Query psy8013
Match_columns 252
No_of_seqs 261 out of 2032
Neff 11.7
Searched_HMMs 46136
Date Sat Aug 17 00:33:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1111|consensus 100.0 1.4E-37 3E-42 226.5 15.4 247 1-251 5-380 (426)
2 cd03796 GT1_PIG-A_like This fa 100.0 1.2E-32 2.6E-37 217.8 22.5 249 1-250 4-380 (398)
3 PRK10307 putative glycosyl tra 100.0 1.5E-26 3.4E-31 184.0 20.6 181 1-182 5-211 (412)
4 PF13439 Glyco_transf_4: Glyco 99.9 9.8E-27 2.1E-31 164.2 11.9 169 1-180 2-177 (177)
5 PLN02871 UDP-sulfoquinovose:DA 99.9 1.7E-23 3.7E-28 168.6 19.7 173 5-182 68-246 (465)
6 TIGR03449 mycothiol_MshA UDP-N 99.9 3.5E-24 7.5E-29 170.3 15.2 171 10-182 19-204 (405)
7 PF13579 Glyco_trans_4_4: Glyc 99.9 6.4E-24 1.4E-28 147.3 14.7 156 11-173 1-160 (160)
8 TIGR02472 sucr_P_syn_N sucrose 99.9 4.3E-23 9.4E-28 165.0 18.6 174 7-182 22-226 (439)
9 PRK00654 glgA glycogen synthas 99.9 1.2E-22 2.5E-27 163.6 20.1 180 1-182 5-247 (466)
10 TIGR02149 glgA_Coryne glycogen 99.9 4.1E-23 9E-28 163.3 17.0 172 1-182 5-186 (388)
11 TIGR03088 stp2 sugar transfera 99.9 1.6E-22 3.4E-27 159.3 17.2 164 9-182 12-177 (374)
12 cd04962 GT1_like_5 This family 99.9 3E-22 6.6E-27 157.5 15.4 172 7-182 8-182 (371)
13 TIGR02095 glgA glycogen/starch 99.9 1.2E-21 2.6E-26 158.3 18.3 180 1-182 5-255 (473)
14 cd03800 GT1_Sucrose_synthase T 99.9 1.9E-21 4E-26 154.4 17.0 179 3-183 13-205 (398)
15 cd03791 GT1_Glycogen_synthase_ 99.9 3.2E-21 7E-26 156.3 18.4 181 1-183 4-261 (476)
16 TIGR02468 sucrsPsyn_pln sucros 99.9 2.3E-20 5E-25 157.3 19.0 173 8-182 192-444 (1050)
17 cd04955 GT1_like_6 This family 99.9 2.1E-20 4.5E-25 146.6 17.4 169 3-181 7-180 (363)
18 PLN02316 synthase/transferase 99.9 4.2E-20 9E-25 156.0 19.6 171 2-182 593-804 (1036)
19 PRK10125 putative glycosyl tra 99.8 1.2E-19 2.6E-24 143.1 17.9 166 9-177 11-224 (405)
20 cd03802 GT1_AviGT4_like This f 99.8 9.6E-20 2.1E-24 141.3 16.7 158 2-182 6-167 (335)
21 PRK14098 glycogen synthase; Pr 99.8 4.3E-19 9.4E-24 142.9 18.6 180 2-183 11-272 (489)
22 cd03814 GT1_like_2 This family 99.8 2.2E-19 4.7E-24 140.7 16.4 174 1-183 4-183 (364)
23 cd03819 GT1_WavL_like This fam 99.8 9.2E-20 2E-24 142.6 13.9 158 10-183 9-166 (355)
24 cd03794 GT1_wbuB_like This fam 99.8 3.8E-19 8.3E-24 140.3 17.2 182 1-183 4-206 (394)
25 PRK15179 Vi polysaccharide bio 99.8 4.6E-19 1E-23 146.3 17.8 171 9-181 292-498 (694)
26 cd05844 GT1_like_7 Glycosyltra 99.8 1E-19 2.2E-24 143.0 13.3 172 2-182 5-182 (367)
27 cd03795 GT1_like_4 This family 99.8 4.3E-19 9.3E-24 138.8 16.6 175 1-183 4-178 (357)
28 PRK14099 glycogen synthase; Pr 99.8 1.1E-18 2.3E-23 140.5 18.6 180 2-183 9-260 (485)
29 cd03801 GT1_YqgM_like This fam 99.8 1.6E-18 3.4E-23 135.7 18.5 176 1-181 4-184 (374)
30 cd03798 GT1_wlbH_like This fam 99.8 3.2E-18 6.9E-23 134.3 20.0 181 1-184 3-190 (377)
31 cd03807 GT1_WbnK_like This fam 99.8 6.3E-19 1.4E-23 137.9 15.9 171 2-183 5-177 (365)
32 PRK15427 colanic acid biosynth 99.8 8.9E-19 1.9E-23 138.6 15.9 175 2-182 6-214 (406)
33 PF09314 DUF1972: Domain of un 99.8 5.6E-18 1.2E-22 116.7 15.2 169 4-175 10-185 (185)
34 cd03825 GT1_wcfI_like This fam 99.8 2.2E-18 4.8E-23 135.2 14.6 136 8-181 10-175 (365)
35 cd03809 GT1_mtfB_like This fam 99.8 1.6E-18 3.5E-23 135.9 13.4 171 2-183 5-182 (365)
36 PRK15484 lipopolysaccharide 1, 99.8 5.2E-18 1.1E-22 133.4 15.6 160 2-182 9-178 (380)
37 cd03821 GT1_Bme6_like This fam 99.8 1.2E-17 2.6E-22 131.1 17.6 180 1-183 4-189 (375)
38 PLN02939 transferase, transfer 99.8 5.9E-17 1.3E-21 135.3 22.1 182 2-183 487-743 (977)
39 cd04951 GT1_WbdM_like This fam 99.8 1.3E-17 2.7E-22 130.7 17.0 161 9-182 10-171 (360)
40 PLN02846 digalactosyldiacylgly 99.8 3.5E-17 7.7E-22 129.0 19.0 173 1-183 9-214 (462)
41 TIGR02470 sucr_synth sucrose s 99.8 1.7E-17 3.7E-22 137.3 17.1 174 8-183 276-515 (784)
42 cd03816 GT1_ALG1_like This fam 99.8 1.2E-17 2.7E-22 132.8 13.7 169 10-181 13-198 (415)
43 cd03823 GT1_ExpE7_like This fa 99.8 4.5E-17 9.7E-22 127.3 15.8 172 1-183 4-184 (359)
44 cd03817 GT1_UGDG_like This fam 99.8 1.3E-16 2.7E-21 125.4 17.5 176 1-183 4-188 (374)
45 cd03820 GT1_amsD_like This fam 99.7 1.6E-16 3.5E-21 123.4 17.3 168 2-182 5-173 (348)
46 cd03799 GT1_amsK_like This is 99.7 4.5E-17 9.8E-22 127.4 14.0 167 1-183 4-172 (355)
47 cd03822 GT1_ecORF704_like This 99.7 1.4E-16 3E-21 125.0 16.8 163 5-182 7-173 (366)
48 TIGR03087 stp1 sugar transfera 99.7 4.4E-17 9.6E-22 129.2 12.1 171 6-182 10-213 (397)
49 PRK15490 Vi polysaccharide bio 99.7 5.3E-16 1.1E-20 123.4 14.5 169 10-182 173-379 (578)
50 cd03812 GT1_CapH_like This fam 99.7 8.7E-16 1.9E-20 120.3 14.9 169 2-183 5-177 (358)
51 cd03808 GT1_cap1E_like This fa 99.7 3.3E-15 7.1E-20 116.5 17.8 169 10-184 9-182 (359)
52 cd03818 GT1_ExpC_like This fam 99.7 2E-15 4.3E-20 119.8 16.5 163 2-183 5-195 (396)
53 PLN00142 sucrose synthase 99.7 3.1E-16 6.8E-21 130.1 11.6 174 8-183 300-538 (815)
54 PLN02275 transferase, transfer 99.7 1.7E-15 3.6E-20 119.0 14.7 166 11-182 15-202 (371)
55 cd03792 GT1_Trehalose_phosphor 99.7 8.7E-16 1.9E-20 120.9 12.5 146 9-177 10-165 (372)
56 PRK09922 UDP-D-galactose:(gluc 99.7 4.8E-15 1E-19 116.1 16.4 158 6-180 9-171 (359)
57 cd03813 GT1_like_3 This family 99.7 1.6E-15 3.4E-20 122.8 13.5 98 84-183 172-285 (475)
58 cd03805 GT1_ALG2_like This fam 99.7 6.7E-15 1.4E-19 116.8 15.8 168 10-183 12-197 (392)
59 PRK00726 murG undecaprenyldiph 99.7 2.8E-15 6E-20 117.4 12.8 155 9-181 10-170 (357)
60 cd03811 GT1_WabH_like This fam 99.6 5.8E-15 1.3E-19 114.8 13.5 164 10-184 11-178 (353)
61 PF13477 Glyco_trans_4_2: Glyc 99.6 2.1E-14 4.6E-19 97.0 13.4 128 14-149 10-139 (139)
62 cd03785 GT1_MurG MurG is an N- 99.6 1.3E-14 2.8E-19 113.4 13.7 155 9-181 8-168 (350)
63 cd03806 GT1_ALG11_like This fa 99.6 5.7E-13 1.2E-17 106.2 18.8 174 4-183 4-230 (419)
64 PLN02949 transferase, transfer 99.5 1.9E-12 4.1E-17 103.8 16.6 170 5-179 38-257 (463)
65 TIGR01133 murG undecaprenyldip 99.5 4E-13 8.6E-18 105.0 12.3 149 11-180 8-165 (348)
66 PF08323 Glyco_transf_5: Starc 99.5 3E-13 6.5E-18 99.6 8.4 158 1-160 4-234 (245)
67 COG0297 GlgA Glycogen synthase 99.5 9E-12 2E-16 98.9 16.5 182 2-185 6-261 (487)
68 cd03793 GT1_Glycogen_synthase_ 99.4 6.1E-12 1.3E-16 100.7 12.5 97 83-183 146-266 (590)
69 PF08288 PIGA: PIGA (GPI ancho 99.3 8.6E-12 1.9E-16 73.2 7.6 85 40-124 5-89 (90)
70 cd04946 GT1_AmsK_like This fam 99.3 7.3E-11 1.6E-15 94.0 14.4 179 1-182 4-224 (407)
71 PHA01630 putative group 1 glyc 99.2 1E-09 2.2E-14 84.6 15.0 69 106-182 65-135 (331)
72 cd04950 GT1_like_1 Glycosyltra 99.2 1.5E-09 3.3E-14 85.6 16.0 164 11-183 16-191 (373)
73 cd03804 GT1_wbaZ_like This fam 99.1 6.8E-10 1.5E-14 86.9 9.4 166 6-183 8-192 (351)
74 PLN02501 digalactosyldiacylgly 99.1 1.7E-08 3.6E-13 82.8 17.1 167 2-183 328-532 (794)
75 PRK05749 3-deoxy-D-manno-octul 99.1 4.9E-09 1.1E-13 84.2 13.1 147 10-173 59-208 (425)
76 PF00862 Sucrose_synth: Sucros 99.1 1.1E-08 2.4E-13 80.1 14.1 190 8-199 293-547 (550)
77 PRK13609 diacylglycerol glucos 98.9 3.3E-09 7.2E-14 84.0 5.4 153 10-176 15-181 (380)
78 cd01635 Glycosyltransferase_GT 98.9 2.7E-08 5.8E-13 72.7 9.7 84 2-122 4-87 (229)
79 PRK09814 beta-1,6-galactofuran 98.8 2.1E-07 4.6E-12 72.3 14.3 100 76-176 54-157 (333)
80 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 2.8E-08 6.1E-13 78.2 8.6 154 17-176 15-176 (363)
81 TIGR00236 wecB UDP-N-acetylglu 98.8 3.4E-08 7.5E-13 77.8 8.1 100 72-174 73-173 (365)
82 TIGR02918 accessory Sec system 98.7 8.8E-07 1.9E-11 72.3 14.1 98 81-181 207-313 (500)
83 KOG2941|consensus 98.7 6.1E-07 1.3E-11 67.1 11.8 155 16-172 28-198 (444)
84 PRK12446 undecaprenyldiphospho 98.6 4.7E-06 1E-10 65.2 14.9 151 11-179 9-168 (352)
85 PF12000 Glyco_trans_4_3: Gkyc 98.6 1.3E-06 2.8E-11 60.0 10.0 143 26-180 1-171 (171)
86 cd04949 GT1_gtfA_like This fam 98.5 7.7E-07 1.7E-11 70.3 9.0 95 83-182 97-197 (372)
87 PLN02605 monogalactosyldiacylg 98.5 9E-07 2E-11 70.2 8.8 95 75-180 90-188 (382)
88 KOG1387|consensus 98.4 4E-05 8.7E-10 57.8 15.4 171 4-179 47-258 (465)
89 COG0707 MurG UDP-N-acetylgluco 98.4 1.6E-05 3.5E-10 61.8 12.9 152 11-180 11-169 (357)
90 PRK00025 lpxB lipid-A-disaccha 98.4 3.8E-07 8.3E-12 72.3 4.2 145 19-175 19-164 (380)
91 PF04413 Glycos_transf_N: 3-De 98.3 7.5E-06 1.6E-10 57.7 9.5 145 12-172 32-179 (186)
92 PF11997 DUF3492: Domain of un 98.3 3E-05 6.4E-10 58.0 12.6 78 85-164 172-267 (268)
93 PRK13608 diacylglycerol glucos 98.2 4.5E-06 9.8E-11 66.4 7.4 89 75-177 94-182 (391)
94 TIGR00215 lpxB lipid-A-disacch 98.2 2.2E-06 4.8E-11 67.9 4.6 152 10-174 12-167 (385)
95 KOG0853|consensus 98.2 5.3E-05 1.2E-09 60.5 11.8 53 191-244 422-474 (495)
96 PF04007 DUF354: Protein of un 98.0 3.7E-05 8E-10 59.2 8.0 151 14-183 13-168 (335)
97 PF05693 Glycogen_syn: Glycoge 97.8 3.8E-05 8.1E-10 62.5 5.6 93 86-183 144-261 (633)
98 PF06925 MGDG_synth: Monogalac 97.6 0.00064 1.4E-08 47.4 8.8 87 74-171 78-166 (169)
99 TIGR00661 MJ1255 conserved hyp 97.5 0.0025 5.4E-08 49.5 11.4 102 10-120 9-123 (321)
100 PHA01633 putative glycosyl tra 97.5 0.00063 1.4E-08 52.6 7.4 62 110-183 70-131 (335)
101 PF12038 DUF3524: Domain of un 97.4 0.0038 8.2E-08 42.4 9.2 81 78-159 52-137 (168)
102 PF02350 Epimerase_2: UDP-N-ac 97.3 0.0014 3.1E-08 51.2 7.8 100 73-176 55-157 (346)
103 cd03788 GT1_TPS Trehalose-6-Ph 97.3 0.00036 7.9E-09 56.8 4.6 95 85-182 131-244 (460)
104 COG1519 KdtA 3-deoxy-D-manno-o 97.3 0.012 2.5E-07 46.4 12.3 141 12-172 60-205 (419)
105 TIGR03568 NeuC_NnaA UDP-N-acet 97.3 0.0019 4.1E-08 51.0 8.4 97 72-176 80-179 (365)
106 COG0381 WecB UDP-N-acetylgluco 97.2 0.003 6.5E-08 49.0 7.9 97 73-174 80-177 (383)
107 PLN03063 alpha,alpha-trehalose 97.0 0.0025 5.5E-08 55.3 7.4 94 86-182 148-259 (797)
108 PRK14501 putative bifunctional 97.0 0.0032 7E-08 54.4 7.3 95 85-182 133-245 (726)
109 TIGR02400 trehalose_OtsA alpha 96.9 0.0018 4E-08 52.6 5.4 95 85-182 127-239 (456)
110 PF08660 Alg14: Oligosaccharid 96.8 0.025 5.5E-07 39.3 9.4 136 10-155 7-160 (170)
111 COG4641 Uncharacterized protei 96.7 0.18 3.9E-06 39.3 13.8 160 10-186 13-182 (373)
112 TIGR03492 conserved hypothetic 96.6 0.028 6.1E-07 45.0 10.0 155 9-174 5-189 (396)
113 TIGR02094 more_P_ylases alpha- 96.6 0.01 2.2E-07 49.9 7.5 100 84-183 160-311 (601)
114 cd03784 GT1_Gtf_like This fami 96.6 0.0044 9.6E-08 49.7 5.0 103 12-121 12-136 (401)
115 TIGR01426 MGT glycosyltransfer 96.3 0.016 3.6E-07 46.3 7.0 94 17-117 12-120 (392)
116 COG1817 Uncharacterized protei 96.3 0.047 1E-06 41.2 8.5 151 14-183 13-170 (346)
117 PF13528 Glyco_trans_1_3: Glyc 96.3 0.03 6.5E-07 43.4 8.2 99 12-121 13-125 (318)
118 PRK10017 colanic acid biosynth 95.8 0.46 1E-05 38.5 12.7 85 85-173 117-207 (426)
119 PHA03392 egt ecdysteroid UDP-g 95.7 0.092 2E-06 43.6 8.6 30 8-37 28-58 (507)
120 TIGR03590 PseG pseudaminic aci 95.5 0.14 3E-06 38.9 8.6 76 12-95 15-90 (279)
121 PF03033 Glyco_transf_28: Glyc 95.2 0.012 2.6E-07 39.5 1.8 99 15-120 13-131 (139)
122 TIGR00715 precor6x_red precorr 94.6 0.64 1.4E-05 34.8 9.5 96 10-121 6-103 (256)
123 COG4671 Predicted glycosyl tra 94.0 1.3 2.9E-05 34.5 10.1 161 12-174 23-201 (400)
124 cd04299 GT1_Glycogen_Phosphory 93.1 0.4 8.7E-06 41.8 6.9 33 4-36 99-131 (778)
125 TIGR02398 gluc_glyc_Psyn gluco 92.2 0.54 1.2E-05 38.8 6.3 95 85-182 132-265 (487)
126 PLN02208 glycosyltransferase f 91.5 2.7 5.9E-05 34.4 9.5 98 12-114 16-131 (442)
127 PF13524 Glyco_trans_1_2: Glyc 91.3 0.13 2.8E-06 31.6 1.5 42 190-232 50-91 (92)
128 COG1703 ArgK Putative periplas 90.6 4.7 0.0001 30.9 9.2 103 11-120 62-176 (323)
129 PF02684 LpxB: Lipid-A-disacch 90.5 0.69 1.5E-05 36.8 5.2 144 14-174 11-162 (373)
130 PLN02448 UDP-glycosyltransfera 90.2 3.7 7.9E-05 33.9 9.3 98 14-115 24-134 (459)
131 PRK01021 lpxB lipid-A-disaccha 90.0 0.67 1.4E-05 39.0 4.8 92 71-174 296-390 (608)
132 COG0569 TrkA K+ transport syst 89.8 1.9 4.1E-05 31.7 6.6 96 11-120 6-103 (225)
133 PLN00016 RNA-binding protein; 89.5 3.8 8.3E-05 32.8 8.8 28 11-38 63-90 (378)
134 PF13460 NAD_binding_10: NADH( 89.1 5.9 0.00013 27.7 9.4 89 10-117 4-96 (183)
135 COG0380 OtsA Trehalose-6-phosp 89.0 3.2 7E-05 34.2 7.9 96 85-183 147-262 (486)
136 cd06533 Glyco_transf_WecG_TagA 88.8 6.3 0.00014 27.6 8.7 106 7-121 26-135 (171)
137 PLN03064 alpha,alpha-trehalose 88.8 1.5 3.3E-05 39.2 6.4 94 86-182 232-343 (934)
138 PF03808 Glyco_tran_WecB: Glyc 87.7 7.5 0.00016 27.2 9.1 106 8-122 29-138 (172)
139 COG0763 LpxB Lipid A disacchar 87.5 1.9 4.2E-05 34.0 5.6 142 16-174 16-165 (381)
140 PLN02173 UDP-glucosyl transfer 87.1 9.9 0.00021 31.3 9.7 100 12-115 17-130 (449)
141 PLN02670 transferase, transfer 87.0 6.1 0.00013 32.8 8.5 101 12-116 18-137 (472)
142 PRK10117 trehalose-6-phosphate 86.5 2.3 4.9E-05 35.0 5.8 95 85-182 123-236 (474)
143 PLN03007 UDP-glucosyltransfera 86.4 6.9 0.00015 32.6 8.6 25 14-38 19-43 (482)
144 PLN02210 UDP-glucosyl transfer 86.3 6.8 0.00015 32.4 8.5 100 12-115 20-129 (456)
145 PLN00414 glycosyltransferase f 86.3 11 0.00024 31.0 9.6 99 12-115 16-132 (446)
146 COG3980 spsG Spore coat polysa 85.8 5.2 0.00011 30.3 6.8 93 2-115 6-98 (318)
147 TIGR03609 S_layer_CsaB polysac 85.6 14 0.00031 28.3 12.8 141 3-172 4-154 (298)
148 PF11440 AGT: DNA alpha-glucos 84.7 6.6 0.00014 29.8 6.8 122 11-151 1-130 (355)
149 COG1087 GalE UDP-glucose 4-epi 82.3 5 0.00011 30.8 5.5 68 10-92 6-75 (329)
150 PLN02992 coniferyl-alcohol glu 81.8 15 0.00032 30.6 8.6 100 12-115 17-130 (481)
151 TIGR01470 cysG_Nterm siroheme 81.2 8.5 0.00019 27.8 6.4 80 14-113 18-97 (205)
152 PF01012 ETF: Electron transfe 80.7 16 0.00035 25.2 9.9 103 13-120 16-124 (164)
153 KOG3742|consensus 80.1 0.41 9E-06 38.3 -0.6 92 86-182 175-291 (692)
154 PF05368 NmrA: NmrA-like famil 80.0 8.5 0.00018 28.3 6.3 91 10-115 4-99 (233)
155 COG0438 RfaG Glycosyltransfera 79.8 25 0.00054 26.9 12.5 163 7-181 11-188 (381)
156 PF02585 PIG-L: GlcNAc-PI de-N 79.7 14 0.00031 24.1 7.0 82 13-96 10-111 (128)
157 cd00532 MGS-like MGS-like doma 79.6 13 0.00029 23.7 6.9 89 15-118 12-107 (112)
158 COG2099 CobK Precorrin-6x redu 79.5 24 0.00051 26.5 8.5 96 10-122 8-105 (257)
159 PF00289 CPSase_L_chain: Carba 78.5 15 0.00032 23.5 7.7 94 12-113 9-102 (110)
160 PLN02764 glycosyltransferase f 78.5 31 0.00066 28.6 9.3 99 12-115 17-133 (453)
161 PLN02562 UDP-glycosyltransfera 78.4 24 0.00052 29.2 8.8 47 12-58 18-66 (448)
162 PF12996 DUF3880: DUF based on 78.3 4.7 0.0001 24.0 3.6 46 137-185 14-59 (79)
163 PF00551 Formyl_trans_N: Formy 78.0 18 0.0004 25.5 7.1 81 12-98 9-92 (181)
164 PRK06849 hypothetical protein; 77.8 4 8.7E-05 32.8 4.2 76 10-94 10-85 (389)
165 PF03308 ArgK: ArgK protein; 77.7 9.6 0.00021 28.7 5.7 102 11-119 40-153 (266)
166 PRK04148 hypothetical protein; 77.2 9.3 0.0002 25.5 5.0 85 16-119 27-111 (134)
167 PF00201 UDPGT: UDP-glucoronos 77.2 1 2.2E-05 37.5 0.7 28 11-38 10-37 (500)
168 COG2120 Uncharacterized protei 77.1 15 0.00032 27.3 6.7 20 20-39 30-49 (237)
169 COG3854 SpoIIIAA ncharacterize 77.0 28 0.00061 25.9 8.8 45 76-120 209-253 (308)
170 cd00287 ribokinase_pfkB_like r 76.8 23 0.0005 24.9 9.0 23 10-35 35-57 (196)
171 PRK12342 hypothetical protein; 76.0 31 0.00068 26.0 8.2 107 10-120 33-146 (254)
172 TIGR02858 spore_III_AA stage I 75.8 22 0.00047 27.1 7.3 72 76-151 185-258 (270)
173 PLN02863 UDP-glucoronosyl/UDP- 75.8 19 0.0004 30.1 7.5 27 12-38 21-47 (477)
174 COG0052 RpsB Ribosomal protein 75.3 7.9 0.00017 28.7 4.6 32 86-119 157-188 (252)
175 COG2805 PilT Tfp pilus assembl 74.7 18 0.00038 28.1 6.4 100 8-120 133-233 (353)
176 COG1090 Predicted nucleoside-d 74.6 4.2 9.1E-05 30.8 3.2 30 10-39 4-33 (297)
177 TIGR01285 nifN nitrogenase mol 74.5 29 0.00063 28.5 8.3 77 13-114 319-395 (432)
178 PLN03015 UDP-glucosyl transfer 74.2 49 0.0011 27.6 9.4 98 12-113 15-131 (470)
179 PLN02534 UDP-glycosyltransfera 74.2 22 0.00048 29.8 7.6 27 12-38 20-46 (491)
180 PRK03359 putative electron tra 74.1 29 0.00062 26.2 7.5 106 10-119 34-148 (256)
181 PF10933 DUF2827: Protein of u 74.1 43 0.00092 26.6 8.5 140 10-172 17-160 (364)
182 PRK12815 carB carbamoyl phosph 73.8 50 0.0011 30.9 10.3 83 16-115 577-659 (1068)
183 TIGR01369 CPSaseII_lrg carbamo 73.7 59 0.0013 30.4 10.7 81 17-115 577-658 (1050)
184 PF00070 Pyr_redox: Pyridine n 73.2 6.5 0.00014 23.2 3.4 25 13-37 7-31 (80)
185 PRK09620 hypothetical protein; 72.6 23 0.00051 26.2 6.7 23 15-37 30-52 (229)
186 PRK02122 glucosamine-6-phospha 72.3 12 0.00026 32.5 5.8 23 17-39 386-408 (652)
187 PLN02410 UDP-glucoronosyl/UDP- 72.1 56 0.0012 27.1 9.8 46 12-58 19-64 (451)
188 PRK07178 pyruvate carboxylase 71.9 32 0.00069 28.7 8.0 70 14-92 11-80 (472)
189 TIGR01214 rmlD dTDP-4-dehydror 71.3 13 0.00028 28.2 5.5 27 10-36 5-31 (287)
190 TIGR00639 PurN phosphoribosylg 71.3 35 0.00075 24.4 8.3 82 11-98 8-92 (190)
191 PRK08057 cobalt-precorrin-6x r 71.2 42 0.0009 25.2 9.4 94 10-121 8-103 (248)
192 COG1748 LYS9 Saccharopine dehy 70.9 19 0.00042 29.0 6.2 89 14-118 10-100 (389)
193 PRK05562 precorrin-2 dehydroge 70.6 35 0.00075 25.2 7.1 84 10-114 31-114 (223)
194 PF00258 Flavodoxin_1: Flavodo 70.5 9.5 0.00021 25.5 4.1 34 6-39 3-36 (143)
195 PRK08305 spoVFB dipicolinate s 70.5 8.5 0.00018 27.6 3.9 29 10-38 13-43 (196)
196 PF01370 Epimerase: NAD depend 70.3 8.3 0.00018 28.1 4.1 71 10-94 4-75 (236)
197 PF13241 NAD_binding_7: Putati 70.3 23 0.0005 22.2 5.5 75 14-115 16-90 (103)
198 PRK06719 precorrin-2 dehydroge 70.0 5.8 0.00013 27.3 2.9 26 12-37 20-45 (157)
199 TIGR02525 plasmid_TraJ plasmid 69.7 57 0.0012 26.3 10.0 43 77-120 218-260 (372)
200 KOG1192|consensus 69.0 7.4 0.00016 32.4 3.9 29 10-38 15-43 (496)
201 PLN02205 alpha,alpha-trehalose 68.8 18 0.0004 32.6 6.3 93 87-182 203-317 (854)
202 PLN02331 phosphoribosylglycina 68.3 43 0.00094 24.3 8.2 100 11-120 7-109 (207)
203 COG0240 GpsA Glycerol-3-phosph 68.1 54 0.0012 25.8 7.9 100 12-121 8-109 (329)
204 PF01210 NAD_Gly3P_dh_N: NAD-d 67.8 5.7 0.00012 27.2 2.6 133 12-157 6-140 (157)
205 cd03466 Nitrogenase_NifN_2 Nit 67.6 47 0.001 27.3 8.1 81 13-115 308-395 (429)
206 COG0300 DltE Short-chain dehyd 67.4 12 0.00026 28.3 4.3 74 10-94 15-93 (265)
207 PRK05647 purN phosphoribosylgl 67.3 45 0.00097 24.1 7.3 80 11-96 9-91 (200)
208 PLN02725 GDP-4-keto-6-deoxyman 67.2 14 0.0003 28.4 4.9 26 10-35 3-28 (306)
209 PRK08177 short chain dehydroge 67.1 18 0.0004 26.3 5.3 28 11-38 8-35 (225)
210 TIGR00696 wecB_tagA_cpsF bacte 66.7 43 0.00092 23.7 9.1 106 7-122 28-137 (177)
211 PF02254 TrkA_N: TrkA-N domain 66.6 30 0.00066 21.9 7.3 92 12-119 5-98 (116)
212 PF04230 PS_pyruv_trans: Polys 66.4 51 0.0011 24.5 11.3 68 102-174 91-158 (286)
213 PF01975 SurE: Survival protei 66.4 7.9 0.00017 27.8 3.1 24 16-39 15-38 (196)
214 PRK09271 flavodoxin; Provision 66.0 41 0.00088 23.2 7.2 31 6-36 7-37 (160)
215 TIGR01286 nifK nitrogenase mol 65.9 17 0.00038 30.6 5.4 90 12-114 370-459 (515)
216 PRK14089 ipid-A-disaccharide s 65.1 9 0.00019 30.3 3.4 76 84-174 75-153 (347)
217 PF02142 MGS: MGS-like domain 64.5 31 0.00067 21.2 5.3 88 17-114 2-94 (95)
218 cd01974 Nitrogenase_MoFe_beta 63.6 64 0.0014 26.6 8.2 80 13-114 311-399 (435)
219 COG0458 CarB Carbamoylphosphat 63.4 80 0.0017 25.6 9.5 87 17-120 18-110 (400)
220 cd03805 GT1_ALG2_like This fam 63.0 4 8.7E-05 32.6 1.3 41 190-231 352-392 (392)
221 COG1089 Gmd GDP-D-mannose dehy 63.0 20 0.00042 27.6 4.6 69 18-91 16-84 (345)
222 PF04321 RmlD_sub_bind: RmlD s 63.0 51 0.0011 25.3 7.2 53 10-92 6-58 (286)
223 TIGR01142 purT phosphoribosylg 62.8 79 0.0017 25.3 8.6 62 15-93 9-70 (380)
224 PF10087 DUF2325: Uncharacteri 62.4 35 0.00075 21.1 8.0 76 10-117 5-82 (97)
225 PRK08462 biotin carboxylase; V 61.7 48 0.001 27.3 7.2 71 15-93 14-84 (445)
226 PRK09496 trkA potassium transp 61.3 40 0.00087 27.7 6.8 26 12-37 238-263 (453)
227 PRK01372 ddl D-alanine--D-alan 61.1 60 0.0013 25.0 7.4 32 6-37 14-45 (304)
228 PRK03094 hypothetical protein; 60.9 5.5 0.00012 23.7 1.2 25 12-36 5-29 (80)
229 cd01424 MGS_CPS_II Methylglyox 60.9 40 0.00087 21.4 6.9 87 15-117 13-102 (110)
230 PF04464 Glyphos_transf: CDP-G 60.4 22 0.00047 28.3 5.0 82 85-171 78-164 (369)
231 COG2085 Predicted dinucleotide 60.3 10 0.00023 27.4 2.7 90 10-120 6-95 (211)
232 TIGR02853 spore_dpaA dipicolin 59.2 81 0.0017 24.3 7.6 27 10-37 7-33 (287)
233 PRK10669 putative cation:proto 59.1 1.2E+02 0.0025 26.1 10.2 122 11-160 423-547 (558)
234 PF09318 DUF1975: Domain of un 58.9 17 0.00036 26.1 3.7 39 2-40 5-43 (203)
235 TIGR01283 nifE nitrogenase mol 58.4 59 0.0013 27.0 7.2 81 15-117 336-420 (456)
236 PLN02735 carbamoyl-phosphate s 58.3 1.7E+02 0.0037 27.8 10.7 63 15-93 595-657 (1102)
237 cd01965 Nitrogenase_MoFe_beta_ 57.2 27 0.0006 28.6 5.1 89 12-115 306-394 (428)
238 PRK08591 acetyl-CoA carboxylas 57.0 91 0.002 25.8 8.1 69 16-93 13-82 (451)
239 PRK06988 putative formyltransf 56.7 91 0.002 24.4 7.6 71 12-95 9-87 (312)
240 PRK13235 nifH nitrogenase redu 56.5 13 0.00029 28.1 3.1 29 9-37 8-38 (274)
241 PLN02735 carbamoyl-phosphate s 56.5 1.1E+02 0.0023 29.0 9.0 60 17-92 46-105 (1102)
242 TIGR00460 fmt methionyl-tRNA f 56.2 94 0.002 24.3 7.6 72 12-96 7-89 (313)
243 TIGR00514 accC acetyl-CoA carb 56.0 1.2E+02 0.0025 25.2 8.5 71 15-93 12-82 (449)
244 PF00538 Linker_histone: linke 56.0 13 0.00028 21.9 2.3 50 192-241 5-58 (77)
245 PRK00994 F420-dependent methyl 55.9 68 0.0015 23.9 6.1 81 12-120 14-97 (277)
246 PRK05294 carB carbamoyl phosph 55.9 1.7E+02 0.0036 27.7 10.1 82 16-115 576-658 (1066)
247 COG4635 HemG Flavodoxin [Energ 55.8 19 0.00042 24.8 3.3 32 6-37 7-38 (175)
248 PF04127 DFP: DNA / pantothena 55.8 17 0.00036 25.9 3.2 25 13-37 28-52 (185)
249 TIGR00421 ubiX_pad polyprenyl 55.6 25 0.00054 24.9 4.0 28 11-38 8-36 (181)
250 CHL00194 ycf39 Ycf39; Provisio 55.5 16 0.00034 28.4 3.4 28 10-37 6-33 (317)
251 PRK13982 bifunctional SbtC-lik 55.4 76 0.0016 26.6 7.1 25 13-37 281-305 (475)
252 KOG0780|consensus 55.1 13 0.00029 29.8 2.7 29 10-38 111-139 (483)
253 PF13450 NAD_binding_8: NAD(P) 54.8 22 0.00048 20.3 3.1 21 17-37 8-28 (68)
254 COG0438 RfaG Glycosyltransfera 54.7 14 0.00031 28.3 3.0 50 190-240 330-379 (381)
255 TIGR01369 CPSaseII_lrg carbamo 54.2 1.1E+02 0.0025 28.7 8.8 60 17-92 29-88 (1050)
256 PRK08309 short chain dehydroge 53.7 23 0.0005 24.9 3.6 27 10-37 6-32 (177)
257 PRK13230 nitrogenase reductase 53.7 14 0.00031 28.1 2.8 29 9-37 8-38 (279)
258 KOG0025|consensus 53.5 1.1E+02 0.0023 23.9 8.0 75 73-154 148-222 (354)
259 PRK00207 sulfur transfer compl 53.4 29 0.00063 22.9 3.9 31 7-37 10-41 (128)
260 PHA01633 putative glycosyl tra 53.3 19 0.0004 28.5 3.4 40 190-232 295-334 (335)
261 PRK14494 putative molybdopteri 53.1 75 0.0016 23.6 6.3 27 10-36 11-37 (229)
262 PF02310 B12-binding: B12 bind 52.9 59 0.0013 20.8 8.0 20 17-36 17-36 (121)
263 COG1763 MobB Molybdopterin-gua 52.6 76 0.0017 22.0 6.2 31 8-38 10-40 (161)
264 PF02571 CbiJ: Precorrin-6x re 52.5 99 0.0021 23.3 9.3 97 11-122 7-105 (249)
265 PRK06718 precorrin-2 dehydroge 52.5 17 0.00038 26.2 2.9 25 13-37 18-42 (202)
266 COG2804 PulE Type II secretory 52.5 1.4E+02 0.0031 25.1 10.4 45 76-120 318-362 (500)
267 PRK12815 carB carbamoyl phosph 52.2 1.3E+02 0.0028 28.4 8.8 60 17-92 30-89 (1068)
268 TIGR02094 more_P_ylases alpha- 52.0 35 0.00076 29.5 5.0 47 190-236 544-599 (601)
269 PF03698 UPF0180: Uncharacteri 51.9 8.8 0.00019 22.9 1.1 26 12-37 5-30 (80)
270 TIGR01915 npdG NADPH-dependent 51.5 21 0.00045 26.1 3.3 28 10-37 6-33 (219)
271 PLN02662 cinnamyl-alcohol dehy 51.5 27 0.00058 27.1 4.1 28 10-37 10-37 (322)
272 PHA00452 T3/T7-like RNA polyme 50.9 2E+02 0.0042 26.2 10.3 106 12-123 637-744 (807)
273 cd01425 RPS2 Ribosomal protein 50.6 75 0.0016 22.8 5.9 35 83-119 125-159 (193)
274 KOG3076|consensus 50.6 58 0.0012 23.3 4.9 100 11-120 14-118 (206)
275 PRK13011 formyltetrahydrofolat 50.6 1.2E+02 0.0025 23.5 7.5 98 11-120 97-196 (286)
276 TIGR02852 spore_dpaB dipicolin 50.5 31 0.00067 24.6 3.8 28 11-38 9-38 (187)
277 COG4007 Predicted dehydrogenas 50.0 22 0.00048 26.7 3.1 26 8-38 29-54 (340)
278 PRK11519 tyrosine kinase; Prov 50.0 1.4E+02 0.003 26.7 8.4 26 12-37 539-564 (719)
279 COG1819 Glycosyl transferases, 49.9 1.1E+02 0.0023 25.1 7.3 71 102-175 257-331 (406)
280 PRK14478 nitrogenase molybdenu 49.9 50 0.0011 27.6 5.5 79 15-115 334-416 (475)
281 smart00526 H15 Domain in histo 49.6 47 0.001 18.7 6.2 34 192-225 7-40 (66)
282 PRK05294 carB carbamoyl phosph 49.6 1.6E+02 0.0034 27.8 9.0 59 18-92 31-89 (1066)
283 PRK00005 fmt methionyl-tRNA fo 49.5 1.1E+02 0.0024 23.9 7.1 71 12-95 7-88 (309)
284 PF03807 F420_oxidored: NADP o 49.4 29 0.00063 21.1 3.3 26 12-37 6-34 (96)
285 COG1663 LpxK Tetraacyldisaccha 49.3 96 0.0021 24.5 6.5 29 12-40 61-89 (336)
286 PRK07308 flavodoxin; Validated 49.2 28 0.00061 23.4 3.4 32 6-37 8-39 (146)
287 COG2910 Putative NADH-flavin r 49.2 23 0.00051 25.2 2.9 28 11-38 7-34 (211)
288 TIGR03012 sulf_tusD_dsrE sulfu 49.1 40 0.00087 22.2 4.0 31 7-37 9-40 (127)
289 PF03446 NAD_binding_2: NAD bi 48.8 23 0.00051 24.4 3.0 26 12-37 8-33 (163)
290 PRK06756 flavodoxin; Provision 48.3 32 0.00069 23.2 3.6 32 6-37 8-39 (148)
291 TIGR00877 purD phosphoribosyla 48.2 1.5E+02 0.0033 24.2 9.0 81 17-114 12-92 (423)
292 cd03804 GT1_wbaZ_like This fam 48.1 1.1E+02 0.0023 24.0 7.0 37 190-231 314-350 (351)
293 COG4567 Response regulator con 48.1 90 0.002 21.6 6.1 24 14-37 19-42 (182)
294 PF04244 DPRP: Deoxyribodipyri 48.1 1.1E+02 0.0024 22.6 7.1 76 16-119 50-126 (224)
295 PF13614 AAA_31: AAA domain; P 48.0 42 0.00091 22.6 4.2 29 10-38 11-39 (157)
296 PRK06027 purU formyltetrahydro 47.8 94 0.002 24.0 6.3 97 12-120 98-196 (286)
297 PF02951 GSH-S_N: Prokaryotic 47.7 32 0.00068 22.5 3.2 22 16-37 19-40 (119)
298 TIGR03649 ergot_EASG ergot alk 47.6 22 0.00049 27.0 3.1 29 10-38 5-33 (285)
299 PRK09072 short chain dehydroge 47.5 26 0.00055 26.2 3.3 28 10-37 11-38 (263)
300 PRK08105 flavodoxin; Provision 47.5 28 0.00061 23.7 3.2 32 6-37 8-39 (149)
301 PRK05568 flavodoxin; Provision 47.4 37 0.00081 22.6 3.8 32 6-37 8-39 (142)
302 PRK05234 mgsA methylglyoxal sy 47.3 88 0.0019 21.2 7.0 90 15-119 17-115 (142)
303 PRK13849 putative crown gall t 47.2 27 0.00059 25.8 3.3 31 9-39 9-41 (231)
304 cd01422 MGS Methylglyoxal synt 47.2 76 0.0017 20.5 6.3 88 16-118 13-109 (115)
305 COG2086 FixA Electron transfer 46.7 67 0.0015 24.4 5.2 105 12-120 37-148 (260)
306 cd01968 Nitrogenase_NifE_I Nit 46.4 64 0.0014 26.3 5.6 78 16-115 298-379 (410)
307 COG0451 WcaG Nucleoside-diphos 46.1 28 0.00061 26.7 3.5 29 10-38 6-34 (314)
308 TIGR01777 yfcH conserved hypot 45.8 33 0.00071 26.0 3.7 29 10-38 4-32 (292)
309 PRK06703 flavodoxin; Provision 45.7 34 0.00074 23.2 3.4 32 6-37 8-39 (151)
310 TIGR03172 probable selenium-de 45.4 41 0.00089 25.0 3.9 29 10-38 7-35 (232)
311 PRK10217 dTDP-glucose 4,6-dehy 45.4 95 0.0021 24.5 6.4 27 10-36 7-33 (355)
312 TIGR02700 flavo_MJ0208 archaeo 45.3 37 0.00079 25.2 3.7 27 12-38 11-39 (234)
313 COG0299 PurN Folate-dependent 45.2 73 0.0016 22.9 4.9 100 11-120 8-110 (200)
314 COG5561 Predicted metal-bindin 45.2 71 0.0015 19.5 4.5 43 77-119 48-99 (101)
315 PF06032 DUF917: Protein of un 44.9 52 0.0011 26.3 4.7 98 10-114 20-120 (353)
316 TIGR01753 flav_short flavodoxi 44.9 40 0.00086 22.2 3.6 32 6-37 5-36 (140)
317 TIGR01179 galE UDP-glucose-4-e 44.9 91 0.002 24.0 6.1 26 10-35 5-30 (328)
318 PRK13010 purU formyltetrahydro 44.7 1.1E+02 0.0025 23.6 6.3 79 12-98 102-182 (289)
319 COG1819 Glycosyl transferases, 44.3 26 0.00056 28.6 3.0 23 15-37 16-38 (406)
320 KOG3339|consensus 44.0 89 0.0019 22.3 5.0 87 10-96 47-143 (211)
321 PRK09004 FMN-binding protein M 44.0 35 0.00077 23.1 3.2 31 6-36 8-38 (146)
322 TIGR02114 coaB_strep phosphopa 43.9 32 0.0007 25.4 3.3 24 10-36 24-47 (227)
323 PF02441 Flavoprotein: Flavopr 43.7 27 0.00059 23.0 2.6 22 16-37 15-36 (129)
324 PLN02583 cinnamoyl-CoA reducta 43.5 30 0.00064 26.6 3.2 28 10-37 12-39 (297)
325 PRK07231 fabG 3-ketoacyl-(acyl 43.4 31 0.00066 25.4 3.2 28 10-37 11-38 (251)
326 PLN00141 Tic62-NAD(P)-related 43.3 39 0.00085 25.1 3.7 28 10-37 23-50 (251)
327 PRK07577 short chain dehydroge 43.3 33 0.00072 25.0 3.3 29 10-38 9-37 (234)
328 PRK12311 rpsB 30S ribosomal pr 43.3 88 0.0019 24.7 5.5 33 85-119 152-184 (326)
329 PRK07454 short chain dehydroge 43.1 34 0.00073 25.1 3.3 28 10-37 12-39 (241)
330 COG0223 Fmt Methionyl-tRNA for 43.0 59 0.0013 25.3 4.6 116 12-151 8-137 (307)
331 TIGR02400 trehalose_OtsA alpha 43.0 26 0.00057 29.0 2.9 98 135-234 349-453 (456)
332 PRK06138 short chain dehydroge 42.9 31 0.00068 25.4 3.2 28 10-37 11-38 (252)
333 PLN00198 anthocyanidin reducta 42.8 45 0.00098 26.1 4.2 28 10-37 15-42 (338)
334 cd01983 Fer4_NifH The Fer4_Nif 42.7 53 0.0011 19.5 3.8 25 11-35 10-34 (99)
335 PF09001 DUF1890: Domain of un 42.7 61 0.0013 21.7 3.9 25 13-37 12-36 (139)
336 COG4088 Predicted nucleotide k 42.3 26 0.00055 25.6 2.3 27 11-37 12-38 (261)
337 PRK06101 short chain dehydroge 42.1 35 0.00076 25.1 3.3 27 11-37 8-34 (240)
338 PRK07102 short chain dehydroge 42.1 35 0.00075 25.1 3.3 28 10-37 7-34 (243)
339 PRK05569 flavodoxin; Provision 42.0 48 0.001 22.0 3.7 30 8-37 10-39 (141)
340 PF08821 CGGC: CGGC domain; I 42.0 92 0.002 19.9 5.2 42 77-118 57-107 (107)
341 PRK05920 aromatic acid decarbo 42.0 44 0.00096 24.2 3.6 24 15-38 17-40 (204)
342 PF02719 Polysacc_synt_2: Poly 42.0 26 0.00056 27.0 2.5 74 10-92 4-85 (293)
343 PRK14619 NAD(P)H-dependent gly 42.0 46 0.001 25.8 4.0 27 12-38 11-37 (308)
344 cd01980 Chlide_reductase_Y Chl 41.4 47 0.001 27.2 4.1 77 17-115 292-373 (416)
345 PLN02695 GDP-D-mannose-3',5'-e 41.3 34 0.00075 27.3 3.3 28 10-37 27-54 (370)
346 cd03788 GT1_TPS Trehalose-6-Ph 41.1 33 0.00073 28.4 3.3 43 190-233 415-457 (460)
347 TIGR01007 eps_fam capsular exo 40.9 46 0.001 23.8 3.7 26 12-37 30-55 (204)
348 PRK06732 phosphopantothenate-- 40.8 49 0.0011 24.5 3.8 23 15-37 27-49 (229)
349 PRK06924 short chain dehydroge 40.5 39 0.00084 25.0 3.3 28 10-37 7-34 (251)
350 PRK10538 malonic semialdehyde 40.5 39 0.00085 25.0 3.4 28 10-37 6-33 (248)
351 TIGR00750 lao LAO/AO transport 40.5 1.7E+02 0.0038 22.7 8.1 81 10-95 44-136 (300)
352 PRK06179 short chain dehydroge 40.5 37 0.0008 25.5 3.3 28 10-37 10-37 (270)
353 COG3660 Predicted nucleoside-d 40.2 1.7E+02 0.0037 22.5 6.7 36 83-120 68-103 (329)
354 PRK06111 acetyl-CoA carboxylas 40.0 1.8E+02 0.0039 24.0 7.4 69 16-92 13-81 (450)
355 TIGR01724 hmd_rel H2-forming N 40.0 40 0.00088 26.5 3.3 17 20-36 35-51 (341)
356 PLN02214 cinnamoyl-CoA reducta 39.6 42 0.00091 26.5 3.5 28 10-37 16-43 (342)
357 TIGR03376 glycerol3P_DH glycer 39.6 2E+02 0.0042 23.0 9.7 26 12-37 6-39 (342)
358 PRK07666 fabG 3-ketoacyl-(acyl 39.5 41 0.00089 24.6 3.3 28 10-37 13-40 (239)
359 PLN02989 cinnamyl-alcohol dehy 39.4 47 0.001 25.8 3.8 28 10-37 11-38 (325)
360 PRK03659 glutathione-regulated 39.2 1.7E+02 0.0037 25.5 7.2 28 10-37 405-432 (601)
361 TIGR02538 type_IV_pilB type IV 39.2 2.6E+02 0.0055 24.2 10.4 45 76-120 376-420 (564)
362 PRK10436 hypothetical protein; 39.1 2.3E+02 0.0051 23.7 10.1 44 77-120 279-322 (462)
363 PRK03692 putative UDP-N-acetyl 39.0 1.7E+02 0.0036 22.0 9.2 105 7-121 85-193 (243)
364 PLN02650 dihydroflavonol-4-red 38.9 50 0.0011 26.1 3.9 28 10-37 11-38 (351)
365 PRK08463 acetyl-CoA carboxylas 38.9 2.2E+02 0.0048 23.9 7.7 69 16-93 13-81 (478)
366 COG0702 Predicted nucleoside-d 38.8 33 0.00072 25.7 2.8 30 10-39 6-35 (275)
367 PRK05557 fabG 3-ketoacyl-(acyl 38.8 43 0.00093 24.5 3.3 28 10-37 11-38 (248)
368 PRK06914 short chain dehydroge 38.7 42 0.00091 25.3 3.3 28 10-37 9-36 (280)
369 COG1192 Soj ATPases involved i 38.6 42 0.00092 25.1 3.3 30 9-38 10-42 (259)
370 PRK05653 fabG 3-ketoacyl-(acyl 38.6 42 0.00092 24.5 3.3 28 10-37 11-38 (246)
371 TIGR02193 heptsyl_trn_I lipopo 38.6 1.1E+02 0.0023 23.9 5.6 77 15-93 14-93 (319)
372 TIGR01754 flav_RNR ribonucleot 38.6 50 0.0011 22.0 3.3 28 6-33 7-34 (140)
373 cd02036 MinD Bacterial cell di 38.5 56 0.0012 22.6 3.7 26 12-37 12-37 (179)
374 smart00040 CSF2 Granulocyte-ma 38.3 1E+02 0.0022 19.6 4.1 52 190-241 13-68 (121)
375 PF00982 Glyco_transf_20: Glyc 38.3 83 0.0018 26.4 5.0 94 85-181 141-254 (474)
376 PRK09135 pteridine reductase; 38.0 43 0.00092 24.6 3.2 28 10-37 12-39 (249)
377 COG0716 FldA Flavodoxins [Ener 38.0 43 0.00093 22.7 3.0 33 5-37 7-39 (151)
378 PRK12829 short chain dehydroge 37.9 38 0.00082 25.2 3.0 28 10-37 17-44 (264)
379 TIGR00655 PurU formyltetrahydr 37.8 1.9E+02 0.0041 22.3 7.3 80 11-98 92-173 (280)
380 PLN02686 cinnamoyl-CoA reducta 37.7 53 0.0011 26.3 3.8 28 10-37 59-86 (367)
381 PRK08125 bifunctional UDP-gluc 37.6 2E+02 0.0043 25.4 7.5 70 13-96 8-86 (660)
382 TIGR01969 minD_arch cell divis 37.5 53 0.0012 24.3 3.7 28 10-37 9-38 (251)
383 PF02558 ApbA: Ketopantoate re 37.4 48 0.001 22.3 3.2 22 17-38 10-31 (151)
384 cd01124 KaiC KaiC is a circadi 37.3 1.4E+02 0.0031 20.7 10.0 135 10-151 9-165 (187)
385 PLN02986 cinnamyl-alcohol dehy 37.3 48 0.001 25.7 3.5 28 10-37 11-38 (322)
386 PRK12429 3-hydroxybutyrate deh 37.2 46 0.001 24.6 3.3 28 10-37 10-37 (258)
387 cd02037 MRP-like MRP (Multiple 37.2 52 0.0011 22.7 3.3 27 12-38 12-38 (169)
388 PRK13705 plasmid-partitioning 37.2 44 0.00096 27.0 3.3 27 9-35 114-142 (388)
389 TIGR01656 Histidinol-ppas hist 37.1 1.3E+02 0.0028 20.2 6.6 22 17-38 32-53 (147)
390 TIGR02113 coaC_strep phosphopa 37.0 59 0.0013 23.0 3.5 23 15-37 14-36 (177)
391 PRK10126 tyrosine phosphatase; 37.0 55 0.0012 22.2 3.3 36 136-171 70-105 (147)
392 PRK07523 gluconate 5-dehydroge 37.0 48 0.001 24.6 3.4 28 10-37 16-43 (255)
393 PRK06180 short chain dehydroge 36.9 45 0.00097 25.2 3.2 28 10-37 10-37 (277)
394 PF07015 VirC1: VirC1 protein; 36.9 70 0.0015 23.8 4.0 31 9-39 9-41 (231)
395 PRK07326 short chain dehydroge 36.9 41 0.00088 24.5 2.9 28 10-37 12-39 (237)
396 PRK08993 2-deoxy-D-gluconate 3 36.7 1E+02 0.0022 22.9 5.0 27 10-36 16-42 (253)
397 PF03205 MobB: Molybdopterin g 36.7 85 0.0018 21.1 4.2 30 8-37 8-37 (140)
398 COG1647 Esterase/lipase [Gener 36.7 1.8E+02 0.0039 21.7 6.4 92 11-120 25-117 (243)
399 PRK01222 N-(5'-phosphoribosyl) 36.6 1.3E+02 0.0027 22.0 5.3 68 74-150 66-133 (210)
400 PRK12825 fabG 3-ketoacyl-(acyl 36.4 48 0.001 24.3 3.3 28 10-37 12-39 (249)
401 PF01656 CbiA: CobQ/CobB/MinD/ 36.4 61 0.0013 22.7 3.7 28 12-39 11-38 (195)
402 PRK07856 short chain dehydroge 36.3 49 0.0011 24.5 3.3 28 10-37 12-39 (252)
403 PF10093 DUF2331: Uncharacteri 36.3 60 0.0013 26.1 3.8 48 11-59 12-69 (374)
404 cd00115 LMWPc Substituted upda 36.3 1.3E+02 0.0028 20.0 5.9 34 138-171 73-106 (141)
405 PRK07041 short chain dehydroge 36.3 49 0.0011 24.0 3.3 27 11-37 4-30 (230)
406 PLN02572 UDP-sulfoquinovose sy 36.2 41 0.00088 27.8 3.0 26 10-35 53-78 (442)
407 PRK11391 etp phosphotyrosine-p 36.1 1.3E+02 0.0029 20.3 5.0 35 137-171 71-105 (144)
408 PRK12833 acetyl-CoA carboxylas 36.1 2.3E+02 0.005 23.7 7.4 70 14-92 14-84 (467)
409 TIGR03466 HpnA hopanoid-associ 36.1 46 0.00099 25.8 3.2 28 10-37 6-33 (328)
410 PRK05993 short chain dehydroge 36.0 51 0.0011 24.9 3.4 28 10-37 10-37 (277)
411 PRK08226 short chain dehydroge 36.0 46 0.00099 24.8 3.1 28 10-37 12-39 (263)
412 PF09140 MipZ: ATPase MipZ; I 36.0 53 0.0011 24.8 3.2 29 10-38 9-39 (261)
413 PRK06194 hypothetical protein; 36.0 53 0.0011 24.9 3.5 28 10-37 12-39 (287)
414 COG0788 PurU Formyltetrahydrof 36.0 1.3E+02 0.0029 22.9 5.2 109 48-172 136-245 (287)
415 TIGR01963 PHB_DH 3-hydroxybuty 35.8 50 0.0011 24.4 3.3 27 11-37 8-34 (255)
416 PF03853 YjeF_N: YjeF-related 35.8 1.1E+02 0.0023 21.4 4.7 23 15-37 39-61 (169)
417 PRK07023 short chain dehydroge 35.6 44 0.00095 24.6 3.0 28 10-37 7-34 (243)
418 PRK12745 3-ketoacyl-(acyl-carr 35.6 51 0.0011 24.4 3.3 28 10-37 8-35 (256)
419 PF02737 3HCDH_N: 3-hydroxyacy 35.5 55 0.0012 23.1 3.3 26 12-37 6-31 (180)
420 PF05908 DUF867: Protein of un 35.3 12 0.00025 26.8 -0.2 28 7-34 33-61 (194)
421 PRK14477 bifunctional nitrogen 35.2 1.5E+02 0.0033 27.4 6.6 80 16-117 331-414 (917)
422 PLN02657 3,8-divinyl protochlo 35.1 53 0.0012 26.6 3.5 29 10-38 66-94 (390)
423 PRK10675 UDP-galactose-4-epime 35.0 46 0.00099 26.0 3.1 27 10-36 6-32 (338)
424 cd00073 H15 linker histone 1 a 34.9 1.1E+02 0.0023 18.6 5.3 49 192-240 7-57 (88)
425 TIGR01917 gly_red_sel_B glycin 34.9 2.5E+02 0.0054 23.2 6.9 76 3-115 305-386 (431)
426 cd02040 NifH NifH gene encodes 34.9 64 0.0014 24.3 3.8 28 10-37 9-38 (270)
427 COG1023 Gnd Predicted 6-phosph 34.8 51 0.0011 24.7 3.0 26 12-37 7-32 (300)
428 KOG1429|consensus 34.8 54 0.0012 25.3 3.1 28 10-37 33-60 (350)
429 PRK08703 short chain dehydroge 34.7 46 0.001 24.4 2.9 28 10-37 12-39 (239)
430 TIGR02026 BchE magnesium-proto 34.7 2.8E+02 0.0062 23.4 8.1 20 17-36 25-45 (497)
431 cd02117 NifH_like This family 34.7 64 0.0014 23.4 3.6 28 10-37 8-37 (212)
432 TIGR00176 mobB molybdopterin-g 34.6 94 0.002 21.3 4.2 29 9-37 8-36 (155)
433 TIGR01830 3oxo_ACP_reduc 3-oxo 34.5 56 0.0012 23.8 3.4 27 11-37 5-31 (239)
434 PRK14476 nitrogenase molybdenu 34.4 2.8E+02 0.006 23.2 7.5 75 14-115 320-394 (455)
435 TIGR03264 met_CoM_red_C methyl 34.4 1.7E+02 0.0037 20.7 8.4 48 74-121 92-139 (194)
436 cd01985 ETF The electron trans 34.3 1.6E+02 0.0036 20.6 6.9 101 15-120 22-125 (181)
437 PRK12826 3-ketoacyl-(acyl-carr 34.2 51 0.0011 24.2 3.1 28 10-37 12-39 (251)
438 TIGR01832 kduD 2-deoxy-D-gluco 34.1 53 0.0011 24.2 3.2 28 10-37 11-38 (248)
439 PRK12557 H(2)-dependent methyl 34.0 59 0.0013 25.8 3.5 25 8-37 28-52 (342)
440 PF02603 Hpr_kinase_N: HPr Ser 33.7 1.3E+02 0.0028 19.8 4.6 42 76-119 73-114 (127)
441 TIGR01287 nifH nitrogenase iro 33.7 68 0.0015 24.3 3.8 28 10-37 8-37 (275)
442 PF02374 ArsA_ATPase: Anion-tr 33.6 57 0.0012 25.4 3.3 31 9-39 8-40 (305)
443 PRK08267 short chain dehydroge 33.6 57 0.0012 24.3 3.3 28 10-37 7-34 (260)
444 TIGR01472 gmd GDP-mannose 4,6- 33.6 47 0.001 26.1 3.0 27 11-37 7-33 (343)
445 PRK07067 sorbitol dehydrogenas 33.6 54 0.0012 24.3 3.2 28 10-37 12-39 (257)
446 TIGR01281 DPOR_bchL light-inde 33.6 67 0.0015 24.2 3.7 29 9-37 7-37 (268)
447 PRK06935 2-deoxy-D-gluconate 3 33.4 59 0.0013 24.2 3.4 28 10-37 21-48 (258)
448 PLN02166 dTDP-glucose 4,6-dehy 33.4 51 0.0011 27.2 3.2 27 10-36 126-152 (436)
449 PRK06550 fabG 3-ketoacyl-(acyl 33.4 57 0.0012 23.8 3.2 28 10-37 11-38 (235)
450 PRK07774 short chain dehydroge 33.3 62 0.0013 23.8 3.4 28 10-37 12-39 (250)
451 PRK07890 short chain dehydroge 33.3 50 0.0011 24.5 3.0 28 10-37 11-38 (258)
