPVDLAEELGHRDVARYLR 131
Score = 77.5 bits (192), Expect = 7e-18
Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 40/176 (22%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
+A A G + V+ L GA + N R
Sbjct: 15 WLATAAARGRVEEVRALLEAGANPNA----PNSYGRRPIQVM------------------ 52
Query: 76 FLKNVRSNKYDEVKKN-IEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNF 133
V + + GA N + + AA +G+ + + +L GA ++
Sbjct: 53 ------MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106
Query: 134 KSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREV 187
+ A G + +A H D + R L G G + A +G ++
Sbjct: 107 RDAWGRLPVDLAEELGHRD--VARYLRAAAG------GTRGSNHARIDAAEGPSDI 154
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 84.4 bits (210), Expect = 8e-20
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 31/167 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
I A Q G + +EL G + + +K + H A AIN
Sbjct: 12 DIVKATQYGIYERCRELVEAGYDVRQ----PDKENVTLLHWA-------AIN-------- 52
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDNGADVNFK 134
N+ D VK I GA ++ S L +A +G+ +V L+ GAD +
Sbjct: 53 -------NRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105
Query: 135 SATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G + +H+A +F H IV L+ G +++D + G TPL+ A
Sbjct: 106 DGEGCSCIHLAAQFGHTS--IVAYLIAKGQDVDMMD-QNGMTPLMWA 149
Score = 84.4 bits (210), Expect = 1e-19
Identities = 34/166 (20%), Positives = 49/166 (29%), Gaps = 27/166 (16%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNL 74
+ A +VK + GA +D+ H A
Sbjct: 45 LLHWAAINNRIDLVKYYISKGAIVDQ----LGGDLNSTPLHWA----------------- 83
Query: 75 DFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
R V + ++ GA ++ S + AA G+ IV L+ G DV+
Sbjct: 84 -----TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G T L A R LL N+ D T L A
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA 184
Score = 77.9 bits (193), Expect = 2e-17
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 98 INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVR 156
+ + ++ A G E L++ G DV T LH A D +V+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRID--LVK 59
Query: 157 KLLRHGAYYNVVDGKTGKTPLLHA 180
+ GA + + G TPL A
Sbjct: 60 YYISKGAIVDQLGGDLNSTPLHWA 83
Score = 74.8 bits (185), Expect = 4e-16
Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 32/168 (19%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ A + G +V +L +GA + H A
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSL----IDGEGCSCIHLA------------------ 116
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE-EIVDLLLDNGADVNFK 134
+ V I G +++ + + L++AA++ + + LLL VN
Sbjct: 117 ----AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172
Query: 135 -SATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
TALH A + ++ LL GA + + G++ L A
Sbjct: 173 DKYHKNTALHWAVLAGNTT--VISLLLEAGANVDAQN-IKGESALDLA 217
Score = 68.2 bits (168), Expect = 7e-14
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 43/157 (27%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAIND 68
I +A Q G IV L G +D ++ AA
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQDVDM----MDQNGMTPLMWAAY---------------- 151
Query: 69 LLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDN 127
R++ D + + +N+ + + AL +A G ++ LLL+
Sbjct: 152 ------------RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199
Query: 128 GADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGA 163
GA+V+ ++ G +AL +A + + ++ L
Sbjct: 200 GANVDAQNIKGESALDLAKQRKNVW--MINHLQEARQ 234
Score = 42.8 bits (102), Expect = 3e-05
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 27/109 (24%)
Query: 27 QIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFLKNVRSNKY 85
+ L ++ +K A H A V +
Sbjct: 157 DPTRLLLTFNVSVNL----GDKYHKNTALHWA----------------------VLAGNT 190
Query: 86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
+ +E GA ++ + + SAL A + +++ L + +
Sbjct: 191 TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 84.4 bits (210), Expect = 1e-19
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
+A + P ++ L + A ++ ++N H A
Sbjct: 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA------------------ 123
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFK 134
V + + V+ +E GA I+ + G S LI+A +V LLL +GA+VN +
Sbjct: 124 ----VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 179
Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+G +ALH A +VR L+R GA ++ + TPL+ A
Sbjct: 180 MYSGSSALHSASGRGLLP-LVRTLVRSGADSSLKN-CHNDTPLMVA 223
Score = 76.0 bits (188), Expect = 1e-16
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
V + G +++ + + L A +V LL+ GA G TA H+AC
Sbjct: 29 VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 88
Query: 148 FHDDDSIVRKLLRHGAYY----NVVDGKTGKTPLLHA 180
H + +R LL A + G T L A
Sbjct: 89 -HRSPTCLRALLDSAAPGTLDLEARN-YDGLTALHVA 123
Score = 72.1 bits (178), Expect = 3e-15
Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 34/180 (18%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
+A+ P +V+ L GA ++ AH A
Sbjct: 52 LAVITTLPSVVRLLVTAGASPMA----LDRHGQTAAHLA--------------------- 86
Query: 79 NVRSNKYDEVKKNIEDGAC----INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
++ ++ A + + +AL A +E V LLL+ GAD++
Sbjct: 87 -CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145
Query: 135 SAT-GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
G + L A + +V+ LL+HGA N +G + L A G+G + L+
Sbjct: 146 DIKSGRSPLIHAVENNSLS-MVQLLLQHGANVNAQM-YSGSSALHSASGRGLLPLVRTLV 203
Score = 66.3 bits (163), Expect = 3e-13
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 108 ALIYAAWKGYEEIVDLLLD----NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 163
L A +G V L++ G +++ + T LH+A S+VR L+ GA
Sbjct: 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI-TTLPSVVRLLVTAGA 70
Query: 164 YYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
+D + G+T A + LL
Sbjct: 71 SPMALD-RHGQTAAHLACEHRSPTCLRALL 99
Score = 35.5 bits (83), Expect = 0.011
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 131 VNFKSATGFTALHMACRFHDDD---SIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G T LH+A + +V + G ++ + +TPL A
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLA 53
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 85.6 bits (213), Expect = 2e-19
Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 26/173 (15%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAINDLLR 71
A ++ L +HGA N A E +
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTL----VNCHGKSAVDMAPT--------PELRERLTYEF 177
Query: 72 LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE---EIVDLLLDNG 128
L+ R +VKK + + +AL A + ++ +LLL G
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237
Query: 129 ADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
A+VN K+ T LH+A H+D ++ L +HGA N +D G+T L A
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHND--VMEVLHKHGAKMNALD-SLGQTALHRA 287
Score = 84.1 bits (209), Expect = 5e-19
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 81 RSNKYDEVKKN-IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
RS +++ + S R + L AA IV LLL +GADV+ K G
Sbjct: 33 RSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGL 92
Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
LH AC + H + + LL+HGA N +D TPL A K EV ++LL
Sbjct: 93 VPLHNACSYGHYE--VTELLLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSLLL 144
Score = 81.0 bits (201), Expect = 6e-18
Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 31/171 (18%)
Query: 13 DHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKA---AARIAHSALELEERKAINDL 69
+ A + D VK+ K+ S A A H +RK + +L
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH-----PKRKQVAEL 232
Query: 70 LRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA 129
L + GA +N ++ + L AA + + +++++L +GA
Sbjct: 233 L---------------------LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 130 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+N + G TALH A R LL +G+ +++ G T
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQ-TCRLLLSYGSDPSIIS-LQGFTAAQMG 320
Score = 75.2 bits (186), Expect = 8e-16
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
D ++ + GA +N +AL AA G+ + LLL G+D + S GF
Sbjct: 255 AERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF 314
Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
TA M V+++L + LL A
Sbjct: 315 TAAQMGNE------AVQQILSEST---PMRTSDVDYRLLEA 346
Score = 72.5 bits (179), Expect = 6e-15
Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 47/182 (25%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
+A +IV+ L HGA + K+K H+A
Sbjct: 64 LAAGYNRVRIVQLLLQHGADVHA----KDKGGLVPLHNA--------------------- 98
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
Y+ + ++ GAC+N + L AA K E+ LLL +GAD + G
Sbjct: 99 -CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG 157
Query: 139 FTALHMACR--------------------FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLL 178
+A+ MA D + V+K L ++ +T L
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP-QSHETALH 216
Query: 179 HA 180
A
Sbjct: 217 CA 218
Score = 56.3 bits (137), Expect = 2e-09
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 117 YEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTP 176
+ + L D A L A R +++ ++ L + D TP
Sbjct: 3 FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASD-GRKSTP 61
Query: 177 LLHA-GKGAREVNTVLL 192
L A G + +LL
Sbjct: 62 LHLAAGYNRVRIVQLLL 78
Score = 39.0 bits (92), Expect = 0.001
Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 33/129 (25%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
+A + +++ L HGA+++ + H A
Sbjct: 253 VAAERAHNDVMEVLHKHGAKMNA----LDSLGQTALHRA--------------------- 287
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
+ + + G+ ++ S + +A E V +L +
Sbjct: 288 -ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTS--DV 339
Query: 139 FTALHMACR 147
L A +
Sbjct: 340 DYRLLEASK 348
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 82.4 bits (204), Expect = 2e-19
Identities = 26/194 (13%), Positives = 53/194 (27%), Gaps = 44/194 (22%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCG---SALIYAAWKGYEEIVDLLLDNGADVNFKSA 136
Y++ + E G S + L + +I L++ GAD+ ++
Sbjct: 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK 73
Query: 137 TGFTALHMACRF-----HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVL 191
G T + + + L GA + K K +
Sbjct: 74 EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY-KPYKIVVFKN----------- 121
Query: 192 LYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPG-DYNNFSLLKVTKNDAGETIL 250
+ N + + K + + G K+ G T L
Sbjct: 122 ----------IFNYFVDENEMIPLYKLIFSQ------SGLQLL-------IKDKWGLTAL 158
Query: 251 DIAKKRGFPLLEEL 264
+ K+ P+ ++
Sbjct: 159 EFVKRCQKPIALKM 172
Score = 74.7 bits (184), Expect = 1e-16
Identities = 26/182 (14%), Positives = 49/182 (26%), Gaps = 36/182 (19%)
Query: 11 YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLL 70
+++ ++ A +G + EL G + + E R I+ L
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFL 61
Query: 71 RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE------EIVDLL 124
I GA I ++ + G E+ +
Sbjct: 62 ---------------------INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100
Query: 125 LDNGADVNFKSATGFTALHMACRFHDDDS-----IVRKLLRH-GAYYNVVDGKTGKTPLL 178
L+ GAD+ + + D + + + G + D K G T L
Sbjct: 101 LEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD-KWGLTALE 159
Query: 179 HA 180
Sbjct: 160 FV 161
Score = 42.4 bits (100), Expect = 4e-05
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
+ G + + + +AL + + ++ D N K
Sbjct: 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 33.9 bits (78), Expect = 0.030