452 PRK12827 short chain dehydroge 33.2 49 0.0011 24.3 2.9 27 10-36 12-38 (249)
453 KOG1371|consensus 33.2 40 0.00087 26.4 2.3 27 10-36 8-34 (343)
454 PRK05866 short chain dehydroge 33.2 60 0.0013 24.9 3.4 28 10-37 46-73 (293)
455 PLN02896 cinnamyl-alcohol dehy 33.1 58 0.0013 25.7 3.4 28 10-37 16-43 (353)
456 KOG1014|consensus 33.1 43 0.00093 26.0 2.5 23 17-39 62-84 (312)
457 PHA02518 ParA-like protein; Pr 33.0 75 0.0016 22.7 3.7 29 10-38 9-39 (211)
458 cd03114 ArgK-like The function 32.9 1.6E+02 0.0034 20.0 10.9 28 10-37 9-36 (148)
459 PRK08265 short chain dehydroge 32.9 58 0.0013 24.3 3.2 28 10-37 12-39 (261)
460 PRK07069 short chain dehydroge 32.9 57 0.0012 24.0 3.2 27 11-37 6-32 (251)
461 TIGR02015 BchY chlorophyllide 32.8 1.3E+02 0.0028 24.9 5.3 82 17-115 297-378 (422)
462 PF05728 UPF0227: Uncharacteri 32.8 1.9E+02 0.004 20.7 7.3 72 16-117 16-88 (187)
463 PRK06057 short chain dehydroge 32.7 61 0.0013 24.0 3.3 28 10-37 13-40 (255)
464 PF14894 Lsm_C: Lsm C-terminal 32.7 54 0.0012 18.6 2.2 16 227-242 47-62 (64)
465 PLN02240 UDP-glucose 4-epimera 32.7 50 0.0011 26.0 3.0 27 10-36 11-37 (352)
466 PF01738 DLH: Dienelactone hyd 32.6 66 0.0014 23.3 3.4 29 8-36 21-49 (218)
467 PRK09987 dTDP-4-dehydrorhamnos 32.5 1.2E+02 0.0027 23.3 5.1 25 10-35 6-30 (299)
468 cd00127 DSPc Dual specificity 32.5 1.5E+02 0.0032 19.4 7.1 82 10-95 11-92 (139)
469 COG4081 Uncharacterized protei 32.4 72 0.0016 21.1 3.0 23 15-37 19-41 (148)
470 PRK06182 short chain dehydroge 32.4 58 0.0013 24.5 3.2 27 11-37 10-36 (273)
471 TIGR01428 HAD_type_II 2-haloal 32.4 1.4E+02 0.003 21.1 5.0 21 18-38 98-118 (198)
472 PRK08945 putative oxoacyl-(acy 32.4 57 0.0012 24.0 3.1 28 10-37 18-45 (247)
473 PRK05579 bifunctional phosphop 32.3 59 0.0013 26.5 3.3 25 13-37 213-237 (399)
474 PRK12937 short chain dehydroge 32.3 58 0.0013 23.8 3.2 28 10-37 11-38 (245)
475 COG1091 RfbD dTDP-4-dehydrorha 32.3 1.1E+02 0.0024 23.6 4.5 80 10-120 6-102 (281)
476 PRK06398 aldose dehydrogenase; 32.3 67 0.0014 24.0 3.5 28 10-37 12-39 (258)
477 PRK13185 chlL protochlorophyll 32.3 72 0.0016 24.1 3.7 29 9-37 9-39 (270)
478 PRK10037 cell division protein 32.2 70 0.0015 23.9 3.6 29 9-37 9-39 (250)
479 PRK06522 2-dehydropantoate 2-r 32.2 55 0.0012 25.1 3.1 26 12-37 7-32 (304)
480 PRK05875 short chain dehydroge 32.2 63 0.0014 24.3 3.4 28 10-37 13-40 (276)
481 KOG2803|consensus 32.1 57 0.0012 25.4 2.9 19 102-120 27-45 (358)
482 PF05991 NYN_YacP: YacP-like N 32.1 86 0.0019 21.8 3.7 32 6-37 72-103 (166)
483 PRK07814 short chain dehydroge 32.0 60 0.0013 24.3 3.2 28 10-37 16-43 (263)
484 PRK07313 phosphopantothenoylcy 32.0 82 0.0018 22.4 3.6 24 15-38 15-38 (182)
485 PRK08213 gluconate 5-dehydroge 32.0 64 0.0014 24.0 3.4 28 10-37 18-45 (259)
486 PRK09186 flagellin modificatio 32.0 61 0.0013 24.0 3.2 28 10-37 10-37 (256)
487 PRK08017 oxidoreductase; Provi 31.9 63 0.0014 23.9 3.3 27 11-37 9-35 (256)
488 PRK11199 tyrA bifunctional cho 31.9 42 0.00091 27.0 2.4 28 10-37 104-131 (374)
489 PRK07063 short chain dehydroge 31.8 63 0.0014 24.0 3.3 28 10-37 13-40 (260)
490 PRK06841 short chain dehydroge 31.8 61 0.0013 24.0 3.2 28 10-37 21-48 (255)
491 PRK15181 Vi polysaccharide bio 31.7 60 0.0013 25.6 3.3 28 10-37 21-48 (348)
492 PRK09219 xanthine phosphoribos 31.7 1.5E+02 0.0033 21.2 4.9 41 76-118 41-81 (189)
493 TIGR02622 CDP_4_6_dhtase CDP-g 31.7 65 0.0014 25.4 3.5 28 10-37 10-37 (349)
494 PRK05693 short chain dehydroge 31.7 62 0.0013 24.4 3.3 27 11-37 8-34 (274)
495 cd02042 ParA ParA and ParB of 31.7 92 0.002 19.2 3.6 26 12-37 12-37 (104)
496 PLN02253 xanthoxin dehydrogena 31.5 63 0.0014 24.4 3.3 28 10-37 24-51 (280)
497 PLN03209 translocon at the inn 31.5 58 0.0013 27.9 3.2 28 10-37 86-113 (576)
498 PRK06197 short chain dehydroge 31.4 61 0.0013 25.0 3.2 28 10-37 22-49 (306)
499 PRK06196 oxidoreductase; Provi 31.4 63 0.0014 25.1 3.3 28 10-37 32-59 (315)
500 PRK08264 short chain dehydroge 31.4 61 0.0013 23.7 3.1 28 10-37 12-40 (238)
No 1
>KOG1111|consensus
Probab=100.00 E-value=1.4e-37 Score=226.55 Aligned_cols=247 Identities=57% Similarity=0.941 Sum_probs=225.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
+|+|+|+|..||+|.++.+|++.|.+.||.|.+++..+++..+.+...+|.+++.+|.....+...++..+..++.++.+
T Consensus 5 mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pllr~i 84 (426)
T KOG1111|consen 5 MVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLLRPI 84 (426)
T ss_pred eeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCcccchh
Confidence 68999999999999999999999999999999999998888888888999999999999988888899999999999999
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRA 160 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~ 160 (252)
+.+++..|||.|+.++.+...+.+.++..|.++|+|-|..+++.+..+.+.+++++..+...|++||+|...+++...+.
T Consensus 85 ~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHSlfGfad~~si~~n~ll~~sL~~id~~IcVshtskentvlr~ 164 (426)
T KOG1111|consen 85 LLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHSLFGFADIGSILTNKLLPLSLANIDRIICVSHTSKENTVLRG 164 (426)
T ss_pred hhhhceEEEecCChHHHHHHHHHHHHHhcCceEEEeccccccccchhhhhhcceeeeeecCCCcEEEEeecCCCceEEEe
Confidence 99999999999999998888899999999999999999999999999888888888999999999999999999877777
Q ss_pred ccCCCceEEccCCccCCCCCCCccccccc---------------------------------------------------
Q psy8013 161 RVNHYNVSVIPNAVDTTVFVPDVSRRSHN--------------------------------------------------- 189 (252)
Q Consensus 161 ~~~~~~i~vI~ngvd~~~f~~~~~~~~~~--------------------------------------------------- 189 (252)
.++++++.+|||.++.+.|.|++......
T Consensus 165 ~L~p~kvsvIPnAv~~~~f~P~~~~~~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~ 244 (426)
T KOG1111|consen 165 ALAPAKVSVIPNAVVTHTFTPDAADKPSADIITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEM 244 (426)
T ss_pred ccCHhHeeeccceeeccccccCccccCCCCeeEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHH
Confidence 78899999999999999999965433221
Q ss_pred ------------------------------------------------------------------------------hh
Q psy8013 190 ------------------------------------------------------------------------------ET 191 (252)
Q Consensus 190 ------------------------------------------------------------------------------~~ 191 (252)
++
T Consensus 245 lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d~i~~~~~~~~d 324 (426)
T KOG1111|consen 245 LEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPEDMITLGEPGPDD 324 (426)
T ss_pred HHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecCCccccCCccceeccCCChHH
Confidence 88
Q ss_pred HHHHHHHHHhhccCCCCCChhhhHHHHHhcCChHHHHHHHHHHHHHHhhccccChhhhcC
Q psy8013 192 LIAGIESAISDLKNGRAISPFKCHETVKSLYNWVDVSERTEIVYKRVTQEETKSVSEILK 251 (252)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~a~~~~~~y~~~~~~~~~~~~~~~~ 251 (252)
+++++.+++.++.. .+...++++++.|+|+++|++++++|.++..++..+..++++
T Consensus 325 l~~~v~~ai~~~~~----~p~~~h~~v~~~y~w~dVa~rTekvy~r~~~t~~~~~~~r~~ 380 (426)
T KOG1111|consen 325 LVGAVEKAITKLRT----LPLEFHDRVKKMYSWKDVAERTEKVYDRAATTSIRNEQDRLK 380 (426)
T ss_pred HHHHHHHHHHHhcc----CchhHHHHHHHhccHHHHHHHHHHHHHHHhhccCcCHHHHHH
Confidence 99999999998876 477899999999999999999999999999998888877765
No 2
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.2e-32 Score=217.82 Aligned_cols=249 Identities=61% Similarity=1.011 Sum_probs=186.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
+++++|+|..||+++++.+|+++|.++||+|+|+++..+..........++.++++|.............+.....+.+.
T Consensus 4 ~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l~~~ 83 (398)
T cd03796 4 MVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLLRNI 83 (398)
T ss_pred EEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHHHHH
Confidence 47899999999999999999999999999999999864433333334578889888865433222223334455677888
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRA 160 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~ 160 (252)
+++.+|||||+|+....+...+.++++..++|+|++.|+.++..........++.++.++++|.++++|+..++.+....
T Consensus 84 ~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 163 (398)
T cd03796 84 LIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKENTVLRA 163 (398)
T ss_pred HHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhhHHHHHh
Confidence 88899999999987665444466778888999999999976544433344455677788899999999999887665566
Q ss_pred ccCCCceEEccCCccCCCCCCCccccccc---------------------------------------------------
Q psy8013 161 RVNHYNVSVIPNAVDTTVFVPDVSRRSHN--------------------------------------------------- 189 (252)
Q Consensus 161 ~~~~~~i~vI~ngvd~~~f~~~~~~~~~~--------------------------------------------------- 189 (252)
+++.+++.+||||+|.+.|.+........
T Consensus 164 ~~~~~k~~vi~ngvd~~~f~~~~~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~ 243 (398)
T cd03796 164 SLDPERVSVIPNAVDSSDFTPDPSKRDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMR 243 (398)
T ss_pred CCChhhEEEEcCccCHHHcCCCcccCCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHH
Confidence 77788999999999998887654321111
Q ss_pred -----------------------------------------------------------------------------hhH
Q psy8013 190 -----------------------------------------------------------------------------ETL 192 (252)
Q Consensus 190 -----------------------------------------------------------------------------~~~ 192 (252)
+++
T Consensus 244 ~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~~~~~~~~~~~l 323 (398)
T cd03796 244 EKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDMILLAEPDVESI 323 (398)
T ss_pred HHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCchhheeCCceeecCCCHHHH
Confidence 456
Q ss_pred HHHHHHHHhhccCCCCCChhhhHHHHHhcCChHHHHHHHHHHHHHHhhccccChhhhc
Q psy8013 193 IAGIESAISDLKNGRAISPFKCHETVKSLYNWVDVSERTEIVYKRVTQEETKSVSEIL 250 (252)
Q Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~a~~~~~~y~~~~~~~~~~~~~~~ 250 (252)
.+++.+++....... .....+++.+.+.|||+.+++++.++|+++++.+...+.++|
T Consensus 324 ~~~l~~~l~~~~~~~-~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~~~~~~~~~~~ 380 (398)
T cd03796 324 VRKLEEAISILRTGK-HDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQTPNLSLLERL 380 (398)
T ss_pred HHHHHHHHhChhhhh-hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCCCcchHHhh
Confidence 667776666443322 345677888999999999999999999999987766665554
No 3
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.95 E-value=1.5e-26 Score=183.96 Aligned_cols=181 Identities=19% Similarity=0.158 Sum_probs=125.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCC-----------cceeeeeCCeEEEEeecccccCCCcccc
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDR-----------VGIRYMTNGLKVYYCPIKTFYNQSILPT 69 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 69 (252)
++++.|+|..||++.++.+|+++|.+.||+|+|+|+....+ ....+..+|+++++++...........+
T Consensus 5 ii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~~~ 84 (412)
T PRK10307 5 VYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPSGLKR 84 (412)
T ss_pred EEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCccHHHH
Confidence 46888999999999999999999999999999999752111 0122346789999987643222111111
Q ss_pred ccc----chHHHHHHHh--hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCC---------CchhhHHHHHH
Q psy8013 70 MVC----SIPLVRHILL--REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGF---------ADSSAIVTNKC 134 (252)
Q Consensus 70 ~~~----~~~~l~~~~~--~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~---------~~~~~~~~~~~ 134 (252)
... ....+..+++ ..+||+||+|.+.......+..+++..++|+|++.|+.++. ......+...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 164 (412)
T PRK10307 85 LLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYEVDAAFGLGLLKGGKVARLATAF 164 (412)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCCHHHHHHhCCccCcHHHHHHHHH
Confidence 111 0111122222 26899999998654333346677888899999999986531 11112233455
Q ss_pred HHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCC
Q psy8013 135 LEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 135 ~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
.+++++.+|.++++|+.+++.+ ...+.+.+++.+||||+|.+.|.+.
T Consensus 165 ~~~~~~~ad~ii~~S~~~~~~~-~~~~~~~~~i~vi~ngvd~~~~~~~ 211 (412)
T PRK10307 165 ERSLLRRFDNVSTISRSMMNKA-REKGVAAEKVIFFPNWSEVARFQPV 211 (412)
T ss_pred HHHHHhhCCEEEecCHHHHHHH-HHcCCCcccEEEECCCcCHhhcCCC
Confidence 7778889999999999999886 4567778899999999999888764
No 4
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.94 E-value=9.8e-27 Score=164.20 Aligned_cols=169 Identities=22% Similarity=0.309 Sum_probs=105.9
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
+++..+.|..||+|+++.+|+++|.++||+|++++....+..... ...................+.....+.+.
T Consensus 2 li~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF13439_consen 2 LITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE------LVKIFVKIPYPIRKRFLRSFFFMRRLRRL 75 (177)
T ss_dssp EEECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST------EEEE---TT-SSTSS--HHHHHHHHHHHH
T ss_pred EEEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh------ccceeeeeecccccccchhHHHHHHHHHH
Confidence 356788899999999999999999999999999998755433221 11111111111111122334455678888
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCC-------CCchhhHHHHHHHHHhhcCCCEEEEechhhh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFG-------FADSSAIVTNKCLEISLAGCNHCICVSHIGK 153 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~-------~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~ 153 (252)
+++.+|||||+|....... +....+ ++|.|++.|+.+. .......+...+.+..++.+|.++|+|+.++
T Consensus 76 i~~~~~DiVh~~~~~~~~~--~~~~~~--~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~ 151 (177)
T PF13439_consen 76 IKKEKPDIVHIHGPPAFWI--ALLACR--KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTK 151 (177)
T ss_dssp HHHHT-SEEECCTTHCCCH--HHHHHH--CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHH
T ss_pred HHHcCCCeEEecccchhHH--HHHhcc--CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHH
Confidence 9999999999998665432 333333 9999999999762 1122223333445566788999999999999
Q ss_pred hhHHHhhccCCCceEEccCCccCCCCC
Q psy8013 154 ENTVLRARVNHYNVSVIPNAVDTTVFV 180 (252)
Q Consensus 154 ~~~~~~~~~~~~~i~vI~ngvd~~~f~ 180 (252)
+.+.. ++++++++.|||||||++.|+
T Consensus 152 ~~l~~-~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 152 DELIK-FGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp HHHHH-HT--SS-EEE----B-CCCH-
T ss_pred HHHHH-hCCcccCCEEEECCccHHHcC
Confidence 99866 999999999999999999884
No 5
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.92 E-value=1.7e-23 Score=168.57 Aligned_cols=173 Identities=16% Similarity=0.116 Sum_probs=116.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhC
Q psy8013 5 FFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLRE 84 (252)
Q Consensus 5 ~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (252)
.++|..||+++++.+++++|.++||+|+|++...... ....++++..............+..+.....+.+.+++.
T Consensus 68 ~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~----~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 143 (465)
T PLN02871 68 SPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP----QEFHGAKVIGSWSFPCPFYQKVPLSLALSPRIISEVARF 143 (465)
T ss_pred cCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC----ccccCceeeccCCcCCccCCCceeeccCCHHHHHHHHhC
Confidence 4456789999999999999999999999999864321 123455554433221111001111222233677888899
Q ss_pred CCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCC----chh--hHHHHHHHHHhhcCCCEEEEechhhhhhHHH
Q psy8013 85 EISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFA----DSS--AIVTNKCLEISLAGCNHCICVSHIGKENTVL 158 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~----~~~--~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~ 158 (252)
+|||||+|.+.. ....+..+++..++|+|++.|+.+... ... ......+.+++++.+|.++++|+..++.+..
T Consensus 144 kpDiIh~~~~~~-~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~ 222 (465)
T PLN02871 144 KPDLIHASSPGI-MVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSPALGKELEA 222 (465)
T ss_pred CCCEEEECCCch-hHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCHHHHHHHHH
Confidence 999999998643 222355667788999999999864321 111 0111233566777899999999999988754
Q ss_pred hhccCCCceEEccCCccCCCCCCC
Q psy8013 159 RARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 159 ~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
....+.+++.+||||||.+.|.+.
T Consensus 223 ~~~~~~~kv~vi~nGvd~~~f~p~ 246 (465)
T PLN02871 223 AGVTAANRIRVWNKGVDSESFHPR 246 (465)
T ss_pred cCCCCcCeEEEeCCccCccccCCc
Confidence 433456899999999999988764
No 6
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.92 E-value=3.5e-24 Score=170.32 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=116.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCc-ceeeeeCCeEEEEeecccccCCCc--ccccc-cc-hHHHHHHHhh-
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRV-GIRYMTNGLKVYYCPIKTFYNQSI--LPTMV-CS-IPLVRHILLR- 83 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~-~~-~~~l~~~~~~- 83 (252)
.||+|+++.+|+++|.++||+|+|+|....... ......+|+++++++......... .+..+ .. ...+..+++.
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 499999999999999999999999998643222 122345789999886543321110 11100 01 1123344443
Q ss_pred -CCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCc--------hhhHHHHHHHHHhhcCCCEEEEechhhhh
Q psy8013 84 -EEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFAD--------SSAIVTNKCLEISLAGCNHCICVSHIGKE 154 (252)
Q Consensus 84 -~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~--------~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 154 (252)
.+|||||+|.+.+.+. +..+++..++|+|+|.|+.+.... ..........+..++.+|.++++|+...+
T Consensus 99 ~~~~Diih~h~~~~~~~--~~~~~~~~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~~ 176 (405)
T TIGR03449 99 PGYYDLIHSHYWLSGQV--GWLLRDRWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEAR 176 (405)
T ss_pred CCCCCeEEechHHHHHH--HHHHHHhcCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHHH
Confidence 4799999998665443 666777889999999998642111 11112223345678889999999999888
Q ss_pred hHHHhhccCCCceEEccCCccCCCCCCC
Q psy8013 155 NTVLRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 155 ~~~~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
.+...++.+.+++.+||||+|.+.|.+.
T Consensus 177 ~~~~~~~~~~~ki~vi~ngvd~~~~~~~ 204 (405)
T TIGR03449 177 DLVRHYDADPDRIDVVAPGADLERFRPG 204 (405)
T ss_pred HHHHHcCCChhhEEEECCCcCHHHcCCC
Confidence 8766778878899999999998877653
No 7
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.92 E-value=6.4e-24 Score=147.32 Aligned_cols=156 Identities=24% Similarity=0.238 Sum_probs=101.5
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHH--hhCCCcE
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHIL--LREEISI 88 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~Dv 88 (252)
||+++++.+|+++|.++||+|+|+++...+.. ......++.++.++...... ..........+.+++ +..+||+
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~Dv 76 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPED-DEEEEDGVRVHRLPLPRRPW---PLRLLRFLRRLRRLLAARRERPDV 76 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG--SEEETTEEEEEE--S-SSS---GGGHCCHHHHHHHHCHHCT---SE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcc-cccccCCceEEeccCCccch---hhhhHHHHHHHHHHHhhhccCCeE
Confidence 89999999999999999999999998754432 23567889999998665432 223345566778888 8889999
Q ss_pred EEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCC--CchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCc
Q psy8013 89 VHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGF--ADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYN 166 (252)
Q Consensus 89 vh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~--~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~ 166 (252)
||+|.+...+. +..+.+..++|+|++.|+.... ......+.+++.++.++.+|.++++|+..++.+.. +++++++
T Consensus 77 v~~~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~-~g~~~~r 153 (160)
T PF13579_consen 77 VHAHSPTAGLV--AALARRRRGIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRR-YGVPPDR 153 (160)
T ss_dssp EEEEHHHHHHH--HHHHHHHHT--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHH-H---GGG
T ss_pred EEecccchhHH--HHHHHHccCCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHH-hCCCCCc
Confidence 99999654332 5555557899999999996432 22344455666888999999999999999998865 8999999
Q ss_pred eEEccCC
Q psy8013 167 VSVIPNA 173 (252)
Q Consensus 167 i~vI~ng 173 (252)
+.|||||
T Consensus 154 i~vipnG 160 (160)
T PF13579_consen 154 IHVIPNG 160 (160)
T ss_dssp EEE----
T ss_pred EEEeCcC
Confidence 9999998
No 8
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.91 E-value=4.3e-23 Score=165.00 Aligned_cols=174 Identities=22% Similarity=0.278 Sum_probs=116.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCc--EEEEEeccCCCC-------cceeeeeCCeEEEEeecccccCCC---cccccccch
Q psy8013 7 YPNVGGVEEHIFNLSQCLLQRGH--KVIVLTHSYKDR-------VGIRYMTNGLKVYYCPIKTFYNQS---ILPTMVCSI 74 (252)
Q Consensus 7 ~P~~GG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~ 74 (252)
-|..||+++++.+|+++|+++|| +|+|+|...++. .......+|+++++++........ ..+.+....
T Consensus 22 ~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~ 101 (439)
T TIGR02472 22 DADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELA 101 (439)
T ss_pred CCCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHH
Confidence 47889999999999999999997 999999643211 122334689999999865322110 011111222
Q ss_pred HHHHHHHhhC--CCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCch--------hh------HHHH--HHHH
Q psy8013 75 PLVRHILLRE--EISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADS--------SA------IVTN--KCLE 136 (252)
Q Consensus 75 ~~l~~~~~~~--~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~--------~~------~~~~--~~~~ 136 (252)
..+.+.+++. +|||||+|++...+. +..+++..++|+|+|.|+....... .. .+.. ...+
T Consensus 102 ~~l~~~~~~~~~~~DvIH~h~~~~~~~--~~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (439)
T TIGR02472 102 DNLLQHLRQQGHLPDLIHAHYADAGYV--GARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEE 179 (439)
T ss_pred HHHHHHHHHcCCCCCEEEEcchhHHHH--HHHHHHHhCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHH
Confidence 3555666643 799999998765443 7777888899999999985321100 00 0011 1245
Q ss_pred HhhcCCCEEEEechhhhhhHHHh-hccCCCceEEccCCccCCCCCCC
Q psy8013 137 ISLAGCNHCICVSHIGKENTVLR-ARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 137 ~~~~~~d~vi~~S~~~~~~~~~~-~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
+.++.+|.++++|.......... .+++++++.+||||||.+.|.+.
T Consensus 180 ~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~ 226 (439)
T TIGR02472 180 ETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPP 226 (439)
T ss_pred HHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCC
Confidence 67888999999997644332222 36778899999999999998764
No 9
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.91 E-value=1.2e-22 Score=163.55 Aligned_cols=180 Identities=21% Similarity=0.185 Sum_probs=117.2
Q ss_pred CCCCCCCCC--CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce------------------eeeeCCeEEEEeeccc
Q psy8013 1 MVSDFFYPN--VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI------------------RYMTNGLKVYYCPIKT 60 (252)
Q Consensus 1 ~v~~~~~P~--~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~------------------~~~~~~~~v~~~~~~~ 60 (252)
+||..++|. .||.+.++..|+++|+++||+|+|+++..+..... ....+|++++.++...
T Consensus 5 ~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v~~~~ 84 (466)
T PRK00654 5 FVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLIDAPH 84 (466)
T ss_pred EEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEEeCHH
Confidence 366777776 99999999999999999999999999975432100 0124688888887543
Q ss_pred ccCCC-ccccc--c----cchHHHHHHHhh--CCCcEEEecCchhHHHHHHHHHHHh-----cCCcEEEEecCCCCCCch
Q psy8013 61 FYNQS-ILPTM--V----CSIPLVRHILLR--EEISIVHGHSAFSALAHETMMIARL-----LGLKTVFTDHSLFGFADS 126 (252)
Q Consensus 61 ~~~~~-~~~~~--~----~~~~~l~~~~~~--~~~Dvvh~~~~~~~~~~~~~~~~~~-----~~~p~v~~~h~~~~~~~~ 126 (252)
..... .+... . .+......++++ .+|||||+|.+.+++. +..+++. .++|+|+|+|+.......
T Consensus 85 ~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~--~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~ 162 (466)
T PRK00654 85 LFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLI--PALLKEKYWRGYPDIKTVFTIHNLAYQGLF 162 (466)
T ss_pred HcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHH--HHHHHHhhhccCCCCCEEEEcCCCcCCCcC
Confidence 32211 11110 0 011122233332 4899999999887654 4445433 379999999997321111
Q ss_pred hh----------------HH--H--HHHHHHhhcCCCEEEEechhhhhhHHHh---------hccCCCceEEccCCccCC
Q psy8013 127 SA----------------IV--T--NKCLEISLAGCNHCICVSHIGKENTVLR---------ARVNHYNVSVIPNAVDTT 177 (252)
Q Consensus 127 ~~----------------~~--~--~~~~~~~~~~~d~vi~~S~~~~~~~~~~---------~~~~~~~i~vI~ngvd~~ 177 (252)
.. .+ . ..+++..+..+|.|+++|+..++++... ++.+.+++.+||||||.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~ 242 (466)
T PRK00654 163 PAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYD 242 (466)
T ss_pred CHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCcc
Confidence 00 00 0 1224556788999999999998876432 133467999999999999
Q ss_pred CCCCC
Q psy8013 178 VFVPD 182 (252)
Q Consensus 178 ~f~~~ 182 (252)
.|.|.
T Consensus 243 ~~~p~ 247 (466)
T PRK00654 243 IWNPE 247 (466)
T ss_pred ccCCc
Confidence 98775
No 10
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.91 E-value=4.1e-23 Score=163.34 Aligned_cols=172 Identities=20% Similarity=0.205 Sum_probs=117.6
Q ss_pred CCCCCCCCC-CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccc-hHHHH
Q psy8013 1 MVSDFFYPN-VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCS-IPLVR 78 (252)
Q Consensus 1 ~v~~~~~P~-~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~l~ 78 (252)
+++++|+|. .||+++++.+|+++|.+. ++|+|++..... ....++++++++....... ....+.. ...+.
T Consensus 5 ~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 76 (388)
T TIGR02149 5 VLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR-----FDSEGLTVKGYRPWSELKE--ANKALGTFSVDLA 76 (388)
T ss_pred EEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch-----hcCCCeEEEEecChhhccc--hhhhhhhhhHHHH
Confidence 468889998 499999999999999987 788888875322 2345777776654322111 0011111 11122
Q ss_pred HHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCch-------hhHHHHHHHHHhhcCCCEEEEechh
Q psy8013 79 HILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADS-------SAIVTNKCLEISLAGCNHCICVSHI 151 (252)
Q Consensus 79 ~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~-------~~~~~~~~~~~~~~~~d~vi~~S~~ 151 (252)
......++||||+|.+...+. +.++++..++|+|++.|+..+...+ ...+..++.+..++.+|.++++|+.
T Consensus 77 ~~~~~~~~divh~~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~ 154 (388)
T TIGR02149 77 MANDPVDADVVHSHTWYTFLA--GHLAKKLYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSGG 154 (388)
T ss_pred HhhCCCCCCeEeecchhhhhH--HHHHHHhcCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccHH
Confidence 222335799999999766543 5566677899999999997542211 1123445567788889999999999
Q ss_pred hhhhHHHhh-ccCCCceEEccCCccCCCCCCC
Q psy8013 152 GKENTVLRA-RVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 152 ~~~~~~~~~-~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
+++.+...+ +++.+++.+||||+|.+.|.+.
T Consensus 155 ~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~ 186 (388)
T TIGR02149 155 MREDILKYYPDLDPEKVHVIYNGIDTKEYKPD 186 (388)
T ss_pred HHHHHHHHcCCCCcceEEEecCCCChhhcCCC
Confidence 998876655 5667899999999999887654
No 11
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.90 E-value=1.6e-22 Score=159.26 Aligned_cols=164 Identities=20% Similarity=0.154 Sum_probs=113.4
Q ss_pred CCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcE
Q psy8013 9 NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISI 88 (252)
Q Consensus 9 ~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dv 88 (252)
..||+|+++.+|++.|.+.|++++|++....+.........|++++.++.... ..+.....+.+++++.+|||
T Consensus 12 ~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~Di 84 (374)
T TIGR03088 12 DVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPG-------KDVAVYPQLYRLLRQLRPDI 84 (374)
T ss_pred CCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCC-------CChHHHHHHHHHHHHhCCCE
Confidence 47999999999999999999999999865433322233456788887764321 22344567888899999999
Q ss_pred EEecCchhHHHHHHHHHHHhcCCcE-EEEecCCCCCCchhhHHH-HHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCc
Q psy8013 89 VHGHSAFSALAHETMMIARLLGLKT-VFTDHSLFGFADSSAIVT-NKCLEISLAGCNHCICVSHIGKENTVLRARVNHYN 166 (252)
Q Consensus 89 vh~~~~~~~~~~~~~~~~~~~~~p~-v~~~h~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~ 166 (252)
||+|+..... +..+++..++|. +++.|+..........+. ..+.+...+.+|.++++|+..++.+...++++.++
T Consensus 85 vh~~~~~~~~---~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~ 161 (374)
T TIGR03088 85 VHTRNLAALE---AQLPAALAGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRGPVKVPPAK 161 (374)
T ss_pred EEEcchhHHH---HHHHHHhcCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHHHHHhcCCChhh
Confidence 9999864422 445566677775 556665321111111222 22233344569999999999998876677888889
Q ss_pred eEEccCCccCCCCCCC
Q psy8013 167 VSVIPNAVDTTVFVPD 182 (252)
Q Consensus 167 i~vI~ngvd~~~f~~~ 182 (252)
+.+||||+|.+.|.+.
T Consensus 162 ~~vi~ngvd~~~~~~~ 177 (374)
T TIGR03088 162 IHQIYNGVDTERFHPS 177 (374)
T ss_pred EEEeccCccccccCCC
Confidence 9999999999888664
No 12
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.89 E-value=3e-22 Score=157.50 Aligned_cols=172 Identities=20% Similarity=0.185 Sum_probs=110.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCC
Q psy8013 7 YPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEI 86 (252)
Q Consensus 7 ~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (252)
+|..||+++++.++++.|.+.||+|+|++...+... .....++.++.++...................+.+.+++.+|
T Consensus 8 ~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 85 (371)
T cd04962 8 YPTYGGSGVVATELGKALARRGHEVHFITSSRPFRL--DEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAEVAKRYKL 85 (371)
T ss_pred EeCCCCccchHHHHHHHHHhcCCceEEEecCCCcch--hhhccCeEEEEecccccchhhcchhHHHHHHHHHHHHhcCCc
Confidence 577899999999999999999999999997633211 112334444433322111111111122234567788888999
Q ss_pred cEEEecCchhHHHHHHHHHHHh---cCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccC
Q psy8013 87 SIVHGHSAFSALAHETMMIARL---LGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVN 163 (252)
Q Consensus 87 Dvvh~~~~~~~~~~~~~~~~~~---~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~ 163 (252)
||||+|.+.+... .+.+..+. .++|+|++.|+..............+.+..++++|.++++|+..++.+...+ ..
T Consensus 86 divh~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-~~ 163 (371)
T cd04962 86 DLLHVHYAVPHAV-AAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLRQETYELF-DI 163 (371)
T ss_pred cEEeecccCCccH-HHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHHHHHHHHHhc-CC
Confidence 9999997644221 12222222 3899999999852211111122334567778889999999999998765443 34
Q ss_pred CCceEEccCCccCCCCCCC
Q psy8013 164 HYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 164 ~~~i~vI~ngvd~~~f~~~ 182 (252)
.+++.+||||+|...|.+.
T Consensus 164 ~~~i~vi~n~~~~~~~~~~ 182 (371)
T cd04962 164 TKEIEVIPNFVDEDRFRPK 182 (371)
T ss_pred cCCEEEecCCcCHhhcCCC
Confidence 6789999999998777654
No 13
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.89 E-value=1.2e-21 Score=158.29 Aligned_cols=180 Identities=22% Similarity=0.244 Sum_probs=116.5
Q ss_pred CCCCCCCCC--CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce-------------------------eeeeCCeEE
Q psy8013 1 MVSDFFYPN--VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI-------------------------RYMTNGLKV 53 (252)
Q Consensus 1 ~v~~~~~P~--~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-------------------------~~~~~~~~v 53 (252)
+||..++|. .||.+.++..|+++|+++||+|.|+++..+..... ....+|+++
T Consensus 5 ~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 84 (473)
T TIGR02095 5 FVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVEGVPV 84 (473)
T ss_pred EEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEECCceE
Confidence 356677775 99999999999999999999999999976432110 123467777
Q ss_pred EEeecccccCC--Cccc----c----cccchHHHHHHHh--hCCCcEEEecCchhHHHHHHHHHHHhcC---CcEEEEec
Q psy8013 54 YYCPIKTFYNQ--SILP----T----MVCSIPLVRHILL--REEISIVHGHSAFSALAHETMMIARLLG---LKTVFTDH 118 (252)
Q Consensus 54 ~~~~~~~~~~~--~~~~----~----~~~~~~~l~~~~~--~~~~Dvvh~~~~~~~~~~~~~~~~~~~~---~p~v~~~h 118 (252)
+.+........ ..+. . ...+.....++++ ..+|||||+|.+.+.+. +..++...+ +|+|+|+|
T Consensus 85 ~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~--~~~l~~~~~~~~~~~v~TiH 162 (473)
T TIGR02095 85 YFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALV--PALLKAVYRPNPIKTVFTIH 162 (473)
T ss_pred EEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHH--HHHHHhhccCCCCCEEEEcC
Confidence 77765432111 0111 1 1111122233333 36899999999887654 555555555 89999999
Q ss_pred CCCCCCchhhH-----------H---------HHHHHHHhhcCCCEEEEechhhhhhHHHh-hc--------cCCCceEE
Q psy8013 119 SLFGFADSSAI-----------V---------TNKCLEISLAGCNHCICVSHIGKENTVLR-AR--------VNHYNVSV 169 (252)
Q Consensus 119 ~~~~~~~~~~~-----------~---------~~~~~~~~~~~~d~vi~~S~~~~~~~~~~-~~--------~~~~~i~v 169 (252)
+.......... + .-.+++..+..||.++++|+..++++... ++ ..++++.+
T Consensus 163 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~ 242 (473)
T TIGR02095 163 NLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRG 242 (473)
T ss_pred CCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEE
Confidence 97421111000 0 01124667888999999999988876432 11 13579999
Q ss_pred ccCCccCCCCCCC
Q psy8013 170 IPNAVDTTVFVPD 182 (252)
Q Consensus 170 I~ngvd~~~f~~~ 182 (252)
|+||||.+.|.|.
T Consensus 243 I~NGid~~~~~p~ 255 (473)
T TIGR02095 243 ILNGIDTEVWNPA 255 (473)
T ss_pred EeCCCCccccCCC
Confidence 9999999998864
No 14
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.88 E-value=1.9e-21 Score=154.41 Aligned_cols=179 Identities=22% Similarity=0.228 Sum_probs=123.7
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce-eeeeCCeEEEEeecccccCC---CcccccccchHHHH
Q psy8013 3 SDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI-RYMTNGLKVYYCPIKTFYNQ---SILPTMVCSIPLVR 78 (252)
Q Consensus 3 ~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~l~ 78 (252)
+...+|..||+++++.+|+++|.+.||+|+|++......... .....++.+++++....... ...+........+.
T Consensus 13 ~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (398)
T cd03800 13 AQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLL 92 (398)
T ss_pred ccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHH
Confidence 345568899999999999999999999999999764432221 23456788888775432211 11111122334455
Q ss_pred HHHhhC--CCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCch--------hhHHHHHHHHHhhcCCCEEEEe
Q psy8013 79 HILLRE--EISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADS--------SAIVTNKCLEISLAGCNHCICV 148 (252)
Q Consensus 79 ~~~~~~--~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~--------~~~~~~~~~~~~~~~~d~vi~~ 148 (252)
+.++.. +||+||+|.+..... +..+++..++|+|++.|+....... .........+..++.+|.++++
T Consensus 93 ~~~~~~~~~~Div~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 170 (398)
T cd03800 93 RFLRREGGRPDLIHAHYWDSGLV--ALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIAS 170 (398)
T ss_pred HHHHhcCCCccEEEEecCccchH--HHHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEc
Confidence 666666 999999998655443 6677788899999999986432111 0111123356678889999999
Q ss_pred chhhhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 149 SHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 149 S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
|+..++.+...+..+..++.+||||+|.+.|.+..
T Consensus 171 s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~ 205 (398)
T cd03800 171 TPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYG 205 (398)
T ss_pred CHHHHHHHHHHccccccccEEECCCCCccceeccc
Confidence 99998887665555566799999999998876654
No 15
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.88 E-value=3.2e-21 Score=156.30 Aligned_cols=181 Identities=20% Similarity=0.253 Sum_probs=117.4
Q ss_pred CCCCCCCC--CCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce-------------------------eeeeCCeEE
Q psy8013 1 MVSDFFYP--NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI-------------------------RYMTNGLKV 53 (252)
Q Consensus 1 ~v~~~~~P--~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-------------------------~~~~~~~~v 53 (252)
+||..+.| ..||.+.++..|+++|+++||+|+|+++..+..... ....+|+++
T Consensus 4 ~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 83 (476)
T cd03791 4 FVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDGVPV 83 (476)
T ss_pred EEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCCceE
Confidence 35666656 499999999999999999999999999865432110 113467888
Q ss_pred EEeecccccCCCc------c--cc----cccchHHHHHHHhh--CCCcEEEecCchhHHHHHHHHHHHh------cCCcE
Q psy8013 54 YYCPIKTFYNQSI------L--PT----MVCSIPLVRHILLR--EEISIVHGHSAFSALAHETMMIARL------LGLKT 113 (252)
Q Consensus 54 ~~~~~~~~~~~~~------~--~~----~~~~~~~l~~~~~~--~~~Dvvh~~~~~~~~~~~~~~~~~~------~~~p~ 113 (252)
+.+.......... . .. ...+......++++ .+|||||+|.+.+.+. +..+... .++|+
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~--~~~l~~~~~~~~~~~~~~ 161 (476)
T cd03791 84 YFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLV--PALLKEKYADPFFKNIKT 161 (476)
T ss_pred EEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHH--HHHHHHhhccccCCCCCE
Confidence 8776543221111 0 00 00011123334444 7999999999887554 4444443 38999
Q ss_pred EEEecCCCCCCchhhH-H--------------------HHHHHHHhhcCCCEEEEechhhhhhHHHh---------hccC
Q psy8013 114 VFTDHSLFGFADSSAI-V--------------------TNKCLEISLAGCNHCICVSHIGKENTVLR---------ARVN 163 (252)
Q Consensus 114 v~~~h~~~~~~~~~~~-~--------------------~~~~~~~~~~~~d~vi~~S~~~~~~~~~~---------~~~~ 163 (252)
|+|+|+.......... + ...+++..+..+|.++++|+..++.+... ....
T Consensus 162 v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~ 241 (476)
T cd03791 162 VFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRAR 241 (476)
T ss_pred EEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhc
Confidence 9999997422111000 0 01345677888999999999998876431 2234
Q ss_pred CCceEEccCCccCCCCCCCc
Q psy8013 164 HYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 164 ~~~i~vI~ngvd~~~f~~~~ 183 (252)
..++.+|+||||.+.|.|..
T Consensus 242 ~~ki~~I~NGid~~~~~p~~ 261 (476)
T cd03791 242 AGKLSGILNGIDYDVWNPAT 261 (476)
T ss_pred cCCeEEEeCCCcCcccCccc
Confidence 67999999999999988754
No 16
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.87 E-value=2.3e-20 Score=157.26 Aligned_cols=173 Identities=17% Similarity=0.145 Sum_probs=118.0
Q ss_pred CCCCcHHHHHHHHHHHHHHCC--cEEEEEeccCCCCc-------ce--------------eeeeCCeEEEEeeccccc--
Q psy8013 8 PNVGGVEEHIFNLSQCLLQRG--HKVIVLTHSYKDRV-------GI--------------RYMTNGLKVYYCPIKTFY-- 62 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~-------~~--------------~~~~~~~~v~~~~~~~~~-- 62 (252)
+..||...|+.+|+++|+++| |+|+|+|.....+. +. ....+|+.|+++|..+..
T Consensus 192 ~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~ 271 (1050)
T TIGR02468 192 SDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKY 271 (1050)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCC
Confidence 457999999999999999998 89999998653221 10 012358999999987642
Q ss_pred --CCCcccccccchHHHHHHHhh--------------CCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCc-
Q psy8013 63 --NQSILPTMVCSIPLVRHILLR--------------EEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFAD- 125 (252)
Q Consensus 63 --~~~~~~~~~~~~~~l~~~~~~--------------~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~- 125 (252)
+...++.+-.+...+.+.+.+ ..|||||+|++.++.. +..+++..++|+|+|.|.+-....
T Consensus 272 l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~a--a~~L~~~lgVP~V~T~HSLgr~K~~ 349 (1050)
T TIGR02468 272 IPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDS--AALLSGALNVPMVLTGHSLGRDKLE 349 (1050)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHH--HHHHHHhhCCCEEEECccchhhhhh
Confidence 111122222222233333221 1499999999988776 888899999999999997611000
Q ss_pred ------------hh--hHHHHH--HHHHhhcCCCEEEEechhhhhhHHHhhc-c---------------------CCCce
Q psy8013 126 ------------SS--AIVTNK--CLEISLAGCNHCICVSHIGKENTVLRAR-V---------------------NHYNV 167 (252)
Q Consensus 126 ------------~~--~~~~~~--~~~~~~~~~d~vi~~S~~~~~~~~~~~~-~---------------------~~~~i 167 (252)
.. ..+..+ ..+..+..||.||++|...+++....|+ + ...++
T Consensus 350 ~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri 429 (1050)
T TIGR02468 350 QLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRM 429 (1050)
T ss_pred hhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCe
Confidence 00 011122 3577888999999999999986544442 1 13499
Q ss_pred EEccCCccCCCCCCC
Q psy8013 168 SVIPNAVDTTVFVPD 182 (252)
Q Consensus 168 ~vI~ngvd~~~f~~~ 182 (252)
.|||||||++.|.|.
T Consensus 430 ~VIPpGVD~~~F~P~ 444 (1050)
T TIGR02468 430 AVIPPGMEFSHIVPH 444 (1050)
T ss_pred EEeCCCCcHHHccCC
Confidence 999999999999874
No 17
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.86 E-value=2.1e-20 Score=146.60 Aligned_cols=169 Identities=22% Similarity=0.190 Sum_probs=108.9
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHH-
Q psy8013 3 SDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHIL- 81 (252)
Q Consensus 3 ~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 81 (252)
+..|||..||+++++.+++++|.++||+|+|++........ .....|++++.++...... ..........+.+.+
T Consensus 7 ~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 82 (363)
T cd04955 7 TRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK-ETEYNGVRLIHIPAPEIGG---LGTIIYDILAILHALF 82 (363)
T ss_pred cCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc-ccccCCceEEEcCCCCccc---hhhhHHHHHHHHHHHh
Confidence 45578889999999999999999999999999986433221 3345788888887653211 111111122222222
Q ss_pred hhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCC----chhhHHHHHHHHHhhcCCCEEEEechhhhhhHH
Q psy8013 82 LREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFA----DSSAIVTNKCLEISLAGCNHCICVSHIGKENTV 157 (252)
Q Consensus 82 ~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~----~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~ 157 (252)
.+.++|++|...+.... ....++..++|++++.|+..... .....+.+...+..++.+|.++++|+..++.+.
T Consensus 83 ~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 159 (363)
T cd04955 83 VKRDIDHVHALGPAIAP---FLPLLRLKGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEYLK 159 (363)
T ss_pred ccCCeEEEEecCccHHH---HHHHHHhcCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHHHHHH
Confidence 24455666655544311 33344556899999999863211 111223334455677889999999999998875
Q ss_pred HhhccCCCceEEccCCccCCCCCC
Q psy8013 158 LRARVNHYNVSVIPNAVDTTVFVP 181 (252)
Q Consensus 158 ~~~~~~~~~i~vI~ngvd~~~f~~ 181 (252)
..++.. . .+||||+|...+.+
T Consensus 160 ~~~~~~--~-~~i~ngv~~~~~~~ 180 (363)
T cd04955 160 EKYGRD--S-TYIPYGADHVVSSE 180 (363)
T ss_pred HhcCCC--C-eeeCCCcChhhcch
Confidence 666642 3 89999999877654
No 18
>PLN02316 synthase/transferase
Probab=99.86 E-value=4.2e-20 Score=156.04 Aligned_cols=171 Identities=20% Similarity=0.235 Sum_probs=111.1
Q ss_pred CCCCCCCC--CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCc-------ce--------------eeeeCCeEEEEeec
Q psy8013 2 VSDFFYPN--VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRV-------GI--------------RYMTNGLKVYYCPI 58 (252)
Q Consensus 2 v~~~~~P~--~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-------~~--------------~~~~~~~~v~~~~~ 58 (252)
||..+.|. .||.+.++..|+++|++.||+|.|+++.++... .. ....+|+.++.+..
T Consensus 593 VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~GV~vyfl~~ 672 (1036)
T PLN02316 593 IAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEGLSVYFLEP 672 (1036)
T ss_pred EEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECCcEEEEEec
Confidence 56677784 899999999999999999999999999765210 00 01234666666653
Q ss_pred cc-cc-CCCcc--c----ccccchHHHHHHHh--hCCCcEEEecCchhHHHHHHHHHHHh------cCCcEEEEecCCCC
Q psy8013 59 KT-FY-NQSIL--P----TMVCSIPLVRHILL--REEISIVHGHSAFSALAHETMMIARL------LGLKTVFTDHSLFG 122 (252)
Q Consensus 59 ~~-~~-~~~~~--~----~~~~~~~~l~~~~~--~~~~Dvvh~~~~~~~~~~~~~~~~~~------~~~p~v~~~h~~~~ 122 (252)
.. .. ....+ + ++..+......+++ ..+|||||+|.+.+.+. +.+++.. .++|+|+|+|+..
T Consensus 673 ~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talv--a~llk~~~~~~~~~~~p~V~TiHnl~- 749 (1036)
T PLN02316 673 QNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPV--AWLFKDHYAHYGLSKARVVFTIHNLE- 749 (1036)
T ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHH--HHHHHHhhhhhccCCCCEEEEeCCcc-
Confidence 21 11 00000 0 11111112223333 25899999999877554 4444332 4589999999862
Q ss_pred CCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccC--CCceEEccCCccCCCCCCC
Q psy8013 123 FADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVN--HYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~--~~~i~vI~ngvd~~~f~~~ 182 (252)
+ . ...++..+..+|.|+++|+..++++.....+. ..++.+||||||++.|.|.
T Consensus 750 ~---~----~n~lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~ 804 (1036)
T PLN02316 750 F---G----ANHIGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPY 804 (1036)
T ss_pred c---c----hhHHHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCccccccCCc
Confidence 1 1 11245667789999999999998875543333 4799999999999987664
No 19
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.85 E-value=1.2e-19 Score=143.08 Aligned_cols=166 Identities=14% Similarity=0.028 Sum_probs=100.8
Q ss_pred CCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeE-EEEeecccccC------CCcccccccchHHHHHHH
Q psy8013 9 NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLK-VYYCPIKTFYN------QSILPTMVCSIPLVRHIL 81 (252)
Q Consensus 9 ~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~------~~~~~~~~~~~~~l~~~~ 81 (252)
..||+|+.+.+|++.|.++||+|.++.....+..... ...++. ++......... +..-...+.....+.+++
T Consensus 11 ~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 89 (405)
T PRK10125 11 AEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESV-SHQNYPQVIKHTPRMTAMANIALFRLFNRDLFGNFNELYRTI 89 (405)
T ss_pred cCCchhHHHHHHHHHHHhcCCeEEEEEecCCCccccc-ccCCcceEEEecccHHHHHHHHHHHhcchhhcchHHHHHHHH
Confidence 3699999999999999999999999998754433211 111111 11111000000 000012234455566666
Q ss_pred -hhCCCcEEEecCchhH---HHHHHH----HHHHhcCCcEEEEecCCCCCC----------c-------------h----
Q psy8013 82 -LREEISIVHGHSAFSA---LAHETM----MIARLLGLKTVFTDHSLFGFA----------D-------------S---- 126 (252)
Q Consensus 82 -~~~~~Dvvh~~~~~~~---~~~~~~----~~~~~~~~p~v~~~h~~~~~~----------~-------------~---- 126 (252)
++.+|||||+|...+. +..+.. ...+..++|+|+|.||.|... . .
T Consensus 90 ~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~ 169 (405)
T PRK10125 90 TRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPPVK 169 (405)
T ss_pred hhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCCCCc
Confidence 6789999999987652 211111 112345789999999998531 0 0
Q ss_pred ---h---hHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCC
Q psy8013 127 ---S---AIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTT 177 (252)
Q Consensus 127 ---~---~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~ 177 (252)
. ....+...+..++.++.+|++|++.++.+...+ +..++.|||||||++
T Consensus 170 ~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~--~~~~i~vI~NGid~~ 224 (405)
T PRK10125 170 VDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLY--GPGRCRIINNGIDMA 224 (405)
T ss_pred cchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHc--CCCCEEEeCCCcCcc
Confidence 0 001222244455567899999999998764333 357999999999964
No 20
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.85 E-value=9.6e-20 Score=141.35 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=105.3
Q ss_pred CCCCC----CCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHH
Q psy8013 2 VSDFF----YPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLV 77 (252)
Q Consensus 2 v~~~~----~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l 77 (252)
+++.+ +|..||+++++.+|+++|.+.||+|++++.......... ............ .............+
T Consensus 6 i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (335)
T cd03802 6 VAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPL-----VPVVPEPLRLDA-PGRDRAEAEALALA 79 (335)
T ss_pred EcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccce-----eeccCCCccccc-chhhHhhHHHHHHH
Confidence 56666 458999999999999999999999999998643221100 000000000000 00011223344567
Q ss_pred HHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHH
Q psy8013 78 RHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTV 157 (252)
Q Consensus 78 ~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~ 157 (252)
.+++++.+|||||+|....... +++..++|+|++.|+........ ........+.++++|+..++.+.
T Consensus 80 ~~~~~~~~~Divh~~~~~~~~~-----~~~~~~~~~v~~~h~~~~~~~~~-------~~~~~~~~~~~~~~s~~~~~~~~ 147 (335)
T cd03802 80 ERALAAGDFDIVHNHSLHLPLP-----FARPLPVPVVTTLHGPPDPELLK-------LYYAARPDVPFVSISDAQRRPWP 147 (335)
T ss_pred HHHHhcCCCCEEEecCcccchh-----hhcccCCCEEEEecCCCCcccch-------HHHhhCcCCeEEEecHHHHhhcc
Confidence 7888889999999998766432 56678899999999974322111 23445668899999998887542
Q ss_pred HhhccCCCceEEccCCccCCCCCCC
Q psy8013 158 LRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 158 ~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
. . .++.+||||+|.+.|.+.
T Consensus 148 -~--~--~~~~vi~ngvd~~~~~~~ 167 (335)
T cd03802 148 -P--L--PWVATVHNGIDLDDYPFR 167 (335)
T ss_pred -c--c--cccEEecCCcChhhCCCC
Confidence 1 1 789999999999988764
No 21
>PRK14098 glycogen synthase; Provisional
Probab=99.84 E-value=4.3e-19 Score=142.89 Aligned_cols=180 Identities=17% Similarity=0.204 Sum_probs=107.6
Q ss_pred CCCCCCCC--CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce-----------ee--e-e---------------CC
Q psy8013 2 VSDFFYPN--VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI-----------RY--M-T---------------NG 50 (252)
Q Consensus 2 v~~~~~P~--~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-----------~~--~-~---------------~~ 50 (252)
|+....|- .||.+-++..|.++|+++||+|.|+.+.+..-... .. . . .+
T Consensus 11 v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (489)
T PRK14098 11 VSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVTALPSSK 90 (489)
T ss_pred EeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEecccCCC
Confidence 45555564 89999999999999999999999999965322110 00 0 0 01
Q ss_pred eEEEEeecccccCC-Ccc---------cccc----cchHHHHHHHhh--CCCcEEEecCchhHHHHHHHHHHHh------
Q psy8013 51 LKVYYCPIKTFYNQ-SIL---------PTMV----CSIPLVRHILLR--EEISIVHGHSAFSALAHETMMIARL------ 108 (252)
Q Consensus 51 ~~v~~~~~~~~~~~-~~~---------~~~~----~~~~~l~~~~~~--~~~Dvvh~~~~~~~~~~~~~~~~~~------ 108 (252)
+.++.+.......+ ..+ +... .+.....+++++ .+|||||+|.|.+++. +.++.+.
T Consensus 91 v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~--~~~l~~~~~~~~~ 168 (489)
T PRK14098 91 IQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLV--PLLLKTVYADHEF 168 (489)
T ss_pred ceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHH--HHHHHHHhhhccc
Confidence 22222211111000 000 0000 011112233433 5899999999887654 4444433
Q ss_pred -cCCcEEEEecCCCCCCchhh---------HHH---------HHHHHHhhcCCCEEEEechhhhhhHHHh----hccC--
Q psy8013 109 -LGLKTVFTDHSLFGFADSSA---------IVT---------NKCLEISLAGCNHCICVSHIGKENTVLR----ARVN-- 163 (252)
Q Consensus 109 -~~~p~v~~~h~~~~~~~~~~---------~~~---------~~~~~~~~~~~d~vi~~S~~~~~~~~~~----~~~~-- 163 (252)
.++|+|+|+|+......... ... ..+++..+..||.|+++|+..++++... ++++
T Consensus 169 ~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~ 248 (489)
T PRK14098 169 FKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKV 248 (489)
T ss_pred cCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcChHHH
Confidence 27999999999732110000 000 1234567788999999999999887542 2332
Q ss_pred ----CCceEEccCCccCCCCCCCc
Q psy8013 164 ----HYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 164 ----~~~i~vI~ngvd~~~f~~~~ 183 (252)
.+++.+|+||||.+.|.|..
T Consensus 249 l~~~~~kl~~I~NGID~~~~~p~~ 272 (489)
T PRK14098 249 LEERKMRLHGILNGIDTRQWNPST 272 (489)
T ss_pred HHhcCCCeeEEeCCccccccCCcc
Confidence 67999999999999998754
No 22
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.84 E-value=2.2e-19 Score=140.71 Aligned_cols=174 Identities=22% Similarity=0.225 Sum_probs=117.6
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
++++.|+|..||.++++.+|+++|.+.||+|++++.......... .....+...+.... ............+.+.
T Consensus 4 ~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 78 (364)
T cd03814 4 IVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGP--ARVVPVPSVPLPGY---PEIRLALPPRRRVRRL 78 (364)
T ss_pred EEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCC--CCceeecccccCcc---cceEecccchhhHHHH
Confidence 468899999999999999999999999999999998643222111 12222222221111 1111223344567777
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCC------chhhHHHHHHHHHhhcCCCEEEEechhhhh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFA------DSSAIVTNKCLEISLAGCNHCICVSHIGKE 154 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~------~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 154 (252)
++..+||+||++.... +...+..+++..++|++.+.|+.++.. .........+.++.++.+|.++++|+..++
T Consensus 79 ~~~~~pdii~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~ 157 (364)
T cd03814 79 LDAFAPDVVHIATPGP-LGLAALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLAD 157 (364)
T ss_pred HHhcCCCEEEEeccch-hhHHHHHHHHHcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHH
Confidence 8889999999996543 233366677788999999999875311 111222245567788889999999999987
Q ss_pred hHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 155 NTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 155 ~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.+ .. ....++.+++||+|.+.|.+..
T Consensus 158 ~~-~~--~~~~~~~~~~~g~~~~~~~~~~ 183 (364)
T cd03814 158 EL-RA--RGFRRVRLWPRGVDTELFHPRR 183 (364)
T ss_pred HH-hc--cCCCceeecCCCccccccCccc
Confidence 43 33 3347899999999998876543
No 23
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.83 E-value=9.2e-20 Score=142.56 Aligned_cols=158 Identities=23% Similarity=0.315 Sum_probs=117.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||+++++.+|+++|.+.||+|++++.... ........+++++.++..... ....+.....+.+.+++.+||+|
T Consensus 9 ~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~dii 82 (355)
T cd03819 9 SGGVERGTLELARALVERGHRSLVASAGGR--LVAELEAEGSRHIKLPFISKN----PLRILLNVARLRRLIREEKVDIV 82 (355)
T ss_pred cCcHHHHHHHHHHHHHHcCCEEEEEcCCCc--hHHHHHhcCCeEEEccccccc----hhhhHHHHHHHHHHHHHcCCCEE
Confidence 499999999999999999999999987532 211223456677666543221 11223445667788889999999
Q ss_pred EecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEE
Q psy8013 90 HGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSV 169 (252)
Q Consensus 90 h~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~v 169 (252)
|+|+....+. +.++++..++|+|++.|+.+.... ..+..+.++|.++++|+..++.+...++++.+++.+
T Consensus 83 ~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~--------~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~ 152 (355)
T cd03819 83 HARSRAPAWS--AYLAARRTRPPFVTTVHGFYSVNF--------RYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRV 152 (355)
T ss_pred EECCCchhHH--HHHHHHhcCCCEEEEeCCchhhHH--------HHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEE
Confidence 9998665443 556667779999999999753211 344556789999999999999876678888889999
Q ss_pred ccCCccCCCCCCCc
Q psy8013 170 IPNAVDTTVFVPDV 183 (252)
Q Consensus 170 I~ngvd~~~f~~~~ 183 (252)
||||+|.+.|.+..
T Consensus 153 i~ngi~~~~~~~~~ 166 (355)
T cd03819 153 IPRGVDLDRFDPGA 166 (355)
T ss_pred ecCCccccccCccc
Confidence 99999998886543
No 24
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.83 E-value=3.8e-19 Score=140.35 Aligned_cols=182 Identities=24% Similarity=0.305 Sum_probs=126.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCccee------eeeCCeEEEEeecccccCCCccc---ccc
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIR------YMTNGLKVYYCPIKTFYNQSILP---TMV 71 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~---~~~ 71 (252)
++++.|+|..||.++++.+++++|.+.||+|++++.......... ....+++++.++.........+. ...
T Consensus 4 ~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (394)
T cd03794 4 ILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLLNYL 83 (394)
T ss_pred EEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHHHhhh
Confidence 467888888899999999999999999999999998643332221 34577888887765433221111 111
Q ss_pred cchHHHHHHH--hhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCc----------hhhHHHHHHHHHhh
Q psy8013 72 CSIPLVRHIL--LREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFAD----------SSAIVTNKCLEISL 139 (252)
Q Consensus 72 ~~~~~l~~~~--~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~----------~~~~~~~~~~~~~~ 139 (252)
.........+ +..+||+||++.+.......+...++..++|++++.|+.++... ....+...+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (394)
T cd03794 84 SFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIY 163 (394)
T ss_pred HHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHH
Confidence 1122222233 47899999999844333333556667679999999999754211 11134455677888
Q ss_pred cCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 140 AGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 140 ~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
+.+|.++++|+..++.+. ..+.+..++.+||||+|...+.+..
T Consensus 164 ~~~d~vi~~s~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~ 206 (394)
T cd03794 164 RRADAIVVISPGMREYLV-RRGVPPEKISVIPNGVDLELFKPPP 206 (394)
T ss_pred hcCCEEEEECHHHHHHHH-hcCCCcCceEEcCCCCCHHHcCCcc
Confidence 899999999999998764 5677788999999999987776554
No 25
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.83 E-value=4.6e-19 Score=146.26 Aligned_cols=171 Identities=15% Similarity=0.112 Sum_probs=108.0
Q ss_pred CCCcHHHHHHHHHHHHHHCCc------------EEEEEec--cC-CC--CcceeeeeCCeEEEEeecccccCCCc-----
Q psy8013 9 NVGGVEEHIFNLSQCLLQRGH------------KVIVLTH--SY-KD--RVGIRYMTNGLKVYYCPIKTFYNQSI----- 66 (252)
Q Consensus 9 ~~GG~~~~~~~l~~~L~~~G~------------~V~v~~~--~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~~----- 66 (252)
..||+|+++.+|+.+|.+.++ ++.|++. .. ++ .........|+.++.++.........
T Consensus 292 ~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~~l~~~~~~~~~~~~~~~ 371 (694)
T PRK15179 292 GAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVSVYSDMQAWGGCEFSSLL 371 (694)
T ss_pred CCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEEEeccCCccCcccccccc
Confidence 369999999999999999854 2444442 21 11 11112235788888886543211000
Q ss_pred ---------cc-ccccchHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEE-EecCCCCCCchhh--HHHHH
Q psy8013 67 ---------LP-TMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVF-TDHSLFGFADSSA--IVTNK 133 (252)
Q Consensus 67 ---------~~-~~~~~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~-~~h~~~~~~~~~~--~~~~~ 133 (252)
.+ ........+.+++++.+|||||+|.....+. +..+++..++|+|+ +.|+......... .....
T Consensus 372 ~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~l--g~lAa~~~gvPvIv~t~h~~~~~~~~~~~~~~~~~ 449 (694)
T PRK15179 372 APYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFA--CALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDI 449 (694)
T ss_pred hhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHH--HHHHHHHcCCCEEEEEeCCCccccchhHHHHHHHH
Confidence 00 1223356788899999999999998776544 66777888999876 5676432111111 11112
Q ss_pred HHHHhh-cCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCC
Q psy8013 134 CLEISL-AGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVP 181 (252)
Q Consensus 134 ~~~~~~-~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~ 181 (252)
+...+. ..++.++++|+..++.+...++++.+++.|||||||.+.|.+
T Consensus 450 l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~ 498 (694)
T PRK15179 450 IYSELLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQ 498 (694)
T ss_pred HHHHHHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCC
Confidence 222222 235677778888887776677888899999999999887754
No 26
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.83 E-value=1e-19 Score=142.97 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=110.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHH
Q psy8013 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHIL 81 (252)
Q Consensus 2 v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (252)
+++.|+|. .|+++.++++.|. |+++++++....+.........++.+...+.... ........+.....+..++
T Consensus 5 ~~~~~~~~---~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (367)
T cd05844 5 FRPLLLAP---SETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVRLADLAGGKAGL-RLGALRLLTGSAPQLRRLL 78 (367)
T ss_pred EeCCCCCC---chHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccceeeeecccchhHH-HHHHHHhccccccHHHHHH
Confidence 34555554 8999999999994 7888888876443322222222233221111100 0000112233444566678
Q ss_pred hhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchh------hHHHHHHHHHhhcCCCEEEEechhhhhh
Q psy8013 82 LREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSS------AIVTNKCLEISLAGCNHCICVSHIGKEN 155 (252)
Q Consensus 82 ~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~------~~~~~~~~~~~~~~~d~vi~~S~~~~~~ 155 (252)
++.+||+||+|.....+. +..+++..|+|+|++.|+........ ........+..++.+|.++++|+.+++.
T Consensus 79 ~~~~~dvvh~~~~~~~~~--~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 156 (367)
T cd05844 79 RRHRPDLVHAHFGFDGVY--ALPLARRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFIRDR 156 (367)
T ss_pred HhhCCCEEEeccCchHHH--HHHHHHHcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHHHHH
Confidence 889999999997654333 66677888999999999752211110 1123344566778899999999999987
Q ss_pred HHHhhccCCCceEEccCCccCCCCCCC
Q psy8013 156 TVLRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 156 ~~~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
+ ...++++.++.++|||+|.+.|.+.
T Consensus 157 ~-~~~~~~~~~i~vi~~g~d~~~~~~~ 182 (367)
T cd05844 157 L-LALGFPPEKVHVHPIGVDTAKFTPA 182 (367)
T ss_pred H-HHcCCCHHHeEEecCCCCHHhcCCC
Confidence 6 4557778899999999999888764
No 27
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.83 E-value=4.3e-19 Score=138.85 Aligned_cols=175 Identities=20% Similarity=0.147 Sum_probs=115.5
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
+++++|+|..||+++++.+|+++|.+.||+|++++........ .....+.++.+++...... ...........+ .
T Consensus 4 ~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~ 78 (357)
T cd03795 4 HVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGR-DEERNGHRVIRAPSLLNVA--STPFSPSFFKQL--K 78 (357)
T ss_pred EecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcch-hhhccCceEEEeecccccc--cccccHHHHHHH--H
Confidence 3678999999999999999999999999999999986443222 2233445565554332111 001101111111 1
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRA 160 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~ 160 (252)
+...+||+||+|.+.+... ........++|++++.|+..............+.++.++.+|.++++|+...+.+....
T Consensus 79 ~~~~~~Dii~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~ 156 (357)
T cd03795 79 KLAKKADVIHLHFPNPLAD--LALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLR 156 (357)
T ss_pred hcCCCCCEEEEecCcchHH--HHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhc
Confidence 5577999999998765332 21222225789999999753222223334556677788999999999999988654433
Q ss_pred ccCCCceEEccCCccCCCCCCCc
Q psy8013 161 RVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 161 ~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.. ..++.+||||+|.+.+.+..
T Consensus 157 ~~-~~~~~~i~~gi~~~~~~~~~ 178 (357)
T cd03795 157 RF-RDKVRVIPLGLDPARYPRPD 178 (357)
T ss_pred CC-ccceEEecCCCChhhcCCcc
Confidence 33 47899999999998877644
No 28
>PRK14099 glycogen synthase; Provisional
Probab=99.83 E-value=1.1e-18 Score=140.54 Aligned_cols=180 Identities=22% Similarity=0.198 Sum_probs=110.1
Q ss_pred CCCCCCCC--CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCc----ce----ee-------------eeCCeEEEEeec
Q psy8013 2 VSDFFYPN--VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRV----GI----RY-------------MTNGLKVYYCPI 58 (252)
Q Consensus 2 v~~~~~P~--~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~----~~----~~-------------~~~~~~v~~~~~ 58 (252)
|+....|. .||.+-++..|.++|.+.||+|.|+.+.++.-. .. .. ..+|+.++-+..
T Consensus 9 v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 88 (485)
T PRK14099 9 VASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGGLDLFVLDA 88 (485)
T ss_pred EEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCCceEEEEeC
Confidence 45556664 899999999999999999999999999654321 00 00 113455554432
Q ss_pred ccccCCC--cc--------cccccch----HHHHHHH----hhCCCcEEEecCchhHHHHHHHHHHH--hcCCcEEEEec
Q psy8013 59 KTFYNQS--IL--------PTMVCSI----PLVRHIL----LREEISIVHGHSAFSALAHETMMIAR--LLGLKTVFTDH 118 (252)
Q Consensus 59 ~~~~~~~--~~--------~~~~~~~----~~l~~~~----~~~~~Dvvh~~~~~~~~~~~~~~~~~--~~~~p~v~~~h 118 (252)
.....+. .+ +.....+ +....++ ...+|||||+|.+.+.+. +.++.. ..++|+|+|+|
T Consensus 89 ~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~--~~~l~~~~~~~~~~V~TiH 166 (485)
T PRK14099 89 PHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLA--PAYLHYSGRPAPGTVFTIH 166 (485)
T ss_pred hHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHH--HHHHHhCCCCCCCEEEeCC
Confidence 2211110 01 1111011 1111222 347999999999887664 333322 34689999999
Q ss_pred CCCCCCchhh----------H--------HHH--HHHHHhhcCCCEEEEechhhhhhHHHhh---------ccCCCceEE
Q psy8013 119 SLFGFADSSA----------I--------VTN--KCLEISLAGCNHCICVSHIGKENTVLRA---------RVNHYNVSV 169 (252)
Q Consensus 119 ~~~~~~~~~~----------~--------~~~--~~~~~~~~~~d~vi~~S~~~~~~~~~~~---------~~~~~~i~v 169 (252)
+......... . +.. .+++..+..+|.|+++|+..++++.... ....+++.+
T Consensus 167 n~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~v 246 (485)
T PRK14099 167 NLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSG 246 (485)
T ss_pred CCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEE
Confidence 9732111000 0 000 1356778889999999999998875431 124679999
Q ss_pred ccCCccCCCCCCCc
Q psy8013 170 IPNAVDTTVFVPDV 183 (252)
Q Consensus 170 I~ngvd~~~f~~~~ 183 (252)
|+||||.+.|.|..
T Consensus 247 I~NGID~~~f~p~~ 260 (485)
T PRK14099 247 ILNGIDTAVWNPAT 260 (485)
T ss_pred EecCCchhhccccc
Confidence 99999999887754
No 29
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.82 E-value=1.6e-18 Score=135.65 Aligned_cols=176 Identities=30% Similarity=0.370 Sum_probs=119.3
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
+++..++|..||.+.++.++++.|.+.||+|++++............ ........... ...............+.+.
T Consensus 4 ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 4 LVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV-GGIVVVRPPPL--LRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred EEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee-cCcceecCCcc--cccchhHHHHHHHHHHHHH
Confidence 35677777789999999999999999999999999875433221111 11111110000 0000011222333456677
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCch-----hhHHHHHHHHHhhcCCCEEEEechhhhhh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADS-----SAIVTNKCLEISLAGCNHCICVSHIGKEN 155 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~-----~~~~~~~~~~~~~~~~d~vi~~S~~~~~~ 155 (252)
++..+||+||++....... ....++..++|++++.|+.+..... .........+..++.+|.++++|+..++.
T Consensus 81 ~~~~~~Dii~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~ 158 (374)
T cd03801 81 LRRERFDVVHAHDWLALLA--AALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREE 158 (374)
T ss_pred hhhcCCcEEEEechhHHHH--HHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHH
Confidence 7888999999999776443 3356777899999999998543221 13344455677888899999999999998
Q ss_pred HHHhhccCCCceEEccCCccCCCCCC
Q psy8013 156 TVLRARVNHYNVSVIPNAVDTTVFVP 181 (252)
Q Consensus 156 ~~~~~~~~~~~i~vI~ngvd~~~f~~ 181 (252)
+...++....++.++|||+|...+.+
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (374)
T cd03801 159 LRELGGVPPEKITVIPNGVDTERFRP 184 (374)
T ss_pred HHhcCCCCCCcEEEecCcccccccCc
Confidence 76666555579999999999988754
No 30
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.82 E-value=3.2e-18 Score=134.27 Aligned_cols=181 Identities=20% Similarity=0.195 Sum_probs=120.2
Q ss_pred CCCCCCCCC-CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeC----CeEEEEeecccccCCCcccccccchH
Q psy8013 1 MVSDFFYPN-VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTN----GLKVYYCPIKTFYNQSILPTMVCSIP 75 (252)
Q Consensus 1 ~v~~~~~P~-~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~ 75 (252)
+++..|||. .||.++++.++++.|.+.||+|++++.............. ...... ...................
T Consensus 3 ii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 81 (377)
T cd03798 3 VISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPV-LLPVVPLLKGPLLYLLAAR 81 (377)
T ss_pred EeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhccccccccccccc-CcchhhccccchhHHHHHH
Confidence 466777775 7999999999999999999999999986433221110000 000000 0000000001112233345
Q ss_pred HHHHHHh--hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhh
Q psy8013 76 LVRHILL--REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGK 153 (252)
Q Consensus 76 ~l~~~~~--~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~ 153 (252)
.+.+.++ ..+||+||++.... ........++..++|++++.|+................+..++.+|.++++|+..+
T Consensus 82 ~~~~~l~~~~~~~dii~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~ 160 (377)
T cd03798 82 ALLKLLKLKRFRPDLIHAHFAYP-DGFAAALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALA 160 (377)
T ss_pred HHHHHHhcccCCCCEEEEeccch-HHHHHHHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHH
Confidence 6777787 88999999996544 23335566777889999999997543332222455667788899999999999999
Q ss_pred hhHHHhhccCCCceEEccCCccCCCCCCCcc
Q psy8013 154 ENTVLRARVNHYNVSVIPNAVDTTVFVPDVS 184 (252)
Q Consensus 154 ~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~~ 184 (252)
+.+... +.+..++.++|||+|.+.+.+...
T Consensus 161 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~ 190 (377)
T cd03798 161 DELKAL-GIDPEKVTVIPNGVDTERFSPADR 190 (377)
T ss_pred HHHHHh-cCCCCceEEcCCCcCcccCCCcch
Confidence 887543 367789999999999988876543
No 31
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.82 E-value=6.3e-19 Score=137.86 Aligned_cols=171 Identities=18% Similarity=0.128 Sum_probs=119.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHH
Q psy8013 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHIL 81 (252)
Q Consensus 2 v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (252)
+++.+.+ ||+++++.+|+++|.+.|++|.+++..............+++++.++.... .........+.+++
T Consensus 5 i~~~~~~--gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~------~~~~~~~~~~~~~~ 76 (365)
T cd03807 5 VITGLDV--GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPG------RPDPGALLRLYKLI 76 (365)
T ss_pred EEeeccC--ccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccc------cccHHHHHHHHHHH
Confidence 3455555 999999999999999999999999976433322222335777777765432 12233445677888
Q ss_pred hhCCCcEEEecCchhHHHHHHHHHHHh-cCCcEEEEecCCCCCCc-hhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHh
Q psy8013 82 LREEISIVHGHSAFSALAHETMMIARL-LGLKTVFTDHSLFGFAD-SSAIVTNKCLEISLAGCNHCICVSHIGKENTVLR 159 (252)
Q Consensus 82 ~~~~~Dvvh~~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~-~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~ 159 (252)
++.+||+||++...+.+. ....++. .++|++++.|+...... ........+.+...+.+|.++++|+..++.+ ..
T Consensus 77 ~~~~~div~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~-~~ 153 (365)
T cd03807 77 RRLRPDVVHTWMYHADLY--GGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYH-QA 153 (365)
T ss_pred HhhCCCEEEeccccccHH--HHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHH-HH
Confidence 899999999997654333 3344444 67899999999754321 2223344455666777999999999999876 45
Q ss_pred hccCCCceEEccCCccCCCCCCCc
Q psy8013 160 ARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 160 ~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.+++.+++.++|||+|.+.|.+..
T Consensus 154 ~~~~~~~~~vi~~~~~~~~~~~~~ 177 (365)
T cd03807 154 IGYPPKKIVVIPNGVDTERFSPDL 177 (365)
T ss_pred cCCChhheeEeCCCcCHHhcCCcc
Confidence 577788999999999988776543
No 32
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.82 E-value=8.9e-19 Score=138.60 Aligned_cols=175 Identities=10% Similarity=-0.005 Sum_probs=105.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceee--e--eCCeEEEEeeccccc---------------
Q psy8013 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRY--M--TNGLKVYYCPIKTFY--------------- 62 (252)
Q Consensus 2 v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~--~--~~~~~v~~~~~~~~~--------------- 62 (252)
+...|| .-.|+++.+-+.+|.++||+|++++...+....... . ...-.+..++.....
T Consensus 6 ~~~~~P---~~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (406)
T PRK15427 6 FLLKFP---LSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQTLRG 82 (406)
T ss_pred EeccCC---ccchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhHhhh
Confidence 344554 456999999999999999999999986443221110 0 111223333211000
Q ss_pred --CC--Ccccccccc---h------HHHHHHHhhCCCcEEEecCchhHHHHHHHHHHH--hcCCcEEEEecCCCCCCchh
Q psy8013 63 --NQ--SILPTMVCS---I------PLVRHILLREEISIVHGHSAFSALAHETMMIAR--LLGLKTVFTDHSLFGFADSS 127 (252)
Q Consensus 63 --~~--~~~~~~~~~---~------~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~--~~~~p~v~~~h~~~~~~~~~ 127 (252)
.. .....+... . ..+...+++.+||+||+|....+.. +..++. ..+.|.++|.|+........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~--~~~~~~~~~~~~~~~~t~Hg~d~~~~~~ 160 (406)
T PRK15427 83 IHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVT--AAKLRELGVLRGKIATIFHGIDISSREV 160 (406)
T ss_pred hcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHH--HHHHHHhCCCCCCeEEEEcccccccchh
Confidence 00 000000000 0 1123444677899999999765433 444444 33457789999853221111
Q ss_pred hHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCC
Q psy8013 128 AIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 128 ~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
.......++..++++|.++++|+..++.+ ...+.+.+++.+||||+|.+.|.+.
T Consensus 161 ~~~~~~~~~~~~~~ad~vv~~S~~~~~~l-~~~g~~~~ki~vi~nGvd~~~f~~~ 214 (406)
T PRK15427 161 LNHYTPEYQQLFRRGDLMLPISDLWAGRL-QKMGCPPEKIAVSRMGVDMTRFSPR 214 (406)
T ss_pred hhhhhHHHHHHHHhCCEEEECCHHHHHHH-HHcCCCHHHEEEcCCCCCHHHcCCC
Confidence 11223346677889999999999999876 4568888899999999999988654
No 33
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.80 E-value=5.6e-18 Score=116.66 Aligned_cols=169 Identities=15% Similarity=0.044 Sum_probs=112.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhh
Q psy8013 4 DFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLR 83 (252)
Q Consensus 4 ~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (252)
...|...||.|+++.+|+..|.++|++|+|.|...... .......|+++..+|.........+...+..+....+..+.
T Consensus 10 rGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~-~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~~al~~~~~ 88 (185)
T PF09314_consen 10 RGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYP-YKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLLHALRFIKQ 88 (185)
T ss_pred CCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCC-CCCcccCCeEEEEeCCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 44677899999999999999999999999999874432 22446789999999877543222121222222222222232
Q ss_pred --CCCcEEEecCch-hHHHHHHHHHHHhcCCcEEEEecCCC-CCCchhh---HHHHHHHHHhhcCCCEEEEechhhhhhH
Q psy8013 84 --EEISIVHGHSAF-SALAHETMMIARLLGLKTVFTDHSLF-GFADSSA---IVTNKCLEISLAGCNHCICVSHIGKENT 156 (252)
Q Consensus 84 --~~~Dvvh~~~~~-~~~~~~~~~~~~~~~~p~v~~~h~~~-~~~~~~~---~~~~~~~~~~~~~~d~vi~~S~~~~~~~ 156 (252)
.+.||+|++... +++........+..|.|++++.||.. ...++.. .+.+.-++.+.+.+|.+|+.|+..++.+
T Consensus 89 ~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~y~ 168 (185)
T PF09314_consen 89 DKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQDYI 168 (185)
T ss_pred ccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHH
Confidence 368899999876 33331122223345779999999983 2222222 2222335556677999999999999998
Q ss_pred HHhhccCCCceEEccCCcc
Q psy8013 157 VLRARVNHYNVSVIPNAVD 175 (252)
Q Consensus 157 ~~~~~~~~~~i~vI~ngvd 175 (252)
..+++ ..+..+|++|.|
T Consensus 169 ~~~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 169 KERYG--RKKSTFIAYGAD 185 (185)
T ss_pred HHHcC--CCCcEEecCCCC
Confidence 87776 578899999986
No 34
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.80 E-value=2.2e-18 Score=135.23 Aligned_cols=136 Identities=19% Similarity=0.175 Sum_probs=94.1
Q ss_pred CCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCc
Q psy8013 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEIS 87 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~D 87 (252)
+..||+++++.+++++|.++||+|++++.... .+.+.++..+||
T Consensus 10 ~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~------------------------------------~~~~~~~~~~~d 53 (365)
T cd03825 10 DISGGAARAAYRLHRALQAAGVDSTMLVQEKK------------------------------------ALISKIEIINAD 53 (365)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCceeEEEeecc------------------------------------hhhhChhcccCC
Confidence 45699999999999999999999999997622 233445678999
Q ss_pred EEEecCchhHHHHHHHHHHHh--cCCcEEEEecCCCCCCc----------------------------hhhHHHHHHHHH
Q psy8013 88 IVHGHSAFSALAHETMMIARL--LGLKTVFTDHSLFGFAD----------------------------SSAIVTNKCLEI 137 (252)
Q Consensus 88 vvh~~~~~~~~~~~~~~~~~~--~~~p~v~~~h~~~~~~~----------------------------~~~~~~~~~~~~ 137 (252)
|||+|....... ....... .++|+|++.|+.+.... ......++....
T Consensus 54 iih~~~~~~~~~--~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (365)
T cd03825 54 IVHLHWIHGGFL--SIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKA 131 (365)
T ss_pred EEEEEccccCcc--CHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHH
Confidence 999998543222 2222222 38999999998743210 011111111222
Q ss_pred hhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCC
Q psy8013 138 SLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVP 181 (252)
Q Consensus 138 ~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~ 181 (252)
....++.++++|+..++.+...+.++..++.+||||+|.+.|.+
T Consensus 132 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~ 175 (365)
T cd03825 132 WADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRP 175 (365)
T ss_pred hccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCC
Confidence 22458899999999998765555577789999999999987743
No 35
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.79 E-value=1.6e-18 Score=135.89 Aligned_cols=171 Identities=19% Similarity=0.163 Sum_probs=116.2
Q ss_pred CCCCCCC-CCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 2 VSDFFYP-NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 2 v~~~~~P-~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
++.++.| ..||+++++.+|+++|.+.||+|++++.................. . ......................
T Consensus 5 ~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 5 DARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRL--L--LRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred echhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhcccc--c--cccccccccchhhHHHHHHHHH
Confidence 4667777 799999999999999999999999999875433221111111111 0 0000010111222223334445
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCc------hhhHHHHHHHHHhhcCCCEEEEechhhhh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFAD------SSAIVTNKCLEISLAGCNHCICVSHIGKE 154 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~------~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 154 (252)
+...++|+||++....... +..++|+|+++|+.++... ......+...+..++.+|.++++|+..++
T Consensus 81 ~~~~~~Dii~~~~~~~~~~-------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~ 153 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL-------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKR 153 (365)
T ss_pred hhhcCCCeeeecccccCcc-------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHH
Confidence 5668999999999765431 5578999999999754211 11234455677888899999999999999
Q ss_pred hHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 155 NTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 155 ~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.+...++.+..++.+||||+|.+.+.+..
T Consensus 154 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 182 (365)
T cd03809 154 DLLRYLGVPPDKIVVIPLGVDPRFRPPPA 182 (365)
T ss_pred HHHHHhCcCHHHEEeeccccCccccCCCc
Confidence 88777777788999999999988876643
No 36
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.79 E-value=5.2e-18 Score=133.43 Aligned_cols=160 Identities=15% Similarity=0.151 Sum_probs=106.2
Q ss_pred CCCCC--CC-CCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCC--Cc--ccccccch
Q psy8013 2 VSDFF--YP-NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQ--SI--LPTMVCSI 74 (252)
Q Consensus 2 v~~~~--~P-~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~~~~~~~~ 74 (252)
+|+.| || ..||+|+++.++++.|+ ++|+++|....+....+...+|+.+++++....... .. ........
T Consensus 9 ~~~~~~~p~~~~g~ve~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (380)
T PRK15484 9 VTPIFSIPPRGAAAVETWIYQVAKRTS---IPNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLDPLPYS 85 (380)
T ss_pred eccCCCCCCccccHHHHHHHHhhhhcc---CCeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccCchhHH
Confidence 45555 34 38999999999999994 499999998665333334567788888865443211 00 00112222
Q ss_pred HHHHHHHhh---CCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechh
Q psy8013 75 PLVRHILLR---EEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHI 151 (252)
Q Consensus 75 ~~l~~~~~~---~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~ 151 (252)
..+...+.. .++||||+|+..... ..+..+..+.|+|.+.|+.+. ...+.+++.++++|+.
T Consensus 86 ~~~~~~~~~~~~~~~~vi~v~~~~~~~---~~~~~~~~~~~~v~~~h~~~~-------------~~~~~~~~~ii~~S~~ 149 (380)
T PRK15484 86 QRILNIAHKFTITKDSVIVIHNSMKLY---RQIRERAPQAKLVMHMHNAFE-------------PELLDKNAKIIVPSQF 149 (380)
T ss_pred HHHHHHHHhcCCCCCcEEEEeCcHHhH---HHHHhhCCCCCEEEEEecccC-------------hhHhccCCEEEEcCHH
Confidence 334343433 569999999865422 334455567899999998642 1223468999999999
Q ss_pred hhhhHHHhhccCCCceEEccCCccCCCCCCC
Q psy8013 152 GKENTVLRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 152 ~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
.++.+.. ..+..++.+||||+|.+.|.+.
T Consensus 150 ~~~~~~~--~~~~~~i~vIpngvd~~~~~~~ 178 (380)
T PRK15484 150 LKKFYEE--RLPNADISIVPNGFCLETYQSN 178 (380)
T ss_pred HHHHHHh--hCCCCCEEEecCCCCHHHcCCc
Confidence 9987643 2456789999999998887654
No 37
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.79 E-value=1.2e-17 Score=131.10 Aligned_cols=180 Identities=23% Similarity=0.200 Sum_probs=109.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
++++.|+|..||.++++.+++++|.+.||+|++++.......... ........................+.........
T Consensus 4 ~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (375)
T cd03821 4 HVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLV-ALNGVPVKLFSINVAYGLNLARYLFPPSLLAWLR 82 (375)
T ss_pred EEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchh-hccCceeeecccchhhhhhhhhhccChhHHHHHH
Confidence 367788899999999999999999999999999998644322111 1111101111100000000000111111122233
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCc-----hhhHHHH-HHHHHhhcCCCEEEEechhhhh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFAD-----SSAIVTN-KCLEISLAGCNHCICVSHIGKE 154 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~-----~~~~~~~-~~~~~~~~~~d~vi~~S~~~~~ 154 (252)
....++|+||+|+........+...++..++|++++.|+...... ....+.. ...+..+..++.+++.|+....
T Consensus 83 ~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~ 162 (375)
T cd03821 83 LNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSEQEAA 162 (375)
T ss_pred HhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCHHHHH
Confidence 345689999999855444434566677789999999998753221 1111111 2245566779999999977665
Q ss_pred hHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 155 NTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 155 ~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.. .......++.+||||+|.+.|.+..
T Consensus 163 ~~--~~~~~~~~~~vi~~~~~~~~~~~~~ 189 (375)
T cd03821 163 EI--RRLGLKAPIAVIPNGVDIPPFAALP 189 (375)
T ss_pred HH--HhhCCcccEEEcCCCcChhccCcch
Confidence 53 3344578899999999998887653
No 38
>PLN02939 transferase, transferring glycosyl groups
Probab=99.79 E-value=5.9e-17 Score=135.26 Aligned_cols=182 Identities=18% Similarity=0.215 Sum_probs=110.5
Q ss_pred CCCCCCCC--CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcc------------e--------------eeeeCCeEE
Q psy8013 2 VSDFFYPN--VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG------------I--------------RYMTNGLKV 53 (252)
Q Consensus 2 v~~~~~P~--~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~------------~--------------~~~~~~~~v 53 (252)
|+....|. .||.+-++..|.++|++.||+|.|+++.++.... . ....+|+.+
T Consensus 487 VasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~GV~v 566 (977)
T PLN02939 487 IAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPV 566 (977)
T ss_pred EEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEEEEECCeeE
Confidence 45566674 8999999999999999999999999997642210 0 002245666
Q ss_pred EEeecc----cccCCCcc--cc----cccchHHHHHHHhh--CCCcEEEecCchhHHHHHHHHH--H--HhcCCcEEEEe
Q psy8013 54 YYCPIK----TFYNQSIL--PT----MVCSIPLVRHILLR--EEISIVHGHSAFSALAHETMMI--A--RLLGLKTVFTD 117 (252)
Q Consensus 54 ~~~~~~----~~~~~~~~--~~----~~~~~~~l~~~~~~--~~~Dvvh~~~~~~~~~~~~~~~--~--~~~~~p~v~~~ 117 (252)
+.+... .......+ +. +..+.+....++.. .+|||||+|.|..++....++. + ...++|+|+|+
T Consensus 567 yfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTI 646 (977)
T PLN02939 567 YFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTC 646 (977)
T ss_pred EEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEe
Confidence 655421 11111111 11 11111122234433 6999999999987663111111 1 12457999999
Q ss_pred cCCCCCC--c---h-----h-hHH----------HH--HHHHHhhcCCCEEEEechhhhhhHHHhh--------ccCCCc
Q psy8013 118 HSLFGFA--D---S-----S-AIV----------TN--KCLEISLAGCNHCICVSHIGKENTVLRA--------RVNHYN 166 (252)
Q Consensus 118 h~~~~~~--~---~-----~-~~~----------~~--~~~~~~~~~~d~vi~~S~~~~~~~~~~~--------~~~~~~ 166 (252)
|+.-.-. . . . ..+ .. .+++..+..||.|++||+..++++...+ +...++
T Consensus 647 HNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~K 726 (977)
T PLN02939 647 HNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKK 726 (977)
T ss_pred CCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCC
Confidence 9982110 0 0 0 000 00 1134455569999999999998876532 345678
Q ss_pred eEEccCCccCCCCCCCc
Q psy8013 167 VSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 167 i~vI~ngvd~~~f~~~~ 183 (252)
+.+|+||||.+.|.|..