Identities = 5/47 (10%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ + + + A + +L G K+ +L+
Sbjct: 2 NAMSEYRTVSAAAMLGTYE-DFLELFEKGYEDKESV---LKSNILYD 44
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 80.9 bits (201), Expect = 2e-19
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
DEVK + G +N + E L YAA G EI++ LL GAD+N T L A
Sbjct: 21 DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80
Query: 146 CRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREV 187
H V+ LL GA V G T + + +
Sbjct: 81 VYEGHVS--CVKLLLSKGADKTVKG-PDGLTAFEATDNQAIKAL 121
Score = 75.9 bits (188), Expect = 1e-17
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGA 163
C ++A G + V + G DVN G LH A + I+ LL GA
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLE--ILEFLLLKGA 64
Query: 164 YYNVVDGKTGKTPLLHA 180
N D K TPLL A
Sbjct: 65 DINAPD-KHHITPLLSA 80
Score = 64.7 bits (159), Expect = 2e-13
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 26/133 (19%)
Query: 15 KPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL 74
K A++ GD VK+ G +++ + K H A
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPL----HYA----------------- 47
Query: 75 DFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
+ + ++ + GA IN + + L+ A ++G+ V LLL GAD K
Sbjct: 48 -----ADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Query: 135 SATGFTALHMACR 147
G TA
Sbjct: 103 GPDGLTAFEATDN 115
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 80.5 bits (200), Expect = 2e-19
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
R+ + VK +E GA +N + + L AA G+ E+V LLL+ GADVN K G T
Sbjct: 11 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70
Query: 141 ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
LH+A R H + +V+ LL GA N D K G+TPL A
Sbjct: 71 PLHLAARNGHLE--VVKLLLEAGADVNAKD-KNGRTPLHLA 108
Score = 74.3 bits (184), Expect = 4e-17
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 166
L AA G+ E+V LLL+ GADVN K G T LH+A R H + +V+ LL GA N
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE--VVKLLLEAGADVN 62
Query: 167 VVDGKTGKTPLLHA 180
D K G+TPL A
Sbjct: 63 AKD-KNGRTPLHLA 75
Score = 72.4 bits (179), Expect = 3e-16
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+E GA +N + + L AA G+ E+V LLL+ GADVN K G T LH+A R H
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114
Query: 151 DDSIVRKLLRHGAY 164
+ +V+ LL GAY
Sbjct: 115 E--VVKLLLEAGAY 126
Score = 40.8 bits (97), Expect = 7e-05
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 138 GFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G T LH+A R H + +V+ LL GA N D K G+TPL A
Sbjct: 2 GRTPLHLAARNGHLE--VVKLLLEAGADVNAKD-KNGRTPLHLA 42
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 81.4 bits (202), Expect = 4e-19
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK-SATGFTALHMACRF-HDDD 152
++ E +AL++ A G ++ V LL + GAD++ + G TALHMA + +
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE- 124
Query: 153 SIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
+V L+ GA V D + G T L A +
Sbjct: 125 -VVEALVELGADIEVED-ERGLTALELAREILKTTPKGNPM 163
Score = 69.8 bits (172), Expect = 7e-15
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 92 IEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-H 149
E GA ++ R G AL AA E+V+ L++ GAD+ + G TAL +A
Sbjct: 96 AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 155
Query: 150 DDDSIVRKLLRHGAYYNVVD 169
++ G +
Sbjct: 156 TT--PKGNPMQFGRRIGLEK 173
Score = 63.7 bits (156), Expect = 1e-12
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 167
+ G+ ADV + T A R D+ + +LL +
Sbjct: 17 EYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQ-ALSQLL-EDRDVDA 71
Query: 168 VDGKTGKTPLLHA-GKGAREVNTVLL 192
VD + G+T LL G G+ + +L
Sbjct: 72 VD-ENGRTALLFVAGLGSDKCVRLLA 96
Score = 41.7 bits (99), Expect = 6e-05
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA 136
+E GA I V ER +AL A + G + +
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174
Score = 32.1 bits (74), Expect = 0.095
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 127 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAR 185
N + + G + + A +VV +TP A K
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWK-DGHSPSWVPSSYIAA--DVVS--EYETPWWTAARKADE 57
Query: 186 EVNTVLL 192
+ + LL
Sbjct: 58 QALSQLL 64
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 82.5 bits (205), Expect = 7e-19
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
I G +N+ + S L A G+ V +LL +GA VN +A T L AC
Sbjct: 23 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 82
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
D V LL+HGA +V +P+ A +G E L+
Sbjct: 83 D--CVNLLLQHGA--SVQPESDLASPIHEAARRGHVECVNSLI 121
Score = 81.7 bits (203), Expect = 1e-18
Identities = 41/183 (22%), Positives = 66/183 (36%), Gaps = 47/183 (25%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAINDLLR 71
A G VK L HGAQ++ A +LL
Sbjct: 42 EACLGGHLSCVKILLKHGAQVNG----VTADWHTPLFNACVSGS--------WDCVNLL- 88
Query: 72 LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
++ GA + S+ S + AA +G+ E V+ L+ G ++
Sbjct: 89 --------------------LQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNI 127
Query: 132 NFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNT 189
+ K + T L++AC V+KLL GA +V GK +PL + E+
Sbjct: 128 DHKISHLGTPLYLACENQQRA--CVKKLLESGA--DVNQGKGQDSPLHAVARTASEELAC 183
Query: 190 VLL 192
+L+
Sbjct: 184 LLM 186
Score = 80.6 bits (200), Expect = 4e-18
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY 165
S + AA G++ + L+ G VN +A + LH AC H V+ LL+HGA
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS--CVKILLKHGAQV 62
Query: 166 NVVDGKTGKTPLLHA-GKGAREVNTVLL 192
N V TPL +A G+ + +LL
Sbjct: 63 NGVT-ADWHTPLFNACVSGSWDCVNLLL 89
Score = 79.8 bits (198), Expect = 7e-18
Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 32/178 (17%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
PI A + G + V L +G ID K + A
Sbjct: 104 PIHEAARRGHVECVNSLIAYGGNIDH----KISHLGTPLYLA------------------ 141
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ + VKK +E GA +N + S L A EE+ LL+D GAD K+
Sbjct: 142 ----CENQQRACVKKLLESGADVNQGKGQD-SPLHAVARTASEELACLLMDFGADTQAKN 196
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAG-KGAREVNTVLL 192
A G + + + + + L +++ G + ++ ++L
Sbjct: 197 AEGKRPVELVPP---ESPLAQLFLEREGPPSLMQ-LCRLRIRKCFGIQQHHKITKLVL 250
Score = 41.6 bits (99), Expect = 1e-04
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 137 TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ ++ +H A H +R L+ G N++ +PL A
Sbjct: 2 SDWSPMHEAA-IHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEA 43
Score = 38.6 bits (91), Expect = 0.001
Identities = 4/38 (10%), Positives = 11/38 (28%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA 129
+E ++ + + +I L+L
Sbjct: 217 LEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 82.9 bits (206), Expect = 9e-19
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 31/163 (19%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
+ IG ++ + K A + +A
Sbjct: 14 LKRWIGSETDLEPPVVKRKKTKV----KFDDGA-VFLAA--------------------- 47
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
S +EV + +E GA IN ++ +AL A ++V L++NGA++N G
Sbjct: 48 -CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 139 FTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ LH A + D I L+ GA+ V+ G TPL A
Sbjct: 107 WIPLHAAASCGYLD--IAEYLISQGAHVGAVN-SEGDTPLDIA 146
Score = 78.3 bits (194), Expect = 4e-17
Identities = 40/174 (22%), Positives = 61/174 (35%), Gaps = 25/174 (14%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSA---LELEERKA-IN 67
A G I + L + GA + N A A E+ + I
Sbjct: 112 AAASCGYLDIAEYLISQGAHVGA----VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167
Query: 68 DLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN 127
+ R D + ++ G+AL AA KGY E++ LL+
Sbjct: 168 AARKEE------ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221
Query: 128 GADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
DVN K G+T LH A + ++ R L+ + V+ K G+T A
Sbjct: 222 RYDVNIKDYDGWTPLHAAAHWGKEE--ACRILVENLCDMEAVN-KVGQTAFDVA 272
Score = 65.2 bits (160), Expect = 2e-12
Identities = 48/210 (22%), Positives = 66/210 (31%), Gaps = 56/210 (26%)
Query: 11 YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLL 70
++D A GD + V L GA I+ N H A I+
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLLERGADINY----ANVDGLTALHQA-------CID--- 83
Query: 71 RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
+ D VK +E+GA IN L AA GY +I + L+ GA
Sbjct: 84 ------------DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH 131
Query: 131 VNFKSATGFTALHMACRF------------HDDD--------------SIVRKLLRHGAY 164
V ++ G T L +A D + L
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191
Query: 165 YNVVDGKTGKTPLLH--AGKGAREVNTVLL 192
K+G T LH A KG EV +L+
Sbjct: 192 DVRHA-KSGGTA-LHVAAAKGYTEVLKLLI 219
Score = 64.1 bits (157), Expect = 3e-12
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 42/170 (24%)
Query: 98 INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157
+N +A + L + + +G TALH+A + +++
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE-VLKL 217
Query: 158 LLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMK 217
L++ N+ D G TPL A A+ + + +
Sbjct: 218 LIQARYDVNIKD-YDGWTPLHAA----------------------AHWG-----KEEACR 249
Query: 218 SLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK 267
L+ D N G+T D+A + LEEL+KK
Sbjct: 250 ILVENL------CDME-------AVNKVGQTAFDVADEDILGYLEELQKK 286
Score = 62.9 bits (154), Expect = 1e-11
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 98 INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157
+ ++ + W G E ++ + K G AC D + V +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTE-EVLR 58
Query: 158 LLRHGAYYNVVDGKTGKTPLLHA 180
LL GA N + G T L A
Sbjct: 59 LLERGADINYAN-VDGLTALHQA 80
Score = 34.0 bits (79), Expect = 0.036
Identities = 4/41 (9%), Positives = 13/41 (31%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
+E+ + ++ +A A + +L +
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHS 292
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 79.7 bits (198), Expect = 1e-18
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+++GA +N + L AA G+ EIV++LL NGADVN G T LH+A F H
Sbjct: 67 LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ IV LL++GA N D K GKT +
Sbjct: 127 E--IVEVLLKNGADVNAQD-KFGKTAFDIS 153
Score = 78.9 bits (196), Expect = 2e-18
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
R+ + DEV+ + +GA +N + L AA+ G+ EIV++LL NGADVN G T
Sbjct: 23 RAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMT 82
Query: 141 ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
L +A F H + IV LL++GA N D G TPL A
Sbjct: 83 PLRLAALFGHLE--IVEVLLKNGADVNAND-MEGHTPLHLA 120
Score = 75.9 bits (188), Expect = 3e-17
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 91 NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-H 149
+ G+ + L+ AA G ++ V +L+ NGADVN + A+G+T LH+A H
Sbjct: 7 HHHHGSDLG-------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGH 59
Query: 150 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ IV LL++GA N VD G TPL A
Sbjct: 60 LE--IVEVLLKNGADVNAVD-HAGMTPLRLA 87
Score = 62.0 bits (152), Expect = 4e-12
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+++GA +N + + L AA G+ EIV++LL NGADVN + G TA ++ ++
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 151 DDSIVRKLLRH 161
D + L +
Sbjct: 160 D--LAEILQKL 168
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 79.4 bits (197), Expect = 1e-18
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
++ GA NV S + AA G+ + + +L+++GADVN TG +H+A + H