T Consensus 727 l~gIlNGID~e~wnPat 743 (977)
T PLN02939 727 FVGILNGIDTDTWNPST 743 (977)
T ss_pred ceEEecceehhhcCCcc
Confidence 99999999999998764
No 39
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.79 E-value=1.3e-17 Score=130.74 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=106.0
Q ss_pred CCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcE
Q psy8013 9 NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISI 88 (252)
Q Consensus 9 ~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dv 88 (252)
..||+++++.+|++.|.+.||+|++++........ ..........++.... ....+.....+.+++++.+|||
T Consensus 10 ~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pdi 82 (360)
T cd04951 10 GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVK--PPIDATIILNLNMSKN-----PLSFLLALWKLRKILRQFKPDV 82 (360)
T ss_pred CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCcc--chhhccceEEeccccc-----chhhHHHHHHHHHHHHhcCCCE
Confidence 36999999999999999999999999875332111 1111111112222111 1122334456778888899999
Q ss_pred EEecCchhHHHHHHHHHHH-hcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCce
Q psy8013 89 VHGHSAFSALAHETMMIAR-LLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNV 167 (252)
Q Consensus 89 vh~~~~~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i 167 (252)
||+|...+.+. ..++.+ ..++|++++.|+.... .....+..+.....++.++++|+..++.+.....++.+++
T Consensus 83 v~~~~~~~~~~--~~l~~~~~~~~~~v~~~h~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 156 (360)
T cd04951 83 VHAHMFHANIF--ARLLRLFLPSPPLICTAHSKNEG----GRLRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKS 156 (360)
T ss_pred EEEcccchHHH--HHHHHhhCCCCcEEEEeeccCch----hHHHHHHHHHHhhccCceEEEcHHHHHHHHhccCCCcccE
Confidence 99998765433 333332 3467899999986421 1223333444555588899999999988766655778899
Q ss_pred EEccCCccCCCCCCC
Q psy8013 168 SVIPNAVDTTVFVPD 182 (252)
Q Consensus 168 ~vI~ngvd~~~f~~~ 182 (252)
.+||||+|.+.|.+.
T Consensus 157 ~~i~ng~~~~~~~~~ 171 (360)
T cd04951 157 FVVYNGIDTDRFRKD 171 (360)
T ss_pred EEEccccchhhcCcc
Confidence 999999998877654
No 40
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.78 E-value=3.5e-17 Score=129.03 Aligned_cols=173 Identities=10% Similarity=0.006 Sum_probs=107.5
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCC-cEEEEEeccCCCCcc------------eeee------eCCeEEEEeecccc
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRG-HKVIVLTHSYKDRVG------------IRYM------TNGLKVYYCPIKTF 61 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~------------~~~~------~~~~~v~~~~~~~~ 61 (252)
|+|+.|+|..+|+.+.+..++.+|.++| |+|+|+++..+.... .... ..+-++.+++..+.
T Consensus 9 ivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r~~s~~~ 88 (462)
T PLN02846 9 IFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISFLPKFSI 88 (462)
T ss_pred EEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEEeccccc
Confidence 5899999999999999999999999999 899999986432100 0000 01234555554443
Q ss_pred cCCCc-c---cccccchHHHHHHHhhCCCcEEEecCchhHHHHH--HHHHHHhcCCcEEEEecCCCCCC----c--h-hh
Q psy8013 62 YNQSI-L---PTMVCSIPLVRHILLREEISIVHGHSAFSALAHE--TMMIARLLGLKTVFTDHSLFGFA----D--S-SA 128 (252)
Q Consensus 62 ~~~~~-~---~~~~~~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~----~--~-~~ 128 (252)
..... + .........+.+.++..+|||||++.+.. ++.. +...+++.++ +|.++|..+... . . ..
T Consensus 89 p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~-LG~~~~g~~~~~k~~~-vV~tyHT~y~~Y~~~~~~g~~~~ 166 (462)
T PLN02846 89 KFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEH-LTWYHHGKRWKTKFRL-VIGIVHTNYLEYVKREKNGRVKA 166 (462)
T ss_pred ccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchh-hhhHHHHHHHHhcCCc-EEEEECCChHHHHHHhccchHHH
Confidence 21110 0 11222346788899999999999999876 3322 4455555555 888999964211 0 0 11
Q ss_pred HHHHHHHHHhhc-CCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 129 IVTNKCLEISLA-GCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 129 ~~~~~~~~~~~~-~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.+.+.+.++..+ .+|.++++|....+ +. +.+.+.++|||++.|.+..
T Consensus 167 ~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~-------~~~i~~v~GVd~~~f~~~~ 214 (462)
T PLN02846 167 FLLKYINSWVVDIYCHKVIRLSAATQD-YP-------RSIICNVHGVNPKFLEIGK 214 (462)
T ss_pred HHHHHHHHHHHHHhcCEEEccCHHHHH-Hh-------hCEEecCceechhhcCCCc
Confidence 122222223322 38999999986554 32 2344456899999887653
No 41
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.78 E-value=1.7e-17 Score=137.31 Aligned_cols=174 Identities=18% Similarity=0.227 Sum_probs=111.9
Q ss_pred CCCCcHHHHHHHHHHHH--------HHCCc----EEEEEeccCCCCcc--------eeeeeCCeEEEEeecccccC----
Q psy8013 8 PNVGGVEEHIFNLSQCL--------LQRGH----KVIVLTHSYKDRVG--------IRYMTNGLKVYYCPIKTFYN---- 63 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L--------~~~G~----~V~v~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~---- 63 (252)
|..||...|+.+++++| +++|| +|+|+|...++... .....++++|.++|..+...
T Consensus 276 ~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~ 355 (784)
T TIGR02470 276 PDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYGTEHAWILRVPFRTENGIILR 355 (784)
T ss_pred CCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccccCCCceEEEEecCCCCcccccc
Confidence 34799999999999985 68899 77899986543211 11234789999999776321
Q ss_pred -----CCcccccccchHHHHHHHh---hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCC----c-----h
Q psy8013 64 -----QSILPTMVCSIPLVRHILL---REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFA----D-----S 126 (252)
Q Consensus 64 -----~~~~~~~~~~~~~l~~~~~---~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~----~-----~ 126 (252)
...++.+-.+...+.+.+. ..+||+||+|++.+++. +..+++..|+|.|.|.|+.-... . .
T Consensus 356 ~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glv--a~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~ 433 (784)
T TIGR02470 356 NWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLV--ASLLARKLGVTQCTIAHALEKTKYPDSDIYWQEF 433 (784)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHH--HHHHHHhcCCCEEEECCcchhhcccccccccccc
Confidence 1111122222223333333 24799999999998777 88999999999999999762110 0 0
Q ss_pred --hhHHHHHH--HHHhhcCCCEEEEechhhhhh---HHHhh----------------cc--CCCceEEccCCccCCCCCC
Q psy8013 127 --SAIVTNKC--LEISLAGCNHCICVSHIGKEN---TVLRA----------------RV--NHYNVSVIPNAVDTTVFVP 181 (252)
Q Consensus 127 --~~~~~~~~--~~~~~~~~d~vi~~S~~~~~~---~~~~~----------------~~--~~~~i~vI~ngvd~~~f~~ 181 (252)
...+..++ ...++..||.||+.|...... ....| |+ ...|+.|||+|+|.+.|.|
T Consensus 434 e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P 513 (784)
T TIGR02470 434 EDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFP 513 (784)
T ss_pred hhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCC
Confidence 00111122 336777799999999754221 01111 22 4579999999999998887
Q ss_pred Cc
Q psy8013 182 DV 183 (252)
Q Consensus 182 ~~ 183 (252)
..
T Consensus 514 ~~ 515 (784)
T TIGR02470 514 YS 515 (784)
T ss_pred CC
Confidence 54
No 42
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.76 E-value=1.2e-17 Score=132.75 Aligned_cols=169 Identities=12% Similarity=-0.008 Sum_probs=112.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCccccccc--------chHHHHHHH
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVC--------SIPLVRHIL 81 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~ 81 (252)
.+|.+..+.++++.|+++||+|+|++....+.........|++++.++...... ...+..+. ....+..++
T Consensus 13 ~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (415)
T cd03816 13 DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRL-NKLPFLLFAPLKVLWQFFSLLWLLY 91 (415)
T ss_pred ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 366777779999999999999999998644322221346788888887653101 01111111 112223345
Q ss_pred hhCCCcEEEecCchhHH-HHHHHHHHHhcCCcEEEEecCCCCC--------CchhhHHHHHHHHHhhcCCCEEEEechhh
Q psy8013 82 LREEISIVHGHSAFSAL-AHETMMIARLLGLKTVFTDHSLFGF--------ADSSAIVTNKCLEISLAGCNHCICVSHIG 152 (252)
Q Consensus 82 ~~~~~Dvvh~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~--------~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 152 (252)
+..+||+||+|.+.... ...+..+++..++|+|++.|+.+.. ......+..++.+++++.+|.++++|+.+
T Consensus 92 ~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~ 171 (415)
T cd03816 92 KLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGRLADYNLCVTKAM 171 (415)
T ss_pred hcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhhcCCEeeecCHHH
Confidence 66789999999755422 2235556777899999999986420 11112345566677888899999999999
Q ss_pred hhhHHHhhccCCCceEEccCCccCCCCCC
Q psy8013 153 KENTVLRARVNHYNVSVIPNAVDTTVFVP 181 (252)
Q Consensus 153 ~~~~~~~~~~~~~~i~vI~ngvd~~~f~~ 181 (252)
++.+.. ++.+++++.|||||. .+.|.|
T Consensus 172 ~~~l~~-~~~~~~ki~vI~Ng~-~~~f~p 198 (415)
T cd03816 172 KEDLQQ-FNNWKIRATVLYDRP-PEQFRP 198 (415)
T ss_pred HHHHHh-hhccCCCeeecCCCC-HHHcee
Confidence 998754 788889999999995 455554
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.76 E-value=4.5e-17 Score=127.31 Aligned_cols=172 Identities=23% Similarity=0.247 Sum_probs=110.7
Q ss_pred CCCCCCCCC-CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCc--------ccccc
Q psy8013 1 MVSDFFYPN-VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSI--------LPTMV 71 (252)
Q Consensus 1 ~v~~~~~P~-~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~~~ 71 (252)
++++.|+|. .||.++++.+++++|.+.||+|++++.......... ...+................ .....
T Consensus 4 ~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (359)
T cd03823 4 VVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDK-EVIGVVVYGRPIDEVLRSALPRDLFHLSDYDNP 82 (359)
T ss_pred EEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccc-ccccceeeccccccccCCCchhhhhHHHhccCH
Confidence 467788776 799999999999999999999999998644322211 11222222211000000000 00111
Q ss_pred cchHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechh
Q psy8013 72 CSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHI 151 (252)
Q Consensus 72 ~~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~ 151 (252)
.....+.+++++.+||+||++.... +.......++..++|+|++.|+.+...... .......|.++++|+.
T Consensus 83 ~~~~~~~~~~~~~~~dii~~~~~~~-~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~--------~~~~~~~d~ii~~s~~ 153 (359)
T cd03823 83 AVVAEFARLLEDFRPDVVHFHHLQG-LGVSILRAARDRGIPIVLTLHDYWLICPRQ--------GLFKKGGDAVIAPSRF 153 (359)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccc-hHHHHHHHHHhcCCCEEEEEeeeeeecchh--------hhhccCCCEEEEeCHH
Confidence 2234567788889999999998633 332244556677899999999975332211 1112234999999999
Q ss_pred hhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 152 GKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 152 ~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.++.+. ..+....++.+||||+|.+.+.+..
T Consensus 154 ~~~~~~-~~~~~~~~~~vi~n~~~~~~~~~~~ 184 (359)
T cd03823 154 LLDRYV-ANGLFAEKISVIRNGIDLDRAKRPR 184 (359)
T ss_pred HHHHHH-HcCCCccceEEecCCcChhhccccc
Confidence 998764 4444467999999999998876654
No 44
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.75 E-value=1.3e-16 Score=125.37 Aligned_cols=176 Identities=25% Similarity=0.276 Sum_probs=116.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
++++.|+|..||.++.+.+++++|.+.||+|++++.......... ...++........... .....+.....+...
T Consensus 4 ~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 79 (374)
T cd03817 4 IFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE-EVVVVRPFRVPTFKYP---DFRLPLPIPRALIII 79 (374)
T ss_pred EeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc-ccccccccccccchhh---hhhccccHHHHHHHH
Confidence 468889999999999999999999999999999998644322211 1111111111010000 011122333455566
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCC--------chhhHHHH-HHHHHhhcCCCEEEEechh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFA--------DSSAIVTN-KCLEISLAGCNHCICVSHI 151 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~--------~~~~~~~~-~~~~~~~~~~d~vi~~S~~ 151 (252)
++..+||+||++.+.. ....+..+++..++|+|++.|+.+... ........ .+.+..+..+|.++++|+.
T Consensus 80 ~~~~~~Div~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~ 158 (374)
T cd03817 80 LKELGPDIVHTHTPFS-LGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEK 158 (374)
T ss_pred HhhcCCCEEEECCchh-hhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHH
Confidence 7888999999998754 233356677888999999999874310 01111122 4567788889999999999
Q ss_pred hhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 152 GKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 152 ~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.++.+ ..++. ..++.++|||+|.+.|.+..
T Consensus 159 ~~~~~-~~~~~-~~~~~vi~~~~~~~~~~~~~ 188 (374)
T cd03817 159 IADLL-REYGV-KRPIEVIPTGIDLDRFEPVD 188 (374)
T ss_pred HHHHH-HhcCC-CCceEEcCCccchhccCccc
Confidence 88765 44554 45699999999998877654
No 45
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.75 E-value=1.6e-16 Score=123.41 Aligned_cols=168 Identities=18% Similarity=0.166 Sum_probs=114.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHH
Q psy8013 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHIL 81 (252)
Q Consensus 2 v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (252)
+++.+.| .||.++++.+++++|.+.||+|++++..... ........++.+..++..... .....+.....+.+++
T Consensus 5 ~~~~~~~-~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l 79 (348)
T cd03820 5 VIPSLGN-AGGAERVLSNLANALAEKGHEVTIISLDKGE-PPFYELDPKIKVIDLGDKRDS---KLLARFKKLRRLRKLL 79 (348)
T ss_pred EeccccC-CCChHHHHHHHHHHHHhCCCeEEEEecCCCC-CCccccCCccceeeccccccc---chhccccchHHHHHhh
Confidence 4566666 7999999999999999999999999987543 122223455666655543221 1122344556788888
Q ss_pred hhCCCcEEEecCchhHHHHHHHHHHHhcC-CcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhh
Q psy8013 82 LREEISIVHGHSAFSALAHETMMIARLLG-LKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRA 160 (252)
Q Consensus 82 ~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~-~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~ 160 (252)
+..+||+||++.... . ........+ +|++.+.|+........ .......+..++.+|.++++|+..+. ...
T Consensus 80 ~~~~~d~i~~~~~~~-~---~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~ii~~s~~~~~---~~~ 151 (348)
T cd03820 80 KNNKPDVVISFLTSL-L---TFLASLGLKIVKLIVSEHNSPDAYKKR-LRRLLLRRLLYRRADAVVVLTEEDRA---LYY 151 (348)
T ss_pred cccCCCEEEEcCchH-H---HHHHHHhhccccEEEecCCCccchhhh-hHHHHHHHHHHhcCCEEEEeCHHHHH---Hhh
Confidence 889999999998762 2 222233344 49999999875332211 11122367788899999999999872 333
Q ss_pred ccCCCceEEccCCccCCCCCCC
Q psy8013 161 RVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 161 ~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
.....++.+||||+|.+.+.+.
T Consensus 152 ~~~~~~~~vi~~~~~~~~~~~~ 173 (348)
T cd03820 152 KKFNKNVVVIPNPLPFPPEEPS 173 (348)
T ss_pred ccCCCCeEEecCCcChhhcccc
Confidence 5567899999999998877654
No 46
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.75 E-value=4.5e-17 Score=127.36 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=109.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceee--eeCCeEEEEeecccccCCCcccccccchHHHH
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRY--MTNGLKVYYCPIKTFYNQSILPTMVCSIPLVR 78 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~ 78 (252)
++++.|+|. .++++.++++.|.++||+|+|++........... ...+..+... . .....+.....+.
T Consensus 4 ~~~~~~~~~---~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~ 72 (355)
T cd03799 4 YLVKEFPRL---SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYL-------A-RSLALLAQALVLA 72 (355)
T ss_pred EECCCCCCc---chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHH-------H-HHHHHHHHHHHHH
Confidence 356777543 7899999999999999999999986432221110 0000000000 0 0011122333455
Q ss_pred HHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHH
Q psy8013 79 HILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVL 158 (252)
Q Consensus 79 ~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~ 158 (252)
+.++..++|+||+|....... .....++..++|++++.|+......... ...+..++.+|.++++|+..++.+..
T Consensus 73 ~~~~~~~~Dii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~vi~~s~~~~~~l~~ 147 (355)
T cd03799 73 RELRRLGIDHIHAHFGTTPAT-VAMLASRLGGIPYSFTAHGKDIFRSPDA----IDLDEKLARADFVVAISEYNRQQLIR 147 (355)
T ss_pred HHHHhcCCCEEEECCCCchHH-HHHHHHHhcCCCEEEEEecccccccCch----HHHHHHHhhCCEEEECCHHHHHHHHH
Confidence 666778999999998643222 2445555568999999997532222111 45677788899999999999998766
Q ss_pred hhccCCCceEEccCCccCCCCCCCc
Q psy8013 159 RARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 159 ~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.++.+..++.+||||+|.+.|.+..
T Consensus 148 ~~~~~~~~~~vi~~~~d~~~~~~~~ 172 (355)
T cd03799 148 LLGCDPDKIHVVHCGVDLERFPPRP 172 (355)
T ss_pred hcCCCcccEEEEeCCcCHHHcCCcc
Confidence 5577788999999999988887653
No 47
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.75 E-value=1.4e-16 Score=125.01 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=101.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhC
Q psy8013 5 FFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLRE 84 (252)
Q Consensus 5 ~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (252)
.++|..||+++++.+|+++|.+.||+|++++................ .... ..........+.+.++..
T Consensus 7 ~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~ 75 (366)
T cd03822 7 PYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEV-VRVI----------VLDNPLDYRRAARAIRLS 75 (366)
T ss_pred CCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccc-eeee----------ecCCchhHHHHHHHHhhc
Confidence 45677899999999999999999999999987643222111100000 0000 001122334567778889
Q ss_pred CCcEEEecCchhHH----HHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhh
Q psy8013 85 EISIVHGHSAFSAL----AHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRA 160 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~----~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~ 160 (252)
+||+||++.+.+.+ ........+..++|+|++.|+.... ........+.+..++.+|.++++|....+.+....
T Consensus 76 ~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 153 (366)
T cd03822 76 GPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLH--EPRPGDRALLRLLLRRADAVIVMSSELLRALLLRA 153 (366)
T ss_pred CCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcc--ccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhc
Confidence 99999998743221 1112222344789999999996211 12223445567788889999999733333332222
Q ss_pred ccCCCceEEccCCccCCCCCCC
Q psy8013 161 RVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 161 ~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
..+++.+||||+|...+.+.
T Consensus 154 --~~~~~~~i~~~~~~~~~~~~ 173 (366)
T cd03822 154 --YPEKIAVIPHGVPDPPAEPP 173 (366)
T ss_pred --CCCcEEEeCCCCcCcccCCc
Confidence 14799999999998777654
No 48
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.73 E-value=4.4e-17 Score=129.21 Aligned_cols=171 Identities=18% Similarity=0.095 Sum_probs=102.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCc-ce----eeeeCCeEEEEeeccccc----C--CCcccc-----
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRV-GI----RYMTNGLKVYYCPIKTFY----N--QSILPT----- 69 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~----~~~~~~~~v~~~~~~~~~----~--~~~~~~----- 69 (252)
|||..|| ...+++++++|++. |+|++++...+... .. ....+.+.+..++..... . ....+.
T Consensus 10 ~P~~~G~-~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 87 (397)
T TIGR03087 10 YPPNKGD-KIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTGEPLSLPYY 87 (397)
T ss_pred CCCCCCC-cEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCCCCCcchhh
Confidence 3556555 77899999999876 89999998642211 10 111222333322111000 0 000000
Q ss_pred -cccchHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCC----C----Cch-hhHH-------HH
Q psy8013 70 -MVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFG----F----ADS-SAIV-------TN 132 (252)
Q Consensus 70 -~~~~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~----~----~~~-~~~~-------~~ 132 (252)
.......+.+++++.++|+||++....... ...+..++|.|++.|+... . ... ...+ ..
T Consensus 88 ~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~----~~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
T TIGR03087 88 RSRRLARWVNALLAAEPVDAIVVFSSAMAQY----VTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLL 163 (397)
T ss_pred CCHHHHHHHHHHHhhCCCCEEEEecccccee----ccccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 011233566777889999999997543211 1113458899999998621 0 000 1111 12
Q ss_pred HHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCC
Q psy8013 133 KCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 133 ~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
++.+..++++|.++++|+..++.+....+...+++.+||||||.+.|.+.
T Consensus 164 ~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~ 213 (397)
T TIGR03087 164 AYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPD 213 (397)
T ss_pred HHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCC
Confidence 34567888899999999999988754444556789999999999988764
No 49
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.70 E-value=5.3e-16 Score=123.42 Aligned_cols=169 Identities=15% Similarity=0.157 Sum_probs=103.1
Q ss_pred CCcHHHHHHHHH----HHHHHCCc--------EEEEEeccCCCCccee-----eeeCCeEEEEeeccc---ccCC-----
Q psy8013 10 VGGVEEHIFNLS----QCLLQRGH--------KVIVLTHSYKDRVGIR-----YMTNGLKVYYCPIKT---FYNQ----- 64 (252)
Q Consensus 10 ~GG~~~~~~~l~----~~L~~~G~--------~V~v~~~~~~~~~~~~-----~~~~~~~v~~~~~~~---~~~~----- 64 (252)
.||+|+.+.+++ +.+.+.|- .|+++|.+.......+ ....++.+..+.... ....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (578)
T PRK15490 173 SGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAKITGNLFDDATIESP 252 (578)
T ss_pred CCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeeccchhhhhhccccch
Confidence 699999999554 44444444 6888887532221111 112344443332211 1000
Q ss_pred -------CcccccccchHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEE-EecCCCCCCchhhHHHHH---
Q psy8013 65 -------SILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVF-TDHSLFGFADSSAIVTNK--- 133 (252)
Q Consensus 65 -------~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~-~~h~~~~~~~~~~~~~~~--- 133 (252)
...|-.......+..++++.+|||||+|...+.+. +..+++..++|+++ +.|+.++. .....+...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~--g~laA~lagvpviv~~~h~~~~~-~~~r~~~~e~~~ 329 (578)
T PRK15490 253 ELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLM--IALAALIAGVPRIQLGLRGLPPV-VRKRLFKPEYEP 329 (578)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHH--HHHHHHhcCCCEEEEeecccCCc-chhhHHHHHHHH
Confidence 01112233455778889999999999999776444 77788888999865 57763322 111111111
Q ss_pred HHH--HhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCC
Q psy8013 134 CLE--ISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 134 ~~~--~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
..+ .....+| ++++|..+++.+...++++++++.|||||||++.|.+.
T Consensus 330 ~~~a~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~ 379 (578)
T PRK15490 330 LYQALAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPS 379 (578)
T ss_pred hhhhceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCcc
Confidence 111 1123355 77889888888777778999999999999999888774
No 50
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.70 E-value=8.7e-16 Score=120.30 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=112.3
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCC-cceeeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDR-VGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 2 v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
+++++ ..||+++++.+++++|.+.||+|++++...... ........++.++.++.... ..+.....+.++
T Consensus 5 ~~~~~--~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 75 (358)
T cd03812 5 IVGTM--NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKK-------NPLKYFKKLYKL 75 (358)
T ss_pred EeCCC--CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCc-------cHHHHHHHHHHH
Confidence 34444 679999999999999999999999999864432 11122334666665432211 223334566677
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcE-EEEecCCCCCCchhhH--HHHHHHHHhhcCCCEEEEechhhhhhHH
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKT-VFTDHSLFGFADSSAI--VTNKCLEISLAGCNHCICVSHIGKENTV 157 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~-v~~~h~~~~~~~~~~~--~~~~~~~~~~~~~d~vi~~S~~~~~~~~ 157 (252)
+++.+||+||+|....... ....++..+.|. +++.|+.+........ ....+.+...+.++.++++|+..++.+.
T Consensus 76 ~~~~~~Dvv~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~ 153 (358)
T cd03812 76 IKKNKYDIVHVHGSSASGF--ILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLF 153 (358)
T ss_pred HhcCCCCEEEEeCcchhHH--HHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHH
Confidence 7889999999998764322 444445567665 6788886432221111 1123345566779999999999988764
Q ss_pred HhhccCCCceEEccCCccCCCCCCCc
Q psy8013 158 LRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 158 ~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.. ....++.+||||+|.+.|.+.+
T Consensus 154 ~~--~~~~~~~vi~ngvd~~~~~~~~ 177 (358)
T cd03812 154 GK--VKNKKFKVIPNGIDLEKFIFNE 177 (358)
T ss_pred hC--CCcccEEEEeccCcHHHcCCCc
Confidence 33 5678999999999998776543
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.69 E-value=3.3e-15 Score=116.55 Aligned_cols=169 Identities=18% Similarity=0.123 Sum_probs=115.6
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||.++++.+++++|.+.||+|++++....... .....+++++.++...... .....+.....+.+.+++.+||+|
T Consensus 9 ~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dvv 84 (359)
T cd03808 9 DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE--ELEALGVKVIPIPLDRRGI--NPFKDLKALLRLYRLLRKERPDIV 84 (359)
T ss_pred chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc--ccccCCceEEecccccccc--ChHhHHHHHHHHHHHHHhcCCCEE
Confidence 699999999999999999999999998744322 2345677887776554211 111223344567788888999999
Q ss_pred EecCchhHHHHHHHHHHH-hcCCcEEEEecCCCCCCch---hhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccC-C
Q psy8013 90 HGHSAFSALAHETMMIAR-LLGLKTVFTDHSLFGFADS---SAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVN-H 164 (252)
Q Consensus 90 h~~~~~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~-~ 164 (252)
|++...+.+. ....++ ..+.+++...|+....... .......+.++.++.+|.++++|+..++.+......+ .
T Consensus 85 ~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 162 (359)
T cd03808 85 HTHTPKPGIL--GRLAARLAGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKK 162 (359)
T ss_pred EEccccchhH--HHHHHHHcCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcC
Confidence 9997655433 444444 3456678888876322111 2233445567788889999999999998875444332 4
Q ss_pred CceEEccCCccCCCCCCCcc
Q psy8013 165 YNVSVIPNAVDTTVFVPDVS 184 (252)
Q Consensus 165 ~~i~vI~ngvd~~~f~~~~~ 184 (252)
.++.+++||+|.+.+.+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~ 182 (359)
T cd03808 163 KTVLIPGSGVDLDRFSPSPE 182 (359)
T ss_pred ceEEecCCCCChhhcCcccc
Confidence 67788899999988776543
No 52
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.69 E-value=2e-15 Score=119.82 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=97.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccc--------
Q psy8013 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCS-------- 73 (252)
Q Consensus 2 v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------- 73 (252)
|.+.||+. ..+|+++|.++||+|+++|........ .|+++++++................
T Consensus 5 ~~~~~p~~-------~~~la~~L~~~G~~v~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (396)
T cd03818 5 VHQNFPGQ-------FRHLAPALAAQGHEVVFLTEPNAAPPP-----GGVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQ 72 (396)
T ss_pred ECCCCchh-------HHHHHHHHHHCCCEEEEEecCCCCCCC-----CCeeEEEecCCCCCCCCCCccchhHHHHHHHHH
Confidence 55667644 467999999999999999997543222 1788888875533211111111111
Q ss_pred --hHHHHHH-HhhCCCcEEEecCchhHHHHHHHHHHHh-cCCcEEEEec------CCC-CCC--chh-----hHHHHH--
Q psy8013 74 --IPLVRHI-LLREEISIVHGHSAFSALAHETMMIARL-LGLKTVFTDH------SLF-GFA--DSS-----AIVTNK-- 133 (252)
Q Consensus 74 --~~~l~~~-~~~~~~Dvvh~~~~~~~~~~~~~~~~~~-~~~p~v~~~h------~~~-~~~--~~~-----~~~~~~-- 133 (252)
...+..+ .+..+|||||+|..+.. +..+... .++|+|.+.| +.. .+. ... ..+..+
T Consensus 73 ~~~~~~~~~~~~~~~pdvi~~h~~~~~----~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (396)
T cd03818 73 AVARALLALRAKGFRPDVIVAHPGWGE----TLFLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNA 148 (396)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCccch----hhhHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhh
Confidence 1111222 23458999999986542 2223333 4688887553 321 011 001 111111
Q ss_pred HHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 134 CLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 134 ~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.....+..+|.+|++|+..++.+...+ .+++.|||||+|.+.|.+.+
T Consensus 149 ~~~~~~~~ad~vi~~s~~~~~~~~~~~---~~ki~vI~ngvd~~~f~~~~ 195 (396)
T cd03818 149 LILLALAQADAGVSPTRWQRSTFPAEL---RSRISVIHDGIDTDRLRPDP 195 (396)
T ss_pred HhHHHHHhCCEEECCCHHHHhhCcHhh---ccceEEeCCCccccccCCCc
Confidence 134567889999999999998764333 37999999999999887654
No 53
>PLN00142 sucrose synthase
Probab=99.69 E-value=3.1e-16 Score=130.05 Aligned_cols=174 Identities=14% Similarity=0.173 Sum_probs=109.6
Q ss_pred CCCCcHHHHHHHHH--------HHHHHCCcEEE----EEeccCCCCcc--------eeeeeCCeEEEEeecccccC----
Q psy8013 8 PNVGGVEEHIFNLS--------QCLLQRGHKVI----VLTHSYKDRVG--------IRYMTNGLKVYYCPIKTFYN---- 63 (252)
Q Consensus 8 P~~GG~~~~~~~l~--------~~L~~~G~~V~----v~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~---- 63 (252)
|..||...|+.+++ +.|+++||+|+ |+|...++... .....+++.|.++|..+...
T Consensus 300 ~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~ 379 (815)
T PLN00142 300 PDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRK 379 (815)
T ss_pred CCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCcccccc
Confidence 67899999998655 67778899774 88875433211 11233578999999876311
Q ss_pred ----CCcccccccchHHHHHHH-h--hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCC----C-------c
Q psy8013 64 ----QSILPTMVCSIPLVRHIL-L--REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGF----A-------D 125 (252)
Q Consensus 64 ----~~~~~~~~~~~~~l~~~~-~--~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~----~-------~ 125 (252)
...++.+-.+...+.+.+ . ..+||+||+|++.+++. +..+++..|+|.|.|.|..-.. . .
T Consensus 380 ~i~ke~l~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~v--A~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e 457 (815)
T PLN00142 380 WISRFDVWPYLETFAEDAASEILAELQGKPDLIIGNYSDGNLV--ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFD 457 (815)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHH--HHHHHHHhCCCEEEEcccchhhhccccCCcccccc
Confidence 111112112222333333 2 23699999999998777 8899999999999999976210 0 1
Q ss_pred hhhHHHHHH--HHHhhcCCCEEEEechhhhhhH-------HHh------------hcc--CCCceEEccCCccCCCCCCC
Q psy8013 126 SSAIVTNKC--LEISLAGCNHCICVSHIGKENT-------VLR------------ARV--NHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 126 ~~~~~~~~~--~~~~~~~~d~vi~~S~~~~~~~-------~~~------------~~~--~~~~i~vI~ngvd~~~f~~~ 182 (252)
....+..++ ...++..||.||+.|...+..+ ... .++ ...++.|||+|+|.+.|.|.
T Consensus 458 ~~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~ 537 (815)
T PLN00142 458 DKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPY 537 (815)
T ss_pred hhhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCC
Confidence 111111122 4557778999999997665321 111 022 24589999999999988754
Q ss_pred c
Q psy8013 183 V 183 (252)
Q Consensus 183 ~ 183 (252)
.
T Consensus 538 ~ 538 (815)
T PLN00142 538 T 538 (815)
T ss_pred C
Confidence 3
No 54
>PLN02275 transferase, transferring glycosyl groups
Probab=99.68 E-value=1.7e-15 Score=118.99 Aligned_cols=166 Identities=10% Similarity=0.012 Sum_probs=109.3
Q ss_pred CcHHHHHHHHHHHHHHCCc-EEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCccccccc----------chHHHHH
Q psy8013 11 GGVEEHIFNLSQCLLQRGH-KVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVC----------SIPLVRH 79 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~l~~ 79 (252)
+|.+..+..++..|+++|+ +|++++....+.........++++++++. ...... ....+. .+..+..
T Consensus 15 ~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 92 (371)
T PLN02275 15 FGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ-PRLLQR-LPRVLYALALLLKVAIQFLMLLW 92 (371)
T ss_pred CCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC-cccccc-cccchHHHHHHHHHHHHHHHHHH
Confidence 5667778889999998875 89999986544433333456799999975 211111 111111 1112222
Q ss_pred H--HhhCCCcEEEecCchhHH-HHHHHHHHHhcCCcEEEEecCCCCC--------CchhhHHHHHHHHHhhcCCCEEEEe
Q psy8013 80 I--LLREEISIVHGHSAFSAL-AHETMMIARLLGLKTVFTDHSLFGF--------ADSSAIVTNKCLEISLAGCNHCICV 148 (252)
Q Consensus 80 ~--~~~~~~Dvvh~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~--------~~~~~~~~~~~~~~~~~~~d~vi~~ 148 (252)
. .+..+||+||+|++.+.. ...+..+++..+.|+|++.|+.+.. ......+..++.+++++.+|.++++
T Consensus 93 ~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~ 172 (371)
T PLN02275 93 FLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLCV 172 (371)
T ss_pred HHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEEC
Confidence 2 356899999999755422 2235566777899999999986311 1122235566678888899999999
Q ss_pred chhhhhhHHHhhccCCCceEEccCCccCCCCCCC
Q psy8013 149 SHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 149 S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
|+.+++.+...++++ +.+||||+ .+.|.+.
T Consensus 173 S~~~~~~l~~~~g~~---i~vi~n~~-~~~f~~~ 202 (371)
T PLN02275 173 TKAMQHELDQNWGIR---ATVLYDQP-PEFFRPA 202 (371)
T ss_pred CHHHHHHHHHhcCCC---eEEECCCC-HHHcCcC
Confidence 999999875555653 89999995 4666554
No 55
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.67 E-value=8.7e-16 Score=120.93 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=86.7
Q ss_pred CCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce--ee---eeCCeEEEEeecccccCCCcccccccchH-----HHH
Q psy8013 9 NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI--RY---MTNGLKVYYCPIKTFYNQSILPTMVCSIP-----LVR 78 (252)
Q Consensus 9 ~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~l~ 78 (252)
..||+++++.++++.|.+.||+|++++......... .. ...|..+ .++ ......+. .+.
T Consensus 10 ~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~----------~~~~~~~~~~~~~~~~ 78 (372)
T cd03792 10 YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADI-ELS----------EEEKEIYLEWNEENAE 78 (372)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCC-CCC----------HHHHHHHHHHHHHHhc
Confidence 579999999999999999999999998854321100 00 0011111 111 01001111 111
Q ss_pred HHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHH
Q psy8013 79 HILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVL 158 (252)
Q Consensus 79 ~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~ 158 (252)
+.+...+|||||+|.+.+ .. ...+.+..++|+|++.|+.+.... ....++.++.+.++|.+++.|....
T Consensus 79 ~~~~~~~~Dvv~~h~~~~-~~--~~~~~~~~~~~~i~~~H~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~----- 147 (372)
T cd03792 79 RPLLDLDADVVVIHDPQP-LA--LPLFKKKRGRPWIWRCHIDLSSPN---RRVWDFLQPYIEDYDAAVFHLPEYV----- 147 (372)
T ss_pred cccccCCCCEEEECCCCc-hh--HHHhhhcCCCeEEEEeeeecCCCc---HHHHHHHHHHHHhCCEEeecHHHhc-----
Confidence 123467999999998764 22 222233348999999998753221 1222345677788999998884322
Q ss_pred hhccCCCceEEccCCccCC
Q psy8013 159 RARVNHYNVSVIPNAVDTT 177 (252)
Q Consensus 159 ~~~~~~~~i~vI~ngvd~~ 177 (252)
..+++..++ +||||||..
T Consensus 148 ~~~~~~~~~-vipngvd~~ 165 (372)
T cd03792 148 PPQVPPRKV-IIPPSIDPL 165 (372)
T ss_pred CCCCCCceE-EeCCCCCCC
Confidence 224445556 999999975
No 56
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.67 E-value=4.8e-15 Score=116.07 Aligned_cols=158 Identities=14% Similarity=0.082 Sum_probs=100.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHC--CcEEEEEeccCCCCcceeeeeCCeEEE-EeecccccCCCcccccccchHHHHHHHh
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQR--GHKVIVLTHSYKDRVGIRYMTNGLKVY-YCPIKTFYNQSILPTMVCSIPLVRHILL 82 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (252)
+.|..||+|+++.+++++|.+. |++|++++......... ...+.+. .++..... ..........+.++++
T Consensus 9 ~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~ 81 (359)
T PRK09922 9 AVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAW---LKEIKYAQSFSNIKLS----FLRRAKHVYNFSKWLK 81 (359)
T ss_pred cccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHH---HHhcchhcccccchhh----hhcccHHHHHHHHHHH
Confidence 4566799999999999999999 89999998764321110 0111100 01111000 0011223456778899
Q ss_pred hCCCcEEEecCchhHHHHHHHHHHHhcCCc--EEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhh
Q psy8013 83 REEISIVHGHSAFSALAHETMMIARLLGLK--TVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRA 160 (252)
Q Consensus 83 ~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~ 160 (252)
+.+||+||+|...+.+. +..+++..+.| ++.+.|........ .. ...+..+|.++++|+..++.+ ...
T Consensus 82 ~~~~Dii~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~~~~~~-----~~--~~~~~~~d~~i~~S~~~~~~~-~~~ 151 (359)
T PRK09922 82 ETQPDIVICIDVISCLY--ANKARKKSGKQFKIFSWPHFSLDHKKH-----AE--CKKITCADYHLAISSGIKEQM-MAR 151 (359)
T ss_pred hcCCCEEEEcCHHHHHH--HHHHHHHhCCCCeEEEEecCcccccch-----hh--hhhhhcCCEEEEcCHHHHHHH-HHc
Confidence 99999999998665332 55566666654 45566754211110 01 112367999999999999887 456
Q ss_pred ccCCCceEEccCCccCCCCC
Q psy8013 161 RVNHYNVSVIPNAVDTTVFV 180 (252)
Q Consensus 161 ~~~~~~i~vI~ngvd~~~f~ 180 (252)
+++.+++.+||||+|.+.+.
T Consensus 152 ~~~~~ki~vi~N~id~~~~~ 171 (359)
T PRK09922 152 GISAQRISVIYNPVEIKTII 171 (359)
T ss_pred CCCHHHEEEEcCCCCHHHcc
Confidence 78788999999999966543
No 57
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.67 E-value=1.6e-15 Score=122.78 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=72.0
Q ss_pred CCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCC--------c-----hhhH---HHHHHHHHhhcCCCEEEE
Q psy8013 84 EEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFA--------D-----SSAI---VTNKCLEISLAGCNHCIC 147 (252)
Q Consensus 84 ~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~--------~-----~~~~---~~~~~~~~~~~~~d~vi~ 147 (252)
.++||+|+|.... .+..+..+++..++|+|+|.|+.+... . .... +...+.+..++.||.|++
T Consensus 172 ~~~dviH~~s~~~-~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii~ 250 (475)
T cd03813 172 PKADVYHAVSTGY-AGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRITT 250 (475)
T ss_pred CCCCEEeccCcch-HHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEEe
Confidence 3789999997532 233367778889999999999975311 0 0111 122345667888999999
Q ss_pred echhhhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 148 VSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 148 ~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
+|+..++.. ...+.+++|+.|||||+|.+.|.+..
T Consensus 251 ~s~~~~~~~-~~~g~~~~ki~vIpNgid~~~f~~~~ 285 (475)
T cd03813 251 LYEGNRERQ-IEDGADPEKIRVIPNGIDPERFAPAR 285 (475)
T ss_pred cCHHHHHHH-HHcCCCHHHeEEeCCCcCHHHcCCcc
Confidence 999988754 66788889999999999999887654
No 58
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.66 E-value=6.7e-15 Score=116.79 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=100.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCC-eEEEEeecccccCCCcccc---cccchHHHH-----HH
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNG-LKVYYCPIKTFYNQSILPT---MVCSIPLVR-----HI 80 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~---~~~~~~~l~-----~~ 80 (252)
.||+|+++.+|+++|+++||+|+|+|...+..........+ +.++..+...... .... +......+. ..
T Consensus 12 ~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 89 (392)
T cd03805 12 IGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRS--IFGRFHILCAYLRMLYLALYLLL 89 (392)
T ss_pred CchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcch--hhHhHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999999753322211222232 4454433211110 0010 011111111 13
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCC----CchhhH----HHHHHHHHhhcCCCEEEEechhh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGF----ADSSAI----VTNKCLEISLAGCNHCICVSHIG 152 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~----~~~~~~----~~~~~~~~~~~~~d~vi~~S~~~ 152 (252)
.+..++||||++....... ......+.|+|++.|..... ...... ...++.++.++.+|.++++|+..
T Consensus 90 ~~~~~~Dvi~~~~~~~~~~----~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s~~~ 165 (392)
T cd03805 90 LPDEKYDVFIVDQVSACVP----LLKLFSPSKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMADKIVVNSNFT 165 (392)
T ss_pred cccCCCCEEEEcCcchHHH----HHHHhcCCcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhCceEEEEcChhH
Confidence 4567999999987554322 22222348899999953210 111111 22344567788899999999999
Q ss_pred hhhHHHhhccCCC-ceEEccCCccCCCCCCCc
Q psy8013 153 KENTVLRARVNHY-NVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 153 ~~~~~~~~~~~~~-~i~vI~ngvd~~~f~~~~ 183 (252)
++.+...++.... ++.|||||+|.+.|.+..
T Consensus 166 ~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~ 197 (392)
T cd03805 166 ASVFKKTFPSLAKNPREVVYPCVDTDSFESTS 197 (392)
T ss_pred HHHHHHHhcccccCCcceeCCCcCHHHcCccc
Confidence 9877655543333 346999999998887643
No 59
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.65 E-value=2.8e-15 Score=117.43 Aligned_cols=155 Identities=16% Similarity=0.128 Sum_probs=107.9
Q ss_pred CCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCc------ccccccchHHHHHHHh
Q psy8013 9 NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSI------LPTMVCSIPLVRHILL 82 (252)
Q Consensus 9 ~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~ 82 (252)
..||.+++..+|++.|.++||+|++++..... ........|+++++++......... ....+.....+.++++
T Consensus 10 g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik 88 (357)
T PRK00726 10 GTGGHVFPALALAEELKKRGWEVLYLGTARGM-EARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVLQARKILK 88 (357)
T ss_pred cchHhhhHHHHHHHHHHhCCCEEEEEECCCch-hhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999985421 1112123588888887643221111 1123445556778888
Q ss_pred hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhcc
Q psy8013 83 REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARV 162 (252)
Q Consensus 83 ~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~ 162 (252)
+.+|||||+|.+...+. +..+++..++|+|++.|+.++. ...++.++.+|.+++.++... .. .
T Consensus 89 ~~~pDvv~~~~~~~~~~--~~~~~~~~~~p~v~~~~~~~~~---------~~~r~~~~~~d~ii~~~~~~~----~~--~ 151 (357)
T PRK00726 89 RFKPDVVVGFGGYVSGP--GGLAARLLGIPLVIHEQNAVPG---------LANKLLARFAKKVATAFPGAF----PE--F 151 (357)
T ss_pred hcCCCEEEECCCcchhH--HHHHHHHcCCCEEEEcCCCCcc---------HHHHHHHHHhchheECchhhh----hc--c
Confidence 99999999998655443 5566788899999887764321 223445667999999887432 11 5
Q ss_pred CCCceEEccCCccCCCCCC
Q psy8013 163 NHYNVSVIPNAVDTTVFVP 181 (252)
Q Consensus 163 ~~~~i~vI~ngvd~~~f~~ 181 (252)
+..++.+||||+|.+.+.+
T Consensus 152 ~~~~i~vi~n~v~~~~~~~ 170 (357)
T PRK00726 152 FKPKAVVTGNPVREEILAL 170 (357)
T ss_pred CCCCEEEECCCCChHhhcc
Confidence 6789999999999876654
No 60
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.64 E-value=5.8e-15 Score=114.83 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=111.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCe---EEEEeecccccCCCcccccccchHHHHHHHhhCCC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGL---KVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEI 86 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (252)
.||.++++.+++++|.+.||+|++++.......... ..... ....... ...........+.++++..+|
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 82 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLEL-LPSNVKLIPVRVLKL-------KSLRDLLAILRLRRLLRKEKP 82 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccc-cccchhhhceeeeec-------ccccchhHHHHHHHHHHhcCC
Confidence 699999999999999999999999998644322111 11100 0111000 011223345567888888999
Q ss_pred cEEEecCc-hhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCC
Q psy8013 87 SIVHGHSA-FSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHY 165 (252)
Q Consensus 87 Dvvh~~~~-~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~ 165 (252)
|+||++.. ...+. .....+. ++|+|++.|+.+..............+..+..+|.++++|+..++.+...++.+..
T Consensus 83 dii~~~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 83 DVVISHLTTTPNVL--ALLAARL-GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CEEEEcCccchhHH--HHHHhhc-CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 99999997 33222 3333333 89999999998543222111111356778888999999999999988766666678
Q ss_pred ceEEccCCccCCCCCCCcc
Q psy8013 166 NVSVIPNAVDTTVFVPDVS 184 (252)
Q Consensus 166 ~i~vI~ngvd~~~f~~~~~ 184 (252)
++.+||||+|.+.+.+...
T Consensus 160 ~~~vi~~~~~~~~~~~~~~ 178 (353)
T cd03811 160 KIEVIYNPIDIEEIRALAE 178 (353)
T ss_pred ccEEecCCcChhhcCcccc
Confidence 9999999999988776544
No 61
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=99.62 E-value=2.1e-14 Score=97.04 Aligned_cols=128 Identities=20% Similarity=0.253 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecC
Q psy8013 14 EEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS 93 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~ 93 (252)
+.++.++++.|.+.|++|++++...+. ......+++++++++..... .. ..+. ...+.+++++.+|||||+|.
T Consensus 10 ~~~~~~~~~~L~~~g~~V~ii~~~~~~--~~~~~~~~i~~~~~~~~~k~---~~-~~~~-~~~l~k~ik~~~~DvIh~h~ 82 (139)
T PF13477_consen 10 STFIYNLAKELKKRGYDVHIITPRNDY--EKYEIIEGIKVIRLPSPRKS---PL-NYIK-YFRLRKIIKKEKPDVIHCHT 82 (139)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCCc--hhhhHhCCeEEEEecCCCCc---cH-HHHH-HHHHHHHhccCCCCEEEEec
Confidence 568999999999999999999996432 33335788999998654221 11 2223 45788999999999999999
Q ss_pred chhHHHHHHHHHHHhcC-CcEEEEecCCCCCC-chhhHHHHHHHHHhhcCCCEEEEec
Q psy8013 94 AFSALAHETMMIARLLG-LKTVFTDHSLFGFA-DSSAIVTNKCLEISLAGCNHCICVS 149 (252)
Q Consensus 94 ~~~~~~~~~~~~~~~~~-~p~v~~~h~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~~S 149 (252)
..+. +..+.++++..+ +|+|++.||..-.. .....+.+++.+.+++++|.+++.|
T Consensus 83 ~~~~-~~~~~l~~~~~~~~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 83 PSPY-GLFAMLAKKLLKNKKVIYTVHGSDFYNSSKKKKLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred CChH-HHHHHHHHHHcCCCCEEEEecCCeeecCCchHHHHHHHHHHHHHhCCEEEEcC
Confidence 8652 333667777888 99999999852111 2222256778899999999999976
No 62
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.62 E-value=1.3e-14 Score=113.44 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=107.8
Q ss_pred CCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCccc------ccccchHHHHHHHh
Q psy8013 9 NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILP------TMVCSIPLVRHILL 82 (252)
Q Consensus 9 ~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~ 82 (252)
..||-++++..+++.|.++||+|++++....... ......|+++++++.........+. ..+.....+.++++
T Consensus 8 ~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 86 (350)
T cd03785 8 GTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQARKILK 86 (350)
T ss_pred CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688889999999999999999999988643211 1112356888888765332211111 11233446778888
Q ss_pred hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhcc
Q psy8013 83 REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARV 162 (252)
Q Consensus 83 ~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~ 162 (252)
+.+||+||++.....+. +..+++..++|++++.|+.+. . ...++.+..+|.++++|+..++. .