Sbjct: 55 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
+V L + + D G TPL A +GA+++ +L
Sbjct: 115 A--VV-SFLAAESDLHRRD-ARGLTPLELALQRGAQDLVDILQ 153
Score = 75.1 bits (186), Expect = 5e-17
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 81 RSNKYDEVKKNIE-DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
EV++ + + + + +AL + G I LL GA N + +G
Sbjct: 11 ARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGT 69
Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ +H A R D ++ L+ HGA NV D TG P+ A
Sbjct: 70 SPVHDAARTGFLD--TLKVLVEHGADVNVPD-GTGALPIHLA 108
Score = 71.3 bits (176), Expect = 1e-15
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 104 RCGSALIYAAWKG-YEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG 162
R G L AA +G +E+ LL + + G TAL + I +LL+ G
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTA--IALELLKQG 58
Query: 163 AYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
A NV D +G +P+ A G + VL+
Sbjct: 59 ASPNVQD-TSGTSPVHDAARTGFLDTLKVLV 88
Score = 29.7 bits (68), Expect = 0.48
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLD 126
+ ++ R + L A +G +++VD+L
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 81.1 bits (201), Expect = 1e-18
Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 11/171 (6%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKA---AARIAHSALELEERKAINDLLRL 72
+ A+ +P+ EL I + L + +
Sbjct: 15 KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR--TGLIPSNYVAEQAES 72
Query: 73 NLDFLKN-VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN-GAD 130
+ L + +++ +++ +N + +AL +A G+++IV++L +
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE 132
Query: 131 VNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+N ++ G TALH A + D IV+ LL GA ++ + K A
Sbjct: 133 LNQQNKLGDTALHAAAWKGYAD--IVQLLLAKGARTDLRN-IEKKLAFDMA 180
Score = 75.7 bits (187), Expect = 1e-16
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 93 EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 152
+ +N ++ +AL AAWKGY +IV LLL GA + ++ A MA
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN-AACA 186
Query: 153 SIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGA 184
S+++K A + + + +
Sbjct: 187 SLLKKKQGTDAVRTLSN-AEDYLDDEDSDLEHH 218
Score = 51.5 bits (124), Expect = 5e-08
Identities = 6/56 (10%), Positives = 15/56 (26%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
+ GA ++ + A A ++ A +A + +
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215
Score = 34.9 bits (81), Expect = 0.016
Identities = 4/43 (9%), Positives = 8/43 (18%), Gaps = 2/43 (4%)
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G + A + +L + T
Sbjct: 12 GQVKVFRALYTFEPR-TPDELYIEEGDIIYIT-DMSDTNWWKG 52
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 79.0 bits (196), Expect = 2e-18
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
R+ + DEV+ + +GA S L AA G+ ++LL G + ++
Sbjct: 10 ARAGQDDEVRILMANGAPFTTDWLGT-SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR 68
Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
T LHMA H + IV LL+HGA N D T L A +EV +L+
Sbjct: 69 TPLHMAASEGHAN--IVEVLLKHGADVNAKD-MLKMTALHWATEHNHQEVVELLI 120
Score = 78.2 bits (194), Expect = 4e-18
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 33/168 (19%)
Query: 15 KPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKN--KAAARIAHSALELEERKAINDLLRL 72
K + A + G V+ L +GA + + AA+ H + ++L
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGH--------FSTTEVL-- 53
Query: 73 NLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
+ G + ++ + L AA +G+ IV++LL +GADVN
Sbjct: 54 -------------------LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN 94
Query: 133 FKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
K TALH A + + +V L+++GA + K KT +
Sbjct: 95 AKDMLKMTALHWATEHNHQE-VVELLIKYGADVHTQS-KFCKTAFDIS 140
Score = 59.3 bits (145), Expect = 3e-11
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
++ GA +N +AL +A ++E+V+LL+ GADV+ +S TA ++ ++
Sbjct: 87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE 146
Query: 152 DSIVRKLLR 160
D + ++L+
Sbjct: 147 D-LA-EILQ 153
Score = 35.1 bits (82), Expect = 0.009
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
L A R DD VR L+ +GA G +PL A
Sbjct: 2 LGKKLLEAARAGQDD-EVRILMANGA--PFTTDWLGTSPLHLA 41
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 81.0 bits (201), Expect = 3e-18
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
V++ D V++ +E GA +N E G + L A E+IV+LLL +GAD + G
Sbjct: 13 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 72
Query: 139 FTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
T +A +++ L GA N D G T + A
Sbjct: 73 ATPFLLAAIAGSVK--LLKLFLSKGADVNECD-FYGFTAFMEA 112
Score = 80.6 bits (200), Expect = 4e-18
Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 40/193 (20%)
Query: 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLL 70
ED+ + A+Q D +V++L GA ++ + + H+A
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVN----FQEEEGGWTPLHNA------------- 46
Query: 71 RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
V+ ++ D V+ + GA + + + + AA G +++ L L GAD
Sbjct: 47 ---------VQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 131 VNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVD---------GKTGKTPLLHA 180
VN GFTA A + ++ L + GA N+ K G T L+ A
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVK--ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 181 -GKGAREVNTVLL 192
KG EV +LL
Sbjct: 156 AEKGHVEVLKILL 168
Score = 75.2 bits (186), Expect = 4e-16
Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 35/176 (19%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAIND 68
P +A G +++K + GA +++ + AA
Sbjct: 75 PFLLAAIAGSVKLLKLFLSKGADVNE----CDFYGFTAFMEAAVYGK--------VKALK 122
Query: 69 LLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN- 127
L N+R ++ ++ + GA +AL+ AA KG+ E++ +LLD
Sbjct: 123 FL-YKRGANVNLRRKTKEDQERLRKGGA----------TALMDAAEKGHVEVLKILLDEM 171
Query: 128 GADVNFKSATGFTALHMACRFHDDDS---IVRKLLRHGAYYNVVDGKTGKTPLLHA 180
GADVN G AL A DD I LL HGA NV + GKTPL+ A
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG-ERGKTPLILA 226
Score = 71.3 bits (176), Expect = 9e-15
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 93 EDGACINVSSERCGSALIYAAWKG----YEEIVDLLLDNGADVNFKSATGFTALHMACRF 148
E GA +N +ALI+A E I LLLD+GADVN + G T L +A
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229
Query: 149 HDDDSIVRKLL-RHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
+V++LL + N D GKT LL A +++ +L
Sbjct: 230 KHLG-LVQRLLEQEHIEINDTD-SDGKTALLLAVELKLKKIAELLC 273
Score = 66.0 bits (162), Expect = 8e-13
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHD 150
++ GA +NV ER + LI A K + +V LL+ ++N + G TAL +A
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 265
Query: 151 DDSIVRKLLRHGAYYNVVD 169
I L + GA + D
Sbjct: 266 KK-IAELLCKRGASTDCGD 283
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 77.8 bits (193), Expect = 3e-18
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
R+ + DEV+ + +GA +N E + L A G+ EIV++LL NGADVN A GF
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF 81
Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
T LH+A H + I LL+HGA N D K GKT +
Sbjct: 82 TPLHLAAFIGHLE--IAEVLLKHGADVNAQD-KFGKTAFDIS 120
Score = 73.6 bits (182), Expect = 1e-16
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 91 NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
+ G+ + L+ AA G ++ V +L+ NGADVN K G T L++A
Sbjct: 7 HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ IV LL++GA N VD G TPL A
Sbjct: 60 LE-IVEVLLKNGADVNAVD-AIGFTPLHLA 87
Score = 61.6 bits (151), Expect = 2e-12
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+++GA +N + L AA+ G+ EI ++LL +GADVN + G TA ++ ++
Sbjct: 67 LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
Query: 152 DSIVRKLLRH 161
D + L +
Sbjct: 127 D-LAEILQKL 135
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 77.0 bits (191), Expect = 4e-18
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+ GA +N S+ + L AA G+ EIV LLL GADVN +S G T H+A + H
Sbjct: 29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHH 88
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPL 177
+ IV+ L GA N
Sbjct: 89 E--IVKLLDAKGADVNARS-WGSSHHH 112
Score = 73.2 bits (181), Expect = 8e-17
Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 166
L AA G+ E V LL GADVN +S G T LH+A + H + IV+ LL GA N
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE--IVKLLLAKGADVN 69
Query: 167 VVDGKTGKTPLLHA 180
K G TP A
Sbjct: 70 ARS-KDGNTPEHLA 82
Score = 58.2 bits (142), Expect = 4e-11
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 26/125 (20%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
A + G + VK+L + GA ++ ++K H A A N
Sbjct: 15 NAAKNGHAEEVKKLLSKGADVNA----RSKDGNTPLHLA-------AKN----------- 52
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
+ VK + GA +N S+ + A G+ EIV LL GADVN +S
Sbjct: 53 ----GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108
Query: 139 FTALH 143
H
Sbjct: 109 SHHHH 113
Score = 40.1 bits (95), Expect = 8e-05
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 128 GADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G K G T LH A + H + V+KLL GA N K G TPL A
Sbjct: 1 GHMWGSKD--GNTPLHNAAKNGHAE--EVKKLLSKGADVNARS-KDGNTPLHLA 49
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 80.0 bits (198), Expect = 5e-18
Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 36/180 (20%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
I + G A + + + A
Sbjct: 18 EYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTA--------------------- 52
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
R + + +E ++ E +AL++ A G ++ V LL + GAD++ +
Sbjct: 53 ----ARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 107
Query: 136 A-TGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
G TALHMA + + +V L+ GA V D + G T L A +
Sbjct: 108 MRGGLTALHMAAGYVRPE--VVEALVELGADIEVED-ERGLTALELAREILKTTPKGNPM 164
Score = 74.2 bits (183), Expect = 6e-16
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 92 IEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
E GA ++ R G AL AA E+V+ L++ GAD+ + G TAL +A
Sbjct: 97 AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 156
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
++ G + +L EV+ ++
Sbjct: 157 TT-PKGNPMQFGRRIGLEK----VINVLEGQVFEYAEVDEIVE 194
Score = 56.8 bits (138), Expect = 7e-10
Identities = 19/116 (16%), Positives = 29/116 (25%), Gaps = 29/116 (25%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT-------------- 137
+E GA I V ER +AL A + G + +
Sbjct: 131 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVD 190
Query: 138 --------GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKG 183
G ++ R+ D H A D + G L +
Sbjct: 191 EIVEKRGKGKDVEYLV-RWKDGGDCEWVKGVHVAEDVAKDYEDG----LEYAVAES 241
Score = 44.9 bits (107), Expect = 8e-06
Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 6/127 (4%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
+A P++V+ L GA I+ +++ A E+ + + ++
Sbjct: 117 MAAGYVRPEVVEALVELGADIEV----EDERGLTALELAREILKTTPKGNPMQFGRRIGL 172
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
N + + I + WK + + + A+ K
Sbjct: 173 EKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK--DY 230
Query: 139 FTALHMA 145
L A
Sbjct: 231 EDGLEYA 237
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 79.0 bits (196), Expect = 9e-18
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+ G+ IN+ L +AA+ G +I ++LL D++ + G + LH+A R
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY 190
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
D V L + + + K G+TPL A
Sbjct: 191 D--CVVLFLSRDSDVTLKN-KEGETPLQCA 217
Score = 74.8 bits (185), Expect = 4e-16
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 17/105 (16%)
Query: 98 INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVR 156
+ + S L AA G+ +I +L+ GA+++ S T L A H + V+
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLE--AVK 61
Query: 157 KLLRHGAYYNVVDGKTGKTPLLHA-------------GKGAREVN 188
L++ GA + D G T L A G +VN
Sbjct: 62 YLIKAGALVDPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105
Score = 74.4 bits (184), Expect = 4e-16
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 31/167 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ A + + VK L GA +D K+ + H A
Sbjct: 47 PLMEAAENNHLEAVKYLIKAGALVDP----KDAEGSTCLHLA------------------ 84
Query: 76 FLKNVRSNKYDEVKKNIEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
+ Y+ V+ + +G +N + + +I+A + ++V LLL G+D+N +
Sbjct: 85 ----AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140
Query: 135 SATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
LH A D I LL + V+ G +PL A
Sbjct: 141 DNEENICLHWAAFSGCVD--IAEILLAAKCDLHAVN-IHGDSPLHIA 184
Score = 73.6 bits (182), Expect = 8e-16
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
++ GA I+ SE + L+ AA + E V L+ GA V+ K A G T LH+A + H
Sbjct: 31 VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHY 90
Query: 151 DDSIVRKLLRHGAYY-NVVDGKTGKTPLLHA 180
+ +V+ LL +G N D G TP++ A
Sbjct: 91 E--VVQYLLSNGQMDVNCQD-DGGWTPMIWA 118
Score = 67.1 bits (165), Expect = 2e-13
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 27/148 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ A + +VK L + G+ I+ ++ H A
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINI----RDNEENICLHWA------------------ 151
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
S D + + ++ + S L AA + + V L L +DV K+
Sbjct: 152 ----AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGA 163
G T L A + ++ +
Sbjct: 208 KEGETPLQCASL-NSQVWSALQMSKALQ 234
Score = 44.7 bits (107), Expect = 8e-06
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 129 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ + + LH A D I L++ GA + + +TPL+ A
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVD-ICHMLVQAGANIDTCS-EDQRTPLMEA 51
Score = 37.0 bits (87), Expect = 0.004
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
R N+YD V + + + + ++ + L A+ + D
Sbjct: 185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 78.4 bits (194), Expect = 1e-17
Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 33/181 (18%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
+ + + E HG + A +
Sbjct: 8 SLPPGKRTNLRKTGSERIAHGM--RVKFNPLPLALLLDS--------------------- 44
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
++D V++ I + ++ ++ +AL A G+ EIV L+ G +VN
Sbjct: 45 ----SLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LH--AGKGAREVNTVL 191
+ G+T LH A + + + L+ GA + +T +G + + L
Sbjct: 101 SDGWTPLHCAASCNNVQ--VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Query: 192 L 192
Sbjct: 159 Y 159
Score = 59.9 bits (146), Expect = 5e-11
Identities = 24/172 (13%), Positives = 45/172 (26%), Gaps = 34/172 (19%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
A+ G +IVK L G ++ + H A
Sbjct: 76 NAVCAGHTEIVKFLVQFGVNVNA----ADSDGWTPLHCA--------------------- 110
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCG---SALIYAAWKGYEEIVDLLLDNGADVNFKS 135
N K +E GA + + + +GY + L + +
Sbjct: 111 -ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD-GKTGKTPLLHAGKGARE 186
AL +DD+ ++ G ++ + A +E
Sbjct: 170 KGVIYALWDYEPQNDDE----LPMKEGDCMTIIHREDEDEIEWWWARLNDKE 217
Score = 37.2 bits (87), Expect = 0.003
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 5/44 (11%)
Query: 138 GFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G +L R + + HG V LL +
Sbjct: 5 GQVSLPPGKRTNLRK--TGSERIAHGM--RVKFNPLPLALLLDS 44
Score = 31.8 bits (73), Expect = 0.16
Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 45/166 (27%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ A + Q+ K L GA + YS + AA E
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE---------------- 149
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ + + ++ AL + +E L + G +
Sbjct: 150 -------GYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCM---- 195
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAG 181
T +H +D+ + K G P G
Sbjct: 196 ----TIIH-----REDEDEIEWWWARLN------DKEGYVPRNLLG 226
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 74.7 bits (185), Expect = 2e-17
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 166
L AA G+ E+V LLL+ GADVN K G T LH+A R H + +V+ LL GA N
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE--VVKLLLEAGADVN 62
Query: 167 VVDGKTGKTPLLHA 180
D K G+TPL A
Sbjct: 63 AKD-KNGRTPLHLA 75
Score = 73.2 bits (181), Expect = 5e-17
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+E GA +N + + L AA G+ E+V LLL+ GADVN K G T LH+A R H
Sbjct: 22 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81
Query: 151 DDSIVRKLLRHGAY 164
+ +V+ LL GAY
Sbjct: 82 E--VVKLLLEAGAY 93
Score = 39.6 bits (94), Expect = 9e-05
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 138 GFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G T LH+A R H + +V+ LL GA N D K G+TPL A
Sbjct: 2 GRTPLHLAARNGHLE--VVKLLLEAGADVNAKD-KNGRTPLHLA 42
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 75.9 bits (188), Expect = 2e-17
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 102 SERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 161
+E G+ L AA +G E + LL N +VN ++ G TAL + + + I R+LL
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPE--IARRLLLR 59
Query: 162 GAYYNVVDGKTGKTPLLHA 180
GA ++ D +TG + A
Sbjct: 60 GANPDLKD-RTGFAVIHDA 77
Score = 74.0 bits (183), Expect = 2e-16
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+ GA ++ + + AA G+ + + LL+ ADVN + G LH+A + H
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 151 DDSIVRKLLRHGAYY-NVVDGKTGKTPLLHA 180
+V L++H A + G T A
Sbjct: 117 R--VVEFLVKHTASNVGHRN-HKGDTACDLA 144
Score = 73.6 bits (182), Expect = 2e-16
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
+++ +++ +N + +AL G EI LL GA+ + K TGF
Sbjct: 13 AARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGF 71
Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+H A R D ++ LL A N+ D G PL A
Sbjct: 72 AVIHDAARAGFLD--TLQTLLEFQADVNIED-NEGNLPLHLA 110
Score = 61.6 bits (151), Expect = 5e-12
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA-DVNFKSATGFTALHMACRFHD 150
+E A +N+ L AA +G+ +V+ L+ + A +V ++ G TA +A +
Sbjct: 90 LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149
Query: 151 DDSIVRKLLRHGA 163
++ +V + +GA
Sbjct: 150 NE-VVSLMQANGA 161
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 78.7 bits (195), Expect = 3e-17
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+ GA N+ L AA +IV +LL +G D + G TAL+ A +
Sbjct: 51 LNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNM 108
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
V+ ++ KT HA
Sbjct: 109 Q--TVKLFVKKNWRLMFYGKTGWKTSFYHA 136
Score = 72.9 bits (180), Expect = 3e-15
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 7/105 (6%)
Query: 77 LKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA 136
L + + K ++K + + SA YA +V LL+ GA N
Sbjct: 4 LSRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL-- 60
Query: 137 TGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
LH A IV+ LL G + D G T L +A
Sbjct: 61 ENEFPLHQAATLEDTK--IVKILLFSGLDDSQFD-DKGNTALYYA 102
Score = 64.1 bits (157), Expect = 3e-12
Identities = 25/191 (13%), Positives = 48/191 (25%), Gaps = 55/191 (28%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFL 77
A+ G+ Q VK ++ K + + + A
Sbjct: 101 YAVDSGNMQTVKLFVKKNWRLMF----YGKTGWKTSFYHA-------------------- 136
Query: 78 KNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
V N V + + S + G+ +++ LLLD N ++
Sbjct: 137 --VMLNDVSIVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL 193
Query: 138 GFT-ALHMACR-------------------------FHDDDSIVRKLLRHGAYYNVVDGK 171
F + +A DD I + ++ Y
Sbjct: 194 LFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDS-Y 252
Query: 172 TGKTPLLHAGK 182
T ++ K
Sbjct: 253 TKDLDIVKNNK 263
Score = 50.6 bits (122), Expect = 1e-07
Identities = 13/134 (9%), Positives = 35/134 (26%), Gaps = 32/134 (23%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
I I I+ G ++ L ++ + ++A
Sbjct: 164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLA--------------------- 202
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
+ + + ++ + I SA + EI ++++ + S
Sbjct: 203 ----IDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDS 251
Query: 136 ATGFTALHMACRFH 149
T + +
Sbjct: 252 YTKDLDIVKNNKLD 265
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 75.9 bits (188), Expect = 3e-17
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 80 VRSNKYDEVKKNIEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
++ + VKK + R + L +AA +V+ LL +GADV+ K G
Sbjct: 16 AKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG 75
Query: 139 FTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
LH AC + H + + L++HGA NV D TPL A KG E+ +LL
Sbjct: 76 LVPLHNACSYGHYE--VAELLVKHGAVVNVAD-LWKFTPLHEAAAKGKYEICKLLL 128
Score = 65.9 bits (162), Expect = 1e-13
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
++ GA +NV+ + L AA KG EI LLL +GAD K+ G T L + D
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTD 154
Query: 152 DSIVRKLLRHGA 163
I L A
Sbjct: 155 --IQDLLRGDAA 164
Score = 62.0 bits (152), Expect = 3e-12
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLD-NGADVNFKSATGFTALHMACRF-HDDD 152
GA N ++ L+ AA G E V L + T LH A +
Sbjct: 1 GAMGNSEAD---RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS- 56
Query: 153 SIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+V LL+HGA + D K G PL +A
Sbjct: 57 -VVEYLLQHGADVHAKD-KGGLVPLHNA 82
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 76.3 bits (189), Expect = 4e-17
Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 32/159 (20%)
Query: 36 GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKN-------------VRS 82
G+ +DK K + + NLDFL+N
Sbjct: 1 GSHMDKNGEIVEKIKDEKSINQ---------------NLDFLRNYRDSYNRTPLMVACML 45
Query: 83 NKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTAL 142
+ + K +E+ + +ALI+A I + LL G++VN K +G T L
Sbjct: 46 GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105
Query: 143 HMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ F + + + LL HGA N + G+TPL+ A
Sbjct: 106 MWSIIFGYSE--MSYFLLEHGANVNDRN-LEGETPLIVA 141
Score = 75.9 bits (188), Expect = 6e-17
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+ G+ +N + L+++ GY E+ LL++GA+VN ++ G T L +A ++
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ IV+KLL GA + D TG T A
Sbjct: 148 E-IVKKLLELGADISARD-LTGLTAEASA 174
Score = 60.1 bits (147), Expect = 3e-11
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
+E GA +N + + LI A+ G EIV LL+ GAD++ + TG TA A F
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180
Query: 152 DSIVRKLLRHGA 163
+ +++
Sbjct: 181 E-VIKIFTEVRR 191
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 76.3 bits (189), Expect = 4e-17
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 92 IEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFH 149
++ +N + G+ALI AA KG+ + V LLL++G D++F++ G+TAL A
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151
Query: 150 DDDS----IVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ + IV+ L+ +GA ++ D +G+T + +A
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKD-NSGRTAMDYA 185
Score = 76.3 bits (189), Expect = 4e-17
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+ ++ + L A EI L+D GAD+N +++ + A