T Consensus 87 ~~~pDvI~~~~~~~~~~--~~~~a~~~~~p~v~~~~~~~~--~-------~~~~~~~~~~~~vi~~s~~~~~~------~ 149 (350)
T cd03785 87 KFKPDVVVGFGGYVSGP--VGLAAKLLGIPLVIHEQNAVP--G-------LANRLLARFADRVALSFPETAKY------F 149 (350)
T ss_pred hcCCCEEEECCCCcchH--HHHHHHHhCCCEEEEcCCCCc--c-------HHHHHHHHhhCEEEEcchhhhhc------C
Confidence 99999999998655443 566788889999987776432 1 12334555699999999987764 4
Q ss_pred CCCceEEccCCccCCCCCC
Q psy8013 163 NHYNVSVIPNAVDTTVFVP 181 (252)
Q Consensus 163 ~~~~i~vI~ngvd~~~f~~ 181 (252)
+..++.+|+||+|.+.+.+
T Consensus 150 ~~~~~~~i~n~v~~~~~~~ 168 (350)
T cd03785 150 PKDKAVVTGNPVREEILAL 168 (350)
T ss_pred CCCcEEEECCCCchHHhhh
Confidence 5689999999999887654
No 63
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.57 E-value=5.7e-13 Score=106.18 Aligned_cols=174 Identities=13% Similarity=0.099 Sum_probs=107.1
Q ss_pred CCCCCC--CC-cHHHHHHHHHHHHHHC--CcEEEEEeccCCCCc----------ceeeeeCCeEEEEee-cccccCCCcc
Q psy8013 4 DFFYPN--VG-GVEEHIFNLSQCLLQR--GHKVIVLTHSYKDRV----------GIRYMTNGLKVYYCP-IKTFYNQSIL 67 (252)
Q Consensus 4 ~~~~P~--~G-G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~----------~~~~~~~~~~v~~~~-~~~~~~~~~~ 67 (252)
-+|.|. .| |.||.+++.+.+|.+. ||+|+|+|...+... ......+++.+..+. .........+
T Consensus 4 ~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
T cd03806 4 GFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTY 83 (419)
T ss_pred EEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccC
Confidence 467786 44 9999999999999998 899999999765422 112344566655543 2122222223
Q ss_pred cccc---cchHHHH---HHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCC---c-------------
Q psy8013 68 PTMV---CSIPLVR---HILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFA---D------------- 125 (252)
Q Consensus 68 ~~~~---~~~~~l~---~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~---~------------- 125 (252)
++.. .....+. +.+.+.+|||+..+...+.. ...+....++|+|+.+| |+.. .
T Consensus 84 ~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~---~~~~~~~~~~~~i~y~h--~P~~~~d~l~~~~~~~~~~~~ 158 (419)
T cd03806 84 PRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFT---YPLVRLLGGCPVGAYVH--YPTISTDMLQKVRSREASYNN 158 (419)
T ss_pred CceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccH---HHHHHHhcCCeEEEEec--CCcchHHHHHHHhhccccccC
Confidence 3211 2222222 22234589998888754422 11222234889999999 3310 0
Q ss_pred -----------hhhHHH----HHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 126 -----------SSAIVT----NKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 126 -----------~~~~~~----~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
..+.++ .+++++.++.+|.++++|++.++.+...++. .+++.|||||+|.+.|.+.+
T Consensus 159 ~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~-~~~~~vi~~gvd~~~~~~~~ 230 (419)
T cd03806 159 SATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKR-NTKPSIVYPPCDVEELLKLP 230 (419)
T ss_pred ccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCc-CCCcEEEcCCCCHHHhcccc
Confidence 101111 1245667788999999999999987554443 35899999999998876543
No 64
>PLN02949 transferase, transferring glycosyl groups
Probab=99.50 E-value=1.9e-12 Score=103.75 Aligned_cols=170 Identities=17% Similarity=0.139 Sum_probs=91.6
Q ss_pred CCCCC---CCcHHHHHHHHHHHHHHCCc--EEEEEeccCCCCcce----eeeeCCe------EEEEeecccccCCCcccc
Q psy8013 5 FFYPN---VGGVEEHIFNLSQCLLQRGH--KVIVLTHSYKDRVGI----RYMTNGL------KVYYCPIKTFYNQSILPT 69 (252)
Q Consensus 5 ~~~P~---~GG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~----~~~~~~~------~v~~~~~~~~~~~~~~~~ 69 (252)
+|.|. .||.||.+.+.+.+|.+.|+ +|.|+|...+..... ....-++ .++.+..........++.
T Consensus 38 f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~~~~~~~~~ 117 (463)
T PLN02949 38 FFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKWIEEETYPR 117 (463)
T ss_pred EECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEeccccccccccCCc
Confidence 56775 35999999999999999998 777777653221111 0011222 222221111112222222
Q ss_pred --cc-cchHH---HHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCC-------------------
Q psy8013 70 --MV-CSIPL---VRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFA------------------- 124 (252)
Q Consensus 70 --~~-~~~~~---l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~------------------- 124 (252)
++ ..+.. ..+.+.+..|| |++.+...++ ...+++..++|+++++|-.....
T Consensus 118 ~t~~~~~~~~~~l~~~~~~~~~p~-v~vDt~~~~~---~~pl~~~~~~~v~~yvH~p~~~~dm~~~v~~~~~~~~~~~~~ 193 (463)
T PLN02949 118 FTMIGQSLGSVYLAWEALCKFTPL-YFFDTSGYAF---TYPLARLFGCKVVCYTHYPTISSDMISRVRDRSSMYNNDASI 193 (463)
T ss_pred eehHHHHHHHHHHHHHHHHhcCCC-EEEeCCCccc---HHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcccccCccchh
Confidence 11 11111 12223334565 4444432212 22234456899999999542110
Q ss_pred ------chhhHHHHH----HHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCC
Q psy8013 125 ------DSSAIVTNK----CLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVF 179 (252)
Q Consensus 125 ------~~~~~~~~~----~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f 179 (252)
...+.++++ +++...+.+|.++++|+++++.+....+. +.++.+||||+|.+.+
T Consensus 194 a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~-~~~i~vvyp~vd~~~~ 257 (463)
T PLN02949 194 ARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRI-PERIKRVYPPCDTSGL 257 (463)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCC-CCCeEEEcCCCCHHHc
Confidence 011111222 23444577999999999999887544443 4688999999987655
No 65
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.50 E-value=4e-13 Score=104.97 Aligned_cols=149 Identities=16% Similarity=0.230 Sum_probs=97.8
Q ss_pred CcHHHHH---HHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCc---c---cccccchHHHHHHH
Q psy8013 11 GGVEEHI---FNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSI---L---PTMVCSIPLVRHIL 81 (252)
Q Consensus 11 GG~~~~~---~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~---~~~~~~~~~l~~~~ 81 (252)
||.+.++ .+|+++|.++||+|++++..... ........|++++.++......... + ...+.....+.+++
T Consensus 8 g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~-~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i 86 (348)
T TIGR01133 8 GGTGGHIFPALAVAEELIKRGVEVLWLGTKRGL-EKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQARRIL 86 (348)
T ss_pred CccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcc-hhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444 58999999999999999864321 1111123678888887654221111 0 11233455677889
Q ss_pred hhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhc
Q psy8013 82 LREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRAR 161 (252)
Q Consensus 82 ~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~ 161 (252)
++.+||+||++.....+. +..+++..++|+|++.++... ....++.++.+|.++++|+.+++.+
T Consensus 87 ~~~~pDvVi~~~~~~~~~--~~~~~~~~~~p~v~~~~~~~~---------~~~~~~~~~~~d~ii~~~~~~~~~~----- 150 (348)
T TIGR01133 87 KKFKPDAVIGFGGYVSGP--AGLAAKLLGIPLFHHEQNAVP---------GLTNKLLSRFAKKVLISFPGAKDHF----- 150 (348)
T ss_pred HhcCCCEEEEcCCcccHH--HHHHHHHcCCCEEEECCCCCc---------cHHHHHHHHHhCeeEECchhHhhcC-----
Confidence 999999999998655333 555677789999865554221 1223556677999999999887653
Q ss_pred cCCCceEEccCCccCCCCC
Q psy8013 162 VNHYNVSVIPNAVDTTVFV 180 (252)
Q Consensus 162 ~~~~~i~vI~ngvd~~~f~ 180 (252)
+..+|+||+|...+.
T Consensus 151 ----~~~~i~n~v~~~~~~ 165 (348)
T TIGR01133 151 ----EAVLVGNPVRQEIRS 165 (348)
T ss_pred ----CceEEcCCcCHHHhc
Confidence 337999999876554
No 66
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=99.46 E-value=3e-13 Score=99.59 Aligned_cols=158 Identities=23% Similarity=0.316 Sum_probs=92.8
Q ss_pred CCCCCCCC--CCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce-----------------------------eeeeC
Q psy8013 1 MVSDFFYP--NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI-----------------------------RYMTN 49 (252)
Q Consensus 1 ~v~~~~~P--~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-----------------------------~~~~~ 49 (252)
+||..++| ..||.+.++..|+++|+++||+|.|+++..+..... ....+
T Consensus 4 ~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~ 83 (245)
T PF08323_consen 4 MVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGVWYEVRVYRYPVD 83 (245)
T ss_dssp EE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE----EEEEEEEET
T ss_pred EEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEeccccccccccccceEEEEEEEEcC
Confidence 46788889 599999999999999999999999999965211100 00135
Q ss_pred CeEEEEeecccccC-CCcc-------cc----cccchHHHHHHHhh--CCCcEEEecCchhHHHHHHHHHHHhc------
Q psy8013 50 GLKVYYCPIKTFYN-QSIL-------PT----MVCSIPLVRHILLR--EEISIVHGHSAFSALAHETMMIARLL------ 109 (252)
Q Consensus 50 ~~~v~~~~~~~~~~-~~~~-------~~----~~~~~~~l~~~~~~--~~~Dvvh~~~~~~~~~~~~~~~~~~~------ 109 (252)
|++++.+....... ...+ .. ...+.+....+++. .+|||||+|.|.+.+. +..+....
T Consensus 84 ~v~v~~i~~~~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~--p~~lk~~~~~~~~~ 161 (245)
T PF08323_consen 84 GVPVYFIDNPEYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALA--PLYLKERYQQDPFF 161 (245)
T ss_dssp TEEEEEEESHHHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTH--HHHHHHCCSS----
T ss_pred CccEEEecChhhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHH--HHHhcccccccccc
Confidence 66666665433211 1111 11 11112233344554 5899999999998765 44444433
Q ss_pred -CCcEEEEecCCCCC-----Cc-----hhhHH-----------HHHHHHHhhcCCCEEEEechhhhhhHHHhh
Q psy8013 110 -GLKTVFTDHSLFGF-----AD-----SSAIV-----------TNKCLEISLAGCNHCICVSHIGKENTVLRA 160 (252)
Q Consensus 110 -~~p~v~~~h~~~~~-----~~-----~~~~~-----------~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~ 160 (252)
++|+|+|+|+..-. .. ..... .-.+++..+..||.|++||+..++++....
T Consensus 162 ~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~~~in~lk~gi~~AD~v~TVS~~Ya~Ei~~~~ 234 (245)
T PF08323_consen 162 ANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFYGQINFLKAGIVYADKVTTVSPTYAREIQTPE 234 (245)
T ss_dssp --SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEETTEEEHHHHHHHHSSEEEESSHHHHHHTTSHH
T ss_pred ccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccccccccCHHHHHHHhcCEeeeCCHHHHHHHhCcc
Confidence 59999999996210 00 00000 001356777789999999999998875443
No 67
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=9e-12 Score=98.95 Aligned_cols=182 Identities=20% Similarity=0.159 Sum_probs=107.7
Q ss_pred CCCCCCC--CCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcc---ee-------e---------------e-eCCeEE
Q psy8013 2 VSDFFYP--NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG---IR-------Y---------------M-TNGLKV 53 (252)
Q Consensus 2 v~~~~~P--~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~---~~-------~---------------~-~~~~~v 53 (252)
++..+.| ..||.+-++..|.++|.+.|++|.|+.+..+.-.. .. . . ..++++
T Consensus 6 v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 85 (487)
T COG0297 6 VASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKDGGVDL 85 (487)
T ss_pred eeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeecccCCCcE
Confidence 3555666 48999999999999999999999999987642110 00 0 0 000222
Q ss_pred EEeecccccCC---C--cccccc----cchHHHHHHHhh----CCCcEEEecCchhHHHHHHHHHHH----hcCCcEEEE
Q psy8013 54 YYCPIKTFYNQ---S--ILPTMV----CSIPLVRHILLR----EEISIVHGHSAFSALAHETMMIAR----LLGLKTVFT 116 (252)
Q Consensus 54 ~~~~~~~~~~~---~--~~~~~~----~~~~~l~~~~~~----~~~Dvvh~~~~~~~~~~~~~~~~~----~~~~p~v~~ 116 (252)
+-+......++ . ...... .+.......+.. ..|||||+|.|...+. ...++. ...+|.|+|
T Consensus 86 ~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~--~~~lk~~~~~~~~i~tVfT 163 (487)
T COG0297 86 YLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLL--PAYLKQRYRSGYIIPTVFT 163 (487)
T ss_pred EEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHH--HHHHhhcccccccCCeEEE
Confidence 22221111111 0 000000 001111122322 3699999999998765 555555 457899999
Q ss_pred ecCCC--CCCc--------hhhHHHH----------HHHHHhhcCCCEEEEechhhhhhHHHh-hc--------cCCCce
Q psy8013 117 DHSLF--GFAD--------SSAIVTN----------KCLEISLAGCNHCICVSHIGKENTVLR-AR--------VNHYNV 167 (252)
Q Consensus 117 ~h~~~--~~~~--------~~~~~~~----------~~~~~~~~~~d~vi~~S~~~~~~~~~~-~~--------~~~~~i 167 (252)
+|+.. +... +....+. .+++..+..||.|.+||....+++... ++ ....++
T Consensus 164 IHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l 243 (487)
T COG0297 164 IHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKL 243 (487)
T ss_pred EeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhccccE
Confidence 99872 1111 0001111 345667778999999999988876511 11 123678
Q ss_pred EEccCCccCCCCCCCccc
Q psy8013 168 SVIPNAVDTTVFVPDVSR 185 (252)
Q Consensus 168 ~vI~ngvd~~~f~~~~~~ 185 (252)
+-|.||+|.+.+.|....
T Consensus 244 ~GI~NgiD~~~wnp~~d~ 261 (487)
T COG0297 244 SGILNGIDYDLWNPETDP 261 (487)
T ss_pred EEEEeeEEecccCccccc
Confidence 999999999988877553
No 68
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.40 E-value=6.1e-12 Score=100.74 Aligned_cols=97 Identities=15% Similarity=0.084 Sum_probs=71.1
Q ss_pred hCCCcEEEecCchhHHHHHHHHHH-HhcCCcEEEEecCCCCCC----c---hh--------------h--HHHHHHHHHh
Q psy8013 83 REEISIVHGHSAFSALAHETMMIA-RLLGLKTVFTDHSLFGFA----D---SS--------------A--IVTNKCLEIS 138 (252)
Q Consensus 83 ~~~~Dvvh~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~----~---~~--------------~--~~~~~~~~~~ 138 (252)
..++||+|+|.|..+.+ +..+. +..++|+|+|.|...... . .. . .-...+++.+
T Consensus 146 ~~~~dViH~HeWm~g~a--~~~lK~~~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~a 223 (590)
T cd03793 146 DEPAVVAHFHEWQAGVG--LPLLRKRKVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAA 223 (590)
T ss_pred CCCCeEEEEcchhHhHH--HHHHHHhCCCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHH
Confidence 35799999999998775 44444 556889999999873111 0 00 0 0111235566
Q ss_pred hcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 139 LAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 139 ~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
...||++++||+.++++....++.++++ |||||+|++.|.+..
T Consensus 224 a~~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPNGid~~~f~~~~ 266 (590)
T cd03793 224 AHCAHVFTTVSEITAYEAEHLLKRKPDV--VLPNGLNVKKFSALH 266 (590)
T ss_pred HhhCCEEEECChHHHHHHHHHhCCCCCE--EeCCCcchhhcccch
Confidence 6679999999999999987777887777 999999999987654
No 69
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=99.35 E-value=8.6e-12 Score=73.22 Aligned_cols=85 Identities=71% Similarity=1.195 Sum_probs=76.9
Q ss_pred CCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecC
Q psy8013 40 DRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHS 119 (252)
Q Consensus 40 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 119 (252)
+....+...+|++|+.+|.....+...+|..+..++.++.++.++++||||.|...+.+...+.+.++..|++.|+|-|+
T Consensus 5 ~R~GvRyltngLKVYYlP~~~~~~~~t~Pt~~~~~pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfTDHS 84 (90)
T PF08288_consen 5 DRVGVRYLTNGLKVYYLPLKVFYNQCTLPTLFGSFPLLRNILIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVFTDHS 84 (90)
T ss_pred CcceeEEcCCCeEEEeecchhhhcCcchHHHHHhhHHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEeeccc
Confidence 45556778899999999999998888999999999999999999999999999999888888999999999999999999
Q ss_pred CCCCC
Q psy8013 120 LFGFA 124 (252)
Q Consensus 120 ~~~~~ 124 (252)
.+++.
T Consensus 85 Lfgfa 89 (90)
T PF08288_consen 85 LFGFA 89 (90)
T ss_pred ccccC
Confidence 87654
No 70
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.32 E-value=7.3e-11 Score=93.98 Aligned_cols=179 Identities=12% Similarity=0.037 Sum_probs=104.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeee--eCCeEEEEeecccccCCCc--------cc--
Q psy8013 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYM--TNGLKVYYCPIKTFYNQSI--------LP-- 68 (252)
Q Consensus 1 ~v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~--------~~-- 68 (252)
++|+.|| .|-.|.++.+-.+.|.+.+.+|+|+............. ..++.+..++......... .+
T Consensus 4 l~t~~~p--~~~~~~f~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 81 (407)
T cd04946 4 LLTNTFP--GAKGESFIEPEIKYLSKSFDKIIILPTNVGKEREKVRPNGVSNIIISNYRQDKSRAKLIFLALSVFSLPFY 81 (407)
T ss_pred EEecCCC--CCCcccccHHHHHHHHhcCCEEEEEecccccccccCCCccccceEEeecccchhhHHHHHHHHHhhhHHHH
Confidence 4677786 45578899999999999999999987653322111111 1144444433111000000 00
Q ss_pred -------c-------cc-cchHHHHHH----------H----hhCCCcEEEecCchhHHHHHHHHHHHhcCCc-EEEEec
Q psy8013 69 -------T-------MV-CSIPLVRHI----------L----LREEISIVHGHSAFSALAHETMMIARLLGLK-TVFTDH 118 (252)
Q Consensus 69 -------~-------~~-~~~~~l~~~----------~----~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p-~v~~~h 118 (252)
. .+ .......+. + ...++|++|++..... ...+..+.+..+.+ +|.+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~sy~~~~~-~~~~~~l~~~~~~~~~i~~~H 160 (407)
T cd04946 82 KELLKKLKRRRKNIKYFLLLLYFIKRSILLKLKYLHLLIYNSIDGQGTVFYSYWLHET-AYALALLKKEYLRKRVISRAH 160 (407)
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCceEEEEecCchH-HHHHHHHHHhcCCceEEEEec
Confidence 0 00 000000000 1 2346788888764432 22244455555655 899999
Q ss_pred CCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCC
Q psy8013 119 SLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
+..............+.+.+++.+|.++++|+..++.+...++...+++.++|||+|.+.+.+.
T Consensus 161 g~d~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~ 224 (407)
T cd04946 161 GYDLYEDRYPSGYIPLRRYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISK 224 (407)
T ss_pred cchhhhhhccccchHHHHHHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccccCC
Confidence 8532211111122234556678899999999999998877778778899999999998776554
No 71
>PHA01630 putative group 1 glycosyl transferase
Probab=99.21 E-value=1e-09 Score=84.59 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=52.0
Q ss_pred HHhcCCcEEEEecCCCCCCchhhHHHHHHHHHh-hcCCCEEEEechhhhhhHHHhhccC-CCceEEccCCccCCCCCCC
Q psy8013 106 ARLLGLKTVFTDHSLFGFADSSAIVTNKCLEIS-LAGCNHCICVSHIGKENTVLRARVN-HYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 106 ~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~S~~~~~~~~~~~~~~-~~~i~vI~ngvd~~~f~~~ 182 (252)
....|.|+|++.|+.. .+...+..+. .+++|.++++|+.+++.+ ...+++ ++++.+||||||.+.|.+.
T Consensus 65 ~~~~~~~~v~e~~~~~-------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l-~~~g~~~~~~i~vIpNGVd~~~f~~~ 135 (331)
T PHA01630 65 IPHVGKNIVFEVADTD-------AISHTALYFFRNQPVDEIVVPSQWSKNAF-YTSGLKIPQPIYVIPHNLNPRMFEYK 135 (331)
T ss_pred ccccCCceEEEEEeec-------hhhHHHHHHHhhccCCEEEECCHHHHHHH-HHcCCCCCCCEEEECCCCCHHHcCCC
Confidence 3446889999999831 3334455566 677999999999999886 445554 5689999999999888654
No 72
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.20 E-value=1.5e-09 Score=85.59 Aligned_cols=164 Identities=15% Similarity=0.041 Sum_probs=91.9
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCC-----Ccccc-cccchHHHHHHHh--
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQ-----SILPT-MVCSIPLVRHILL-- 82 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~-- 82 (252)
++.-+...+|+..|+++||.|..+..............+..++..-........ ...+. .......+...+.
T Consensus 16 ~~~~~~~qhl~~~~a~~~~~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (373)
T cd04950 16 DFLWQRPQHLAARLAERGNRVLYVEPPGLSRTPQPRGRDWVRVVLRLRAALRRPRRLDPLIPARRRRLLRLLLNALLFWA 95 (373)
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEeCCCccCCCCCCCcccEEeeecccccccCccccCccccchhhhHHHHHHHHHHHHH
Confidence 445567788999999899999988775320111111122222221110000000 00000 0011112222211
Q ss_pred ----hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHH
Q psy8013 83 ----REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVL 158 (252)
Q Consensus 83 ----~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~ 158 (252)
..+..|+.++.+.. ...+....+.++|+.++|.+.............++.+++++|.|+++|+.+++.+ .
T Consensus 96 ~~~~~~~~~i~~~~~P~~-----~~~~~~~~~~~~Vyd~~D~~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~l~~~~-~ 169 (373)
T cd04950 96 QLELGFGRPILWYYTPYT-----LPVAALLQASLVVYDCVDDLSAFPGGPPELLEAERRLLKRADLVFTTSPSLYEAK-R 169 (373)
T ss_pred HHhcCCCCcEEEEeCccH-----HHHHhhcCCCeEEEEcccchhccCCCCHHHHHHHHHHHHhCCEEEECCHHHHHHH-h
Confidence 33455666665543 2223335678899999997643322222222567888999999999999999765 3
Q ss_pred hhccCCCceEEccCCccCCCCCCCc
Q psy8013 159 RARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 159 ~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
..+ .++.+||||+|.+.|.+..
T Consensus 170 ~~~---~~i~~i~ngvd~~~f~~~~ 191 (373)
T cd04950 170 RLN---PNVVLVPNGVDYEHFAAAR 191 (373)
T ss_pred hCC---CCEEEcccccCHHHhhccc
Confidence 443 7899999999999887643
No 73
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.09 E-value=6.8e-10 Score=86.93 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=92.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCC
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREE 85 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (252)
+.+..||+|+.+.+|++.|.+. +|..+........... ....+....+...+.... ...........+.+.+...+
T Consensus 8 ~~~~~GG~E~~~~~l~~~l~~~--~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 83 (351)
T cd03804 8 WLVNIGGGEKVVEALARLFPDA--DIFTLVDDPDKLPRLL-RLKKIRTSFIQKLPFARR-RYRKYLPLMPLAIEQFDLSG 83 (351)
T ss_pred ccccCCCHHHHHHHHHHhCCCC--CEEEEeecCCccchhh-cCCceeechhhhchhhHh-hHhhhCchhhHHHHhccccC
Confidence 3455699999999999998642 3333322211111100 111122222211111110 11122223333445566779
Q ss_pred CcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCC----CCC-------ch--------hhHHHHHHHHHhhcCCCEEE
Q psy8013 86 ISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLF----GFA-------DS--------SAIVTNKCLEISLAGCNHCI 146 (252)
Q Consensus 86 ~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~----~~~-------~~--------~~~~~~~~~~~~~~~~d~vi 146 (252)
+|+||++....... +....++|.+.++|+.. ... .. .....+.+.+..++++|.++
T Consensus 84 ~D~v~~~~~~~~~~-----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 158 (351)
T cd03804 84 YDLVISSSHAVAKG-----VITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSAARVDYFI 158 (351)
T ss_pred CCEEEEcCcHHhcc-----ccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999987543221 12456788899988741 110 00 01122233456678899999
Q ss_pred EechhhhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 147 CVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 147 ~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
++|+.+++.+...++ .+..+|+||+|.+.|.+..
T Consensus 159 ~~S~~~~~~~~~~~~---~~~~vi~~~~d~~~~~~~~ 192 (351)
T cd03804 159 ANSRFVARRIKKYYG---RDATVIYPPVDTDRFTPAE 192 (351)
T ss_pred ECCHHHHHHHHHHhC---CCcEEECCCCCHhhcCcCC
Confidence 999999998754443 3568999999999887654
No 74
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.09 E-value=1.7e-08 Score=82.85 Aligned_cols=167 Identities=10% Similarity=0.046 Sum_probs=97.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHC-CcEEEEEeccCCCCcceeee---------------------------eCCeEE
Q psy8013 2 VSDFFYPNVGGVEEHIFNLSQCLLQR-GHKVIVLTHSYKDRVGIRYM---------------------------TNGLKV 53 (252)
Q Consensus 2 v~~~~~P~~GG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~---------------------------~~~~~v 53 (252)
||.--.|=..|....-+--|-.|++. |++|+++.+-.... ..... ..++++
T Consensus 328 vTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~-dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~~~~~i 406 (794)
T PLN02501 328 VTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKS-DQELVYPNNLTFSSPEEQESYIRNWLEERIGFKADFKI 406 (794)
T ss_pred EEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCcc-ccccccCCCcccCCHHHHHHHHHHHHHHhcCCCCCceE
Confidence 34444566677766666667788877 79999998743211 11101 112333
Q ss_pred EEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecCchhHHHHH--HHHHHHhcCCcEEEEecCCCCCC------c
Q psy8013 54 YYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHE--TMMIARLLGLKTVFTDHSLFGFA------D 125 (252)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~------~ 125 (252)
...|...... ...+...-.+.+.+...+|||||++.+.. ++.. +..+++..+ |+|.++|+.+... .
T Consensus 407 ~fYpg~~~~~----~~SI~p~gdI~~~L~~f~PDVVHLatP~~-LGw~~~Glr~ArKl~-PVVasyHTny~eYl~~y~~g 480 (794)
T PLN02501 407 SFYPGKFSKE----RRSIIPAGDTSQFIPSKDADIAILEEPEH-LNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNG 480 (794)
T ss_pred EeecchhccC----CccccchHHHHHHhhccCCCEEEECCchh-hccHHHHHHHHHHcC-CeEEEEeCCcHHHHhHhcch
Confidence 3333221110 11122345678888999999999999876 4444 667888888 8999999986411 1
Q ss_pred hhhHHHHHHHHHhhcC--CCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 126 SSAIVTNKCLEISLAG--CNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~--~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
....+..+++.+.+.. ||.|+++|..+++ + +...+..| ||||++.|.|..
T Consensus 481 ~L~~~llk~l~~~v~r~hcD~VIaPS~atq~-L------~~~vI~nV-nGVDte~F~P~~ 532 (794)
T PLN02501 481 ALQAFFVKHINNWVTRAYCHKVLRLSAATQD-L------PKSVICNV-HGVNPKFLKIGE 532 (794)
T ss_pred hHHHHHHHHHHHHHHHhhCCEEEcCCHHHHH-h------cccceeec-ccccccccCCcc
Confidence 1111111122233333 8999999977663 2 12223323 799999998764
No 75
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.06 E-value=4.9e-09 Score=84.23 Aligned_cols=147 Identities=14% Similarity=0.032 Sum_probs=93.5
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEE--EeccCCCCc-ceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIV--LTHSYKDRV-GIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEI 86 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v--~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (252)
..|-...+..|+++|.++++++.| .+.+..+.. ......+++.+..+|.. ....+.++++..+|
T Consensus 59 s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d-------------~~~~~~~~l~~~~P 125 (425)
T PRK05749 59 SVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYD-------------LPGAVRRFLRFWRP 125 (425)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCC-------------cHHHHHHHHHhhCC
Confidence 447778999999999988765443 222211111 11111234555555432 12467888999999
Q ss_pred cEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCc
Q psy8013 87 SIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYN 166 (252)
Q Consensus 87 Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~ 166 (252)
|++|++....... ....++..++|++++.|..............++.++.++.+|.|+++|+..++.+ ...|++++
T Consensus 126 d~v~~~~~~~~~~--~l~~~~~~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l-~~~g~~~~- 201 (425)
T PRK05749 126 KLVIIMETELWPN--LIAELKRRGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERF-LALGAKNE- 201 (425)
T ss_pred CEEEEEecchhHH--HHHHHHHCCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHH-HHcCCCCC-
Confidence 9999885432112 3344677899998876654222111122344567788889999999999999886 55677666
Q ss_pred eEEccCC
Q psy8013 167 VSVIPNA 173 (252)
Q Consensus 167 i~vI~ng 173 (252)
+.+++|+
T Consensus 202 i~vi~n~ 208 (425)
T PRK05749 202 VTVTGNL 208 (425)
T ss_pred cEecccc
Confidence 9999995
No 76
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=99.05 E-value=1.1e-08 Score=80.14 Aligned_cols=190 Identities=16% Similarity=0.204 Sum_probs=102.9
Q ss_pred CCCCcHHHHHHHHHHHHHHC--------Cc----EEEEEeccCCCC---c-----ceeeeeCCeEEEEeecccccC---C
Q psy8013 8 PNVGGVEEHIFNLSQCLLQR--------GH----KVIVLTHSYKDR---V-----GIRYMTNGLKVYYCPIKTFYN---Q 64 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L~~~--------G~----~V~v~~~~~~~~---~-----~~~~~~~~~~v~~~~~~~~~~---~ 64 (252)
|..||.-.|+.+++++|.+. |- +|.++|.--++. . .......+..|.|+|+....+ .
T Consensus 293 pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~k 372 (550)
T PF00862_consen 293 PDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRK 372 (550)
T ss_dssp TTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S
T ss_pred CCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhh
Confidence 88999999999999999753 33 477777532221 1 111234678999999887421 1
Q ss_pred -----CcccccccchHHHH-HHHh--hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCC----CCCch------
Q psy8013 65 -----SILPTMVCSIPLVR-HILL--REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLF----GFADS------ 126 (252)
Q Consensus 65 -----~~~~~~~~~~~~l~-~~~~--~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~----~~~~~------ 126 (252)
..+|.+-.+..... .+.. ...||+||.|+...++. +.+++...|+|.+.+-|..- ..++.
T Consensus 373 wisrf~lWPyLe~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlv--A~LLs~~lgv~~~~iaHsLek~Ky~~s~~~w~e~e 450 (550)
T PF00862_consen 373 WISRFDLWPYLEEFADDAEREILAELQGKPDLIIGNYSDGNLV--ASLLSRKLGVTQCFIAHSLEKTKYEDSDLYWKEIE 450 (550)
T ss_dssp ---GGG-GGGHHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHH--HHHHHHHHT-EEEEE-SS-HHHHHHTTTTTSHHHH
T ss_pred ccchhhchhhHHHHHHHHHHHHHHHhCCCCcEEEeccCcchHH--HHHHHhhcCCceehhhhccccccccccCCCHHHHH
Confidence 11222212222222 2222 36899999999888777 88999999999999999871 11111
Q ss_pred -hhHHHHHH--HHHhhcCCCEEEEechhhhhh-------HHHh------------hcc--CCCceEEccCCccCCCCCCC
Q psy8013 127 -SAIVTNKC--LEISLAGCNHCICVSHIGKEN-------TVLR------------ARV--NHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 127 -~~~~~~~~--~~~~~~~~d~vi~~S~~~~~~-------~~~~------------~~~--~~~~i~vI~ngvd~~~f~~~ 182 (252)
...+..++ ...++..||.||+-+...... +... .|+ =..|..+|+.|+|.+.|.|-
T Consensus 451 ~~Yhfs~qftAd~iamn~adfIItST~QEI~g~~~~~gqyes~~~ftlpgLyrvv~Gi~vFdPkfNiv~PGad~~iyFpy 530 (550)
T PF00862_consen 451 EKYHFSCQFTADLIAMNAADFIITSTYQEIAGQKDTVGQYESHKAFTLPGLYRVVNGIDVFDPKFNIVSPGADESIYFPY 530 (550)
T ss_dssp HHH-HHHHHHHHHHHHHHSSEEEESSHHHHHB-SSSBHTTGGGSSEEETTTEEEEES--TT-TTEEE------TTTS--T
T ss_pred hhccchhhhhHHHHHhhcCCEEEEcchHhhcCCccccCCccchhhcchHhHHhhhccccccCCcccccCCCCCcceecCC
Confidence 11223333 345677799999987644332 1000 011 13688899999999999888
Q ss_pred ccccccchhHHHHHHHH
Q psy8013 183 VSRRSHNETLIAGIESA 199 (252)
Q Consensus 183 ~~~~~~~~~~~~~l~~~ 199 (252)
...+.....+...|++.
T Consensus 531 t~~~~Rl~~~~~~ie~L 547 (550)
T PF00862_consen 531 TEKERRLTSLHPEIEEL 547 (550)
T ss_dssp T-TTTS-GGGHHHHHHH
T ss_pred ccccccchhhhHHHHHH
Confidence 77666655555555544
No 77
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.87 E-value=3.3e-09 Score=83.96 Aligned_cols=153 Identities=13% Similarity=0.074 Sum_probs=91.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcc--eeee--------eCCeEEEEeec---ccccCCCccc-ccccchH
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG--IRYM--------TNGLKVYYCPI---KTFYNQSILP-TMVCSIP 75 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--~~~~--------~~~~~v~~~~~---~~~~~~~~~~-~~~~~~~ 75 (252)
.||-...+..++++|.++|++|.+++.......+ .... ...-.++.+.. .......... .......
T Consensus 15 G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (380)
T PRK13609 15 GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIYDKKIFSWYANFGRK 94 (380)
T ss_pred CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccchHHHHHHHHHHHH
Confidence 4588999999999999999987777664321110 0000 00000000000 0000000000 0111235
Q ss_pred HHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhh
Q psy8013 76 LVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKEN 155 (252)
Q Consensus 76 ~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~ 155 (252)
.+.+++++.+||+||++.+...+. ....+...++|++...++.... ..++++++|.++++|+..++.
T Consensus 95 ~l~~~l~~~~pD~Vi~~~~~~~~~--~~~~~~~~~ip~~~~~td~~~~-----------~~~~~~~ad~i~~~s~~~~~~ 161 (380)
T PRK13609 95 RLKLLLQAEKPDIVINTFPIIAVP--ELKKQTGISIPTYNVLTDFCLH-----------KIWVHREVDRYFVATDHVKKV 161 (380)
T ss_pred HHHHHHHHhCcCEEEEcChHHHHH--HHHHhcCCCCCeEEEeCCCCCC-----------cccccCCCCEEEECCHHHHHH
Confidence 678889999999999987655333 3344455678987665553111 124567899999999999987
Q ss_pred HHHhhccCCCceEEccCCccC
Q psy8013 156 TVLRARVNHYNVSVIPNAVDT 176 (252)
Q Consensus 156 ~~~~~~~~~~~i~vI~ngvd~ 176 (252)
+ ...+++++++.+++|+++.
T Consensus 162 l-~~~gi~~~ki~v~G~p~~~ 181 (380)
T PRK13609 162 L-VDIGVPPEQVVETGIPIRS 181 (380)
T ss_pred H-HHcCCChhHEEEECcccCh
Confidence 6 5678888899998777653
No 78
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.86 E-value=2.7e-08 Score=72.73 Aligned_cols=84 Identities=35% Similarity=0.494 Sum_probs=65.6
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHH
Q psy8013 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHIL 81 (252)
Q Consensus 2 v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (252)
++..++|..||.+++...|++.|.+.||+|++++ .....+.+.+
T Consensus 4 i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~------------------------------------~~~~~~~~~~ 47 (229)
T cd01635 4 VSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA------------------------------------LLLLLLLRIL 47 (229)
T ss_pred eccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE------------------------------------echHHHHHHH
Confidence 5667778789999999999999999999999998 0112345556
Q ss_pred hhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCC
Q psy8013 82 LREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFG 122 (252)
Q Consensus 82 ~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~ 122 (252)
++.+||+||++.+...... .....+..++|++++.|+.+.
T Consensus 48 ~~~~~D~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~h~~~~ 87 (229)
T cd01635 48 RGFKPDVVHAHGYYPAPLA-LLLAARLLGIPLVLTVHGVNR 87 (229)
T ss_pred hhcCCCEEEEcCCCcHHHH-HHHHHhhCCCCEEEEEcCccH
Confidence 6789999999997764431 124566779999999999865
No 79
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.83 E-value=2.1e-07 Score=72.30 Aligned_cols=100 Identities=13% Similarity=-0.127 Sum_probs=68.3
Q ss_pred HHHHHHhhCCC-cEEEecCchhHH---HHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechh
Q psy8013 76 LVRHILLREEI-SIVHGHSAFSAL---AHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHI 151 (252)
Q Consensus 76 ~l~~~~~~~~~-Dvvh~~~~~~~~---~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~ 151 (252)
.+.+++...++ |+||++++.... ........+..++|+|+++|+.++..........+..++.++++|.++++|+.
T Consensus 54 ~~~~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~~~~~~~~~~~~~~~aD~iI~~S~~ 133 (333)
T PRK09814 54 RLDGILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFDSNYYLMKEEIDMLNLADVLIVHSKK 133 (333)
T ss_pred HHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhccccchhhHHHHHHHHhCCEEEECCHH
Confidence 45556676777 999999864421 11122223344899999999987542211111245578889999999999999
Q ss_pred hhhhHHHhhccCCCceEEccCCccC
Q psy8013 152 GKENTVLRARVNHYNVSVIPNAVDT 176 (252)
Q Consensus 152 ~~~~~~~~~~~~~~~i~vI~ngvd~ 176 (252)
+++.+ ...+++..++.++++..+.
T Consensus 134 ~~~~l-~~~g~~~~~i~~~~~~~~~ 157 (333)
T PRK09814 134 MKDRL-VEEGLTTDKIIVQGIFDYL 157 (333)
T ss_pred HHHHH-HHcCCCcCceEeccccccc
Confidence 99987 4567777788888876654
No 80
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.80 E-value=2.8e-08 Score=78.21 Aligned_cols=154 Identities=13% Similarity=0.084 Sum_probs=90.3
Q ss_pred HHHHHHHHHHC-CcEEEEEeccCCC--Ccce--eee--eCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 17 IFNLSQCLLQR-GHKVIVLTHSYKD--RVGI--RYM--TNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 17 ~~~l~~~L~~~-G~~V~v~~~~~~~--~~~~--~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
+.-+.++|.+. |+++.++.+.... .... ... ..+..+ .+...... .............+.+.+++.+||+|
T Consensus 15 ~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~-~l~~~~~~-~~~~~~~~~~~~~l~~~l~~~~pDvV 92 (363)
T cd03786 15 LAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDY-DLLLGSDS-QSLGAQTAGLLIGLEAVLLEEKPDLV 92 (363)
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCE-EEecCCCC-CCHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 45577888876 8999977764211 1100 000 111111 22221110 11111223334567777888899999
Q ss_pred EecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEE
Q psy8013 90 HGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSV 169 (252)
Q Consensus 90 h~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~v 169 (252)
|+|+... ....+..+++..++|++.+.|+.......... ........+.+|.++++|+..++.+ ...|++++++.+
T Consensus 93 ~~~g~~~-~~~~~~~aa~~~~iPvv~~~~g~~s~~~~~~~--~~~r~~~~~~ad~~~~~s~~~~~~l-~~~G~~~~kI~v 168 (363)
T cd03786 93 LVLGDTN-ETLAAALAAFKLGIPVAHVEAGLRSFDRGMPD--EENRHAIDKLSDLHFAPTEEARRNL-LQEGEPPERIFV 168 (363)
T ss_pred EEeCCch-HHHHHHHHHHHcCCCEEEEecccccCCCCCCc--hHHHHHHHHHhhhccCCCHHHHHHH-HHcCCCcccEEE
Confidence 9997543 23336777888899998877764321111100 0111124456899999999999876 567899999999
Q ss_pred ccCCc-cC
Q psy8013 170 IPNAV-DT 176 (252)
Q Consensus 170 I~ngv-d~ 176 (252)
++|++ |.
T Consensus 169 ign~v~d~ 176 (363)
T cd03786 169 VGNTMIDA 176 (363)
T ss_pred ECchHHHH
Confidence 99995 54
No 81
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.76 E-value=3.4e-08 Score=77.77 Aligned_cols=100 Identities=15% Similarity=0.075 Sum_probs=69.5
Q ss_pred cchHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhc-CCCEEEEech
Q psy8013 72 CSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLA-GCNHCICVSH 150 (252)
Q Consensus 72 ~~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~-~~d~vi~~S~ 150 (252)
.....+.+++++.+||+||+|+... ..+.+..+++..++|++.+.++....... ..+.....+.+.. .+|.++++|+
T Consensus 73 ~~~~~l~~~l~~~~pDiv~~~gd~~-~~la~a~aa~~~~ipv~h~~~g~~s~~~~-~~~~~~~~r~~~~~~ad~~~~~s~ 150 (365)
T TIGR00236 73 NMLEGLEELLLEEKPDIVLVQGDTT-TTLAGALAAFYLQIPVGHVEAGLRTGDRY-SPMPEEINRQLTGHIADLHFAPTE 150 (365)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCch-HHHHHHHHHHHhCCCEEEEeCCCCcCCCC-CCCccHHHHHHHHHHHHhccCCCH
Confidence 3456788889999999999997533 22237788888999998766554221111 0011122233333 3899999999
Q ss_pred hhhhhHHHhhccCCCceEEccCCc
Q psy8013 151 IGKENTVLRARVNHYNVSVIPNAV 174 (252)
Q Consensus 151 ~~~~~~~~~~~~~~~~i~vI~ngv 174 (252)
..++.+. ..|++++++.+++||+
T Consensus 151 ~~~~~l~-~~G~~~~~I~vign~~ 173 (365)
T TIGR00236 151 QAKDNLL-RENVKADSIFVTGNTV 173 (365)
T ss_pred HHHHHHH-HcCCCcccEEEeCChH
Confidence 9999874 5689899999999996
No 82
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.69 E-value=8.8e-07 Score=72.27 Aligned_cols=98 Identities=12% Similarity=-0.021 Sum_probs=60.8
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCc---hhhHHHHHHHHH---hhcCCCEEEEechhhhh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFAD---SSAIVTNKCLEI---SLAGCNHCICVSHIGKE 154 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~---~~~~~~~~~~~~---~~~~~d~vi~~S~~~~~ 154 (252)
+...++||+|++.+.... ........++|.++++|+..-... ....+....++. ..+.+|.+|++|+..++
T Consensus 207 L~~~~~di~i~dr~~~~~---~~~~~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~ 283 (500)
T TIGR02918 207 LNLTKKDIIILDRSTGIG---QAVLENKGPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQ 283 (500)
T ss_pred HhCCCCCEEEEcCCcccc---hHHHhcCCCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHH
Confidence 345689999998755322 223344557899999997531111 111112222222 34558999999999888
Q ss_pred hHHHhhc---cCCCceEEccCCccCCCCCC
Q psy8013 155 NTVLRAR---VNHYNVSVIPNAVDTTVFVP 181 (252)
Q Consensus 155 ~~~~~~~---~~~~~i~vI~ngvd~~~f~~ 181 (252)
.+...++ ....++.+||||++.+.+.+
T Consensus 284 ~l~~~~~~~~~~~~ki~viP~g~~~~~~~~ 313 (500)
T TIGR02918 284 ILKNQFKKYYNIEPRIYTIPVGSLDELQYP 313 (500)
T ss_pred HHHHHhhhhcCCCCcEEEEcCCCcccccCc
Confidence 7654432 34678999999987655544
No 83
>KOG2941|consensus
Probab=98.69 E-value=6.1e-07 Score=67.12 Aligned_cols=155 Identities=12% Similarity=0.093 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCc--c----cccccchHHHHHHHhhCCCcEE
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSI--L----PTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.+..-|..|++.|++|+++....+.+...-...+.++++.++..+...... . ..++.+...+..++-...+|++
T Consensus 28 RMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~~~~~~p~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~i 107 (444)
T KOG2941|consen 28 RMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLPFLQGGPRVLFLPLKVFWQFLSLLWALFVLRPPDII 107 (444)
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCcccCCCchhhhhHHHHHHHHHHHHHHHHhccCCcEE
Confidence 356668889999999999998755444433457889999988776432210 0 0112223334445556799999
Q ss_pred EecCchhHHHH-HHHHHHHhcCCcEEEEecCC-CC--------CCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHh
Q psy8013 90 HGHSAFSALAH-ETMMIARLLGLKTVFTDHSL-FG--------FADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLR 159 (252)
Q Consensus 90 h~~~~~~~~~~-~~~~~~~~~~~p~v~~~h~~-~~--------~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~ 159 (252)
..+++.+...+ .+.++....|.++++.-|+. +. .......+.+++++..-+.||.-+|||+++++++.+.
T Consensus 108 lvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qn 187 (444)
T KOG2941|consen 108 LVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGKLADYNLCVTKAMREDLIQN 187 (444)
T ss_pred EEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhcccccchhhHHHHHHHHHHh
Confidence 99997654332 35566677899999999986 11 1112223455556666667999999999999998888
Q ss_pred hccCCCceEEccC
Q psy8013 160 ARVNHYNVSVIPN 172 (252)
Q Consensus 160 ~~~~~~~i~vI~n 172 (252)
.|+. +..|+|.
T Consensus 188 Wgi~--ra~v~YD 198 (444)
T KOG2941|consen 188 WGIN--RAKVLYD 198 (444)
T ss_pred cCCc--eeEEEec
Confidence 8863 5556654
No 84
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.58 E-value=4.7e-06 Score=65.16 Aligned_cols=151 Identities=9% Similarity=0.050 Sum_probs=90.8
Q ss_pred CcHHHH---HHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcc------cccccchHHHHHHH
Q psy8013 11 GGVEEH---IFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSIL------PTMVCSIPLVRHIL 81 (252)
Q Consensus 11 GG~~~~---~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~~~~l~~~~ 81 (252)
||.+-+ ...++++|.++||+|.+++...+-.. ......|+.++.++.....+...+ ..+........+++
T Consensus 9 GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~-~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 87 (352)
T PRK12446 9 GGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK-TIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAYVRI 87 (352)
T ss_pred CCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc-ccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 455544 46789999999999999987533211 111234666666664332211111 01122333556778
Q ss_pred hhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhc
Q psy8013 82 LREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRAR 161 (252)
Q Consensus 82 ~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~ 161 (252)
++.+||+||+++....+. +.++++..++|++++..+... .. ..+.+.+.++.+.+.=+... .+
T Consensus 88 ~~~kPdvvi~~Ggy~s~p--~~~aa~~~~~p~~i~e~n~~~--g~-------~nr~~~~~a~~v~~~f~~~~------~~ 150 (352)
T PRK12446 88 RKLKPDVIFSKGGFVSVP--VVIGGWLNRVPVLLHESDMTP--GL-------ANKIALRFASKIFVTFEEAA------KH 150 (352)
T ss_pred HhcCCCEEEecCchhhHH--HHHHHHHcCCCEEEECCCCCc--cH-------HHHHHHHhhCEEEEEccchh------hh
Confidence 999999999998765554 778899999998776665421 11 12334445777665433222 13
Q ss_pred cCCCceEEccCCccCCCC
Q psy8013 162 VNHYNVSVIPNAVDTTVF 179 (252)
Q Consensus 162 ~~~~~i~vI~ngvd~~~f 179 (252)
++.+++.++.|.|..+..
T Consensus 151 ~~~~k~~~tG~Pvr~~~~ 168 (352)
T PRK12446 151 LPKEKVIYTGSPVREEVL 168 (352)
T ss_pred CCCCCeEEECCcCCcccc
Confidence 445788888888866543
No 85
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=98.56 E-value=1.3e-06 Score=60.00 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=80.6
Q ss_pred HCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccc----------hHHHHHHHh-hCCCcEEEecCc
Q psy8013 26 QRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCS----------IPLVRHILL-REEISIVHGHSA 94 (252)
Q Consensus 26 ~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~-~~~~Dvvh~~~~ 94 (252)
+.||+|..+|....... .+|+++..+...........+..... ...+.++.+ ...||||.+|..
T Consensus 1 q~gh~v~fl~~~~~~~~-----~~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~G 75 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI-----PPGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPG 75 (171)
T ss_pred CCCCEEEEEecCCCCCC-----CCCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCC
Confidence 36999999996533222 16888887765332222221111110 112222222 357899999986
Q ss_pred hhHHHHHHHHHHHhc-CCcEEEEe----cCC---CCCC-----chhhH----HHHHHHHHhhcCCCEEEEechhhhhhHH
Q psy8013 95 FSALAHETMMIARLL-GLKTVFTD----HSL---FGFA-----DSSAI----VTNKCLEISLAGCNHCICVSHIGKENTV 157 (252)
Q Consensus 95 ~~~~~~~~~~~~~~~-~~p~v~~~----h~~---~~~~-----~~~~~----~~~~~~~~~~~~~d~vi~~S~~~~~~~~ 157 (252)
+.. .+.+.... ++|+|... |.. ..+. ..... .++......+..||..++.|++.++.+-
T Consensus 76 WGe----~Lflkdv~P~a~li~Y~E~~y~~~g~d~~FDpe~p~~~~~~~~~r~rN~~~l~~l~~~D~~isPT~wQ~~~fP 151 (171)
T PF12000_consen 76 WGE----TLFLKDVFPDAPLIGYFEFYYRASGADVGFDPEFPPSLDDRARLRMRNAHNLLALEQADAGISPTRWQRSQFP 151 (171)
T ss_pred cch----hhhHHHhCCCCcEEEEEEEEecCCCCcCCCCCCCCCCHHHHHHHHHHhHHHHHHHHhCCcCcCCCHHHHHhCC
Confidence 653 23344444 77876522 111 1111 11111 1122234556679999999999998765
Q ss_pred HhhccCCCceEEccCCccCCCCC
Q psy8013 158 LRARVNHYNVSVIPNAVDTTVFV 180 (252)
Q Consensus 158 ~~~~~~~~~i~vI~ngvd~~~f~ 180 (252)
..+ .+||.||+-|||++.++
T Consensus 152 ~~~---r~kI~VihdGiDt~~~r 171 (171)
T PF12000_consen 152 AEF---RSKISVIHDGIDTDRFR 171 (171)
T ss_pred HHH---HcCcEEeecccchhhcC
Confidence 444 47999999999998763
No 86
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.50 E-value=7.7e-07 Score=70.34 Aligned_cols=95 Identities=11% Similarity=-0.027 Sum_probs=61.2
Q ss_pred hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCch------hhHHHHHHHHHhhcCCCEEEEechhhhhhH
Q psy8013 83 REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADS------SAIVTNKCLEISLAGCNHCICVSHIGKENT 156 (252)
Q Consensus 83 ~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~------~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~ 156 (252)
..++|+++++....... .........+.+.++|+....... ...+.+. ....+.++|.++++|+..++.+
T Consensus 97 ~~~~diii~~~~~~~~~---~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~ii~~s~~~~~~l 172 (372)
T cd04949 97 DTKPDVFILDRPTLDGQ---ALLNMKKAAKVVVVLHSNHVSDNNDPVHSLINNFYEY-VFENLDKVDGVIVATEQQKQDL 172 (372)
T ss_pred CCCCCEEEECCccccch---hHHhccCCceEEEEEChHHhCCcccccccccchhhHH-HHhChhhCCEEEEccHHHHHHH
Confidence 37899999998665321 223333456778889975321111 1111112 2234567999999999999887
Q ss_pred HHhhccCCCceEEccCCccCCCCCCC
Q psy8013 157 VLRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 157 ~~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
...++. ..++.+||||++.+.+.+.