Sbjct: 26 QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRT 85
Query: 151 DDSIVRKLLRHGAY-YNVVDGKTGKTPLLHA 180
+ I+ +L+H N + + G L+ A
Sbjct: 86 E--ILAYMLKHATPDLNKHN-RYGGNALIPA 113
Score = 71.3 bits (176), Expect = 3e-15
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 17/96 (17%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY 165
+ L A + +++ ++L D V+ G T L++A + I + L+ GA
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIE--IAKALIDRGADI 65
Query: 166 NVVDGKTGKTPLLHAG-------------KGAREVN 188
N+ + +P L+AG ++N
Sbjct: 66 NLQN-SISDSPYLYAGAQGRTEILAYMLKHATPDLN 100
Score = 54.0 bits (131), Expect = 5e-09
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 108 ALIYAAW-----KGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 161
ALI A + Y++IV LL++NGAD + K +G TA+ A + + I + L ++
Sbjct: 143 ALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE-ISKILAQY 200
Score = 36.7 bits (86), Expect = 0.003
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
K+ L A + + L + VD G TPL A
Sbjct: 2 KTYEVGALLEAANQRDTKK-VKEILQDTTYQVDEVD-TEGNTPLNIA 46
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 77.5 bits (192), Expect = 5e-17
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
I A +N + SAL +AA + +LL NGA+ + ++ T L +A R
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 203
Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ + LL H A ++ D + P A
Sbjct: 204 E-TAKVLLDHFANRDITD-HMDRLPRDIA 230
Score = 75.6 bits (187), Expect = 2e-16
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 92 IEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
I + A ++ + LI AA E +++ L+++ ADVN G +ALH A ++
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
D LL++GA ++ + +TPL A +G+ E VLL
Sbjct: 170 VD-AAVVLLKNGANKDMQN-NREETPLFLAAREGSYETAKVLL 210
Score = 74.8 bits (185), Expect = 3e-16
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 92 IEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
I GA ++ ++R G +AL AA + LL+ AD N + G T LH A D
Sbjct: 43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-AD 101
Query: 151 DDSIVRKLLRHGAYY-NVVDGKTGKTPLLHA 180
+ + L+R+ A + G TPL+ A
Sbjct: 102 AQGVFQILIRNRATDLDARM-HDGTTPLILA 131
Score = 74.4 bits (184), Expect = 6e-16
Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 28/166 (16%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
+ P ++ + GA + + + A +A
Sbjct: 26 TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA--------------------- 64
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA-DVNFK 134
R ++ D K+ +E A N+ + L A + + +L+ N A D++ +
Sbjct: 65 ----ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G T L +A R + ++ L+ A N VD GK+ L A
Sbjct: 121 MHDGTTPLILAARLAVEG-MLEDLINSHADVNAVD-DLGKSALHWA 164
Score = 62.9 bits (154), Expect = 6e-12
Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 29/146 (19%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFL 77
+A ++ ++++L N A ++ + + A H A
Sbjct: 130 LAARLAVEGMLEDLINSHADVNA----VDDLG-KSALHWA-------------------- 164
Query: 78 KNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
N D +++GA ++ + R + L AA +G E +LLD+ A+ +
Sbjct: 165 --AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 222
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGA 163
+A D IVR L
Sbjct: 223 DRLPRDIAQERMHHD-IVRLLDLEHH 247
Score = 60.9 bits (149), Expect = 3e-11
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADV-NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
+ ++ + GA + N TG TALH+A R+ D ++LL A
Sbjct: 25 ETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD-AAKRLLEASADA 83
Query: 166 NVVDGKTGKTPLLHA-GKGAREVNTVLL 192
N+ D G+TPL A A+ V +L+
Sbjct: 84 NIQD-NMGRTPLHAAVSADAQGVFQILI 110
Score = 39.8 bits (94), Expect = 4e-04
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 130 DVNFKSATGFTALHMACRF------------HDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
DVN + GFT L +A D +++ + GA + +TG+T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 178 LHA 180
A
Sbjct: 62 HLA 64
Score = 39.4 bits (93), Expect = 6e-04
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
R Y+ K ++ A +++ A + + +IV LL +
Sbjct: 198 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 76.7 bits (190), Expect = 5e-17
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 92 IEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
I + A ++ + LI AA E +++ L+++ ADVN G +ALH A ++
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137
Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
D LL++GA ++ + +TPL A
Sbjct: 138 VD-AAVVLLKNGANKDMQN-NREETPLFLA 165
Score = 75.9 bits (188), Expect = 1e-16
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
I A +N + SAL +AA + +LL NGA+ + ++ T L +A R
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 171
Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ + LL H A ++ D + P A
Sbjct: 172 E-TAKVLLDHFANRDITD-HMDRLPRDIA 198
Score = 74.8 bits (185), Expect = 2e-16
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 92 IEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
I GA ++ ++R G AL AA + LL+ AD N + G T LH A D
Sbjct: 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-AD 69
Query: 151 DDSIVRKLLRHGAYY-NVVDGKTGKTPLLHA 180
+ + L+R+ A + G TPL+ A
Sbjct: 70 AQGVFQILIRNRATDLDARM-HDGTTPLILA 99
Score = 67.4 bits (166), Expect = 1e-13
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 27/151 (17%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ +A ++ ++++L N A ++ + H A
Sbjct: 95 PLILAARLAVEGMLEDLINSHADVNA----VDDLGKSALHWA------------------ 132
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
N D +++GA ++ + R + L AA +G E +LLD+ A+ +
Sbjct: 133 ----AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+A D IVR L + +
Sbjct: 189 HMDRLPRDIAQERMHHD-IVRLLDEYNLVRS 218
Score = 56.6 bits (138), Expect = 7e-10
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 116 GYEEIVDLLLDNGADV-NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 174
++ + GA + N TG TALH+A R+ D ++LL A N+ D G+
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD-AAKRLLEASADANIQD-NMGR 59
Query: 175 TPLLHA-GKGAREVNTVLL 192
TPL A A+ V +L+
Sbjct: 60 TPLHAAVSADAQGVFQILI 78
Score = 43.6 bits (104), Expect = 2e-05
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
R Y+ K ++ A +++ A + + +IV LL + +
Sbjct: 166 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS------- 218
Query: 140 TALH 143
LH
Sbjct: 219 PQLH 222
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 73.8 bits (182), Expect = 6e-17
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
+ G+ + G L+ AA G ++ V +L+ NGADV K G T LH+A R H
Sbjct: 14 VPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHL 70
Query: 151 DDSIVRKLLRHGAYYNVVDG-KTGKTPLLHAGKGARE 186
+ +V+ LL GA +V K GKT + E
Sbjct: 71 E--VVKLLLEAGA--DVXAQDKFGKTAFDISIDNGNE 103
Score = 66.8 bits (164), Expect = 2e-14
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 112 AAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDG 170
+ + L+ G+ + + L A R DD VR L+ +GA D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDD--EVRILMANGADVAAKD- 54
Query: 171 KTGKTPLLHA 180
K G TPL A
Sbjct: 55 KNGSTPLHLA 64
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 74.8 bits (185), Expect = 3e-16
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
+N + + + L A K + E+ L++NGA V K LH A +
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK-L 155
Query: 155 VRKLLRHGAYYNVVDGKT--GKTPLLHA 180
+ L G + V+ + G TPL HA
Sbjct: 156 IELLCGLGK--SAVNWQDKQGWTPLFHA 181
Score = 71.7 bits (177), Expect = 4e-15
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 10/108 (9%)
Query: 80 VRSNKYDEVKKN-IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT- 137
N++ +V++ + + + L ++ EI LL +VN
Sbjct: 10 CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD 69
Query: 138 --GFTALHMACRF-HDDDSIVRKLLRH--GAYYNVVDGKTGKTPLLHA 180
G+T H+AC + + +V+ L N + G T L A
Sbjct: 70 DSGWTPFHIACSVGNLE--VVKSLYDRPLKPDLNKIT-NQGVTCLHLA 114
Score = 70.9 bits (175), Expect = 7e-15
Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 30/165 (18%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
IA +G+ ++VK L + + D + H A
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC--LHLA--------------------- 114
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSAT 137
V ++ + IE+GA + + + L AA G ++++LL G + VN++
Sbjct: 115 -VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
Query: 138 GFTALHMACRF-HDDDSIVRKLL-RHGAYYNVVDGKTGKTPLLHA 180
G+T L A H D L+ ++GA Y++VD G A
Sbjct: 174 GWTPLFHALAEGHGD--AAVLLVEKYGAEYDLVD-NKGAKAEDVA 215
Score = 68.6 bits (169), Expect = 4e-14
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 108 ALIYAAWKG-YEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
L A + + ++ +LL + + K G LH + F + I LL N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE-ITSFLLSKMENVN 63
Query: 167 VVDGKT--GKTPLLHA 180
+ D G TP A
Sbjct: 64 LDDYPDDSGWTPFHIA 79
Score = 52.4 bits (127), Expect = 2e-08
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 108 ALIYAAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 161
L +A +G+ + LL++ GA+ + G A +A + + + L +
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN----EQVKKFFLNN 227
Score = 39.0 bits (92), Expect = 7e-04
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
LH AC ++ + L + D + G+ PL +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWS 43
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 76.4 bits (189), Expect = 3e-16
Identities = 20/167 (11%), Positives = 41/167 (24%), Gaps = 31/167 (18%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAINDLLR 71
AI I + G ++ ++ + R A + L
Sbjct: 217 WAILINWEDVAMRFVEMGIDVNM----EDNEHTVPLYLSVRAAM--------VLLTKEL- 263
Query: 72 LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
L+ + +G + + AA +E++ LL + +V
Sbjct: 264 -----LQKTDVFLIQACPYH--NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316
Query: 132 NFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
TG + + R L A ++
Sbjct: 317 VRSLNTGAGGAVKRKKKAAPA--VKRMKLAPSAPVRTRS-RSRARSS 360
Score = 76.1 bits (188), Expect = 5e-16
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD-----NGADVNFKSATGFTALHMAC 146
++ GA + + L+ A E +DL++D + +++ + G + LH A
Sbjct: 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI 219
Query: 147 RF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+D + + + G N+ D PL +
Sbjct: 220 LINWED--VAMRFVEMGIDVNMED-NEHTVPLYLS 251
Score = 74.5 bits (184), Expect = 2e-15
Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
++ ++++ S L +A +E++ ++ G DVN + L+++ R +
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVL-L 259
Query: 155 VRKLLRHGAYYNVVD--GKTGKTPLLHAGKG 183
++LL+ + + G T L
Sbjct: 260 TKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290
Score = 74.1 bits (183), Expect = 2e-15
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 98 INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVR 156
S + + AA KG + V L++ G ++ G TALH+AC+F D +
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD--TAK 70
Query: 157 KLLRHGAYYNVVDGKTGKTPLLHA 180
L G V G+ P+ A
Sbjct: 71 YLASVGE---VHSLWHGQKPIHLA 91
Score = 72.6 bits (179), Expect = 6e-15
Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 13/111 (11%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
R + DEV++ IE G + + +AL A G + L G + G
Sbjct: 28 ARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQ 85
Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVN 188
+H+A D +V L+ + G+ P REVN
Sbjct: 86 KPIHLAVMANKTD--LVVALVEGAK-------ERGQMPESLLNECDEREVN 127
Score = 69.9 bits (172), Expect = 6e-14
Identities = 30/187 (16%), Positives = 54/187 (28%), Gaps = 51/187 (27%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
I +A + G V+ L G +N+ H A
Sbjct: 23 KIHVAARKGQTDEVRRLIETGVSPTI----QNRFGCTALHLA------------------ 60
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD----- 130
+ D K G ++ + + A ++V L++ +
Sbjct: 61 ----CKFGCVDTAKYLASVGEVHSLWHGQ--KPIHLAVMANKTDLVVALVEGAKERGQMP 114
Query: 131 ----------------VNFKSATGFTALHMACRFHDDDS-IVRKLLRHGAYYNVVDGKTG 173
+ K G TALH + +++ L++ GA D K
Sbjct: 115 ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD-KAD 173
Query: 174 KTPLLHA 180
+TPL+ A
Sbjct: 174 ETPLMRA 180
Score = 63.3 bits (155), Expect = 8e-12
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 98 INVSSERCGSALIYAAWKG--YEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSI 154
+V + +AL + G Y E++ +L+ GA K T L A F + +
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE--A 188
Query: 155 VRKLL-----RHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
+ ++ + + + K G + L A +V +
Sbjct: 189 LDLMMDTVPSKSSLRLDYAN-KQGNSHLHWAILINWEDVAMRFV 231
Score = 44.9 bits (107), Expect = 1e-05
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 123 LLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ + +H+A R D VR+L+ G + + + G T L A
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTD--EVRRLIETGVSPTIQN-RFGCTALHLA 60
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 74.1 bits (183), Expect = 5e-16
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Query: 78 KNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
++ + +++ D A +N + + L A EI + LL G D +
Sbjct: 18 HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR 77
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG-----KTGKTPLLHA 180
G T LH+AC V L + ++ G T L A
Sbjct: 78 GNTPLHLACEQGCLA-SVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Score = 74.1 bits (183), Expect = 5e-16
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 91 NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT-GFTALHMACRFH 149
+ + ++ + L A+ GY IV+LL+ GADVN + G TALH+A
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162
Query: 150 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 192
+ D +V LL+ GA N V G +P G+ + + L
Sbjct: 163 NPD-LVSLLLKCGADVNRVT-YQGYSP-YQLTWGRPSTRIQQQLG 204
Score = 71.4 bits (176), Expect = 5e-15
Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 27/162 (16%)
Query: 19 IAIQIGDPQIVKELQNHGA--QIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF 76
+A + G V L + + + N H A
Sbjct: 84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA------------------- 124
Query: 77 LKNVRSNKYDEVKKNIEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKS 135
V+ + GA +N G +AL A ++V LLL GADVN +
Sbjct: 125 ---SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 181
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
G++ + I ++L + + +
Sbjct: 182 YQGYSPYQLTWGRPSTR-IQQQLGQLTLENLQML-PESEDEE 221
Score = 64.9 bits (159), Expect = 1e-12
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 107 SALIYAAWKGY----EEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG 162
S L A E++ + + A +NF++ T LH+A + I LL G
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI-TNQPEIAEALLGAG 68
Query: 163 AYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 192
+ D G TP LH +G VL
Sbjct: 69 CDPELRD-FRGNTP-LHLACEQGCLASVGVLT 98
Score = 52.2 bits (126), Expect = 3e-08
Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 27/128 (21%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFL 77
+A G IV+ L + GA ++ + R A H A
Sbjct: 123 LASIHGYLGIVELLVSLGADVNA----QEPCNGRTALHLA-------------------- 158
Query: 78 KNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
V D V ++ GA +N + + S + I L +
Sbjct: 159 --VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 216
Query: 138 GFTALHMA 145
Sbjct: 217 SEDEESYD 224
Score = 36.8 bits (86), Expect = 0.004
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 138 GFTALHMACRFHDDDS---IVRKLLRHGAYYNVVDGKTGKTPLLHA 180
G + LH+A + ++R++ A+ N + +TPL A
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN-NLQQTPLHLA 52
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 74.2 bits (183), Expect = 2e-15
Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 29/170 (17%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNK--AAARIAHSALELEERKAINDLLRLN 73
+ G I + + I +++ A + ++ L ++
Sbjct: 97 KLHTEAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASNSS--------AEKSEDLIVH 147
Query: 74 LDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNF 133
E K+ I GA +N + L+ A +V L+ GAD
Sbjct: 148 -------------EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 194
Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRH---GAYYNVVDGKTGKTPLLHA 180
+ + +ALH A + D ++ +L +D + G T L+
Sbjct: 195 YNKSERSALHQAAA-NRDFGMMVYMLNSTKLKGDIEELD-RNGMTALMIV 242
Score = 70.8 bits (174), Expect = 3e-14
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 92 IEDGACINVSSERCGS--------ALIYAAWKGYEEIVDLLL-DNGADVNFKSATGFTAL 142
+E GA ++ AL YAA IV L+ + G++ + + G T +
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317
Query: 143 HMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+A + + +V L++ GA VD T T A
Sbjct: 318 MLAAQEGRIE--VVMYLIQQGASVEAVD-ATDHTARQLA 353
Score = 69.6 bits (171), Expect = 7e-14
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 5/86 (5%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 167
G + + D N LH I + R N+
Sbjct: 64 PNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYA--ITEPITRESV--NI 119
Query: 168 VDGKTGKTPLLHA-GKGAREVNTVLL 192
+D + +T L + E + L+
Sbjct: 120 IDPRHNRTVLHWIASNSSAEKSEDLI 145
Score = 69.6 bits (171), Expect = 8e-14
Identities = 25/187 (13%), Positives = 49/187 (26%), Gaps = 41/187 (21%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P G+ + + + + H+
Sbjct: 64 PNPQGYGNGNDFLGDFNHTNLQIPTE----PEPESPIKLHTE------------------ 101
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLL--------DN 127
+ Y + + I + L + A E + L+
Sbjct: 102 -----AAGSYAITEPITRESVNIIDPRHNR-TVLHWIASNSSAEKSEDLIVHEAKECIAA 155
Query: 128 GADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAR 185
GADVN T L +A +V L++ GA + + K+ ++ L A
Sbjct: 156 GADVNAMDCDENTPLMLAVLARRRR--LVAYLMKAGADPTIYN-KSERSALHQAAANRDF 212
Query: 186 EVNTVLL 192
+ +L
Sbjct: 213 GMMVYML 219
Score = 65.7 bits (161), Expect = 1e-12
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 93 EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 152
E G+ + E + ++ AA +G E+V L+ GA V AT TA +A + +
Sbjct: 301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN 360
Query: 153 SIVRKLLRHGA 163
IV R
Sbjct: 361 -IVDIFDRCRP 370
Score = 41.1 bits (97), Expect = 2e-04
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
+ + + V I+ GA + +A A + IVD+ +
Sbjct: 321 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 72.6 bits (178), Expect = 2e-15
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 9/175 (5%)
Query: 82 SNKYDEVKKN-IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
S K DE+K+ + D + + + +AL +A G+ EIV+ LL G VN K G++
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS 75
Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAG-KGAREVNTVLLYFIHEIF 199
LH+A D IV+ LL GA+ N V+ + G TPL +A K E+ +LL
Sbjct: 76 PLHIAA-SAGXDEIVKALLVKGAHVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 200 KLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETI 249
+ T + L + L+ N L + E
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188
Score = 69.5 bits (170), Expect = 2e-14
Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 10/150 (6%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY 165
A +E+ + +L + + TALH AC H + IV LL+ G
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTE--IVEFLLQLGVPV 66
Query: 166 NVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKSL 219
N D G +PL A G E+ LL + + N T + +R + L
Sbjct: 67 NDKD-DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 220 ILEGTKEFGPGDYNNFSLLKVTKNDAGETI 249
+ G Y+ ++ + + +
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Score = 61.4 bits (149), Expect = 2e-11
Identities = 30/163 (18%), Positives = 51/163 (31%), Gaps = 18/163 (11%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+ IA G +IVK L GA ++ N+ H A + LL +
Sbjct: 76 PLHIAASAGXDEIVKALLVKGAHVNA----VNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 76 -----------FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124
+ V + A N+ + L A + E L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 125 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 167
+ GA + ++ T L +A ++ K L G ++
Sbjct: 192 VTQGASIYIENKEEKTPLQVAKGGLG---LILKRLAEGEEASM 231
Score = 60.3 bits (146), Expect = 4e-11
Identities = 49/209 (23%), Positives = 75/209 (35%), Gaps = 32/209 (15%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
A G +IV+ L G ++ K+ A H A
Sbjct: 46 WACSAGHTEIVEFLLQLGVPVND----KDDAGWSPLHIA--------------------- 80
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
+ + VK + GA +N ++ + L YAA K EI +LL+ GA+ + K
Sbjct: 81 -ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 139 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLLYFIHE 197
TA+H A + +V LL + A N+ D G TPL A E L+
Sbjct: 140 ATAMHRAAAKGNLK-MVHILLFYKASTNIQD-TEGNTPLHLACDEERVEEAKFLVTQGAS 197
Query: 198 IFKLMANNDTTIL---DRLDEMKSLILEG 223
I+ T + L + + EG
Sbjct: 198 IYIENKEEKTPLQVAKGGLGLILKRLAEG 226
Score = 42.5 bits (100), Expect = 6e-05
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 17/132 (12%)
Query: 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
P+ A +I L GA D K+ A H A K ++ LL
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPDA----KDHYDATAMHRAAAKGNLKMVHILLF 160
Query: 72 LNLD-----------FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEI 120
+ +E K + GA I + ++ + L A G +
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGL 218
Query: 121 VDLLLDNGADVN 132
+ L G + +
Sbjct: 219 ILKRLAEGEEAS 230
Score = 38.7 bits (90), Expect = 0.001
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
++A D+ + ++L + D + +T L A
Sbjct: 7 NIMICNLAYSGKLDE-LKERILADKSLATRTD-QDSRTALHWA 47
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 72.0 bits (176), Expect = 8e-15
Identities = 31/226 (13%), Positives = 64/226 (28%), Gaps = 19/226 (8%)
Query: 45 SKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSER 104
+ + S+ E + N + S + +N+ +
Sbjct: 75 IQEMPTSLNNDSSNRNSEGGSSNQQQQHVS-----FDSLLQEVNDAFPNTQLNLNIPVDE 129
Query: 105 CG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH--DDDSIVRKLLRH 161
G + L + E+V L+ +G++ + G + L A + D LL +
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 189
Query: 162 GAYY-NVVDGKTGKTPLLHAGKGAREVNT--VLLYFIHEIFKLMANNDTTILDRLDEMKS 218
+ D +T L H + Y++ + + + K
Sbjct: 190 LYPCLILED-SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248
Query: 219 LILEGTKEFGPGDYNNFSLLKV-------TKNDAGETILDIAKKRG 257
LK ++ G+T L+IA + G
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294
Score = 55.4 bits (133), Expect = 3e-09
Identities = 34/192 (17%), Positives = 56/192 (29%), Gaps = 41/192 (21%)
Query: 19 IAIQIGDPQIVKELQNHGAQIDKE-----------IYSKNKAAARIA------------- 54
I + ++VK L HG+ + S N +
Sbjct: 137 WLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196
Query: 55 ---------HSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERC 105
H + + + LD L VKK E
Sbjct: 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW------IVKKQNRPIQSGTNEKESK 250
Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
+ E +DL +N + + G T L++A R + IV LL +GA
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS-IVDALLDYGADP 309
Query: 166 NVVDGKTGKTPL 177