T Consensus 173 ~~~~~~-~~~v~~ip~g~~~~~~~~~ 197 (372)
T cd04949 173 QKQFGN-YNPIYTIPVGSIDPLKLPA 197 (372)
T ss_pred HHHhCC-CCceEEEcccccChhhccc
Confidence 666554 3459999999998877664
No 87
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.48 E-value=9e-07 Score=70.18 Aligned_cols=95 Identities=11% Similarity=0.023 Sum_probs=65.5
Q ss_pred HHHHHHHhhCCCcEEEecCchhH-HHH-HHHHHH--HhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEech
Q psy8013 75 PLVRHILLREEISIVHGHSAFSA-LAH-ETMMIA--RLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSH 150 (252)
Q Consensus 75 ~~l~~~~~~~~~Dvvh~~~~~~~-~~~-~~~~~~--~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~ 150 (252)
..+.+++++.+||+||++.++.. ... ...... ...++|++.++.|.+.. . ..|..+.+|.++++|+
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~---~-------~~w~~~~~d~~~~~s~ 159 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTC---H-------PTWFHKGVTRCFCPSE 159 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCc---C-------cccccCCCCEEEECCH
Confidence 45678889999999999765421 110 011111 13478988877775311 0 2355678999999999
Q ss_pred hhhhhHHHhhccCCCceEEccCCccCCCCC
Q psy8013 151 IGKENTVLRARVNHYNVSVIPNAVDTTVFV 180 (252)
Q Consensus 151 ~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~ 180 (252)
.+++.+ ...|++++++.++++++|.+.+.
T Consensus 160 ~~~~~l-~~~g~~~~ki~v~g~~v~~~f~~ 188 (382)
T PLN02605 160 EVAKRA-LKRGLEPSQIRVYGLPIRPSFAR 188 (382)
T ss_pred HHHHHH-HHcCCCHHHEEEECcccCHhhcc
Confidence 999876 56689889999999999876543
No 88
>KOG1387|consensus
Probab=98.43 E-value=4e-05 Score=57.75 Aligned_cols=171 Identities=12% Similarity=0.107 Sum_probs=96.6
Q ss_pred CCCCCC---CCcHHHHHHHHHHHHHHC--CcEEEEEeccCCCCc-----------ceeeeeCCeEEEEeecccccCCCcc
Q psy8013 4 DFFYPN---VGGVEEHIFNLSQCLLQR--GHKVIVLTHSYKDRV-----------GIRYMTNGLKVYYCPIKTFYNQSIL 67 (252)
Q Consensus 4 ~~~~P~---~GG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~ 67 (252)
.+|.|. .||.|++.+.-.+.+.+. .+...|++.+.+-.. ......+++..+.+..........+
T Consensus 47 gfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVea~~~ 126 (465)
T KOG1387|consen 47 GFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVEASTW 126 (465)
T ss_pred EEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeeecccc
Confidence 467775 789999999999999876 344444454422110 1112334555555544332222222
Q ss_pred ccc---ccch---HHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCC------------C---ch
Q psy8013 68 PTM---VCSI---PLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGF------------A---DS 126 (252)
Q Consensus 68 ~~~---~~~~---~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~------------~---~~ 126 (252)
+.. ...+ ..--..+-+..|||.+=....+ +. ....++..++|++...|-.--. . .+
T Consensus 127 ~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~-fs--~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~ 203 (465)
T KOG1387|consen 127 KHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYP-FS--YPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVW 203 (465)
T ss_pred cceehHHHHHHHHHHHHHHHHhCCchheEecCCCc-ch--hHHHHHHccCceEEEEecccccHHHHHHHHhhhhcchhhh
Confidence 211 1111 1112334567999976554433 22 3334557899999999965211 0 11
Q ss_pred hhHHH----HHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCC
Q psy8013 127 SAIVT----NKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVF 179 (252)
Q Consensus 127 ~~~~~----~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f 179 (252)
.+..+ ..++.++-..+|.+++.|.+..+++.+--+ ..++.+||.+.+.+..
T Consensus 204 ~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~--~~~~~iVyPPC~~e~l 258 (465)
T KOG1387|consen 204 GKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQ--SNTCSIVYPPCSTEDL 258 (465)
T ss_pred HHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhh--ccceeEEcCCCCHHHH
Confidence 11122 223455666799999999999998754433 4788899988877643
No 89
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=1.6e-05 Score=61.83 Aligned_cols=152 Identities=20% Similarity=0.181 Sum_probs=97.3
Q ss_pred CcHHHHHHHHHHHHHHCCcE-EEEEeccCCCCcceeeeeCCeEEEEeecccccCCCccc------ccccchHHHHHHHhh
Q psy8013 11 GGVEEHIFNLSQCLLQRGHK-VIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILP------TMVCSIPLVRHILLR 83 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~ 83 (252)
||=-.-...++++|.++|++ |.++.... +.........+++++.++.........+. ..+......++++++
T Consensus 11 GGHv~pAlAl~~~l~~~g~~~v~~~~~~~-~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~ 89 (357)
T COG0707 11 GGHVFPALALAEELAKRGWEQVIVLGTGD-GLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQARKILKK 89 (357)
T ss_pred ccchhHHHHHHHHHHhhCccEEEEecccc-cceeeeccccCceEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445678899999999996 55543321 11222223347888888877655443322 223344566788999
Q ss_pred CCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccC
Q psy8013 84 EEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVN 163 (252)
Q Consensus 84 ~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~ 163 (252)
.+||+|...+.+.... +.++++..++|++.+..+.... ...++..+.++.|.+.-+. ...+.+
T Consensus 90 ~kPd~vig~Ggyvs~P--~~~Aa~~~~iPv~ihEqn~~~G---------~ank~~~~~a~~V~~~f~~------~~~~~~ 152 (357)
T COG0707 90 LKPDVVIGTGGYVSGP--VGIAAKLLGIPVIIHEQNAVPG---------LANKILSKFAKKVASAFPK------LEAGVK 152 (357)
T ss_pred cCCCEEEecCCccccH--HHHHHHhCCCCEEEEecCCCcc---------hhHHHhHHhhceeeecccc------ccccCC
Confidence 9999999988776555 7788899999999988886322 1123344446655554333 122455
Q ss_pred CCceEEccCCccCCCCC
Q psy8013 164 HYNVSVIPNAVDTTVFV 180 (252)
Q Consensus 164 ~~~i~vI~ngvd~~~f~ 180 (252)
++++.+..|.|..+.+.
T Consensus 153 ~~~~~~tG~Pvr~~~~~ 169 (357)
T COG0707 153 PENVVVTGIPVRPEFEE 169 (357)
T ss_pred CCceEEecCcccHHhhc
Confidence 67888999988776664
No 90
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.37 E-value=3.8e-07 Score=72.29 Aligned_cols=145 Identities=12% Similarity=0.032 Sum_probs=81.5
Q ss_pred HHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccC-CCcccccccchHHHHHHHhhCCCcEEEecCchhH
Q psy8013 19 NLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYN-QSILPTMVCSIPLVRHILLREEISIVHGHSAFSA 97 (252)
Q Consensus 19 ~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~~~ 97 (252)
.++++|.+.++++.+++.... .........++..+.++...... .......+.....+.+++++.+||+||++.....
T Consensus 19 ~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~kPdivi~~~~~~~ 97 (380)
T PRK00025 19 GLIRALKARAPNLEFVGVGGP-RMQAAGCESLFDMEELAVMGLVEVLPRLPRLLKIRRRLKRRLLAEPPDVFIGIDAPDF 97 (380)
T ss_pred HHHHHHHhcCCCcEEEEEccH-HHHhCCCccccCHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 499999988888888876432 11111111222222222221100 0011123345567888899999999999874221
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCcc
Q psy8013 98 LAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVD 175 (252)
Q Consensus 98 ~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd 175 (252)
.. .....++..++|++++.++.. + .+. ....+.+.+.+|.++++|+..++.+ ...+. ++.++.|++.
T Consensus 98 ~~-~~a~~a~~~~ip~i~~~~~~~-~-~~~----~~~~~~~~~~~d~i~~~~~~~~~~~-~~~g~---~~~~~G~p~~ 164 (380)
T PRK00025 98 NL-RLEKKLRKAGIPTIHYVSPSV-W-AWR----QGRAFKIAKATDHVLALFPFEAAFY-DKLGV---PVTFVGHPLA 164 (380)
T ss_pred CH-HHHHHHHHCCCCEEEEeCCch-h-hcC----chHHHHHHHHHhhheeCCccCHHHH-HhcCC---CeEEECcCHH
Confidence 11 123445667999988766531 0 111 1112334667999999999888765 44444 3667777663
No 91
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=98.33 E-value=7.5e-06 Score=57.71 Aligned_cols=145 Identities=14% Similarity=0.045 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHHHHHC--CcEEEEEeccCCCCcce-eeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcE
Q psy8013 12 GVEEHIFNLSQCLLQR--GHKVIVLTHSYKDRVGI-RYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISI 88 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dv 88 (252)
|--..+..|+++|.++ |+.|.+-+.+..+.... ....+.+.+..+|.. .....+++++..+||+
T Consensus 32 GE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D-------------~~~~~~rfl~~~~P~~ 98 (186)
T PF04413_consen 32 GEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLD-------------FPWAVRRFLDHWRPDL 98 (186)
T ss_dssp HHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---S-------------SHHHHHHHHHHH--SE
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCcc-------------CHHHHHHHHHHhCCCE
Confidence 5567788999999887 67766666543322111 111223334344422 2345778888899999
Q ss_pred EEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceE
Q psy8013 89 VHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVS 168 (252)
Q Consensus 89 vh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~ 168 (252)
+.....-.... ....++..|+|++..---+-..+.........+.+.+++..|.|.+.|+..++.+ ...|.+++++.
T Consensus 99 ~i~~EtElWPn--ll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~-~~lG~~~~~v~ 175 (186)
T PF04413_consen 99 LIWVETELWPN--LLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERF-RKLGAPPERVH 175 (186)
T ss_dssp EEEES----HH--HHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHHH-HTTT-S--SEE
T ss_pred EEEEccccCHH--HHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHH-HHcCCCcceEE
Confidence 88876432112 4456677899976543332111111222334568889999999999999999987 78899889999
Q ss_pred EccC
Q psy8013 169 VIPN 172 (252)
Q Consensus 169 vI~n 172 (252)
|..|
T Consensus 176 v~Gn 179 (186)
T PF04413_consen 176 VTGN 179 (186)
T ss_dssp E---
T ss_pred EeCc
Confidence 9887
No 92
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=98.31 E-value=3e-05 Score=57.98 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=52.6
Q ss_pred CCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCC--------Cchh---hH-------HHHHHHHHhhcCCCEEE
Q psy8013 85 EISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGF--------ADSS---AI-------VTNKCLEISLAGCNHCI 146 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~--------~~~~---~~-------~~~~~~~~~~~~~d~vi 146 (252)
+.||.|+.+... .++.+..++...|+|++.|.||++.. .++. .. +...+-+..+..||.|+
T Consensus 172 ~advyHsvstGy-Agl~g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~Ad~I~ 250 (268)
T PF11997_consen 172 KADVYHSVSTGY-AGLLGALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRAADRIT 250 (268)
T ss_pred CCCEEecCCccH-HHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhCeec
Confidence 569999997532 23347888888999999999999531 1111 11 12223456788899999
Q ss_pred EechhhhhhHHHhhccCC
Q psy8013 147 CVSHIGKENTVLRARVNH 164 (252)
Q Consensus 147 ~~S~~~~~~~~~~~~~~~ 164 (252)
++++..++. ....|.++
T Consensus 251 ~l~~~n~~~-q~~~Ga~~ 267 (268)
T PF11997_consen 251 PLYEYNREW-QIELGADP 267 (268)
T ss_pred ccchhhHHH-HHHhCCCC
Confidence 999987754 45556543
No 93
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.23 E-value=4.5e-06 Score=66.39 Aligned_cols=89 Identities=7% Similarity=0.041 Sum_probs=63.0
Q ss_pred HHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhh
Q psy8013 75 PLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKE 154 (252)
Q Consensus 75 ~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 154 (252)
..+.+++++.+||+||++.+.+.+. ....++..++|++....+. . .. -.|..+.+|.+++.|+.+++
T Consensus 94 ~~l~~~l~~~kPDvVi~~~p~~~~~--~l~~~~~~~iP~~~v~td~-~---~~-------~~w~~~~~d~~~v~s~~~~~ 160 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFPTPVMS--VLTEQFNINIPVATVMTDY-R---LH-------KNWITPYSTRYYVATKETKQ 160 (391)
T ss_pred HHHHHHHHHhCcCEEEECCcHHHHH--HHHHhcCCCCCEEEEeCCC-C---cc-------cccccCCCCEEEECCHHHHH
Confidence 5678889999999999987654322 3333445688986554442 1 11 12455679999999999998
Q ss_pred hHHHhhccCCCceEEccCCccCC
Q psy8013 155 NTVLRARVNHYNVSVIPNAVDTT 177 (252)
Q Consensus 155 ~~~~~~~~~~~~i~vI~ngvd~~ 177 (252)
.+ ...|++++++.+++|+++..
T Consensus 161 ~l-~~~gi~~~ki~v~GiPv~~~ 182 (391)
T PRK13608 161 DF-IDVGIDPSTVKVTGIPIDNK 182 (391)
T ss_pred HH-HHcCCCHHHEEEECeecChH
Confidence 76 45688889999988888643
No 94
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.18 E-value=2.2e-06 Score=67.90 Aligned_cols=152 Identities=8% Similarity=0.001 Sum_probs=89.0
Q ss_pred CCcHH--HHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeeccccc-CCCcccccccchHHHHHHHhhCCC
Q psy8013 10 VGGVE--EHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFY-NQSILPTMVCSIPLVRHILLREEI 86 (252)
Q Consensus 10 ~GG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 86 (252)
.||++ .+--.++++|.++|.++.++....+ .........++....++..... ....+..++.....+.+++++.+|
T Consensus 12 aGgtsGhi~paal~~~l~~~~~~~~~~g~gg~-~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~~~~l~~~kP 90 (385)
T TIGR00215 12 AGEASGDILGAGLRQQLKEHYPNARFIGVAGP-RMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEVVQLAKQAKP 90 (385)
T ss_pred eCCccHHHHHHHHHHHHHhcCCCcEEEEEccH-HHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44443 4444899999999999999887532 1111101112233333322211 001122334445567788899999
Q ss_pred cEEEecCchhHHHHHHHHHHHhcCCcEEEEecC-CCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCC
Q psy8013 87 SIVHGHSAFSALAHETMMIARLLGLKTVFTDHS-LFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHY 165 (252)
Q Consensus 87 Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~ 165 (252)
|+|++.+. +.+.......++..|+|+++++.- .|.+. ....+.+.+.+|.+++.++..++.+ ...+ .
T Consensus 91 d~vi~~g~-~~~~~~~a~aa~~~gip~v~~i~P~~waw~-------~~~~r~l~~~~d~v~~~~~~e~~~~-~~~g---~ 158 (385)
T TIGR00215 91 DLLVGIDA-PDFNLTKELKKKDPGIKIIYYISPQVWAWR-------KWRAKKIEKATDFLLAILPFEKAFY-QKKN---V 158 (385)
T ss_pred CEEEEeCC-CCccHHHHHHHhhCCCCEEEEeCCcHhhcC-------cchHHHHHHHHhHhhccCCCcHHHH-HhcC---C
Confidence 99999996 334433445778889999865421 11111 1114455566999999999988765 3333 3
Q ss_pred ceEEccCCc
Q psy8013 166 NVSVIPNAV 174 (252)
Q Consensus 166 ~i~vI~ngv 174 (252)
+..++.|++
T Consensus 159 ~~~~vGnPv 167 (385)
T TIGR00215 159 PCRFVGHPL 167 (385)
T ss_pred CEEEECCch
Confidence 667788887
No 95
>KOG0853|consensus
Probab=98.16 E-value=5.3e-05 Score=60.49 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhhccCCCCCChhhhHHHHHhcCChHHHHHHHHHHHHHHhhcccc
Q psy8013 191 TLIAGIESAISDLKNGRAISPFKCHETVKSLYNWVDVSERTEIVYKRVTQEETK 244 (252)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~a~~~~~~y~~~~~~~~~ 244 (252)
.+++++.+...+..... ....++++++++.|||+.+.+++.++-.+.+..+..
T Consensus 422 ~~a~~~~kl~~~p~l~~-~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~~~~~~ 474 (495)
T KOG0853|consen 422 ELADALLKLRRDPELWA-RMGKNGLKRVKEMFSWQHYSERIASVLGKYLQWEKV 474 (495)
T ss_pred HHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHhHhcCCcccc
Confidence 46777777776665533 677788999999999999999999998887765443
No 96
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.00 E-value=3.7e-05 Score=59.18 Aligned_cols=151 Identities=14% Similarity=0.083 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecC
Q psy8013 14 EEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS 93 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~ 93 (252)
-.+...++++|.++||+|.|.+.+.+.... -....|+....+....................+.+++++.+||++.+..
T Consensus 13 vhfFk~~I~eL~~~GheV~it~R~~~~~~~-LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~~ 91 (335)
T PF04007_consen 13 VHFFKNIIRELEKRGHEVLITARDKDETEE-LLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAISFG 91 (335)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEeccchHHH-HHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEecC
Confidence 457789999999999999999987542211 1123455555443322110000011122233566777889999999887
Q ss_pred chhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEc-cC
Q psy8013 94 AFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVI-PN 172 (252)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI-~n 172 (252)
... +..++...|+|.|....+.... . ..+-.+..||.+++.+-.-... ...+|. + -++. +|
T Consensus 92 s~~-----a~~va~~lgiP~I~f~D~e~a~--~-------~~~Lt~Pla~~i~~P~~~~~~~-~~~~G~--~-~~i~~y~ 153 (335)
T PF04007_consen 92 SPE-----AARVAFGLGIPSIVFNDTEHAI--A-------QNRLTLPLADVIITPEAIPKEF-LKRFGA--K-NQIRTYN 153 (335)
T ss_pred cHH-----HHHHHHHhCCCeEEEecCchhh--c-------cceeehhcCCeeECCcccCHHH-HHhcCC--c-CCEEEEC
Confidence 543 5567788999998766653111 0 1223445688888877544432 345554 2 3455 78
Q ss_pred CccC----CCCCCCc
Q psy8013 173 AVDT----TVFVPDV 183 (252)
Q Consensus 173 gvd~----~~f~~~~ 183 (252)
|++. ..|.|++
T Consensus 154 G~~E~ayl~~F~Pd~ 168 (335)
T PF04007_consen 154 GYKELAYLHPFKPDP 168 (335)
T ss_pred CeeeEEeecCCCCCh
Confidence 8764 3455553
No 97
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=97.83 E-value=3.8e-05 Score=62.53 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=51.4
Q ss_pred CcEEEecCchhHHHHHHHHHHHh--cCCcEEEEecCCCC----------CC------chhh-------HHHHHHHHHhhc
Q psy8013 86 ISIVHGHSAFSALAHETMMIARL--LGLKTVFTDHSLFG----------FA------DSSA-------IVTNKCLEISLA 140 (252)
Q Consensus 86 ~Dvvh~~~~~~~~~~~~~~~~~~--~~~p~v~~~h~~~~----------~~------~~~~-------~~~~~~~~~~~~ 140 (252)
.=|.|+|.|..+.+ +..++. ..+..|+|.|.... +. +... .....+++.+..
T Consensus 144 ~ViaHfHEWmaG~g---ll~lr~~~~~VaTvFTTHAT~lGR~l~~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iEraaA~ 220 (633)
T PF05693_consen 144 KVIAHFHEWMAGVG---LLYLRKRKPDVATVFTTHATLLGRYLAANNKDFYNNLDKFNGDQEAGERNIYHKHSIERAAAH 220 (633)
T ss_dssp EEEEEEESGGGTTH---HHHHHHTT-SCEEEEEESS-HHHHHHTTTSS-TTTSGTTS-HHHHHHHTT-HHHHHHHHHHHH
T ss_pred cEEEEechHhHhHH---HHHHhccCCCeeEEEEecccchhhHhhcCCCcHHHHhhccCccccccCccchHHHHHHHHHHH
Confidence 34679999988774 333333 45678999997611 00 0000 111233455666
Q ss_pred CCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 141 GCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 141 ~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
.||++.+||+-++.+....++ ...=.|+|||+|.+.|....
T Consensus 221 ~AdvFTTVSeITa~Ea~~LL~--r~pDvV~pNGl~v~~~~~~~ 261 (633)
T PF05693_consen 221 YADVFTTVSEITAKEAEHLLK--RKPDVVTPNGLNVDKFPALH 261 (633)
T ss_dssp HSSEEEESSHHHHHHHHHHHS--S--SEE----B-GGGTSSTT
T ss_pred hcCeeeehhhhHHHHHHHHhC--CCCCEEcCCCccccccccch
Confidence 699999999988877432333 23336899999998876654
No 98
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=97.64 E-value=0.00064 Score=47.41 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=56.3
Q ss_pred hHHHHHHHhhCCCcEEEecCchhHHH-HHHHHHHHhc-CCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechh
Q psy8013 74 IPLVRHILLREEISIVHGHSAFSALA-HETMMIARLL-GLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHI 151 (252)
Q Consensus 74 ~~~l~~~~~~~~~Dvvh~~~~~~~~~-~~~~~~~~~~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~ 151 (252)
...+.+++++.+||+|.+..+.+... ...+...... ++|++..+=| +.. .. -.|....+|..++.|++
T Consensus 78 ~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD-~~~--~H-------~~W~~~~~D~y~Vase~ 147 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD-FDT--VH-------PFWIHPGVDRYFVASEE 147 (169)
T ss_pred HHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC-CCC--CC-------cCeecCCCCEEEECCHH
Confidence 34678888999999999998875322 1122233333 4665432222 210 00 02345679999999999
Q ss_pred hhhhHHHhhccCCCceEEcc
Q psy8013 152 GKENTVLRARVNHYNVSVIP 171 (252)
Q Consensus 152 ~~~~~~~~~~~~~~~i~vI~ 171 (252)
+++.+ ...|+++++|.+..
T Consensus 148 ~~~~l-~~~Gi~~~~I~vtG 166 (169)
T PF06925_consen 148 VKEEL-IERGIPPERIHVTG 166 (169)
T ss_pred HHHHH-HHcCCChhHEEEeC
Confidence 99987 56899999988754
No 99
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.51 E-value=0.0025 Score=49.48 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=58.9
Q ss_pred CC-cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeE-EEEee---cccccCC-Cccccc-------ccchHH
Q psy8013 10 VG-GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLK-VYYCP---IKTFYNQ-SILPTM-------VCSIPL 76 (252)
Q Consensus 10 ~G-G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~-v~~~~---~~~~~~~-~~~~~~-------~~~~~~ 76 (252)
.| |=-.....++++|.+ ||+|.+++....... ....++. +...| .....+. ...... ......
T Consensus 9 ~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 84 (321)
T TIGR00661 9 EGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNY---ISKYGFKVFETFPGIKLKGEDGKVNIVKTLRNKEYSPKKAIRR 84 (321)
T ss_pred cCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHh---hhhhcCcceeccCCceEeecCCcCcHHHHHHhhccccHHHHHH
Confidence 35 666778899999998 999999986532111 1111222 11111 0000000 011111 112334
Q ss_pred HHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 77 VRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 77 l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
..+++++.+||+|++..... +.++++..++|.|...|..
T Consensus 85 ~~~~l~~~~pDlVi~d~~~~-----~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 85 EINIIREYNPDLIISDFEYS-----TVVAAKLLKIPVICISNQN 123 (321)
T ss_pred HHHHHHhcCCCEEEECCchH-----HHHHHHhcCCCEEEEecch
Confidence 56788899999999996554 4567888999999766754
No 100
>PHA01633 putative glycosyl transferase group 1
Probab=97.47 E-value=0.00063 Score=52.61 Aligned_cols=62 Identities=10% Similarity=-0.044 Sum_probs=44.4
Q ss_pred CCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCCc
Q psy8013 110 GLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 110 ~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
+.|++.|+|+.+.. .++.+.+.+.+.+|++|+.+++.+. ..|++.. + +|+||+|.+.|.+..
T Consensus 70 ~~~~~tt~~g~~~~---------~~y~~~m~~~~~vIavS~~t~~~L~-~~G~~~~-i-~I~~GVD~~~f~p~~ 131 (335)
T PHA01633 70 KKYFYTTCDGIPNI---------EIVNKYLLQDVKFIPNSKFSAENLQ-EVGLQVD-L-PVFHGINFKIVENAE 131 (335)
T ss_pred CCceEEeeCCcCch---------HHHHHHHhcCCEEEeCCHHHHHHHH-HhCCCCc-e-eeeCCCChhhcCccc
Confidence 46789999997531 2334444556799999999999874 5566544 3 588999999887643
No 101
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=97.36 E-value=0.0038 Score=42.42 Aligned_cols=81 Identities=9% Similarity=0.082 Sum_probs=48.0
Q ss_pred HHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC---CCCCchhh-HHHHHHHHHh-hcCCCEEEEechhh
Q psy8013 78 RHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL---FGFADSSA-IVTNKCLEIS-LAGCNHCICVSHIG 152 (252)
Q Consensus 78 ~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~---~~~~~~~~-~~~~~~~~~~-~~~~d~vi~~S~~~ 152 (252)
.+......+|+|.+.+......+ ..+.....++|.++.+|.. ++...... -....+.... .-.||.|+.+|.+.
T Consensus 52 ~~~~~~~~~dll~aTsmldLa~l-~gL~p~l~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~n 130 (168)
T PF12038_consen 52 QQIPLSHSYDLLFATSMLDLATL-RGLRPDLANVPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAFN 130 (168)
T ss_pred hccccccCCCEEEeeccccHHHH-HhhccCCCCCCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchhh
Confidence 44455668899999886553222 2222255679999999987 33222111 1111222221 12399999999999
Q ss_pred hhhHHHh
Q psy8013 153 KENTVLR 159 (252)
Q Consensus 153 ~~~~~~~ 159 (252)
++.+...
T Consensus 131 r~sFL~~ 137 (168)
T PF12038_consen 131 RDSFLDG 137 (168)
T ss_pred HHHHHHH
Confidence 9887543
No 102
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.30 E-value=0.0014 Score=51.21 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=60.4
Q ss_pred chHHHHHHHhhCCCcEEEecCchh-HHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcC-CCEEEEech
Q psy8013 73 SIPLVRHILLREEISIVHGHSAFS-ALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAG-CNHCICVSH 150 (252)
Q Consensus 73 ~~~~l~~~~~~~~~Dvvh~~~~~~-~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~-~d~vi~~S~ 150 (252)
....+...+.+.+||+|.+++-.. .+. +..++...++|+ .++|+-.-..+..........+....+ |+..++.++
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD~~~~la--~alaA~~~~ipv-~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t~ 131 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGDRNEALA--AALAAFYLNIPV-AHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPTE 131 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETTSHHHHH--HHHHHHHTT-EE-EEES-----S-TTSSTTHHHHHHHHHHH-SEEEESSH
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCchHHH--HHHHHHHhCCCE-EEecCCCCccccCCCCchhhhhhhhhhhhhhhccCCH
Confidence 345677888899999999998543 333 778888999995 555543111122111233445555555 999999999
Q ss_pred hhhhhHHHhhccCCCceEEccC-CccC
Q psy8013 151 IGKENTVLRARVNHYNVSVIPN-AVDT 176 (252)
Q Consensus 151 ~~~~~~~~~~~~~~~~i~vI~n-gvd~ 176 (252)
..++++ .+.|.++++|.++.| ++|.
T Consensus 132 ~~~~~L-~~~G~~~~rI~~vG~~~~D~ 157 (346)
T PF02350_consen 132 EARERL-LQEGEPPERIFVVGNPGIDA 157 (346)
T ss_dssp HHHHHH-HHTT--GGGEEE---HHHHH
T ss_pred HHHHHH-HhcCCCCCeEEEEChHHHHH
Confidence 999886 677999999999988 4453
No 103
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=97.30 E-value=0.00036 Score=56.81 Aligned_cols=95 Identities=17% Similarity=0.051 Sum_probs=60.3
Q ss_pred CCcEEEecCchhHHHHHHHHHH-HhcCCcEEEEecCCCCCCchhhH--HHHHHHHHhhcCCCEEEEechhhhhhHHHhh-
Q psy8013 85 EISIVHGHSAFSALAHETMMIA-RLLGLKTVFTDHSLFGFADSSAI--VTNKCLEISLAGCNHCICVSHIGKENTVLRA- 160 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~~~~~--~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~- 160 (252)
..|+|++|.+...+. ...+. +..+.|+++..|-.++....... ....+++.++ .+|.+...+....+.+....
T Consensus 131 ~~d~iwihDyhl~ll--p~~lr~~~~~~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l-~~D~igF~t~~~~~~Fl~~~~ 207 (460)
T cd03788 131 PGDLVWVHDYHLLLL--PQMLRERGPDARIGFFLHIPFPSSEIFRCLPWREELLRGLL-GADLIGFQTERYARNFLSCCS 207 (460)
T ss_pred CCCEEEEeChhhhHH--HHHHHhhCCCCeEEEEEeCCCCChHHHhhCCChHHHHHHHh-cCCEEEECCHHHHHHHHHHHH
Confidence 569999999865432 33333 33467999999988764433221 1223344433 49999998876665554422
Q ss_pred ---------------ccCCCceEEccCCccCCCCCCC
Q psy8013 161 ---------------RVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 161 ---------------~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
+....++.+||||||++.|.+.
T Consensus 208 ~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~ 244 (460)
T cd03788 208 RLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKL 244 (460)
T ss_pred HHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHH
Confidence 1112468999999999988754
No 104
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.29 E-value=0.012 Score=46.37 Aligned_cols=141 Identities=13% Similarity=0.067 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHHHC--CcEEEEEeccCCCCcce-eeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcE
Q psy8013 12 GVEEHIFNLSQCLLQR--GHKVIVLTHSYKDRVGI-RYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISI 88 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dv 88 (252)
|--..+.-|.++|.++ +..+.+-+.+..+.... ....+.+.+..+|.. ....++++++..+||+
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D-------------~~~~v~rFl~~~~P~l 126 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLD-------------LPIAVRRFLRKWRPKL 126 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcC-------------chHHHHHHHHhcCCCE
Confidence 4446677889999888 66666655442221111 111222555555543 2235778889999998
Q ss_pred EEecCc--hhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCc
Q psy8013 89 VHGHSA--FSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYN 166 (252)
Q Consensus 89 vh~~~~--~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~ 166 (252)
+..... ++. ...-++..|+|.+..---.-..+.........+.+.++++.|.|++.|+..++.+ ...|. .+
T Consensus 127 ~Ii~EtElWPn----li~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf-~~LGa--~~ 199 (419)
T COG1519 127 LIIMETELWPN----LINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRF-RSLGA--KP 199 (419)
T ss_pred EEEEeccccHH----HHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHH-HhcCC--cc
Confidence 877753 332 3345667899976543222111112223344568889999999999999999987 56665 33
Q ss_pred eEEccC
Q psy8013 167 VSVIPN 172 (252)
Q Consensus 167 i~vI~n 172 (252)
+.+..|
T Consensus 200 v~v~GN 205 (419)
T COG1519 200 VVVTGN 205 (419)
T ss_pred eEEecc
Confidence 666555
No 105
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.29 E-value=0.0019 Score=51.00 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=65.2
Q ss_pred cchHHHHHHHhhCCCcEEEecCc-hhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcC-CCEEEEec
Q psy8013 72 CSIPLVRHILLREEISIVHGHSA-FSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAG-CNHCICVS 149 (252)
Q Consensus 72 ~~~~~l~~~~~~~~~Dvvh~~~~-~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~-~d~vi~~S 149 (252)
.....+.+++.+.+||+|.+++- ...+. +.+++...++|++...-+...... .....+....+ ++...+.+
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~GD~~~~la--~alaA~~~~IPv~HveaG~rs~~~-----~eE~~r~~i~~la~l~f~~t 152 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDRFEMLA--AAIAAALLNIPIAHIHGGEVTEGA-----IDESIRHAITKLSHLHFVAT 152 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHhCCcEEEEECCccCCCC-----chHHHHHHHHHHHhhccCCC
Confidence 34557788899999999999984 44344 778889999997644433332221 12233444344 67888888
Q ss_pred hhhhhhHHHhhccCCCceEEccC-CccC
Q psy8013 150 HIGKENTVLRARVNHYNVSVIPN-AVDT 176 (252)
Q Consensus 150 ~~~~~~~~~~~~~~~~~i~vI~n-gvd~ 176 (252)
+..++++ .+.|.+++++.++.| ++|.
T Consensus 153 ~~~~~~L-~~eg~~~~~i~~tG~~~iD~ 179 (365)
T TIGR03568 153 EEYRQRV-IQMGEDPDRVFNVGSPGLDN 179 (365)
T ss_pred HHHHHHH-HHcCCCCCcEEEECCcHHHH
Confidence 8888776 567887888888877 5553
No 106
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.15 E-value=0.003 Score=49.03 Aligned_cols=97 Identities=16% Similarity=0.091 Sum_probs=70.3
Q ss_pred chHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcC-CCEEEEechh
Q psy8013 73 SIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAG-CNHCICVSHI 151 (252)
Q Consensus 73 ~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~-~d~vi~~S~~ 151 (252)
.+..+.+++.+.+||+|.+|+-... .+.+.+++...++|+....-|.-..... +...+.+.+... |+.-++.++.
T Consensus 80 ~i~~~~~vl~~~kPD~VlVhGDT~t-~lA~alaa~~~~IpV~HvEAGlRt~~~~---~PEE~NR~l~~~~S~~hfapte~ 155 (383)
T COG0381 80 IIEGLSKVLEEEKPDLVLVHGDTNT-TLAGALAAFYLKIPVGHVEAGLRTGDLY---FPEEINRRLTSHLSDLHFAPTEI 155 (383)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcch-HHHHHHHHHHhCCceEEEecccccCCCC---CcHHHHHHHHHHhhhhhcCChHH
Confidence 3456778889999999999985442 2226788888899988776665333222 222334444444 8999999999
Q ss_pred hhhhHHHhhccCCCceEEccCCc
Q psy8013 152 GKENTVLRARVNHYNVSVIPNAV 174 (252)
Q Consensus 152 ~~~~~~~~~~~~~~~i~vI~ngv 174 (252)
.++++ ...|.++++|.|+.|.+
T Consensus 156 ar~nL-l~EG~~~~~IfvtGnt~ 177 (383)
T COG0381 156 ARKNL-LREGVPEKRIFVTGNTV 177 (383)
T ss_pred HHHHH-HHcCCCccceEEeCChH
Confidence 99986 67799999999999975
No 107
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.04 E-value=0.0025 Score=55.34 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=61.4
Q ss_pred CcEEEecCchhHHHHHHHHHH-HhcCCcEEEEecCCCCCCchhhH--HHHHHHHHhhcCCCEEEEechhhhhhHHHhh--
Q psy8013 86 ISIVHGHSAFSALAHETMMIA-RLLGLKTVFTDHSLFGFADSSAI--VTNKCLEISLAGCNHCICVSHIGKENTVLRA-- 160 (252)
Q Consensus 86 ~Dvvh~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~~~~~--~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~-- 160 (252)
-|+|-+|.+...+. ..++. +..+.++.+..|..|+....... ..+.+++ .+-.+|.|-..+....++++...
T Consensus 148 ~d~vWvhDYhL~ll--p~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~r~~il~-gll~aDligF~t~~y~r~Fl~~~~r 224 (797)
T PLN03063 148 GDVVWCHDYHLMFL--PQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPSRSELLR-AVLTADLIGFHTYDFARHFLSACTR 224 (797)
T ss_pred CCEEEEecchhhhH--HHHHHHhCCCCcEEEEecCCCCCHHHHhhCCCHHHHHH-HHhcCCEEEeCCHHHHHHHHHHHHH
Confidence 37999999875443 44443 34567899999998875543332 2223333 33458888888888887775421
Q ss_pred --cc-----------CCCceEEccCCccCCCCCCC
Q psy8013 161 --RV-----------NHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 161 --~~-----------~~~~i~vI~ngvd~~~f~~~ 182 (252)
+. ...++.+||||||++.|.+.
T Consensus 225 ~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~ 259 (797)
T PLN03063 225 ILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINT 259 (797)
T ss_pred HhCccccCCceEECCeEEEEEEEecccCHHHHHHH
Confidence 11 12468899999999988654
No 108
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.96 E-value=0.0032 Score=54.42 Aligned_cols=95 Identities=17% Similarity=0.084 Sum_probs=59.4
Q ss_pred CCcEEEecCchhHHHHHHHHHHH-hcCCcEEEEecCCCCCCchhhHH--HHHHHHHhhcCCCEEEEechhhhhhHHHhh-
Q psy8013 85 EISIVHGHSAFSALAHETMMIAR-LLGLKTVFTDHSLFGFADSSAIV--TNKCLEISLAGCNHCICVSHIGKENTVLRA- 160 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~~~~~~~--~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~- 160 (252)
.-|+|.+|.+...+. +..+.+ ....++-+..|-.|+.......+ ...+++ .+-.+|.|-..+....+++....
T Consensus 133 ~~d~vwvhDYhl~l~--p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp~~~~ll~-~ll~~Dligf~t~~~~r~Fl~~~~ 209 (726)
T PRK14501 133 PGDVVWVHDYQLMLL--PAMLRERLPDARIGFFLHIPFPSFEVFRLLPWREEILE-GLLGADLIGFHTYDYVRHFLSSVL 209 (726)
T ss_pred CCCEEEEeCchhhhH--HHHHHhhCCCCcEEEEeeCCCCChHHHhhCCChHHHHH-HHhcCCeEEeCCHHHHHHHHHHHH
Confidence 348999999876443 444433 34568888999987754332221 222233 33458888888887776654321
Q ss_pred ---c-----------cCCCceEEccCCccCCCCCCC
Q psy8013 161 ---R-----------VNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 161 ---~-----------~~~~~i~vI~ngvd~~~f~~~ 182 (252)
+ ....++.++|||||++.|.+.
T Consensus 210 ~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~ 245 (726)
T PRK14501 210 RVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNS 245 (726)
T ss_pred HHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHH
Confidence 1 112258999999999998754
No 109
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=96.94 E-value=0.0018 Score=52.57 Aligned_cols=95 Identities=18% Similarity=0.089 Sum_probs=63.1
Q ss_pred CCcEEEecCchhHHHHHHHHHHHh-cCCcEEEEecCCCCCCchhhH--HHHHHHHHhhcCCCEEEEechhhhhhHHHhh-
Q psy8013 85 EISIVHGHSAFSALAHETMMIARL-LGLKTVFTDHSLFGFADSSAI--VTNKCLEISLAGCNHCICVSHIGKENTVLRA- 160 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~--~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~- 160 (252)
.-|+|.+|.....+. +..+.+. ...++.+..|-.|+..+.... ..+.++ ..+-.+|.|-..+....++++...
T Consensus 127 ~~d~vwvhDYhl~l~--p~~lr~~~~~~~igfFlHipfP~~e~f~~lp~r~~il-~gll~~dligF~t~~~~~~Fl~~~~ 203 (456)
T TIGR02400 127 PGDIVWVHDYHLMLL--PAMLRELGVQNKIGFFLHIPFPSSEIYRTLPWRRELL-EGLLAYDLVGFQTYDDARNFLSAVS 203 (456)
T ss_pred CCCEEEEecchhhHH--HHHHHhhCCCCeEEEEEeCCCCChHHHhhCCcHHHHH-HHHhcCCEEEECCHHHHHHHHHHHH
Confidence 348999999875443 4444433 345788899987765443322 222333 334469999999998888876432
Q ss_pred ---c-----------cCCCceEEccCCccCCCCCCC
Q psy8013 161 ---R-----------VNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 161 ---~-----------~~~~~i~vI~ngvd~~~f~~~ 182 (252)
+ ....++.++|||||++.|.+.
T Consensus 204 ~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~ 239 (456)
T TIGR02400 204 RELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQ 239 (456)
T ss_pred HHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHH
Confidence 1 134468899999999998754
No 110
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=96.80 E-value=0.025 Score=39.34 Aligned_cols=136 Identities=17% Similarity=0.153 Sum_probs=70.9
Q ss_pred CCcHHHHHHHHHHHH-H-HCCcEEEEEeccCCCCcce-e--e--eeCCeEEEEeecccccCCCccc---ccccchHHHHH
Q psy8013 10 VGGVEEHIFNLSQCL-L-QRGHKVIVLTHSYKDRVGI-R--Y--MTNGLKVYYCPIKTFYNQSILP---TMVCSIPLVRH 79 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L-~-~~G~~V~v~~~~~~~~~~~-~--~--~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~l~~ 79 (252)
.||=-..+..|.+.+ . ...++..+++......... . + .....++..+|........... ..+........
T Consensus 7 sGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~~~~~~~ 86 (170)
T PF08660_consen 7 SGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRAFLQSLR 86 (170)
T ss_pred CcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHHHHHHHH
Confidence 466666667777777 2 2256666776653321110 0 0 0000123333322221111111 22223334445
Q ss_pred HHhhCCCcEEEecCchhHHHHHHHHHHHhc------CCcEEEEecCC--CCCCchhhHHHHHHHHHhhcCCCEEEEechh
Q psy8013 80 ILLREEISIVHGHSAFSALAHETMMIARLL------GLKTVFTDHSL--FGFADSSAIVTNKCLEISLAGCNHCICVSHI 151 (252)
Q Consensus 80 ~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~------~~p~v~~~h~~--~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~ 151 (252)
++.+.+||+|.++++...+. ...+++.. +.++|+..--. ...+.. -+.++.-+|.+++.-++
T Consensus 87 il~r~rPdvii~nGpg~~vp--~~~~~~l~~~~~~~~~kiIyIES~aRv~~lSlT--------Gklly~~aD~f~VQW~~ 156 (170)
T PF08660_consen 87 ILRRERPDVIISNGPGTCVP--VCLAAKLLRLLGLRGSKIIYIESFARVKTLSLT--------GKLLYPFADRFIVQWEE 156 (170)
T ss_pred HHHHhCCCEEEEcCCceeeH--HHHHHHHHHHhhccCCcEEEEEeeeecCCCchH--------HHHHHHhCCEEEEcCHH
Confidence 66778999999999877655 66667777 88887743221 111111 12233359999999998
Q ss_pred hhhh
Q psy8013 152 GKEN 155 (252)
Q Consensus 152 ~~~~ 155 (252)
+++.
T Consensus 157 l~~~ 160 (170)
T PF08660_consen 157 LAEK 160 (170)
T ss_pred HHhH
Confidence 8764
No 111
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.18 Score=39.26 Aligned_cols=160 Identities=14% Similarity=0.027 Sum_probs=86.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeC--CeEEEEeecccccCCCcccccccchH--HHHHHHhhCC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTN--GLKVYYCPIKTFYNQSILPTMVCSIP--LVRHILLREE 85 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~ 85 (252)
.+|...+-.-+.+.|...||+|..+=+............. +... .+..... .....++..+
T Consensus 13 ~~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k~rd~~~~~~~~~---------------~~~~~~~e~~~~~~i~~fk 77 (373)
T COG4641 13 NNGSAEYYRGLLRALKMDGMKVLFLESGDFWDYKNRDIDAEDGCTE---------------AFYKDQPELESLLYIREFK 77 (373)
T ss_pred cCCchhhHHHHHHHHHhccceEEEEecccHHhhhcccccCccchhh---------------eeecCcHHHHHHHHHHhcC
Confidence 3677788888999999999999998776433222111111 1111 0111111 2234567889
Q ss_pred CcEEEecCchh----HHHHHHHHHHHhcCCcEEEEecCC-CCCCchhhHHHHHHHHHhhcCCCEEEEechhh-hhhHHHh
Q psy8013 86 ISIVHGHSAFS----ALAHETMMIARLLGLKTVFTDHSL-FGFADSSAIVTNKCLEISLAGCNHCICVSHIG-KENTVLR 159 (252)
Q Consensus 86 ~Dvvh~~~~~~----~~~~~~~~~~~~~~~p~v~~~h~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~-~~~~~~~ 159 (252)
+|++.+..... -.....+-.++..++|+++..-.. +............+-+..+..-|.|++.++.. ++.+.+.
T Consensus 78 ~d~iv~~~~~~~~~~~~~~~~~a~l~~~~l~~~~w~te~p~~~~~~~~~~~~~~~~~~l~~fd~v~~~g~~l~~~~yyq~ 157 (373)
T COG4641 78 PDIIVNMSGDDQPDEESTIDLWAWLKRKCLPVIVWYTEDPYDTDIFSQVAEEQLARRPLFIFDNVLSFGGGLVANKYYQE 157 (373)
T ss_pred CcEEEEecccccccceehHHHHHHhhcCCcceEEEEeccchhhhhhhhhhHHHhhccccchhhhhhhccchHHHHHHHHh
Confidence 99988776431 011113333455567855543332 11111111111111122333356677878877 4443323
Q ss_pred hccCCCceEEccCCccCCCCCCCcccc
Q psy8013 160 ARVNHYNVSVIPNAVDTTVFVPDVSRR 186 (252)
Q Consensus 160 ~~~~~~~i~vI~ngvd~~~f~~~~~~~ 186 (252)
. ...++..+|.++|.+.|.+.++..
T Consensus 158 ~--~~~~~~~~~~a~d~~~~~~i~~da 182 (373)
T COG4641 158 G--GARNCYYLPWAVDDSLFHPIPPDA 182 (373)
T ss_pred h--cccceeccCccCCchhcccCCccc
Confidence 2 356888999999999999887433
No 112
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=96.64 E-value=0.028 Score=45.03 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=84.9
Q ss_pred CCCcHHHHHHHHHHHHHH--CCcEEE---EEeccCCCCcceeeeeCCeEEEEeecccccCCCcccc-------cccchHH
Q psy8013 9 NVGGVEEHIFNLSQCLLQ--RGHKVI---VLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPT-------MVCSIPL 76 (252)
Q Consensus 9 ~~GG~~~~~~~l~~~L~~--~G~~V~---v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~ 76 (252)
+.-|--.....++++|.+ .|++|. ++.....-. ..-....| ....+|............ ++.....
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e-~~~ip~~g-~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~~ 82 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ-NLGIPIIG-PTKELPSGGFSYQSLRGLLRDLRAGLVGLTLG 82 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh-hCCCceeC-CCCCCCCCCccCCCHHHHHHHHHhhHHHHHHH
Confidence 334666778899999988 599999 666542211 11111222 444455444332211110 1112223
Q ss_pred HHHHHhhC--CCcEEEecCchhHHHHHHHHHHHhcCCcEEE---EecCCCCCC----chhhHHH-------HHHH-HHhh
Q psy8013 77 VRHILLRE--EISIVHGHSAFSALAHETMMIARLLGLKTVF---TDHSLFGFA----DSSAIVT-------NKCL-EISL 139 (252)
Q Consensus 77 l~~~~~~~--~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~---~~h~~~~~~----~~~~~~~-------~~~~-~~~~ 139 (252)
-.+++++. +||+|.+.+... ...+++..|+|+++ +..+.+..+ .....+. ..++ ..+.
T Consensus 83 ~~~~~~~~~~~p~~v~~~Gg~v-----~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~ 157 (396)
T TIGR03492 83 QWRALRKWAKKGDLIVAVGDIV-----PLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMR 157 (396)
T ss_pred HHHHHHHHhhcCCEEEEECcHH-----HHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHHHHHHhh
Confidence 34566777 999999998654 45567888999876 444433000 0000000 0001 2333
Q ss_pred -cCCCEEEEechhhhhhHHHhhccCCCceEEccCCc
Q psy8013 140 -AGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAV 174 (252)
Q Consensus 140 -~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngv 174 (252)
+.|+.+.+..+...+.+ .+.++ ++.++-|.+
T Consensus 158 ~~~a~~v~~~~~~t~~~l-~~~g~---k~~~vGnPv 189 (396)
T TIGR03492 158 SRRCLAVFVRDRLTARDL-RRQGV---RASYLGNPM 189 (396)
T ss_pred chhhCEEeCCCHHHHHHH-HHCCC---eEEEeCcCH
Confidence 44888888888877765 45454 888888887
No 113
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=96.62 E-value=0.01 Score=49.92 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=59.3
Q ss_pred CCCcEEEecCchhHHHHHHHH---HH---------HhcCCcEEEEecCCCCCCc--hhhHHH------------------
Q psy8013 84 EEISIVHGHSAFSALAHETMM---IA---------RLLGLKTVFTDHSLFGFAD--SSAIVT------------------ 131 (252)
Q Consensus 84 ~~~Dvvh~~~~~~~~~~~~~~---~~---------~~~~~p~v~~~h~~~~~~~--~~~~~~------------------ 131 (252)
.+|||+|+|.+.+.+...-++ +. ...+..+++|.|+..+... +.....