+ + K+G P+
Sbjct: 310 FIAN-KSGLRPV 320
Score = 53.9 bits (129), Expect = 1e-08
Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 22/118 (18%)
Query: 28 IVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE 87
++ + + + ++ ++ + + + ++
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK------------------ 269
Query: 88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
+N + L AA G IVD LLD GAD + +G +
Sbjct: 270 ----WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 35.4 bits (81), Expect = 0.015
Identities = 13/105 (12%), Positives = 30/105 (28%)
Query: 73 NLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
D + S+ +K N + + L + +E+ L ++ ++ N
Sbjct: 31 THDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRN 90
Query: 133 FKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
+ + + N+ + G TPL
Sbjct: 91 SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 135
Score = 27.7 bits (61), Expect = 3.9
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELE 61
+ IA ++G+ IV L ++GA NK+ R LE
Sbjct: 286 CLNIAARLGNISIVDALLDYGADPFI----ANKSGLRPVDFGAGLE 327
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 68.4 bits (168), Expect = 6e-14
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD---SIVRKLLRHGAY 164
L +AA G EEIV LL+++GAD+ + + G T LH+ + + LL +
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 165 YNVVDG-----KTGKTPLLHAGK 182
++ G TP AG
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGV 206
Score = 63.8 bits (156), Expect = 2e-12
Identities = 23/86 (26%), Positives = 29/86 (33%), Gaps = 15/86 (17%)
Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFK-------------SATGFTALHMACRFHDDDSI 154
AL A +V LL GA V+ + G L A ++ I
Sbjct: 78 ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE-I 136
Query: 155 VRKLLRHGAYYNVVDGKTGKTPLLHA 180
VR L+ HGA D G T L
Sbjct: 137 VRLLIEHGADIRAQD-SLGNTVLHIL 161
Score = 61.1 bits (149), Expect = 2e-11
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 107 SALIYAAWKG-YEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA-- 163
S L+ AA + + + LL G +V+ + A G TALH+A +D+ L+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAA-LYDNLEAAMVLMEAAPEL 63
Query: 164 ---YYNVVDGKTGKTPLLHA 180
G+T L A
Sbjct: 64 VFEPMTSEL-YEGQTALHIA 82
Score = 40.3 bits (95), Expect = 3e-04
Identities = 4/47 (8%), Positives = 11/47 (23%), Gaps = 6/47 (12%)
Query: 92 IEDGACINVSSERCGS------ALIYAAWKGYEEIVDLLLDNGADVN 132
+ ++ S A +G + L+ +
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224
Score = 38.0 bits (89), Expect = 0.002
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 192
+ L +A + +D ++ + L G + G+T LH A E VL+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRG-AMGETA-LHIAALYDNLEAAMVLM 57
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 67.1 bits (164), Expect = 2e-13
Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 30/185 (16%)
Query: 13 DHKPIAIAIQIGDPQIVKEL----QNHGAQIDKEIYSKNKAAARIAHSALELEERKAIND 68
D + + G P+ + L + + + Y++ A+ L + +N
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNA 60
Query: 69 LLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
+ L K D A + SAL A K + V LL++NG
Sbjct: 61 CIMPLLQIDK-------DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG 113
Query: 129 ADVNFKSATGF-------------TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKT-- 172
ADV+ ++ F L +A D +V LL + ++
Sbjct: 114 ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD--VVTYLLENPHQPASLEATDSL 171
Query: 173 GKTPL 177
G T L
Sbjct: 172 GNTVL 176
Score = 62.1 bits (151), Expect = 1e-11
Identities = 32/190 (16%), Positives = 48/190 (25%), Gaps = 65/190 (34%)
Query: 11 YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLL 70
Y+ H + IAI+ Q VK L +GA +
Sbjct: 88 YQGHSALHIAIEKRSLQCVKLLVENGADVHL----------------------------- 118
Query: 71 RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-- 128
+ G L AA ++V LL+N
Sbjct: 119 -------RACGRFFQKHQGTCFYFGE----------LPLSLAACTKQWDVVTYLLENPHQ 161
Query: 129 -ADVNFKSATGFTALHMACRFHDDD---------------SIVRKLLRHGAYYNVVDGKT 172
A + + G T LH D+ + +L + +
Sbjct: 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN-HQ 220
Query: 173 GKTPLLHAGK 182
G TPL A K
Sbjct: 221 GLTPLKLAAK 230
Score = 41.7 bits (98), Expect = 1e-04
Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+++A +V L + Q + + + + H+ + + + N L ++
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQ-PASLEATDSLGNTVLHALVMIADNSPENSALVIH-- 195
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
+ + +S+ + + L AA +G EI +L
Sbjct: 196 ----MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 65.2 bits (159), Expect = 1e-12
Identities = 46/265 (17%), Positives = 83/265 (31%), Gaps = 53/265 (20%)
Query: 13 DHKPIAIAIQIGDPQ----IVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAIND 68
+ + + G P ++ L H ++ E + + AL L ND
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKAL-LNLSAGRND 63
Query: 69 LLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
+ + LD + N + + D + AL A + + V+LL++ G
Sbjct: 64 TIPILLDIAEKT-GNMREFINSPFRDVYYRGQT------ALHIAIERRCKHYVELLVEKG 116
Query: 129 ADVNFK--------------SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT-- 172
ADV+ + G L +A + IV L +G + +
Sbjct: 117 ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH-IVHYLTENGHKQADLRRQDSR 175
Query: 173 GKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDY 232
G T L +A+N + +M L+L
Sbjct: 176 GNTVLHAL-------------------VAIADNTRENTKFVTKMYDLLLIKCA-----KL 211
Query: 233 NNFSLLKVTKNDAGETILDIAKKRG 257
+ L+ N+ G + L +A K G
Sbjct: 212 FPDTNLEALLNNDGLSPLMMAAKTG 236
Score = 37.1 bits (86), Expect = 0.004
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+++A P IV L +G + ++ ++ + H+ + AI D R N
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHK-QADLRRQDSRGNTVLHALV------AIADNTRENTK 195
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
F+ + + K D + + S L+ AA G I ++
Sbjct: 196 FVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 63.9 bits (155), Expect = 5e-12
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 11/129 (8%)
Query: 61 EERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCG------SALIYAAW 114
E + + + V + +G L A
Sbjct: 140 VEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVK 199
Query: 115 KGYE---EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGK 171
+ +VD ++ NG ++ K+A G TALH A ++ ++ LL+ A V+ +
Sbjct: 200 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRALVGTVN-E 257
Query: 172 TGKTPLLHA 180
G+T L A
Sbjct: 258 AGETALDIA 266
Score = 46.1 bits (109), Expect = 5e-06
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
G ++ + +AL YAA + + LLL A V + G TAL +A + H +
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE-C 274
Query: 155 VRKLLR 160
LL
Sbjct: 275 EE-LLE 279
Score = 43.1 bits (101), Expect = 5e-05
Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 49/152 (32%)
Query: 121 VDLLLDNGADVNFK------SATGFTALHMACRFHDDDS--IVRKLLRHGAYYNVVDGKT 172
V NG D A LH+A + + S +V ++++G + +
Sbjct: 167 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD- 225
Query: 173 GKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDY 232
G T L +A + ++ D +K L+
Sbjct: 226 GNTALHYA---------------------------ALYNQPDCLKLLLKGR------ALV 252
Query: 233 NNFSLLKVTKNDAGETILDIAKKRGFPLLEEL 264
T N+AGET LDIA+K+ EEL
Sbjct: 253 G-------TVNEAGETALDIARKKHHKECEEL 277
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 62.1 bits (151), Expect = 1e-11
Identities = 35/207 (16%), Positives = 63/207 (30%), Gaps = 54/207 (26%)
Query: 79 NVRSNKYDEVKKNIEDGACINVSSERCG-----------SALIYAAWKGYEEIVDLLLDN 127
N+ + + D + ++ + + +AL A + +V LL++N
Sbjct: 64 NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123
Query: 128 GADVNFKS--------------ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKT 172
GADV + G L +A IV+ LL++ + +
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA--IVKFLLQNSWQPADISARD 181
Query: 173 --GKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPG 230
G T L + +A+N + M + IL
Sbjct: 182 SVGNTVLHALVE-------------------VADNTVDNTKFVTSMYNEILILGA----- 217
Query: 231 DYNNFSLLKVTKNDAGETILDIAKKRG 257
+ L+ N G T L +A G
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSG 244
Score = 50.6 bits (121), Expect = 1e-07
Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 14/132 (10%)
Query: 16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
P+++A IVK L + Q +I +++ + H+ +E + D N
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQ-PADISARDSVGNTVLHALVE------VADNTVDNTK 203
Query: 76 FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
F+ ++ + K +++ + + L AA G ++ +L
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH----- 258
Query: 136 ATGFTALHMACR 147
H A
Sbjct: 259 --EPECRHAAAH 268
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 58.9 bits (142), Expect = 2e-10
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 100 VSSERCGSALIYA---AWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR 156
E +AL A + IVD L+ N +++ ++ G TALH C D+ ++
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL-TDNAECLK 222
Query: 157 KLLRHGAYYNVVDGKTGKTPLLHA 180
LLR A + + G+TPL A
Sbjct: 223 LLLRGKASIEIANES-GETPLDIA 245
Score = 48.1 bits (114), Expect = 9e-07
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
+++ ++ + + +AL Y E + LLL A + + +G T L +A R
Sbjct: 192 VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 59.0 bits (142), Expect = 3e-10
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 95 GACIN--VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 152
GA +N + + LI A + LL NGA+VN + G LH A
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI-LGHT 281
Query: 153 SIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
+ L+ GA D G+ PL A
Sbjct: 282 GLACLFLKRGADLGARD-SEGRDPLTIA 308
Score = 44.4 bits (104), Expect = 2e-05
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
GA +N + L +A G+ + L L GAD+ + + G L +A + D +
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
Query: 155 VRKLLRHGAYYN 166
LLR
Sbjct: 318 --TLLRLAKMRE 327
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 57.6 bits (139), Expect = 9e-10
Identities = 16/144 (11%), Positives = 38/144 (26%), Gaps = 5/144 (3%)
Query: 39 IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACI 98
I + + +++ ++ + L ++ K+ D
Sbjct: 30 FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQ-VRQLLCLYYAHYNRNAKQLWSDAHKK 88
Query: 99 NVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRK 157
+ SE + + LLL + V A + A +A H ++ +
Sbjct: 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH--VLNR 146
Query: 158 LLRHGAYYNVVDGKT-GKTPLLHA 180
L + + A
Sbjct: 147 LCELAPTEIMAMIQAENYHAFRLA 170
Score = 49.2 bits (117), Expect = 5e-07
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 88 VKKNIEDGACINVSSERCG--SALIYAAWKGYEEIVDLLLDNGADVNFK--SATGFTALH 143
+ + E ++ + A AA G+ +++ L + A + A
Sbjct: 144 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 203
Query: 144 MACRFHDDDSIVRKLLRHGAYYNVVD 169
A +++ LL +
Sbjct: 204 WAAVGRGHHNVINFLLDCPVMLAYAE 229
Score = 48.8 bits (116), Expect = 7e-07
Identities = 17/157 (10%), Positives = 43/157 (27%), Gaps = 6/157 (3%)
Query: 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
+ G+ + + H ++ + + + + E +LR
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLR 283
Query: 72 LNLD--FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA 129
+ + ++ I+ A L A G + LLL +
Sbjct: 284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343
Query: 130 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
+ A + ++ D + L H +++
Sbjct: 344 VLALTKANNY---YINETGGRLD-LRAVALEHHHHHH 376
Score = 42.2 bits (99), Expect = 1e-04
Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 33/196 (16%)
Query: 12 EDHKPIAIAIQIGDPQIVKELQNHGAQID-KEIYSKNKAAARIAHSALE---LEERKAIN 67
E++ +A + G ++ L I ++N A R A A+ IN
Sbjct: 162 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA--AVGRGHHN---VIN 216
Query: 68 DLLRLNLDF---LKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124
LL + + V I + A + G ++V
Sbjct: 217 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL---KEMHDAFKLSNPDGVFDLVT-- 271
Query: 125 LDNGADVNFKSATGFTALHMACRFHDDDS--IVRKL-----LRHGAYYNVVDGKTGKTPL 177
+ GF L R +D+ +R L ++ A + G L
Sbjct: 272 -------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD-ANELL 323
Query: 178 LHA-GKGAREVNTVLL 192
A G + +LL
Sbjct: 324 RLALRLGNQGACALLL 339
Score = 37.6 bits (87), Expect = 0.003
Identities = 12/115 (10%), Positives = 34/115 (29%), Gaps = 12/115 (10%)
Query: 94 DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA-----CRF 148
A + +E + A +G+ +++ LLD + + F R
Sbjct: 188 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH 247
Query: 149 HDDDSIVRKLLRHGA---YYNVVD---GKTGKTPLLHAGK-GAREVNTVLLYFIH 196
+ + + +++V G L + + + + + +
Sbjct: 248 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS 302
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 54.5 bits (131), Expect = 1e-08
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 9/137 (6%)
Query: 44 YSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSE 103
Y +++ A R L DLL + F + G E
Sbjct: 120 YVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQ-------PLPGPDAQAPEE 172
Query: 104 RCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 163
+ A + +VD ++ NG ++ K+A G TALH A ++ ++ LL+ A
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRA 231
Query: 164 YYNVVDGKTGKTPLLHA 180
V+ + G+T L A
Sbjct: 232 LVGTVN-EAGETALDIA 247
Score = 36.0 bits (83), Expect = 0.010
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 17/128 (13%)
Query: 20 AIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKN 79
AI D V E +G + + + A L L + A L L +DF+
Sbjct: 139 AICNRDLLSVLEAFANGQDFGQPLPGPD--AQAPEELVLHLAVKVANQASLPL-VDFI-- 193
Query: 80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
I++G ++ + +AL YAA + + LLL A V + G
Sbjct: 194 ------------IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 241
Query: 140 TALHMACR 147
TAL +A +
Sbjct: 242 TALDIARK 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 2e-07
Identities = 42/215 (19%), Positives = 67/215 (31%), Gaps = 80/215 (37%)
Query: 8 YVPYEDHKPIAIAIQIGDPQIV-----KELQNHGAQIDKEIYSKNKAAA-----RIAHSA 57
++P + I++ G +V + L + K KA + RI S
Sbjct: 359 HLPAGKQ--VEISLVNGAKNLVVSGPPQSLYGLNLTLRKA-----KAPSGLDQSRIPFS- 410
Query: 58 LELEERKAINDLLRLNLDFLKNVRS---NKY--DEVKKNIEDGACINVSSERCGSAL--- 109
ERK L+ + FL V S + +D NVS +
Sbjct: 411 ----ERK-----LKFSNRFL-PVASPFHSHLLVPASDLINKDLVKNNVSFN--AKDIQIP 458
Query: 110 IYAAWKGY----------EEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL 159
+Y + G E IVD ++ V +++ T F A H
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIR--LPVKWETTTQFKATH---------------- 500
Query: 160 RHGAYYNVVD----GKTGKTPLLHA---GKGAREV 187
++D G +G L H G G R +
Sbjct: 501 -------ILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 46.6 bits (110), Expect = 5e-06
Identities = 47/288 (16%), Positives = 76/288 (26%), Gaps = 117/288 (40%)
Query: 14 HKPIAIAIQIG------------DPQIVKELQNHG---------------AQIDKEIYSK 46
K I + IG P I+++ + Q+ +
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 47 NKAAARIAHSALELEERKAIN------------DLLRLNLDFLKNVRSNKYDEVKKNIED 94
N + L +N L LNL K + D+ + I
Sbjct: 357 NSHLPAGKQVEISL-----VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--IP- 408
Query: 95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD--- 151
SER K + F F L +A FH
Sbjct: 409 ------FSER----------K---------------LKFS--NRF--LPVASPFHSHLLV 433
Query: 152 ---DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGA--REVNTVLLYFI-HEIF------ 199
D I + L+++ + + K + P+ G+ R ++ + I I
Sbjct: 434 PASDLINKDLVKNNVSF---NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 200 -KLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAG 246
T ILD FGPG + +L +N G
Sbjct: 491 ETTTQFKATHILD---------------FGPGGASGLGVL-THRNKDG 522
Score = 40.0 bits (93), Expect = 6e-04
Identities = 58/312 (18%), Positives = 101/312 (32%), Gaps = 116/312 (37%)
Query: 33 QNHGAQID---KEIYSKNKAAARIAHSALE-LEERK--AINDLLRLN---LDFL------ 77
Q G+Q ++Y +KAA + + A ++ +I D++ N L
Sbjct: 1624 Q--GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 78 KNVRSNKYDE-VKKNIEDGAC--------INVSSERC---GS------------ALI--- 110
K +R N Y + + I DG IN S AL
Sbjct: 1682 KRIREN-YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 111 YAAWKGYEEIVDLLLDNG---ADVNFKSATG-----FTALHMACR---FHDDDSIVRKLL 159
AA++ L G AD F A G + AL A + + +++
Sbjct: 1741 KAAFE-------DLKSKGLIPADATF--A-GHSLGEYAAL--ASLADVMSIESLV--EVV 1786
Query: 160 RH-GAYYN--VVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEM 216
+ G V + G++ + G A V F E + +++R+ +
Sbjct: 1787 FYRGMTMQVAVPRDELGRS---NYGMIAINPGRVAASFSQEALQ-------YVVERVGKR 1836
Query: 217 KSLILEGTKEFGPGDYNNFSLLKVTKND----AGET--------ILDIAKKRGFPL---- 260
++E +YN +N AG+ +L+ K + +
Sbjct: 1837 TGWLVE------IVNYN-------VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 261 ----LEELEKKL 268
LEE+E L
Sbjct: 1884 KSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 5e-07
Identities = 42/263 (15%), Positives = 87/263 (33%), Gaps = 58/263 (22%)
Query: 21 IQIGDPQIVKELQ-NHGAQIDKEIYSK-----------NKAAARIAHSALELEE----RK 64
+ + + V + K I SK + L ++ +K
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 65 AINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124
+ ++LR+N FL + + +E+ +++ + Y E D L
Sbjct: 82 FVEEVLRINYKFLMS-------------------PIKTEQRQPSMMT---RMYIEQRDRL 119
Query: 125 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKL--LRHGAYYNVVDGK--TGKTPLLHA 180
N V F ++ R + + L LR ++DG +GKT + A
Sbjct: 120 Y-NDNQV-------FAKYNV-SRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWV--A 167
Query: 181 GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKV 240
V +IF L N + L+ ++ L+ + + ++ S +K+
Sbjct: 168 LDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSNIKL 225
Query: 241 TKNDAGETILDIAKKRGFP--LL 261
+ + + K + + LL
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLL 248
Score = 42.9 bits (100), Expect = 8e-05
Identities = 43/272 (15%), Positives = 88/272 (32%), Gaps = 62/272 (22%)
Query: 21 IQIG----DPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLN--- 73
+ + +++ LQ QID S++ ++ I ++ + LL+
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSKPYE 244
Query: 74 --LDFLKNVRSNKYDEVKKNIE--DGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
L L NV++ K + +C I +++ R ++++ D
Sbjct: 245 NCLLVLLNVQN------AKAWNAFNLSCKILLTT-R------------FKQVTD------ 279
Query: 129 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVN 188
++ + T + H + D+ + LL +D + P N
Sbjct: 280 -FLSAATTTHISLDHHSMTLTPDEV--KSLLL-----KYLDCRPQDLPRE-----VLTTN 326
Query: 189 TVLLYFIHEIFKLMAN-NDTTILDRLDEMKSLILEGTKEFGPGDY-NNFSLLKVTKNDAG 246
L I E + D D++ ++I P +Y F L V A
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 247 --ETILDI---AKKRGFP--LLEELEKK-LAE 270
+L + + ++ +L K L E
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Score = 35.6 bits (81), Expect = 0.017
Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 47/171 (27%)
Query: 11 YEDHKPIAIAIQIGDPQIVKELQNHGA---QIDKEIYSKNKAAARIAH--SALELEERKA 65
Y H+ I + I K + +D+ YS I H +E ER
Sbjct: 443 YALHRSI-----VDHYNIPKTFDSDDLIPPYLDQYFYS------HIGHHLKNIEHPERMT 491
Query: 66 INDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGY-------- 117
+ ++ L+ FL+ K D N S + +K Y
Sbjct: 492 LFRMVFLDFRFLEQ----------KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 118 EEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL--RHGAYYN 166
E +V+ +LD F + ++ D ++R L A +
Sbjct: 542 ERLVNAILD------FLPKIEENLIC--SKYTD---LLRIALMAEDEAIFE 581
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.4
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 25 DPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALE 59
+ Q +K+LQ A + ++Y+ + A A +A + +E
Sbjct: 18 EKQALKKLQ---ASL--KLYADDSAPA-LAIKATME 47
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar
binding, sugar binding protein, beta-galactoside binding
lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A
{Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A*
1ulf_A* 1ulg_A* 1uld_A*
Length = 150
Score = 27.5 bits (61), Expect = 2.8
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 131 VNFKSATGFTALHMACRFHDDDSIVR 156
NF SA LH++ R ++ IV
Sbjct: 39 FNFLSAGENILLHISIRP-GENVIVF 63
>3naj_A Galectin-8; sugar binding protein; HET: GAL BGC; 2.80A {Homo
sapiens} PDB: 3ojb_A
Length = 291
Score = 28.2 bits (62), Expect = 2.9
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 130 DVNFKSATGF-----TALHMACRFHDDDSIVRKLLRHG 162
V+ ++ + A H RF IV L +
Sbjct: 47 QVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNTLINE 84
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 28.0 bits (63), Expect = 4.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 154 IVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVN 188
+R +L A+ N+ + KT T GK RE
Sbjct: 840 AIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQ 874
>3ap9_A Galectin-8; beta-sandwich, carbohydrate/sugar binding, lacto-N
fucopentaose III, sugar binding protein; HET: GAL FUC
NAG BGC; 1.33A {Homo sapiens} PDB: 3ap4_A 3ap5_A*
3ap6_A* 3ap7_A* 3apb_A 2yv8_A 2yxs_A*
Length = 154
Score = 26.5 bits (58), Expect = 6.6
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 131 VNFKSATGF-----TALHMACRFHDDDSIVRKLLRH 161
V+ ++ + A H RF IV L +
Sbjct: 48 VDLQNGSSVKPRADVAFHFNPRFKRAGCIVCNTLIN 83
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 26.7 bits (60), Expect = 7.4
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYS--KNKAAARIAHSALELEERKAINDL 69
+ +P+ +A P ++L+ G ++ + ++ I E + R DL
Sbjct: 125 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE-KARLEARDL 183
Query: 70 L------RLNLD 75
+ RL +D
Sbjct: 184 ILVDTAGRLQID 195
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar
protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A*
2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Length = 148
Score = 26.5 bits (58), Expect = 7.7
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 130 DVNFKS--ATGFTALHMACRFHDDDSIVRKLLRHG 162
VNF++ + A H RF D +V ++G
Sbjct: 46 AVNFQTGFSGNDIAFHFNPRFEDGGYVVCNTRQNG 80
>2r0h_A CGL3 lectin; galectin-related, sugar binding protein, chitotriose,
chitooligosaccharides; HET: CTO; 1.90A {Coprinus
cinereus} PDB: 2r0f_A*
Length = 164
Score = 26.2 bits (57), Expect = 9.3
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 131 VNFKSATGFTALHMACRFHDDDSIVR 156
VN +A G LH+ R +++ V
Sbjct: 48 VNLINAKGDVLLHIGIRR-RENAFVF 72
>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3
Length = 129
Score = 25.7 bits (56), Expect = 9.5
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 131 VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
+N T LH RF + +IV L +
Sbjct: 30 INLGQGTDKLNLHFNPRF-SESTIVCNSLDGSNW 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.394
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,360,289
Number of extensions: 273276
Number of successful extensions: 1828
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1392
Number of HSP's successfully gapped: 322
Length of query: 271
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,133,061
Effective search space: 739817919
Effective search space used: 739817919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)