T Consensus 160 ~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~~~~~ 239 (601)
T TIGR02094 160 IDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQL 239 (601)
T ss_pred CCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCCHHHH
Confidence 589999999998876522210 10 0114678999999832110 100000
Q ss_pred -------------HHHHHHhhcCCCEEEEechhhhhhHHHhhc-------cCCCceEEccCCccCCCCCCCc
Q psy8013 132 -------------NKCLEISLAGCNHCICVSHIGKENTVLRAR-------VNHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 132 -------------~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~-------~~~~~i~vI~ngvd~~~f~~~~ 183 (252)
-.+.+..+..||.|.+||+-..+-.....+ ....++.=|-||||...+.|..
T Consensus 240 ~~~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~ 311 (601)
T TIGR02094 240 LALGRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPE 311 (601)
T ss_pred HhhhhhccCccCceeHHHHHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCHH
Confidence 022445666799999999976652211111 1123588899999999887543
No 114
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=96.56 E-value=0.0044 Score=49.69 Aligned_cols=103 Identities=17% Similarity=0.021 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeeccccc-----C-C--------Ccccccc------
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFY-----N-Q--------SILPTMV------ 71 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~-~--------~~~~~~~------ 71 (252)
|=-.-+..++++|.++||+|++++...-. ......|++++.++..... . . .......
T Consensus 12 GHv~P~l~la~~L~~rGh~V~~~t~~~~~---~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (401)
T cd03784 12 GDVQPLVALAWALRAAGHEVRVATPPEFA---DLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLLGALRLLRRE 88 (401)
T ss_pred chHHHHHHHHHHHHHCCCeEEEeeCHhHH---HHHHHcCCceeeCCCCHHHHHhhhhhcccccccchHHHHHHHHHHHHH
Confidence 33345678999999999999999986311 1112345555544321100 0 0 0000000
Q ss_pred --cchHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCC
Q psy8013 72 --CSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLF 121 (252)
Q Consensus 72 --~~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~ 121 (252)
.....+...++..+||+|+.+... .. +..++...|+|++...+..+
T Consensus 89 ~~~~~~~~~~~~~~~~pDlvi~d~~~--~~--~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 89 AEAMLDDLVAAARDWGPDLVVADPLA--FA--GAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred HHHHHHHHHHHhcccCCCEEEeCcHH--HH--HHHHHHHhCCCeEEeecccC
Confidence 011123344456799999888722 22 66678889999988887764
No 115
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=96.33 E-value=0.016 Score=46.32 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=53.3
Q ss_pred HHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccC--C-----Cccccccc--------chHHHHHHH
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYN--Q-----SILPTMVC--------SIPLVRHIL 81 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-----~~~~~~~~--------~~~~l~~~~ 81 (252)
...|+++|.++||+|++++...- .......|+.+..++...... . ........ ....+...+
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~~~~~---~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYATTEEF---AERVEAAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAEDVLPQLEEAY 88 (392)
T ss_pred cHHHHHHHHhCCCeEEEEeCHHH---HHHHHHcCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999998531 111223455555444321110 0 00000000 111233445
Q ss_pred hhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEe
Q psy8013 82 LREEISIVHGHSAFSALAHETMMIARLLGLKTVFTD 117 (252)
Q Consensus 82 ~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~ 117 (252)
+..+||+|.+..... . +..++...|+|+|...
T Consensus 89 ~~~~pDlVi~d~~~~--~--~~~~A~~~giP~v~~~ 120 (392)
T TIGR01426 89 KGDRPDLIVYDIASW--T--GRLLARKWDVPVISSF 120 (392)
T ss_pred cCCCCCEEEECCccH--H--HHHHHHHhCCCEEEEe
Confidence 567899997776332 2 6667888999988654
No 116
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.30 E-value=0.047 Score=41.22 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcc---cccccchHHHHHHHhhCCCcEEE
Q psy8013 14 EEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSIL---PTMVCSIPLVRHILLREEISIVH 90 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~Dvvh 90 (252)
.++..++...|.++||+|.+-|.+.+.... -...-|+....+..... .... .........|.+++.+.+|||..
T Consensus 13 vhfFk~lI~elekkG~ev~iT~rd~~~v~~-LLd~ygf~~~~Igk~g~--~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i 89 (346)
T COG1817 13 VHFFKNLIWELEKKGHEVLITCRDFGVVTE-LLDLYGFPYKSIGKHGG--VTLKEKLLESAERVYKLSKIIAEFKPDVAI 89 (346)
T ss_pred hhHHHHHHHHHHhCCeEEEEEEeecCcHHH-HHHHhCCCeEeecccCC--ccHHHHHHHHHHHHHHHHHHHhhcCCceEe
Confidence 467889999999999999999987543221 11223333333322210 1011 01112233577888999999987
Q ss_pred ecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEc
Q psy8013 91 GHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVI 170 (252)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI 170 (252)
.-... . +...+...|+|.|+..-+-. ... ..+..+..|+.+++.+-..... ...+|-.+.++ +=
T Consensus 90 ~~~s~--~---l~rvafgLg~psIi~~D~eh------A~~---qnkl~~Pla~~ii~P~~~~~~~-~~~~G~~p~~i-~~ 153 (346)
T COG1817 90 GKHSP--E---LPRVAFGLGIPSIIFVDNEH------AEA---QNKLTLPLADVIITPEAIDEEE-LLDFGADPNKI-SG 153 (346)
T ss_pred ecCCc--c---hhhHHhhcCCceEEecCChh------HHH---HhhcchhhhhheecccccchHH-HHHhCCCccce-ec
Confidence 73321 1 45667778999877544321 111 1234555688888887665544 35666544444 33
Q ss_pred cCCc----cCCCCCCCc
Q psy8013 171 PNAV----DTTVFVPDV 183 (252)
Q Consensus 171 ~ngv----d~~~f~~~~ 183 (252)
+||+ ....|.|++
T Consensus 154 ~~giae~~~v~~f~pd~ 170 (346)
T COG1817 154 YNGIAELANVYGFVPDP 170 (346)
T ss_pred ccceeEEeecccCCCCH
Confidence 4554 223355554
No 117
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=96.30 E-value=0.03 Score=43.36 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccC---CCcc-c----------ccccchHHH
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYN---QSIL-P----------TMVCSIPLV 77 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~-~----------~~~~~~~~l 77 (252)
|=-+....|+++| +||+|++++........ .+.+....++...... .... . ........+
T Consensus 13 GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (318)
T PF13528_consen 13 GHASRCLALARAL--RGHEVTFITSGPAPEFL----KPRFPVREIPGLGPIQENGRLDRWKTVRNNIRWLARLARRIRRE 86 (318)
T ss_pred CHHHHHHHHHHHH--ccCceEEEEcCCcHHHh----ccccCEEEccCceEeccCCccchHHHHHHHHHhhHHHHHHHHHH
Confidence 4556778899999 48999999987432111 1112233232211110 0000 0 011223345
Q ss_pred HHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCC
Q psy8013 78 RHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLF 121 (252)
Q Consensus 78 ~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~ 121 (252)
.+.+++.+||+|.+..... ...+++..++|+|...|..+
T Consensus 87 ~~~l~~~~pDlVIsD~~~~-----~~~aa~~~giP~i~i~~~~~ 125 (318)
T PF13528_consen 87 IRWLREFRPDLVISDFYPL-----AALAARRAGIPVIVISNQYW 125 (318)
T ss_pred HHHHHhcCCCEEEEcChHH-----HHHHHHhcCCCEEEEEehHH
Confidence 5677888999999986443 44677889999987766653
No 118
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.78 E-value=0.46 Score=38.51 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=58.4
Q ss_pred CCcEEEecCchh------HHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHH
Q psy8013 85 EISIVHGHSAFS------ALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVL 158 (252)
Q Consensus 85 ~~Dvvh~~~~~~------~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~ 158 (252)
+.|++..-+... ...+.....++..|.|+++.-++.-++ .....+++.++.++++|.|.+=-+..++.+ .
T Consensus 117 ~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiGPf---~~~~~r~l~r~vl~~~~~ItvRD~~S~~~L-k 192 (426)
T PRK10017 117 GYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVGPF---QDEQFNQLANYVFGHCDALILRESVSLDLM-K 192 (426)
T ss_pred hCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCCCc---CCHHHHHHHHHHHhcCCEEEEccHHHHHHH-H
Confidence 678877664211 111112356788899999999986544 344556778889999999888877777654 7
Q ss_pred hhccCCCceEEccCC
Q psy8013 159 RARVNHYNVSVIPNA 173 (252)
Q Consensus 159 ~~~~~~~~i~vI~ng 173 (252)
..|+...++.+.+..
T Consensus 193 ~lGv~~~~v~~~aDp 207 (426)
T PRK10017 193 RSNITTAKVEHGVDT 207 (426)
T ss_pred HhCCCccceEEecCh
Confidence 788877777776643
No 119
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=95.66 E-value=0.092 Score=43.57 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCCcHH-HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 8 PNVGGVE-EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 8 P~~GG~~-~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|..|+.. .+...++++|+++||+||++++.
T Consensus 28 P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 28 PTPAYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4444444 56778999999999999999885
No 120
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.52 E-value=0.14 Score=38.95 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
|=-..+..||++|.++|++|.+++...+..........|+.++.++.... .......+.+++++.+||++.+
T Consensus 15 GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~--------~~~d~~~~~~~l~~~~~d~vV~ 86 (279)
T TIGR03590 15 GHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESS--------RYDDALELINLLEEEKFDILIV 86 (279)
T ss_pred cHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCc--------hhhhHHHHHHHHHhcCCCEEEE
Confidence 55577899999999999999999987544322233456677777654321 0122345777888889999988
Q ss_pred cCch
Q psy8013 92 HSAF 95 (252)
Q Consensus 92 ~~~~ 95 (252)
-.+.
T Consensus 87 D~y~ 90 (279)
T TIGR03590 87 DHYG 90 (279)
T ss_pred cCCC
Confidence 8753
No 121
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=95.24 E-value=0.012 Score=39.45 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecc-cccCCC-ccc---c---cccchHHHHHHHhhCCC
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIK-TFYNQS-ILP---T---MVCSIPLVRHILLREEI 86 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~-~~~---~---~~~~~~~l~~~~~~~~~ 86 (252)
.=...|+++|.++||+|.+.+... ........|++...++.. ...... ... . .......+.+.+....+
T Consensus 13 ~P~lala~~L~~rGh~V~~~~~~~---~~~~v~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (139)
T PF03033_consen 13 YPFLALARALRRRGHEVRLATPPD---FRERVEAAGLEFVPIPGDSRLPRSLEPLANLRRLARLIRGLEEAMRILARFRP 89 (139)
T ss_dssp HHHHHHHHHHHHTT-EEEEEETGG---GHHHHHHTT-EEEESSSCGGGGHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeEEEeeccc---ceecccccCceEEEecCCcCcCcccchhhhhhhHHHHhhhhhHHHHHhhccCc
Confidence 445789999999999999888752 222235678888777655 111100 000 0 01112223344444333
Q ss_pred c------------EEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 87 S------------IVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 87 D------------vvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
| ++.... ....+..++...++|.+......
T Consensus 90 ~~~~~~~~~~~~~~i~~~~----~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 90 DLVVAAGGYVADDVIIAAP----LAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp CCCCHCTTTTECCEECHHH----HHTHHHHHHHHHTS-EEEEESSG
T ss_pred chhhhccCcccchHHHhhh----hcCccceeEhhhCchHHHHhhCC
Confidence 3 332222 22236677888999998876654
No 122
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=94.60 E-value=0.64 Score=34.83 Aligned_cols=96 Identities=18% Similarity=0.310 Sum_probs=59.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||..- ...+++.|.+.||+|.+.+.+..+..... ...+..++ .. .+ ....+..+++..++|+|
T Consensus 6 lGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~-~~g~~~v~-~g------------~l-~~~~l~~~l~~~~i~~V 69 (256)
T TIGR00715 6 MGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYP-IHQALTVH-TG------------AL-DPQELREFLKRHSIDIL 69 (256)
T ss_pred EechHH-HHHHHHHHHhCCCeEEEEEccCCcccccc-ccCCceEE-EC------------CC-CHHHHHHHHHhcCCCEE
Confidence 477664 89999999999999998877643221111 11111221 10 01 12347788899999965
Q ss_pred -EecCchhH-HHHHHHHHHHhcCCcEEEEecCCC
Q psy8013 90 -HGHSAFSA-LAHETMMIARLLGLKTVFTDHSLF 121 (252)
Q Consensus 90 -h~~~~~~~-~~~~~~~~~~~~~~p~v~~~h~~~ 121 (252)
++..++.. ....+..+++..++|++-..+..|
T Consensus 70 IDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~ 103 (256)
T TIGR00715 70 VDATHPFAAQITTNATAVCKELGIPYVRFERPPL 103 (256)
T ss_pred EEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCC
Confidence 44444432 344466788999999988776544
No 123
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.01 E-value=1.3 Score=34.46 Aligned_cols=161 Identities=9% Similarity=-0.002 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHHHHHC--CcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCccc-c----cccch-----HHHHH
Q psy8013 12 GVEEHIFNLSQCLLQR--GHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILP-T----MVCSI-----PLVRH 79 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~----~~~~~-----~~l~~ 79 (252)
|=-+....+|..|.+. |.+|.+++.... ........|++.+.+|.........+. . ..... ..+..
T Consensus 23 GHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~--~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l~e~~~~Rs~lil~ 100 (400)
T COG4671 23 GHLRRALRIAHALVEDYLGFDILIISGGPP--AGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDLEETKKLRSQLILS 100 (400)
T ss_pred hHHHHHHHHHHHHhhcccCceEEEEeCCCc--cCCCCCcccCceEecCceEecCCCceeeeecCCCHHHHHHHHHHHHHH
Confidence 4557788999999998 999999998633 222334578888888876544321111 0 01111 13445
Q ss_pred HHhhCCCcEEEecCchhHHHH-H--HHHHHHhcCCcEEEEecCCCCCC-chhhHHHH-HHHHHhhcCCCEEEEechhhhh
Q psy8013 80 ILLREEISIVHGHSAFSALAH-E--TMMIARLLGLKTVFTDHSLFGFA-DSSAIVTN-KCLEISLAGCNHCICVSHIGKE 154 (252)
Q Consensus 80 ~~~~~~~Dvvh~~~~~~~~~~-~--~~~~~~~~~~p~v~~~h~~~~~~-~~~~~~~~-~~~~~~~~~~d~vi~~S~~~~~ 154 (252)
.++..+|||+.+....-++-. + .+-..+..+.+.|.-..+..... .....+.+ ..++.+-+..|.|.+..+-.-.
T Consensus 101 t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~D~p~~~~~~w~~~~~~~~I~r~yD~V~v~GdP~f~ 180 (400)
T COG4671 101 TAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIRDIPQELEADWRRAETVRLINRFYDLVLVYGDPDFY 180 (400)
T ss_pred HHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhhhchhhhccchhhhHHHHHHHHhheEEEEecCcccc
Confidence 567789999998874332211 1 11222333445555555542111 11111222 2234444458899998886665
Q ss_pred hHHHhhccCCC-ceEEccCCc
Q psy8013 155 NTVLRARVNHY-NVSVIPNAV 174 (252)
Q Consensus 155 ~~~~~~~~~~~-~i~vI~ngv 174 (252)
.+...+.+... +-.+.|-|.
T Consensus 181 d~~~~~~~~~~i~~k~~ytG~ 201 (400)
T COG4671 181 DPLTEFPFAPAIRAKMRYTGF 201 (400)
T ss_pred ChhhcCCccHhhhhheeEeEE
Confidence 56566665432 335666665
No 124
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=93.05 E-value=0.4 Score=41.82 Aligned_cols=33 Identities=9% Similarity=-0.023 Sum_probs=25.9
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 4 DFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 4 ~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
+..|-..||-++-.-+-.+..+..|....-+..
T Consensus 99 ~~lpiYsGGLG~LAgd~lksasdLg~P~vgvGl 131 (778)
T cd04299 99 ESLPIYSGGLGILAGDHLKAASDLGLPLVGVGL 131 (778)
T ss_pred CCCCccCchHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 334445899999999999999999987666554
No 125
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=92.24 E-value=0.54 Score=38.78 Aligned_cols=95 Identities=22% Similarity=0.098 Sum_probs=60.5
Q ss_pred CCcEEEecCchhHHHHHHHHHHH-hcCCcEEEEecCCCCCCchhhH--HHHHHHHHhhcCCCEEEEechhhhhhHHHhh-
Q psy8013 85 EISIVHGHSAFSALAHETMMIAR-LLGLKTVFTDHSLFGFADSSAI--VTNKCLEISLAGCNHCICVSHIGKENTVLRA- 160 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~~~~~~--~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~- 160 (252)
.-|+|-+|.+...+. +..+.+ ....++-+..|-.|+....... ..+.+++. +-.+|.|=..+...+++++...
T Consensus 132 ~~d~vWVhDYhL~ll--p~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r~~ll~g-lL~aDliGFqt~~y~~~Fl~~~~ 208 (487)
T TIGR02398 132 EGATVWVHDYNLWLV--PGYIRQLRPDLKIAFFHHTPFPSADVFNILPWREQIIGS-LLCCDYIGFHIPRYVENFVDAAR 208 (487)
T ss_pred CCCEEEEecchhhHH--HHHHHHhCCCCeEEEEeeCCCCChHHHhhCCchHHHHHH-HhcCCeEEeCCHHHHHHHHHHHH
Confidence 348999999775443 444433 3456788899988775543322 22233333 3459999999988888776422
Q ss_pred ---ccC--------------------------------CCceEEccCCccCCCCCCC
Q psy8013 161 ---RVN--------------------------------HYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 161 ---~~~--------------------------------~~~i~vI~ngvd~~~f~~~ 182 (252)
+.. .-++.++|.|||++.|.+.
T Consensus 209 r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~ 265 (487)
T TIGR02398 209 GLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSA 265 (487)
T ss_pred HHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHH
Confidence 110 1137899999999998654
No 126
>PLN02208 glycosyltransferase family protein
Probab=91.48 E-value=2.7 Score=34.43 Aligned_cols=98 Identities=13% Similarity=0.064 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceee--eeCCeEEEEeeccc---ccCC-C---ccccc---------ccc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRY--MTNGLKVYYCPIKT---FYNQ-S---ILPTM---------VCS 73 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~--~~~~~~v~~~~~~~---~~~~-~---~~~~~---------~~~ 73 (252)
|=-.-+.+||+.|+.+|++|+++++......-... ...++.+..++... .... . .+... ...
T Consensus 16 GHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~l~~~~~~~~~~~ 95 (442)
T PLN02208 16 GHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPISMDNLLSEALDLT 95 (442)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 44455789999999999999999965321110000 11245555554321 1100 0 00000 011
Q ss_pred hHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEE
Q psy8013 74 IPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTV 114 (252)
Q Consensus 74 ~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v 114 (252)
...+.++++..++|+|.+.. . ++ +..+++.+|+|.+
T Consensus 96 ~~~l~~~L~~~~~~cVV~D~-~-~w---a~~vA~e~giP~~ 131 (442)
T PLN02208 96 RDQVEAAVRALRPDLIFFDF-A-QW---IPEMAKEHMIKSV 131 (442)
T ss_pred HHHHHHHHhhCCCeEEEECC-c-Hh---HHHHHHHhCCCEE
Confidence 22355666667889888873 3 22 5667788899975
No 127
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=91.33 E-value=0.13 Score=31.62 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHhhccCCCCCChhhhHHHHHhcCChHHHHHHHH
Q psy8013 190 ETLIAGIESAISDLKNGRAISPFKCHETVKSLYNWVDVSERTE 232 (252)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~a~~~~ 232 (252)
+++.+.+...++...... .....+++.+.+.|+|+..++++.
T Consensus 50 ~el~~~i~~ll~~~~~~~-~ia~~a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 50 EELAEKIEYLLENPEERR-RIAKNARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 346777777777665544 567788899999999999999875
No 128
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=90.62 E-value=4.7 Score=30.92 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=65.1
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcc------e------eeeeCCeEEEEeecccccCCCcccccccchHHHH
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG------I------RYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVR 78 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~------~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~ 78 (252)
-|-.+.+..|.+.|.++||.|-|++-++..+.. + ....+|+-+..+|.... +.-.-...+...
T Consensus 62 aGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~-----lGGlS~at~~~i 136 (323)
T COG1703 62 AGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGT-----LGGLSRATREAI 136 (323)
T ss_pred CchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCcc-----chhhhHHHHHHH
Confidence 466788999999999999999999976433211 1 11244555555444322 122233445667
Q ss_pred HHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 79 HILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 79 ~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
.+++...+|+|++.+...+-+ -.-+.....+-++++..+.
T Consensus 137 ~~ldAaG~DvIIVETVGvGQs--ev~I~~~aDt~~~v~~pg~ 176 (323)
T COG1703 137 KLLDAAGYDVIIVETVGVGQS--EVDIANMADTFLVVMIPGA 176 (323)
T ss_pred HHHHhcCCCEEEEEecCCCcc--hhHHhhhcceEEEEecCCC
Confidence 778889999999987544333 2234555677777777764
No 129
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=90.53 E-value=0.69 Score=36.76 Aligned_cols=144 Identities=10% Similarity=0.041 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEE-EeecccccC----CCcccccccchHHHHHHHhhCCCcE
Q psy8013 14 EEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVY-YCPIKTFYN----QSILPTMVCSIPLVRHILLREEISI 88 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~Dv 88 (252)
..+..+|+++|.+.+-++.++...++. . ...|++.. ........+ ...++.++.....+.+.+...+||+
T Consensus 11 D~~ga~Li~~Lk~~~p~~~~~GvGG~~-M----~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~ 85 (373)
T PF02684_consen 11 DLHGARLIRALKARDPDIEFYGVGGPR-M----QAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDV 85 (373)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEechH-H----HhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 457788999999987788888776332 1 11333222 111111000 0012334444556677778899999
Q ss_pred EEecCchhHHHHHHHHHHHhcCCc--EEEEecC-CCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCC
Q psy8013 89 VHGHSAFSALAHETMMIARLLGLK--TVFTDHS-LFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHY 165 (252)
Q Consensus 89 vh~~~~~~~~~~~~~~~~~~~~~p--~v~~~h~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~ 165 (252)
+..-.... +.+.....++..++| +|+.+-- .|-+ ..+..+.+-+.+|.++|+=++..+.+ ...|+
T Consensus 86 vIlID~pg-FNlrlak~lk~~~~~~~viyYI~PqvWAW-------r~~R~~~i~~~~D~ll~ifPFE~~~y-~~~g~--- 153 (373)
T PF02684_consen 86 VILIDYPG-FNLRLAKKLKKRGIPIKVIYYISPQVWAW-------RPGRAKKIKKYVDHLLVIFPFEPEFY-KKHGV--- 153 (373)
T ss_pred EEEeCCCC-ccHHHHHHHHHhCCCceEEEEECCceeee-------CccHHHHHHHHHhheeECCcccHHHH-hccCC---
Confidence 98887554 333345556667777 6554432 1211 11223444455899999998888765 55564
Q ss_pred ceEEccCCc
Q psy8013 166 NVSVIPNAV 174 (252)
Q Consensus 166 ~i~vI~ngv 174 (252)
+++.|.|+.
T Consensus 154 ~~~~VGHPl 162 (373)
T PF02684_consen 154 PVTYVGHPL 162 (373)
T ss_pred CeEEECCcc
Confidence 677888875
No 130
>PLN02448 UDP-glycosyltransferase family protein
Probab=90.24 E-value=3.7 Score=33.92 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHC--CcEEEEEeccCCCCc-ceeeeeCCeEEEEeecccccC-C--Cccccccc-----chHHHHHHHh
Q psy8013 14 EEHIFNLSQCLLQR--GHKVIVLTHSYKDRV-GIRYMTNGLKVYYCPIKTFYN-Q--SILPTMVC-----SIPLVRHILL 82 (252)
Q Consensus 14 ~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~--~~~~~~~~-----~~~~l~~~~~ 82 (252)
-.=+.+|++.|+.+ |+.|+++++...... .......++++..+|...... . ......+. ....+..+++
T Consensus 24 i~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (459)
T PLN02448 24 INPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADFPGFLEAVMTKMEAPFEQLLD 103 (459)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCHHHHHHHHHHHhHHHHHHHHH
Confidence 34578999999999 999999998642111 100012367887776421110 0 00001011 1123344454
Q ss_pred h--CCCcEEEecCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 83 R--EEISIVHGHSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 83 ~--~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
+ .++|.|....... + +..+++..|+|.+.
T Consensus 104 ~~~~~~~~VI~D~~~~-w---a~~vA~~lgIP~v~ 134 (459)
T PLN02448 104 RLEPPVTAIVADTYLF-W---AVGVGNRRNIPVAS 134 (459)
T ss_pred hcCCCcEEEEECCccH-H---HHHHHHHhCCCeEE
Confidence 4 3568887765433 2 66678888998654
No 131
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=89.97 E-value=0.67 Score=39.04 Aligned_cols=92 Identities=9% Similarity=-0.034 Sum_probs=57.3
Q ss_pred ccchHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCC--cEEEEecCC-CCCCchhhHHHHHHHHHhhcCCCEEEE
Q psy8013 71 VCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGL--KTVFTDHSL-FGFADSSAIVTNKCLEISLAGCNHCIC 147 (252)
Q Consensus 71 ~~~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~--p~v~~~h~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~ 147 (252)
......+.+.+++.+||++.+-+... +.......++..|+ |+|+.+--. |.+ ..+..+.+-+..|.++|
T Consensus 296 ~~~~~~l~~~i~~~kPD~vIlID~Pg-FNlrLAK~lkk~Gi~ipviyYVsPqVWAW-------R~~Rikki~k~vD~ll~ 367 (608)
T PRK01021 296 WYRYRKLYKTILKTNPRTVICIDFPD-FHFLLIKKLRKRGYKGKIVHYVCPSIWAW-------RPKRKTILEKYLDLLLL 367 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCC-CCHHHHHHHHhcCCCCCEEEEECccceee-------CcchHHHHHHHhhhhee
Confidence 33445566777788999998876544 32224455666785 877654322 211 11223445556899999
Q ss_pred echhhhhhHHHhhccCCCceEEccCCc
Q psy8013 148 VSHIGKENTVLRARVNHYNVSVIPNAV 174 (252)
Q Consensus 148 ~S~~~~~~~~~~~~~~~~~i~vI~ngv 174 (252)
+=++..+.+ ++.|+ +++.|.|+.
T Consensus 368 IfPFE~~~y-~~~gv---~v~yVGHPL 390 (608)
T PRK01021 368 ILPFEQNLF-KDSPL---RTVYLGHPL 390 (608)
T ss_pred cCccCHHHH-HhcCC---CeEEECCcH
Confidence 999888765 55565 677777765
No 132
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.77 E-value=1.9 Score=31.73 Aligned_cols=96 Identities=9% Similarity=0.061 Sum_probs=52.9
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEE
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVH 90 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh 90 (252)
-|.+++-..+|+.|.+.||+|.++-.+.+..........+..++..... ....|.+ +--.+.|++.
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t-------------~~~~L~~-agi~~aD~vv 71 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDAT-------------DEDVLEE-AGIDDADAVV 71 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCC-------------CHHHHHh-cCCCcCCEEE
Confidence 4788899999999999999999988763211110011122333322211 1112222 2234788887
Q ss_pred ecCchhHHHHH-HHHHHHhcCCcEE-EEecCC
Q psy8013 91 GHSAFSALAHE-TMMIARLLGLKTV-FTDHSL 120 (252)
Q Consensus 91 ~~~~~~~~~~~-~~~~~~~~~~p~v-~~~h~~ 120 (252)
+-......... +..+.+.+|+|.+ ...++.
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 77654333222 4455566899864 455553
No 133
>PLN00016 RNA-binding protein; Provisional
Probab=89.47 E-value=3.8 Score=32.77 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
||.+..-..|++.|.+.||+|++++...
T Consensus 63 GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 63 GGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred CCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 7778888899999999999999998763
No 134
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=89.13 E-value=5.9 Score=27.68 Aligned_cols=89 Identities=21% Similarity=0.170 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||.+..-..+++.|.++||+|++++.+...... ..++++...... ....+.+.++ +.|+|
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----~~~~~~~~~d~~-------------d~~~~~~al~--~~d~v 64 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----SPGVEIIQGDLF-------------DPDSVKAALK--GADAV 64 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----CTTEEEEESCTT-------------CHHHHHHHHT--TSSEE
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----ccccccceeeeh-------------hhhhhhhhhh--hcchh
Confidence 3677777888999999999999999987332111 556666554332 1234555555 67877
Q ss_pred EecCch----hHHHHHHHHHHHhcCCcEEEEe
Q psy8013 90 HGHSAF----SALAHETMMIARLLGLKTVFTD 117 (252)
Q Consensus 90 h~~~~~----~~~~~~~~~~~~~~~~p~v~~~ 117 (252)
...... .........+++..+++.++.+
T Consensus 65 i~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~ 96 (183)
T PF13460_consen 65 IHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYL 96 (183)
T ss_dssp EECCHSTTTHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccceee
Confidence 665431 1111123344566788765543
No 135
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=88.99 E-value=3.2 Score=34.19 Aligned_cols=96 Identities=19% Similarity=0.143 Sum_probs=61.2
Q ss_pred CCcEEEecCchhHHHHHHHHHH-HhcCCcEEEEecCCCCCCchhhHHH--HHHHHHhhcCCCEEEEechhhhhhHHHhhc
Q psy8013 85 EISIVHGHSAFSALAHETMMIA-RLLGLKTVFTDHSLFGFADSSAIVT--NKCLEISLAGCNHCICVSHIGKENTVLRAR 161 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~~~~~~~--~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~ 161 (252)
.=|+|-+|.....+. ..++. +....++.+..|-.|+.......+. ..+++ .+-.||.|-..++..++++.....
T Consensus 147 ~gDiIWVhDYhL~L~--P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP~r~eIl~-gll~~dligFqt~~y~~nF~~~~~ 223 (486)
T COG0380 147 PGDIIWVHDYHLLLV--PQMLRERIPDAKIGFFLHIPFPSSEVFRCLPWREEILE-GLLGADLIGFQTESYARNFLDLCS 223 (486)
T ss_pred CCCEEEEEechhhhh--HHHHHHhCCCceEEEEEeCCCCCHHHHhhCchHHHHHH-HhhcCCeeEecCHHHHHHHHHHHH
Confidence 349999999876443 33443 3334578889999887655433322 22233 334599999999988888753321
Q ss_pred c-----------------CCCceEEccCCccCCCCCCCc
Q psy8013 162 V-----------------NHYNVSVIPNAVDTTVFVPDV 183 (252)
Q Consensus 162 ~-----------------~~~~i~vI~ngvd~~~f~~~~ 183 (252)
- ...++..+|-|||+..|....
T Consensus 224 r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~ 262 (486)
T COG0380 224 RLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERAL 262 (486)
T ss_pred HhccccccccccccccCCceEEEEEEeeecCHHHHHHhh
Confidence 0 113567788899998876554
No 136
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=88.82 E-value=6.3 Score=27.56 Aligned_cols=106 Identities=14% Similarity=-0.014 Sum_probs=64.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcc----eeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHh
Q psy8013 7 YPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG----IRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILL 82 (252)
Q Consensus 7 ~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (252)
.+...|... +..+.+...+.|..|.++....+.... .....+++.+......... ......+.+.+.
T Consensus 26 ~~r~~g~dl-~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~--------~~~~~~i~~~I~ 96 (171)
T cd06533 26 PERVTGSDL-MPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFG--------PEEEEEIIERIN 96 (171)
T ss_pred CcccCcHHH-HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCC--------hhhHHHHHHHHH
Confidence 345667764 678888888889999999776332111 1224566776654322211 111223667788
Q ss_pred hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCC
Q psy8013 83 REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLF 121 (252)
Q Consensus 83 ~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~ 121 (252)
..+||+|.+-...+---..+.......+.++++++-+.+
T Consensus 97 ~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~~vG~~~ 135 (171)
T cd06533 97 ASGADILFVGLGAPKQELWIARHKDRLPVPVAIGVGGSF 135 (171)
T ss_pred HcCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEeceee
Confidence 899999988875543332355555556778888877764
No 137
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=88.77 E-value=1.5 Score=39.21 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=60.6
Q ss_pred CcEEEecCchhHHHHHHHHHHH-hcCCcEEEEecCCCCCCchhhHH--HHHHHHHhhcCCCEEEEechhhhhhHHHhh--
Q psy8013 86 ISIVHGHSAFSALAHETMMIAR-LLGLKTVFTDHSLFGFADSSAIV--TNKCLEISLAGCNHCICVSHIGKENTVLRA-- 160 (252)
Q Consensus 86 ~Dvvh~~~~~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~~~~~~~--~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~-- 160 (252)
-|+|-+|.+...+. ..++.+ ....++-+..|-.|+.......+ ...+++. +-.+|.|=..+....++++...
T Consensus 232 gD~VWVHDYHL~Ll--P~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~r~elL~g-lL~aDlIGFqT~~y~rhFl~~c~r 308 (934)
T PLN03064 232 GDVVWCHDYHLMFL--PKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPSRSELLRS-VLAADLVGFHTYDYARHFVSACTR 308 (934)
T ss_pred CCEEEEecchhhHH--HHHHHHhCCCCcEEEEecCCCCChHHHhhCCcHHHHHHH-HhcCCeEEeCCHHHHHHHHHHHHH
Confidence 37999999875443 444443 34678889999988755443322 2233333 3359999999998888876422
Q ss_pred --ccC-----------CCceEEccCCccCCCCCCC
Q psy8013 161 --RVN-----------HYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 161 --~~~-----------~~~i~vI~ngvd~~~f~~~ 182 (252)
+.. .-++.+.|-|||.+.|...
T Consensus 309 lLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~ 343 (934)
T PLN03064 309 ILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRA 343 (934)
T ss_pred HhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHH
Confidence 111 1136678999999988654
No 138
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=87.75 E-value=7.5 Score=27.19 Aligned_cols=106 Identities=15% Similarity=0.042 Sum_probs=66.7
Q ss_pred CCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCc----ceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhh
Q psy8013 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRV----GIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLR 83 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (252)
....|.. .+..+.+...+.|..|.++..+.+... ......+++.+.-...... .-.....+...+++
T Consensus 29 ~rv~g~d-l~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f--------~~~~~~~i~~~I~~ 99 (172)
T PF03808_consen 29 ERVTGSD-LFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF--------DEEEEEAIINRINA 99 (172)
T ss_pred cccCHHH-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC--------ChhhHHHHHHHHHH
Confidence 3456665 467788888888899999987643211 1122446677765443322 11234467777888
Q ss_pred CCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCC
Q psy8013 84 EEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFG 122 (252)
Q Consensus 84 ~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~ 122 (252)
.+||+|.+-...+---..+.......+.++++++-+.+.
T Consensus 100 ~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i~vG~~~d 138 (172)
T PF03808_consen 100 SGPDIVFVGLGAPKQERWIARHRQRLPAGVIIGVGGAFD 138 (172)
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECchhh
Confidence 999999888765533333556666778888888777643
No 139
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=87.50 E-value=1.9 Score=34.04 Aligned_cols=142 Identities=11% Similarity=0.056 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEE----eeccccc-CCCcccccccchHHHHHHHhhCCCcEEE
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYY----CPIKTFY-NQSILPTMVCSIPLVRHILLREEISIVH 90 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~----~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~Dvvh 90 (252)
....|.++|.++--++.++.-.++. . ...|++... +...... -...++..+...+.+.+.+...+||++.
T Consensus 16 lGa~LikaLk~~~~~~efvGvgG~~-m----~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i~~~kpD~~i 90 (381)
T COG0763 16 LGAGLIKALKARYPDVEFVGVGGEK-M----EAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYILANKPDVLI 90 (381)
T ss_pred HHHHHHHHHHhhCCCeEEEEeccHH-H----HhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 4567888887762378887765321 1 112211110 0000000 0001223333344555666688999988
Q ss_pred ecCchhHHHHHHHHHHHhcC--CcEEEEecCC-CCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCce
Q psy8013 91 GHSAFSALAHETMMIARLLG--LKTVFTDHSL-FGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNV 167 (252)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~--~p~v~~~h~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i 167 (252)
+-.... +........+..+ +|+|+.+--. |.+ . ......+.+.+|.++++=.+..+.+ .+.+. .+
T Consensus 91 ~IDsPd-Fnl~vak~lrk~~p~i~iihYV~PsVWAW---r----~~Ra~~i~~~~D~lLailPFE~~~y-~k~g~---~~ 158 (381)
T COG0763 91 LIDSPD-FNLRVAKKLRKAGPKIKIIHYVSPSVWAW---R----PKRAVKIAKYVDHLLAILPFEPAFY-DKFGL---PC 158 (381)
T ss_pred EeCCCC-CchHHHHHHHHhCCCCCeEEEECcceeee---c----hhhHHHHHHHhhHeeeecCCCHHHH-HhcCC---Ce
Confidence 877544 2222444445555 7877654422 211 1 1113445566999999999988765 67676 37
Q ss_pred EEccCCc
Q psy8013 168 SVIPNAV 174 (252)
Q Consensus 168 ~vI~ngv 174 (252)
+.|.|..
T Consensus 159 ~yVGHpl 165 (381)
T COG0763 159 TYVGHPL 165 (381)
T ss_pred EEeCChh
Confidence 7777765
No 140
>PLN02173 UDP-glucosyl transferase family protein
Probab=87.06 E-value=9.9 Score=31.34 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeeccccc-C-CC--ccccccc-----chHHHHHHHh
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFY-N-QS--ILPTMVC-----SIPLVRHILL 82 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~--~~~~~~~-----~~~~l~~~~~ 82 (252)
|=-.-+.+||+.|+.+|+.||++++...-.........++++..+|..... . .. .....+. ....+.++++
T Consensus 17 GHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (449)
T PLN02173 17 GHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQNFKTFGSKTVADIIR 96 (449)
T ss_pred ccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHHHHHhhhHHHHHHHH
Confidence 444567899999999999999999863211100111235777777642111 0 00 0111111 1223445555
Q ss_pred h----CCC-cEEEecCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 83 R----EEI-SIVHGHSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 83 ~----~~~-Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
. .+| +.|.+....+ + +.-+++..|+|.+.
T Consensus 97 ~~~~~~~Pv~cvV~D~f~~-W---a~dVA~elgIP~v~ 130 (449)
T PLN02173 97 KHQSTDNPITCIVYDSFMP-W---ALDLAREFGLAAAP 130 (449)
T ss_pred HhhccCCCceEEEECCcch-h---HHHHHHHhCCCEEE
Confidence 3 245 7776665443 2 55667888999754
No 141
>PLN02670 transferase, transferring glycosyl groups
Probab=86.96 E-value=6.1 Score=32.76 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce---eeeeCCeEEEEeecccc---cCC----Cccc-----ccccc---
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI---RYMTNGLKVYYCPIKTF---YNQ----SILP-----TMVCS--- 73 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---~~~~~~~~v~~~~~~~~---~~~----~~~~-----~~~~~--- 73 (252)
|=-.-+.+|++.|+.+|..||++++........ .....++++..+|.+.. ... ...+ .+...
T Consensus 18 GHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~~~~~~~~~~~~~~~ 97 (472)
T PLN02670 18 GHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDVPYTKQQLLKKAFDL 97 (472)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccccchhhHHHHHHHHHH
Confidence 333457899999999999999999864311111 11123578887774321 100 0111 00011
Q ss_pred -hHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEE
Q psy8013 74 -IPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFT 116 (252)
Q Consensus 74 -~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~ 116 (252)
...+.+++++.+++.|......+ + +.-+++..|+|.++.
T Consensus 98 ~~~~~~~~l~~~~~~cvI~D~f~~-w---a~~vA~~~gIP~~~f 137 (472)
T PLN02670 98 LEPPLTTFLETSKPDWIIYDYASH-W---LPSIAAELGISKAFF 137 (472)
T ss_pred hHHHHHHHHHhCCCcEEEECCcch-h---HHHHHHHcCCCEEEE
Confidence 11234555556788777666443 2 566788889986543
No 142
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=86.54 E-value=2.3 Score=35.03 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=59.1
Q ss_pred CCcEEEecCchhHHHHHHHHHH-HhcCCcEEEEecCCCCCCchhhHH--HHHHHHHhhcCCCEEEEechhhhhhHHHhh-
Q psy8013 85 EISIVHGHSAFSALAHETMMIA-RLLGLKTVFTDHSLFGFADSSAIV--TNKCLEISLAGCNHCICVSHIGKENTVLRA- 160 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~~~~~~--~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~- 160 (252)
.-|+|-+|.+...+. +..+. +....++-+..|-.|+.......+ .+.+++. +-.+|.|-..+....++++...
T Consensus 123 ~~D~VWVHDYhL~ll--p~~LR~~~~~~~IgFFlHiPFPs~eifr~LP~r~eil~g-lL~aDlIGFqt~~y~rnFl~~~~ 199 (474)
T PRK10117 123 DDDIIWIHDYHLLPF--ASELRKRGVNNRIGFFLHIPFPTPEIFNALPPHDELLEQ-LCDYDLLGFQTENDRLAFLDCLS 199 (474)
T ss_pred CCCEEEEeccHhhHH--HHHHHHhCCCCcEEEEEeCCCCChHHHhhCCChHHHHHH-HHhCccceeCCHHHHHHHHHHHH
Confidence 348999999875433 33333 334568889999987755433222 2233333 3358999999988887776421
Q ss_pred ---ccC------------CCceEEccCCccCCCCCCC
Q psy8013 161 ---RVN------------HYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 161 ---~~~------------~~~i~vI~ngvd~~~f~~~ 182 (252)
+.. .-++.+.|-|||.+.|...
T Consensus 200 ~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~ 236 (474)
T PRK10117 200 NLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQ 236 (474)
T ss_pred HHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHH
Confidence 110 1136778899999887543
No 143
>PLN03007 UDP-glucosyltransferase family protein
Probab=86.36 E-value=6.9 Score=32.57 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 14 EEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
-.=+.+|++.|+.+|++|+++++..
T Consensus 19 i~P~L~LAk~L~~rG~~VT~vtt~~ 43 (482)
T PLN03007 19 MIPTLDMAKLFSSRGAKSTILTTPL 43 (482)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCC
Confidence 3457899999999999999999864
No 144
>PLN02210 UDP-glucosyl transferase
Probab=86.31 E-value=6.8 Score=32.36 Aligned_cols=100 Identities=8% Similarity=0.028 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHH--HHHCCcEEEEEeccCCCCccee--eeeCCeEEEEeecccccCC-Cccccccc-----chHHHHHHH
Q psy8013 12 GVEEHIFNLSQC--LLQRGHKVIVLTHSYKDRVGIR--YMTNGLKVYYCPIKTFYNQ-SILPTMVC-----SIPLVRHIL 81 (252)
Q Consensus 12 G~~~~~~~l~~~--L~~~G~~V~v~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~-~~~~~~~~-----~~~~l~~~~ 81 (252)
|=-.-+.+|++. |+.+|+.|+++++......-.. .....+++..+|....... ......+. ....+.+++
T Consensus 20 GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~~~~~~~~~~~~~~~l~~~l 99 (456)
T PLN02210 20 GHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDPRAPETLLKSLNKVGAKNLSKII 99 (456)
T ss_pred ccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcccCHHHHHHHHHHhhhHHHHHHH
Confidence 444557899999 5589999999998642111000 0012233333331100000 00001111 122455666
Q ss_pred hhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 82 LREEISIVHGHSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 82 ~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
...+||.|....... + +.-+++..|+|.+.
T Consensus 100 ~~~~~~~vI~D~~~~-w---~~~vA~~lgIP~~~ 129 (456)
T PLN02210 100 EEKRYSCIISSPFTP-W---VPAVAAAHNIPCAI 129 (456)
T ss_pred hcCCCcEEEECCcch-h---HHHHHHHhCCCEEE
Confidence 666888887765443 2 55667778888743
No 145
>PLN00414 glycosyltransferase family protein
Probab=86.27 E-value=11 Score=31.04 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce--eeeeCCeEEEEeecccc---cCC-Cc---ccc-----cccc----
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI--RYMTNGLKVYYCPIKTF---YNQ-SI---LPT-----MVCS---- 73 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~~~~~~~~v~~~~~~~~---~~~-~~---~~~-----~~~~---- 73 (252)
|=-.=+.+|++.|+.+|++|+++++......-. .....++.+..++.+.. ... .. ++. ....
T Consensus 16 GHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~~~~~~~~~a~~~l 95 (446)
T PLN00414 16 GHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPNSTKKPIFDAMDLL 95 (446)
T ss_pred chHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchhhHHHHHHHHHHHH
Confidence 334557899999999999999999753211100 00112356644432210 000 00 000 1111
Q ss_pred hHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 74 IPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 74 ~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
...+.+++...+||.|.... . .+ +.-+++.+|+|.+.
T Consensus 96 ~~~l~~~L~~~~p~cVV~D~-~-~w---a~~vA~~lgIP~~~ 132 (446)
T PLN00414 96 RDQIEAKVRALKPDLIFFDF-V-HW---VPEMAKEFGIKSVN 132 (446)
T ss_pred HHHHHHHHhcCCCeEEEECC-c-hh---HHHHHHHhCCCEEE
Confidence 12344555566788877763 2 22 66678888999754
No 146
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=85.77 E-value=5.2 Score=30.34 Aligned_cols=93 Identities=17% Similarity=0.105 Sum_probs=52.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHH
Q psy8013 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHIL 81 (252)
Q Consensus 2 v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (252)
+++..+-..+|=-..+..||++|.++|..+..++....+..... ..+++.+.... ....+
T Consensus 6 ~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~-~~~~f~~~~~~-------------------~~n~i 65 (318)
T COG3980 6 RCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHK-VYEGFKVLEGR-------------------GNNLI 65 (318)
T ss_pred EecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhh-hhhhccceeee-------------------ccccc
Confidence 45666555567778899999999999988888887632211000 11111111110 01146
Q ss_pred hhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 82 LREEISIVHGHSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 82 ~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
+..++|++......... .....++...+.|+|+
T Consensus 66 k~~k~d~lI~Dsygl~~-dd~k~ik~e~~~k~l~ 98 (318)
T COG3980 66 KEEKFDLLIFDSYGLNA-DDFKLIKEEAGSKILI 98 (318)
T ss_pred ccccCCEEEEeccCCCH-HHHHHHHHHhCCcEEE
Confidence 67788888777654322 1244444456777655
No 147
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=85.61 E-value=14 Score=28.34 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=79.4
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHh
Q psy8013 3 SDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILL 82 (252)
Q Consensus 3 ~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (252)
+.+|--..-|-|-....+.++|. .+.++++++.+..... ...|++-. +. .....+.+.++
T Consensus 4 ~GyyG~~N~GDe~~l~~~l~~l~-~~~~~~v~s~~p~~~~----~~~~v~~~--~r-------------~~~~~~~~~l~ 63 (298)
T TIGR03609 4 CGYYGFGNLGDEALLAALLRELP-PGVEPTVLSNDPAETA----KLYGVEAV--NR-------------RSLLAVLRALR 63 (298)
T ss_pred EEecCCCCcchHHHHHHHHHhcC-CCCeEEEecCChHHHH----hhcCceEE--cc-------------CCHHHHHHHHH
Confidence 34454445688888888888885 5788888887532111 11133211 10 11223334444
Q ss_pred hCCCcEEEecCc---------hhHHH-HHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhh
Q psy8013 83 REEISIVHGHSA---------FSALA-HETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIG 152 (252)
Q Consensus 83 ~~~~Dvvh~~~~---------~~~~~-~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 152 (252)
+.|++.+-+. ...+. .....+++..|.|+++.-.+.-+... ...+++.+..++++|.+.+=.+..
T Consensus 64 --~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~~---~~~r~~~~~~l~~~~~i~vRD~~S 138 (298)
T TIGR03609 64 --RADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLRR---RLSRWLVRRVLRGCRAISVRDAAS 138 (298)
T ss_pred --HCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCCcCC---HHHHHHHHHHHccCCEEEEeCHHH
Confidence 5576654431 11111 11335567789999888777644332 344566788899999988877776
Q ss_pred hhhHHHhhccCCCceEEccC
Q psy8013 153 KENTVLRARVNHYNVSVIPN 172 (252)
Q Consensus 153 ~~~~~~~~~~~~~~i~vI~n 172 (252)
.+.+ ...++ ++.+.|-
T Consensus 139 ~~~l-~~~g~---~i~~~~D 154 (298)
T TIGR03609 139 YRLL-KRLGI---PAELAAD 154 (298)
T ss_pred HHHH-HHhCC---CceEeCC
Confidence 6644 55665 4555543
No 148
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=84.67 E-value=6.6 Score=29.76 Aligned_cols=122 Identities=15% Similarity=0.112 Sum_probs=58.6
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhh-CCCcEE
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLR-EEISIV 89 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~Dvv 89 (252)
.|+.++..++-..+.+.||+++++...... .... .....+...++. .....+.+.+++ +.+||+
T Consensus 1 CGVTr~a~e~~~wf~KNg~~~~i~~a~e~s-ftR~-dsH~~~~~si~k-------------~~~~e~de~v~~vN~yDI~ 65 (355)
T PF11440_consen 1 CGVTRNALEMRDWFDKNGVEFTIVSADEKS-FTRP-DSHDSKSFSIPK-------------YLAKEYDETVKKVNDYDIV 65 (355)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEETSS---TTT-TSSS-TTTEEEE--------------TTTHHHHHHHHHTSSSEE
T ss_pred CCccccHHHHHHHHHhcCCeeEEEEecccc-cCCc-cccccceeeeeh-------------hhHHHHHHHHHHhhccCEE
Confidence 388999999999999999999999886321 0000 000000001110 111233333332 589999
Q ss_pred EecCchhHH------HHHHHHHHHhc-CCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechh
Q psy8013 90 HGHSAFSAL------AHETMMIARLL-GLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHI 151 (252)
Q Consensus 90 h~~~~~~~~------~~~~~~~~~~~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~ 151 (252)
..++....- ...-.++.+.. .+.+|...|+.. ....-....+..+++.+|.|.+-|..
T Consensus 66 m~nSvPa~~vqE~~iNnY~kii~~Ik~~ik~V~~~Hdh~----~lsI~rn~~le~~m~~~DvIfshs~~ 130 (355)
T PF11440_consen 66 MFNSVPATKVQEAIINNYEKIIKKIKPSIKVVGFMHDHN----KLSIDRNPYLEGTMNEMDVIFSHSDN 130 (355)
T ss_dssp EEEE--BTTS-HHHHHHHHHHHHCS-TTSEEEEEE---S----HHHHTTBSSHHHHHHH-SEEEES-TT
T ss_pred EEecccCchHHHHHHHHHHHHHHhccccceeEEEeeccc----eeeccccccHHHHHHhhcEEEecccc
Confidence 888643221 11111111111 244678888752 11111112256778889999998874
No 149
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=82.29 E-value=5 Score=30.81 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcc-eeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCc-
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG-IRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEIS- 87 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~D- 87 (252)
.||++-.--..+.+|.+.|++|.|+=.-..+... ..... +++ ....+.....|.+.+.+++||
T Consensus 6 tGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~--~~f-------------~~gDi~D~~~L~~vf~~~~ida 70 (329)
T COG1087 6 TGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQ--FKF-------------YEGDLLDRALLTAVFEENKIDA 70 (329)
T ss_pred ecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhcc--Cce-------------EEeccccHHHHHHHHHhcCCCE
Confidence 4888888888999999999999998543222111 00000 111 112234455788999999999
Q ss_pred EEEec
Q psy8013 88 IVHGH 92 (252)
Q Consensus 88 vvh~~ 92 (252)
|+|+-
T Consensus 71 ViHFA 75 (329)
T COG1087 71 VVHFA 75 (329)
T ss_pred EEECc
Confidence 45665
No 150
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=81.75 E-value=15 Score=30.64 Aligned_cols=100 Identities=11% Similarity=0.134 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHH-HCCcEEEEEeccCCCCc-cee-eeeCCeEEEEeecccccC----CC-cccccccc----hHHHHH
Q psy8013 12 GVEEHIFNLSQCLL-QRGHKVIVLTHSYKDRV-GIR-YMTNGLKVYYCPIKTFYN----QS-ILPTMVCS----IPLVRH 79 (252)
Q Consensus 12 G~~~~~~~l~~~L~-~~G~~V~v~~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~----~~-~~~~~~~~----~~~l~~ 79 (252)
|=-.=+.+|++.|+ .+|+.||++++...... ... ....++.+..+|...... .. ........ ...+.+
T Consensus 17 GHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~~~~~~~~~~~~~~~~~~~~~ 96 (481)
T PLN02992 17 GHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPSAHVVTKIGVIMREAVPTLRS 96 (481)
T ss_pred chHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCCccHHHHHHHHHHHhHHHHHH
Confidence 33345689999998 68999999998743211 001 111357777777532110 00 00011111 123455
Q ss_pred HHhhC--CCcEEEecCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 80 ILLRE--EISIVHGHSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 80 ~~~~~--~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
++++. +|+.|.+....+ + +.-+++.+|+|.++
T Consensus 97 ~l~~~~~~p~cvV~D~f~~-W---a~dVA~elgIP~v~ 130 (481)
T PLN02992 97 KIAEMHQKPTALIVDLFGT-D---ALCLGGEFNMLTYI 130 (481)
T ss_pred HHHhcCCCCeEEEECCcch-h---HHHHHHHcCCCEEE
Confidence 56542 577666665443 2 55677778888654
No 151
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=81.22 E-value=8.5 Score=27.84 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecC
Q psy8013 14 EEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS 93 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~ 93 (252)
+.....-++.|.+.|.+|+|+++.............++..+.-.. . ...+ ..+|+|.+..
T Consensus 18 G~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-------------~-----~~dl--~~~~lVi~at 77 (205)
T TIGR01470 18 GDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCF-------------D-----ADIL--EGAFLVIAAT 77 (205)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-------------C-----HHHh--CCcEEEEECC
Confidence 445677889999999999999986432111110111222211100 0 0111 3688888776
Q ss_pred chhHHHHHHHHHHHhcCCcE
Q psy8013 94 AFSALAHETMMIARLLGLKT 113 (252)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~p~ 113 (252)
....+.......++..++++
T Consensus 78 ~d~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 78 DDEELNRRVAHAARARGVPV 97 (205)
T ss_pred CCHHHHHHHHHHHHHcCCEE
Confidence 55434433556667777775
No 152
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=80.66 E-value=16 Score=25.19 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHC-CcEEEEEeccCCCCccee----eeeCCe-EEEEeecccccCCCcccccccchHHHHHHHhhCCC
Q psy8013 13 VEEHIFNLSQCLLQR-GHKVIVLTHSYKDRVGIR----YMTNGL-KVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEI 86 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~----~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (252)
...-+...++.|++. |.+|++++.......... ....|. +++.++....... ..-.....+.+++++.+|
T Consensus 16 ~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~----~~~~~a~~l~~~~~~~~~ 91 (164)
T PF01012_consen 16 VSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEY----DPEAYADALAELIKEEGP 91 (164)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-----HHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCcccccc----CHHHHHHHHHHHHHhcCC
Confidence 345567788899875 789999888731222111 112454 6777765433210 112234567888899999
Q ss_pred cEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 87 SIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 87 Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
|+|.+......-. ++..++..++.|++..+-+.
T Consensus 92 ~lVl~~~t~~g~~-la~~lA~~L~~~~v~~v~~l 124 (164)
T PF01012_consen 92 DLVLFGSTSFGRD-LAPRLAARLGAPLVTDVTDL 124 (164)
T ss_dssp SEEEEESSHHHHH-HHHHHHHHHT-EEEEEEEEE
T ss_pred CEEEEcCcCCCCc-HHHHHHHHhCCCccceEEEE
Confidence 9998887554333 46677777899998776654
No 153
>KOG3742|consensus
Probab=80.11 E-value=0.41 Score=38.30 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=51.7
Q ss_pred CcEEEecCchhHHHHHHHHHHHhcCCc--EEEEecCCC-C------------------CC--chhhHHHHHH-HH-Hhhc
Q psy8013 86 ISIVHGHSAFSALAHETMMIARLLGLK--TVFTDHSLF-G------------------FA--DSSAIVTNKC-LE-ISLA 140 (252)
Q Consensus 86 ~Dvvh~~~~~~~~~~~~~~~~~~~~~p--~v~~~h~~~-~------------------~~--~~~~~~~~~~-~~-~~~~ 140 (252)
.-|.|.|.|..+. ++.+++..+++ .|+|.|... + .. ...+.++.++ ++ ....
T Consensus 175 ~vVahFHEW~AGV---gL~l~R~rrl~iaTifTTHATLLGRyLCA~~~DfYNnLd~f~vD~EAGkr~IYHrYC~ERaa~h 251 (692)
T KOG3742|consen 175 AVVAHFHEWQAGV---GLILCRARRLDIATIFTTHATLLGRYLCAGNVDFYNNLDSFDVDKEAGKRQIYHRYCLERAAAH 251 (692)
T ss_pred HHHHHHHHHHhcc---chheehhcccceEEEeehhHHHHHHHHhcccchhhhchhhcccchhhccchhHHHHHHHHHhhh
Confidence 3455888887765 44555555544 577888651 0 00 0112233333 33 3444
Q ss_pred CCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCC
Q psy8013 141 GCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 141 ~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~ 182 (252)
.|+...+||+-..-+. +++ +..++=.+.|||.+...|+.-
T Consensus 252 ~AhVFTTVSeITa~EA-eHl-LkRKPD~itPNGLNV~KFsA~ 291 (692)
T KOG3742|consen 252 TAHVFTTVSEITALEA-EHL-LKRKPDVITPNGLNVKKFSAV 291 (692)
T ss_pred hhhhhhhHHHHHHHHH-HHH-HhcCCCeeCCCCcceeehhHH
Confidence 4888999998655332 221 223344688999999888653
No 154
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=79.97 E-value=8.5 Score=28.26 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||.+..-..+++.|.+.|++|.+++..............|+++...+.. ....|.+.++ +.|.|
T Consensus 4 ~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~-------------~~~~l~~al~--g~d~v 68 (233)
T PF05368_consen 4 TGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYD-------------DPESLVAALK--GVDAV 68 (233)
T ss_dssp ETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT--------------HHHHHHHHT--TCSEE
T ss_pred ECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccC-------------CHHHHHHHHc--CCceE
Confidence 36667777889999999999999999874222222223456666544322 2345666666 78877
Q ss_pred EecCch---hH--HHHHHHHHHHhcCCcEEE
Q psy8013 90 HGHSAF---SA--LAHETMMIARLLGLKTVF 115 (252)
Q Consensus 90 h~~~~~---~~--~~~~~~~~~~~~~~p~v~ 115 (252)
.+.... .. ......-+++..|++.++
T Consensus 69 ~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 69 FSVTPPSHPSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp EEESSCSCCCHHHHHHHHHHHHHHHT-SEEE
T ss_pred EeecCcchhhhhhhhhhHHHhhhccccceEE
Confidence 766551 11 222245567778898765
No 155
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=79.80 E-value=25 Score=26.87 Aligned_cols=163 Identities=28% Similarity=0.320 Sum_probs=81.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHC--CcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccc-cchHHHHHHHhh
Q psy8013 7 YPNVGGVEEHIFNLSQCLLQR--GHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMV-CSIPLVRHILLR 83 (252)
Q Consensus 7 ~P~~GG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 83 (252)
+|..||.+.....+...+... ++++..+...... ................ ..... ............
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 80 (381)
T COG0438 11 PPRVGGIERYVLELAKALRLLGRGHEVLVIAPEKLE-------GLGIEVLRLPSVSLPL---LIVRLRPALLRLLLLLKR 80 (381)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCEEEEEecCccccc-------ccCcceeeccCccccc---cccccCccchHHHHHhcc
Confidence 566799999999998888775 4555555531110 0111111111110000 00000 011111122222
Q ss_pred CC-CcEEEecCchhHHH-HHHHHHHHhcCCcEEEEecCCCCCC-----chh-hHHHHHH---HHHhhc-CCCEEEEechh
Q psy8013 84 EE-ISIVHGHSAFSALA-HETMMIARLLGLKTVFTDHSLFGFA-----DSS-AIVTNKC---LEISLA-GCNHCICVSHI 151 (252)
Q Consensus 84 ~~-~Dvvh~~~~~~~~~-~~~~~~~~~~~~p~v~~~h~~~~~~-----~~~-~~~~~~~---~~~~~~-~~d~vi~~S~~ 151 (252)
.. +|++|.+....... ..........+.+.+...|+..... ... ....... ...... ..+.+++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (381)
T COG0438 81 LLPYDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVIAVSPA 160 (381)
T ss_pred ccccceeeccccccccchhHHHhhccccCCcEEEeecCCcccccccccchhhHHHHHHHHHHHHHhccccccEEEECCHH
Confidence 23 59999887544322 1234445556778888888874311 110 0111111 111222 37888999887
Q ss_pred hhhhHHHhhccCCCceEEccCCccCCCCCC
Q psy8013 152 GKENTVLRARVNHYNVSVIPNAVDTTVFVP 181 (252)
Q Consensus 152 ~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~ 181 (252)
....+ ..... ..++.++|||++.+.+.+
T Consensus 161 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 188 (381)
T COG0438 161 LKELL-EALGV-PNKIVVIPNGIDTEKFAP 188 (381)
T ss_pred HHHHH-HHhCC-CCCceEecCCcCHHHcCc
Confidence 65433 33332 347899999999987764
No 156
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=79.69 E-value=14 Score=24.10 Aligned_cols=82 Identities=15% Similarity=0.013 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEeccCCCCcc------------ee-------eeeCCe-EEEEeecccccCCCccccccc
Q psy8013 13 VEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG------------IR-------YMTNGL-KVYYCPIKTFYNQSILPTMVC 72 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~------------~~-------~~~~~~-~v~~~~~~~~~~~~~~~~~~~ 72 (252)
..-.+--+...+.+.|++|++++...+.... .+ ...-|+ +++.+...-... . ....-.
T Consensus 10 e~l~~gg~i~~~~~~g~~v~vv~~t~G~~~~~~~~~~~~~~~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~-~-~~~~~~ 87 (128)
T PF02585_consen 10 EELGCGGTIAKLAEAGHRVVVVTLTDGEAGHPDPTPWARELGEIRRAEARAAAEILGVENVIFLDFPDGQL-P-GWSWEE 87 (128)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEECE--TTTSSSSHHHHHSCHHHHHHHHHHHHHHCT-EEEEEEEECTTSC-T-CHHHHH
T ss_pred hHHhhHHHHHHHHhcCCeEEEEEecccccCCcccchhhHhHHHHHHHHHHHHHHHcCCceEEEeecCCCCc-c-cccHHH
Confidence 3334445666788889999999876432110 00 012355 444444221110 0 001223
Q ss_pred chHHHHHHHhhCCCcEEEecCchh
Q psy8013 73 SIPLVRHILLREEISIVHGHSAFS 96 (252)
Q Consensus 73 ~~~~l~~~~~~~~~Dvvh~~~~~~ 96 (252)
....+.+++++.+||+|.++.+..
T Consensus 88 ~~~~l~~~i~~~~p~~V~t~~~~~ 111 (128)
T PF02585_consen 88 LVRDLEDLIREFRPDVVFTPDPDD 111 (128)
T ss_dssp HHHHHHHHHHHH-ESEEEEE-STT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCC
Confidence 345678888889999999987544
No 157
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=79.65 E-value=13 Score=23.73 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhh-CCCcEEEecC
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLR-EEISIVHGHS 93 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~Dvvh~~~ 93 (252)
..+..+++.|.+.|+++. ++.. ........|+.+..+...... ....+...++. .++|+|....
T Consensus 12 ~~~~~~a~~l~~~G~~i~--AT~g---Ta~~L~~~Gi~~~~v~~~~~~----------g~~~i~~~i~~~g~idlVIn~~ 76 (112)
T cd00532 12 AMLVDLAPKLSSDGFPLF--ATGG---TSRVLADAGIPVRAVSKRHED----------GEPTVDAAIAEKGKFDVVINLR 76 (112)
T ss_pred HHHHHHHHHHHHCCCEEE--ECcH---HHHHHHHcCCceEEEEecCCC----------CCcHHHHHHhCCCCEEEEEEcC
Confidence 446789999999998764 4431 111122356666665433210 12357778888 8999876542
Q ss_pred c-hh-----HHHHHHHHHHHhcCCcEEEEec
Q psy8013 94 A-FS-----ALAHETMMIARLLGLKTVFTDH 118 (252)
Q Consensus 94 ~-~~-----~~~~~~~~~~~~~~~p~v~~~h 118 (252)
. .. .-++.....|...++|++.+.-
T Consensus 77 ~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~~~ 107 (112)
T cd00532 77 DPRRDRCTDEDGTALLRLARLYKIPVTTPNA 107 (112)
T ss_pred CCCcccccCCChHHHHHHHHHcCCCEEECHH
Confidence 1 11 1133466778888999887643
No 158
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=79.49 E-value=24 Score=26.46 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=59.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||..- ...|++.|...+..+.+.+...-+........ . .+. .-+.....+..++++++.|++
T Consensus 8 lGGT~D-ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~--~--~~~------------~G~l~~e~l~~~l~e~~i~ll 70 (257)
T COG2099 8 LGGTSD-ARALAKKLAAAPVDIILSSLTGYGAKLAEQIG--P--VRV------------GGFLGAEGLAAFLREEGIDLL 70 (257)
T ss_pred EeccHH-HHHHHHHhhccCccEEEEEcccccccchhccC--C--eee------------cCcCCHHHHHHHHHHcCCCEE
Confidence 466654 68899999999877777766532222111100 0 000 111234578999999999987
Q ss_pred Eec-CchhH-HHHHHHHHHHhcCCcEEEEecCCCC
Q psy8013 90 HGH-SAFSA-LAHETMMIARLLGLKTVFTDHSLFG 122 (252)
Q Consensus 90 h~~-~~~~~-~~~~~~~~~~~~~~p~v~~~h~~~~ 122 (252)
.=- .++.. .+.-+..+|+..|+|++-..+-.|.
T Consensus 71 IDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~ 105 (257)
T COG2099 71 IDATHPYAARISQNAARAAKETGIPYLRLERPPWA 105 (257)
T ss_pred EECCChHHHHHHHHHHHHHHHhCCcEEEEECCccc
Confidence 533 33322 3445778899999999887776553
No 159
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=78.47 E-value=15 Score=23.55 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
|.+-...+.++.+.+.|+++.++....+.........+ +.+.++.... ...+.....+.+++++...|.+|-
T Consensus 9 nrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad--~~~~~~~~~~------~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 9 NRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMAD--EAYFEPPGPS------PESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp S-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSS--EEEEEESSSG------GGTTTSHHHHHHHHHHTTESEEES
T ss_pred CCCHHHHHHHHHHHHhCCcceeccCchhcccccccccc--cceecCcchh------hhhhccHHHHhhHhhhhcCccccc
Confidence 33445788999999999998888776443222111111 3444442111 122345667888888899999987
Q ss_pred cCchhHHHHHHHHHHHhcCCcE
Q psy8013 92 HSAFSALAHETMMIARLLGLKT 113 (252)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~p~ 113 (252)
-..+..........+...|+.+
T Consensus 81 Gyg~lse~~~fa~~~~~~gi~f 102 (110)
T PF00289_consen 81 GYGFLSENAEFAEACEDAGIIF 102 (110)
T ss_dssp TSSTTTTHHHHHHHHHHTT-EE
T ss_pred ccchhHHHHHHHHHHHHCCCEE
Confidence 7655444322222233456544
No 160
>PLN02764 glycosyltransferase family protein
Probab=78.46 E-value=31 Score=28.61 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceee--eeCCeEEEEeecc--cc-cCC-Cc---cc-----ccccc----
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRY--MTNGLKVYYCPIK--TF-YNQ-SI---LP-----TMVCS---- 73 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~--~~~~~~v~~~~~~--~~-~~~-~~---~~-----~~~~~---- 73 (252)
|=-.-..+|++.|+.+|+.|+++++...-...... ...++.+..++.+ .. ... .. .+ .+...
T Consensus 17 GHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~~~~~~~~a~~~~ 96 (453)
T PLN02764 17 GHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPVTSADLLMSAMDLT 96 (453)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCChhHHHHHHHHHHHh
Confidence 44456789999999999999999986431111100 0112334333332 10 000 00 01 01111
Q ss_pred hHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 74 IPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 74 ~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
...+.++++..++|.|.+.. . .+ +.-+++.+|+|.+.
T Consensus 97 ~~~~~~~l~~~~~~~iV~D~-~-~w---~~~vA~~~gIP~~~ 133 (453)
T PLN02764 97 RDQVEVVVRAVEPDLIFFDF-A-HW---IPEVARDFGLKTVK 133 (453)
T ss_pred HHHHHHHHHhCCCCEEEECC-c-hh---HHHHHHHhCCCEEE
Confidence 12345566666788887773 2 22 66677788888654
No 161
>PLN02562 UDP-glycosyltransferase
Probab=78.36 E-value=24 Score=29.19 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCccee--eeeCCeEEEEeec
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIR--YMTNGLKVYYCPI 58 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~~~v~~~~~ 58 (252)
|=-.-+.+|++.|+.+|+.|+++++......... ....++++..+|.
T Consensus 18 GHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~ 66 (448)
T PLN02562 18 GHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISD 66 (448)
T ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCC
Confidence 3344578999999999999999997642211000 0113577777764
No 162
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=78.34 E-value=4.7 Score=23.99 Aligned_cols=46 Identities=15% Similarity=0.008 Sum_probs=36.9
Q ss_pred HhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCccCCCCCCCccc
Q psy8013 137 ISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDVSR 185 (252)
Q Consensus 137 ~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd~~~f~~~~~~ 185 (252)
.+....|.|.+..+...+.+ +..| .+++..+|-++|+..|.|....
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~-~~~G--~~~V~yLPLAa~~~~~~p~~~~ 59 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEY-RNLG--AENVFYLPLAANPERFRPIPVD 59 (79)
T ss_pred hhCCCCCEEEEECHHHHHHH-HHcC--CCCEEEccccCCHHHhCcccCC
Confidence 44567999999999888876 4445 4899999999999999987653
No 163
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=78.00 E-value=18 Score=25.49 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHHHCCcE--EEEEeccCCCCcc-eeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcE
Q psy8013 12 GVEEHIFNLSQCLLQRGHK--VIVLTHSYKDRVG-IRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISI 88 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~--V~v~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dv 88 (252)
|.......+...+.+.+++ +..+....+.... ......++....+...... ..-..-..+...++..+||+
T Consensus 9 g~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~Dl 82 (181)
T PF00551_consen 9 GSGSFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVADEKNFQ------PRSENDEELLELLESLNPDL 82 (181)
T ss_dssp SSSHHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEHHGGGSS------SHHHHHHHHHHHHHHTT-SE
T ss_pred CCCHHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEeccccCCC------chHhhhhHHHHHHHhhccce
Confidence 3336677888899988887 4444433232221 1112233333222222110 00012235677888999999
Q ss_pred EEecCchhHH
Q psy8013 89 VHGHSAFSAL 98 (252)
Q Consensus 89 vh~~~~~~~~ 98 (252)
+.+.++...+
T Consensus 83 ~v~~~~~~il 92 (181)
T PF00551_consen 83 IVVAGYGRIL 92 (181)
T ss_dssp EEESS-SS--
T ss_pred eehhhhHHHh
Confidence 9888765433
No 164
>PRK06849 hypothetical protein; Provisional
Probab=77.80 E-value=4 Score=32.82 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||.....+.+++.|.+.|++|.++............... ..+.+|.+.. ..-.....+.++++++++|+|
T Consensus 10 ~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d--~~~~~p~p~~-------d~~~~~~~L~~i~~~~~id~v 80 (389)
T PRK06849 10 TGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVD--GFYTIPSPRW-------DPDAYIQALLSIVQRENIDLL 80 (389)
T ss_pred eCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhh--heEEeCCCCC-------CHHHHHHHHHHHHHHcCCCEE
Confidence 3555557899999999999999988765221111000011 1223332211 011234567788888899988
Q ss_pred EecCc
Q psy8013 90 HGHSA 94 (252)
Q Consensus 90 h~~~~ 94 (252)
+....
T Consensus 81 IP~~e 85 (389)
T PRK06849 81 IPTCE 85 (389)
T ss_pred EECCh
Confidence 77653
No 165
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=77.74 E-value=9.6 Score=28.67 Aligned_cols=102 Identities=15% Similarity=0.065 Sum_probs=58.3
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccCCCCc------ce------eeeeCCeEEEEeecccccCCCcccccccchHHHH
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRV------GI------RYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVR 78 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~------~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~ 78 (252)
-|-.+.+..|++.|.+.|+.|-|++-++..+. .+ ....+++-+...+.... +..+........
T Consensus 40 aGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~-----lGGls~~t~~~v 114 (266)
T PF03308_consen 40 AGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGS-----LGGLSRATRDAV 114 (266)
T ss_dssp SSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SS-----HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCC-----CCCccHhHHHHH
Confidence 57788999999999999999999997543211 11 11345666655554321 222333445667
Q ss_pred HHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecC
Q psy8013 79 HILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHS 119 (252)
Q Consensus 79 ~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 119 (252)
.+++...+|+|.+.+...+-. -.-++...++-+++..-+
T Consensus 115 ~ll~aaG~D~IiiETVGvGQs--E~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 115 RLLDAAGFDVIIIETVGVGQS--EVDIADMADTVVLVLVPG 153 (266)
T ss_dssp HHHHHTT-SEEEEEEESSSTH--HHHHHTTSSEEEEEEESS
T ss_pred HHHHHcCCCEEEEeCCCCCcc--HHHHHHhcCeEEEEecCC
Confidence 788889999999987543333 233455556555555444
No 166
>PRK04148 hypothetical protein; Provisional
Probab=77.24 E-value=9.3 Score=25.50 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecCch
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAF 95 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~ 95 (252)
+-..++..|++.|++|+.+=.+.. ........++.+..-..... -..+ -...|+|.+-.+.
T Consensus 27 fG~~vA~~L~~~G~~ViaIDi~~~--aV~~a~~~~~~~v~dDlf~p------------~~~~-----y~~a~liysirpp 87 (134)
T PRK04148 27 FYFKVAKKLKESGFDVIVIDINEK--AVEKAKKLGLNAFVDDLFNP------------NLEI-----YKNAKLIYSIRPP 87 (134)
T ss_pred CCHHHHHHHHHCCCEEEEEECCHH--HHHHHHHhCCeEEECcCCCC------------CHHH-----HhcCCEEEEeCCC
Confidence 335678888899998876654321 11111112233322221110 0111 1378999988876
Q ss_pred hHHHHHHHHHHHhcCCcEEEEecC
Q psy8013 96 SALAHETMMIARLLGLKTVFTDHS 119 (252)
Q Consensus 96 ~~~~~~~~~~~~~~~~p~v~~~h~ 119 (252)
+-+......+++..+++++++.-+
T Consensus 88 ~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 88 RDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 655555677788889987765443
No 167
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=77.20 E-value=1 Score=37.55 Aligned_cols=28 Identities=36% Similarity=0.278 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
++=-..+..++++|+++||+||++++..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 4445678899999999999999999853
No 168
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=77.06 E-value=15 Score=27.32 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=15.5
Q ss_pred HHHHHHHCCcEEEEEeccCC
Q psy8013 20 LSQCLLQRGHKVIVLTHSYK 39 (252)
Q Consensus 20 l~~~L~~~G~~V~v~~~~~~ 39 (252)
.+..+.++|++|.++|.+.+
T Consensus 30 tla~~~~~G~~V~v~~lT~G 49 (237)
T COG2120 30 TLAKLAARGVEVTVVCLTLG 49 (237)
T ss_pred HHHHHHHCCCeEEEEEccCC
Confidence 44556789999999998654
No 169
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=76.95 E-value=28 Score=25.94 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=34.5
Q ss_pred HHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 76 LVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 76 ~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
-+...++...|+|+.+.....-....+..-+...|+++|.|.|+.
T Consensus 209 gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaHG~ 253 (308)
T COG3854 209 GMMMAIRSMSPEVIIVDEIGTEEDALAILTALHAGVKLITTAHGN 253 (308)
T ss_pred HHHHHHHhcCCcEEEEeccccHHHHHHHHHHHhcCcEEEEeeccc
Confidence 455667888999999987654444346666777899999999995
No 170
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=76.83 E-value=23 Score=24.91 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=16.6
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEe
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLT 35 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~ 35 (252)
.||.. .+.+..|++.|.++.+++
T Consensus 35 ~GG~~---~n~a~~l~~LG~~~~~~~ 57 (196)
T cd00287 35 AGGGA---ANVAVALARLGVSVTLVG 57 (196)
T ss_pred CCCcH---HHHHHHHHHCCCcEEEEE
Confidence 45553 567777888888888877
No 171
>PRK12342 hypothetical protein; Provisional
Probab=75.97 E-value=31 Score=25.99 Aligned_cols=107 Identities=8% Similarity=0.080 Sum_probs=63.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce---e-eeeCCe-EEEEeecccccCCCcccccccchHHHHHHHhhC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI---R-YMTNGL-KVYYCPIKTFYNQSILPTMVCSIPLVRHILLRE 84 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---~-~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (252)
.+-...+..+.+-.|.+.|.+|++++......... . ...-|. +.+.+....... ...+.....|...+++.
T Consensus 33 iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g----~D~~ata~~La~~i~~~ 108 (254)
T PRK12342 33 ISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEH----ALPLDTAKALAAAIEKI 108 (254)
T ss_pred CChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCC----CCHHHHHHHHHHHHHHh
Confidence 45567788999999997789999999975431111 1 111221 223332211111 12234456778888888
Q ss_pred CCcEEEecCch--hHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 85 EISIVHGHSAF--SALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 85 ~~Dvvh~~~~~--~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
.||+|.+-... ...+..+..++..+|.|.+......
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~~ 146 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSKI 146 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEEE
Confidence 89999876421 1112236678888999988766553
No 172
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=75.84 E-value=22 Score=27.11 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=44.9
Q ss_pred HHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcC--CCEEEEechh
Q psy8013 76 LVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAG--CNHCICVSHI 151 (252)
Q Consensus 76 ~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~--~d~vi~~S~~ 151 (252)
.+..++...+||++.+-.+...-......-....|..++.+.|+. .......+..++.++.. ++++++.|+.
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~----~~~~~~~r~~~~~l~~~~~~~r~i~L~~~ 258 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGR----DVEDLYKRPVFKELIENEAFERYVVLSRR 258 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechh----HHHHHHhChHHHHHHhcCceEEEEEEecC
Confidence 455667778999999998654332222333334688899999973 22222333445555554 8899999863
No 173
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=75.75 E-value=19 Score=30.07 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
|=-.=+.+|++.|+.+|+.||++++..
T Consensus 21 GHi~P~l~LAk~La~~G~~VTfv~T~~ 47 (477)
T PLN02863 21 GHMIPLLDLTHRLALRGLTITVLVTPK 47 (477)
T ss_pred chHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 333457899999999999999999864
No 174
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=75.29 E-value=7.9 Score=28.70 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=24.2
Q ss_pred CcEEEecCchhHHHHHHHHHHHhcCCcEEEEecC
Q psy8013 86 ISIVHGHSAFSALAHETMMIARLLGLKTVFTDHS 119 (252)
Q Consensus 86 ~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 119 (252)
||++.+-.+..--. +..=|+..|+|+|..+-.
T Consensus 157 Pd~l~ViDp~~e~i--Av~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKI--AVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHH--HHHHHHHcCCCEEEEecC
Confidence 99999998764332 666788899999876554
No 175
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.65 E-value=18 Score=28.07 Aligned_cols=100 Identities=15% Similarity=0.068 Sum_probs=51.6
Q ss_pred CCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccc-cccchHHHHHHHhhCCC
Q psy8013 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPT-MVCSIPLVRHILLREEI 86 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 86 (252)
|...|-.+-+..|...+.+. +..+++|-..+ .+ +..-+.....+..-... ...+...|+..+ +.+|
T Consensus 133 pTGSGKSTTlAamId~iN~~-~~~HIlTIEDP--IE---------~vh~skkslI~QREvG~dT~sF~~aLraAL-ReDP 199 (353)
T COG2805 133 PTGSGKSTTLAAMIDYINKH-KAKHILTIEDP--IE---------YVHESKKSLINQREVGRDTLSFANALRAAL-REDP 199 (353)
T ss_pred CCCCcHHHHHHHHHHHHhcc-CCcceEEecCc--hH---------hhhcchHhhhhHHHhcccHHHHHHHHHHHh-hcCC
Confidence 44556666667777777654 55667776522 11 11101111111111111 122333444444 4699
Q ss_pred cEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 87 SIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 87 Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
|||.+-.....-.....+-+...|-=+.-|+|..
T Consensus 200 DVIlvGEmRD~ETi~~ALtAAETGHLV~~TLHT~ 233 (353)
T COG2805 200 DVILVGEMRDLETIRLALTAAETGHLVFGTLHTN 233 (353)
T ss_pred CEEEEeccccHHHHHHHHHHHhcCCEEEEecccc
Confidence 9998876544333224455666787778899986
No 176
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=74.58 E-value=4.2 Score=30.75 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYK 39 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 39 (252)
.||.+..-..|+..|.+.||+|++++.+..
T Consensus 4 TGgTGlIG~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 4 TGGTGLIGRALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred eccccchhHHHHHHHHhCCCeEEEEEcCCc
Confidence 488888889999999999999999998643
No 177
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=74.49 E-value=29 Score=28.53 Aligned_cols=77 Identities=8% Similarity=0.085 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEec
Q psy8013 13 VEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGH 92 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~ 92 (252)
-...+..+++.|.+.|.+|..+......+.. .....+ . ........+.+.+++.++|++..+
T Consensus 319 ~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~-~~~~~~--------------~---~~~~D~~~l~~~i~~~~~dliig~ 380 (432)
T TIGR01285 319 EPDLLAAWATFFTSMGAQIVAAVTTTGSPLL-QKLPVE--------------T---VVIGDLEDLEDLACAAGADLLITN 380 (432)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHH-HhCCcC--------------c---EEeCCHHHHHHHHhhcCCCEEEEC
Confidence 3357789999999999999877765332211 000000 0 011223467788888999999988
Q ss_pred CchhHHHHHHHHHHHhcCCcEE
Q psy8013 93 SAFSALAHETMMIARLLGLKTV 114 (252)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~p~v 114 (252)
..- ..+++..++|++
T Consensus 381 s~~-------k~~A~~l~ip~i 395 (432)
T TIGR01285 381 SHG-------RALAQRLALPLV 395 (432)
T ss_pred cch-------HHHHHHcCCCEE
Confidence 743 335677899986
No 178
>PLN03015 UDP-glucosyl transferase
Probab=74.21 E-value=49 Score=27.65 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHHHHHC-CcEEEEEeccCCCCcc-----eeee-e-CCeEEEEeecccccC--C---Cccccccc----ch
Q psy8013 12 GVEEHIFNLSQCLLQR-GHKVIVLTHSYKDRVG-----IRYM-T-NGLKVYYCPIKTFYN--Q---SILPTMVC----SI 74 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~-----~~~~-~-~~~~v~~~~~~~~~~--~---~~~~~~~~----~~ 74 (252)
|=-.-+.+|++.|+.+ |..|++++........ .... . .++++..+|...... . .....+.. ..
T Consensus 15 GHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (470)
T PLN03015 15 GHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATIFTKMVVKMRAMK 94 (470)
T ss_pred ccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccHHHHHHHHHHhch
Confidence 4445578999999977 9999999765322110 0000 1 247777777432211 0 00001111 12
Q ss_pred HHHHHHHhhC--CCcEEEecCchhHHHHHHHHHHHhcCCcE
Q psy8013 75 PLVRHILLRE--EISIVHGHSAFSALAHETMMIARLLGLKT 113 (252)
Q Consensus 75 ~~l~~~~~~~--~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~ 113 (252)
..+.+++++. +++.|.+....+ + +.-+++.+|+|.
T Consensus 95 ~~~~~~l~~l~~~~~ciV~D~f~~-w---~~~vA~~lgIP~ 131 (470)
T PLN03015 95 PAVRDAVKSMKRKPTVMIVDFFGT-A---LMSIADDVGVTA 131 (470)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCcH-H---HHHHHHHcCCCE
Confidence 2355566543 566665555432 2 556777889983
No 179
>PLN02534 UDP-glycosyltransferase
Probab=74.19 E-value=22 Score=29.77 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
|=-.-+.+|++.|+.+|+.||++++..
T Consensus 20 GHi~P~l~LAk~La~~G~~vT~v~t~~ 46 (491)
T PLN02534 20 GHMIPMIDMARLLAERGVIVSLVTTPQ 46 (491)
T ss_pred chHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 444567899999999999999999864
No 180
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=74.12 E-value=29 Score=26.22 Aligned_cols=106 Identities=8% Similarity=0.050 Sum_probs=62.4
Q ss_pred CCcHHHHHHHHHHHHHHC-C-cEEEEEeccCCCCcc----eeeeeCCe-EEEEeecccccCCCcccccccchHHHHHHHh
Q psy8013 10 VGGVEEHIFNLSQCLLQR-G-HKVIVLTHSYKDRVG----IRYMTNGL-KVYYCPIKTFYNQSILPTMVCSIPLVRHILL 82 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~-G-~~V~v~~~~~~~~~~----~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (252)
.+-.-.+..+.|-.|.++ | .+|++++........ ......|. +.+.+....... ...+.....|...++
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g----~D~~~tA~~La~ai~ 109 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQ----ALPQQTASALAAAAQ 109 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccC----cCHHHHHHHHHHHHH
Confidence 444567889999999987 3 699999997543111 11112221 223332221111 122345567888888
Q ss_pred hCCCcEEEecCch--hHHHHHHHHHHHhcCCcEEEEecC
Q psy8013 83 REEISIVHGHSAF--SALAHETMMIARLLGLKTVFTDHS 119 (252)
Q Consensus 83 ~~~~Dvvh~~~~~--~~~~~~~~~~~~~~~~p~v~~~h~ 119 (252)
+..||+|.+-... ...+..+..++..+|+|.+...-.
T Consensus 110 ~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 110 KAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 8889999886421 112223677888899998765544
No 181
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=74.09 E-value=43 Score=26.64 Aligned_cols=140 Identities=12% Similarity=0.063 Sum_probs=71.5
Q ss_pred CCcHHHHHHHHHHHHHHCC--cEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCc
Q psy8013 10 VGGVEEHIFNLSQCLLQRG--HKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEIS 87 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~D 87 (252)
..|+...+.-|+.-|.+.. ++|.++.....+..... ....... .....+...+. +.|
T Consensus 17 ~NGi~QN~~fL~~lL~qs~~v~~V~Lvn~g~~~~~~~~--------------~~~~~~~-----~~~~~~~~~~~--~lD 75 (364)
T PF10933_consen 17 ENGINQNCIFLAMLLQQSPRVESVVLVNGGDGNPIPAA--------------LMLDLLD-----VPLVDFDDAID--ELD 75 (364)
T ss_pred hhchhhHHHHHHHHHhhCCCcceEEEEECCCCCcCCcc--------------cccccCC-----CceecHHHhcc--cCC
Confidence 4788999999999998775 78999987533222110 0000000 01122333333 889
Q ss_pred EEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhc--CCCEEEEechhhhhhHHHhhccCCC
Q psy8013 88 IVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLA--GCNHCICVSHIGKENTVLRARVNHY 165 (252)
Q Consensus 88 vvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~--~~d~vi~~S~~~~~~~~~~~~~~~~ 165 (252)
|++-.+...... -....+..|.++|....|..-.....+.+..+-...++. ..|.|.++-+..........-+...
T Consensus 76 VlIEmg~ql~~~--~~~~~~~~G~KvV~y~~GndYv~~~E~~lF~k~~~~~f~~~~yD~VW~lPq~~~~~~~yl~~l~r~ 153 (364)
T PF10933_consen 76 VLIEMGAQLDPE--WLDYMRARGGKVVSYRCGNDYVMDIESMLFNKPSGHLFNGAPYDEVWTLPQFENTCAPYLETLHRC 153 (364)
T ss_pred EEEEccCccCHH--HHHHHHHcCCeEEEEeCCchHHHHhhHHhcCCCCCccCCCCCCceeEeccchhhhchHHHHHHhcC
Confidence 998887554332 334456679999988887521111111111110111222 3777777766554421111112234
Q ss_pred ceEEccC
Q psy8013 166 NVSVIPN 172 (252)
Q Consensus 166 ~i~vI~n 172 (252)
+++++|.
T Consensus 154 Pv~~vP~ 160 (364)
T PF10933_consen 154 PVRVVPH 160 (364)
T ss_pred CceeeCc
Confidence 5666665
No 182
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=73.78 E-value=50 Score=30.93 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecCch
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAF 95 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~ 95 (252)
.+.+.+++|.+.|+++.++....+.........+ +.+.-| .....+.+++++++||.|+.....
T Consensus 577 ~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD--~~y~ep--------------~~~e~vl~I~~~e~~dgVI~~~g~ 640 (1068)
T PRK12815 577 SSVHAAFALKKEGYETIMINNNPETVSTDYDTAD--RLYFEP--------------LTLEDVLNVAEAENIKGVIVQFGG 640 (1068)
T ss_pred hHHHHHHHHHHcCCEEEEEeCCccccccccccCc--eEEEcc--------------CCHHHHHHHHhhcCCCEEEEecCc
Confidence 5677899999999999888876432211111111 111111 123457788889999998875322
Q ss_pred hHHHHHHHHHHHhcCCcEEE
Q psy8013 96 SALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 96 ~~~~~~~~~~~~~~~~p~v~ 115 (252)
..... ........|+|++.
T Consensus 641 ~~~~~-la~~le~~Gi~ilG 659 (1068)
T PRK12815 641 QTAIN-LAKGLEEAGLTILG 659 (1068)
T ss_pred HHHHH-HHHHHHHCCCeEEC
Confidence 21111 22233446777654
No 183
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=73.65 E-value=59 Score=30.40 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=44.3
Q ss_pred HHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecCchh
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFS 96 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~~ 96 (252)
...++++|.+.|++|.++....+.........+ +.+.-| .....+..++++.++|.|+......
T Consensus 577 ~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D--~ly~ep--------------~~~e~vl~i~~~e~idgVI~~~gg~ 640 (1050)
T TIGR01369 577 CVHAVLALRELGYETIMINYNPETVSTDYDTSD--RLYFEP--------------LTFEDVMNIIELEKPEGVIVQFGGQ 640 (1050)
T ss_pred HHHHHHHHHhCCCEEEEEecCCccccccccccc--eEEEec--------------CCHHHHHHHHhhcCCCEEEEccCcH
Confidence 678899999999998888765332111110111 011000 1234567778889999887654322
Q ss_pred -HHHHHHHHHHHhcCCcEEE
Q psy8013 97 -ALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 97 -~~~~~~~~~~~~~~~p~v~ 115 (252)
... ........|+|++.
T Consensus 641 ~~~~--la~~le~~Gi~i~G 658 (1050)
T TIGR01369 641 TPLN--LAKALEEAGVPILG 658 (1050)
T ss_pred hHHH--HHHHHHHCCCcEEC
Confidence 111 22233345777654
No 184
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.18 E-value=6.5 Score=23.21 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 13 VEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.+....++|..|.+.|.+|+++...
T Consensus 7 gG~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 7 GGFIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp SSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cCHHHHHHHHHHHHhCcEEEEEecc
Confidence 3445789999999999999999986
No 185
>PRK09620 hypothetical protein; Provisional
Probab=72.55 E-value=23 Score=26.15 Aligned_cols=23 Identities=22% Similarity=0.184 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
..-..++++|.++|++|+++...
T Consensus 30 fiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 30 TIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC
Confidence 44577999999999999999754
No 186
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=72.27 E-value=12 Score=32.47 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCcEEEEEeccCC
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYK 39 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~ 39 (252)
+--....|.++||+|+|++.+.+
T Consensus 386 ~GGTlarl~~~G~~V~vv~~TsG 408 (652)
T PRK02122 386 MGGTFRRLVEQGHDVHVAYQTSG 408 (652)
T ss_pred hHHHHHHHHHCCCcEEEEEecCC
Confidence 33455778889999999876543
No 187
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=72.15 E-value=56 Score=27.13 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeec
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPI 58 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~ 58 (252)
|=-.-..+|++.|+.+|+.||++++...-... .....++++..+|.
T Consensus 19 GHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~-~~~~~~i~~~~ip~ 64 (451)
T PLN02410 19 GHISPMMQLAKTLHLKGFSITIAQTKFNYFSP-SDDFTDFQFVTIPE 64 (451)
T ss_pred ccHHHHHHHHHHHHcCCCEEEEEeCccccccc-ccCCCCeEEEeCCC
Confidence 33445789999999999999999886432111 11113566666654
No 188
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=71.86 E-value=32 Score=28.69 Aligned_cols=70 Identities=6% Similarity=0.021 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEec
Q psy8013 14 EEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGH 92 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~ 92 (252)
+.....+++.+.+.|+++.++....+.........+ +.+.++.... ..+.....+..+.++.++|.||.-
T Consensus 11 geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD--~~~~i~~~~~-------~~y~d~~~i~~~a~~~~~D~I~pg 80 (472)
T PRK07178 11 GEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRAD--EAYSIGADPL-------AGYLNPRRLVNLAVETGCDALHPG 80 (472)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCC--EEEEcCCCch-------hhhcCHHHHHHHHHHHCCCEEEeC
Confidence 345678999999999999888876432221110011 2223322111 111223467778888999999964
No 189
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=71.35 E-value=13 Score=28.20 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=22.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
.||.+..-..+++.|.+.||+|+++..
T Consensus 5 ~G~tG~iG~~l~~~l~~~g~~v~~~~r 31 (287)
T TIGR01214 5 TGANGQLGRELVQQLSPEGRVVVALTS 31 (287)
T ss_pred EcCCCHHHHHHHHHHHhcCCEEEEeCC
Confidence 366777778899999999999988765
No 190
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=71.28 E-value=35 Score=24.41 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHHHHCCc--EEEEEeccCCCCc-ceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCc
Q psy8013 11 GGVEEHIFNLSQCLLQRGH--KVIVLTHSYKDRV-GIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEIS 87 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~D 87 (252)
.|.+.....+.+.+.+.+. +|.++.+..++.. .......|+.++.++.....+. -..-..+.+.++..++|
T Consensus 8 sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~------~~~~~~~~~~l~~~~~D 81 (190)
T TIGR00639 8 SGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSR------EAFDQAIIEELRAHEVD 81 (190)
T ss_pred cCCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCch------hhhhHHHHHHHHhcCCC
Confidence 4666778889999887655 6665545432211 1122445676665433221110 01123567778889999
Q ss_pred EEEecCchhHH
Q psy8013 88 IVHGHSAFSAL 98 (252)
Q Consensus 88 vvh~~~~~~~~ 98 (252)
++.+..+...+
T Consensus 82 ~iv~~~~~~il 92 (190)
T TIGR00639 82 LVVLAGFMRIL 92 (190)
T ss_pred EEEEeCcchhC
Confidence 99888765433
No 191
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=71.16 E-value=42 Score=25.25 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||..- ...+++.|.+.|++|.+-+....+. . ...++.++.=+ +.....+..+++++++++|
T Consensus 8 lgGT~e-gr~la~~L~~~g~~v~~Svat~~g~-~---~~~~~~v~~G~-------------l~~~~~l~~~l~~~~i~~V 69 (248)
T PRK08057 8 LGGTSE-ARALARALAAAGVDIVLSLAGRTGG-P---ADLPGPVRVGG-------------FGGAEGLAAYLREEGIDLV 69 (248)
T ss_pred EechHH-HHHHHHHHHhCCCeEEEEEccCCCC-c---ccCCceEEECC-------------CCCHHHHHHHHHHCCCCEE
Confidence 355543 6789999999999888766653222 1 11222222111 1134568889999999976
Q ss_pred E-ecCchhH-HHHHHHHHHHhcCCcEEEEecCCC
Q psy8013 90 H-GHSAFSA-LAHETMMIARLLGLKTVFTDHSLF 121 (252)
Q Consensus 90 h-~~~~~~~-~~~~~~~~~~~~~~p~v~~~h~~~ 121 (252)
. +..++.. ....+..+|+..++|++-..+..|
T Consensus 70 IDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~ 103 (248)
T PRK08057 70 IDATHPYAAQISANAAAACRALGIPYLRLERPSW 103 (248)
T ss_pred EECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCc
Confidence 4 4444432 344466788999999988777654
No 192
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=70.94 E-value=19 Score=28.98 Aligned_cols=89 Identities=11% Similarity=0.028 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHCC-cEEEEEeccCCCCcceee-eeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 14 EEHIFNLSQCLLQRG-HKVIVLTHSYKDRVGIRY-MTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
+....-.+.-|+++| ++|++.+.+.+....... ...+++...+. ......+.++|+.. |+|..
T Consensus 10 G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD-------------~~d~~al~~li~~~--d~VIn 74 (389)
T COG1748 10 GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD-------------AADVDALVALIKDF--DLVIN 74 (389)
T ss_pred chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec-------------ccChHHHHHHHhcC--CEEEE
Confidence 444555777888888 899999886332211111 11123333322 22334577777754 88876
Q ss_pred cCchhHHHHHHHHHHHhcCCcEEEEec
Q psy8013 92 HSAFSALAHETMMIARLLGLKTVFTDH 118 (252)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~p~v~~~h 118 (252)
..+.. ....+..+|...|++++-+.-
T Consensus 75 ~~p~~-~~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 75 AAPPF-VDLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred eCCch-hhHHHHHHHHHhCCCEEEccc
Confidence 66543 333366788889999876443
No 193
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=70.58 E-value=35 Score=25.17 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||.. ....=++.|.+.|.+|+|+++..............++...-+.. ...+ ..+++|
T Consensus 31 VGGG~-VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~------------------~~dl--~g~~LV 89 (223)
T PRK05562 31 IGGGK-AAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYD------------------KEFI--KDKHLI 89 (223)
T ss_pred ECCCH-HHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCC------------------hHHh--CCCcEE
Confidence 35544 45666788888999999999974322211111122333221110 0011 367888
Q ss_pred EecCchhHHHHHHHHHHHhcCCcEE
Q psy8013 90 HGHSAFSALAHETMMIARLLGLKTV 114 (252)
Q Consensus 90 h~~~~~~~~~~~~~~~~~~~~~p~v 114 (252)
.+.+....+.......++..++++.
T Consensus 90 iaATdD~~vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 90 VIATDDEKLNNKIRKHCDRLYKLYI 114 (223)
T ss_pred EECCCCHHHHHHHHHHHHHcCCeEE
Confidence 8877655555445555666666543
No 194
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=70.52 E-value=9.5 Score=25.47 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=29.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCC
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYK 39 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 39 (252)
|....|-+++++..+++.|.+.|++|.++....-
T Consensus 3 Y~S~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~ 36 (143)
T PF00258_consen 3 YGSMTGNTEKMAEAIAEGLRERGVEVRVVDLDDF 36 (143)
T ss_dssp EETSSSHHHHHHHHHHHHHHHTTSEEEEEEGGGS
T ss_pred EECCchhHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 4456799999999999999999999999988643
No 195
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=70.48 E-value=8.5 Score=27.61 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=23.6
Q ss_pred CCcHHHHH--HHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVEEHI--FNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~~~~--~~l~~~L~~~G~~V~v~~~~~ 38 (252)
.||+..+- .++++.|.+.|++|+++.+..
T Consensus 13 TGsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 13 TGSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred cCHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 46666663 899999999999999988753
No 196
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=70.30 E-value=8.3 Score=28.12 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=44.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||.+..-..+++.|.++|++|+.++........ .....+++++..... ....+.++++..++|.|
T Consensus 4 ~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~-~~~~~~~~~~~~dl~-------------~~~~~~~~~~~~~~d~v 69 (236)
T PF01370_consen 4 TGATGFIGSALVRQLLKKGHEVIVLSRSSNSESF-EEKKLNVEFVIGDLT-------------DKEQLEKLLEKANIDVV 69 (236)
T ss_dssp ETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHH-HHHHTTEEEEESETT-------------SHHHHHHHHHHHTESEE
T ss_pred EccCCHHHHHHHHHHHHcCCcccccccccccccc-ccccceEEEEEeecc-------------ccccccccccccCceEE
Confidence 4788888899999999999998877776332211 111124444443322 23456777777788864
Q ss_pred -EecCc
Q psy8013 90 -HGHSA 94 (252)
Q Consensus 90 -h~~~~ 94 (252)
|+-..
T Consensus 70 i~~a~~ 75 (236)
T PF01370_consen 70 IHLAAF 75 (236)
T ss_dssp EEEBSS
T ss_pred EEeecc
Confidence 55443
No 197
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=70.29 E-value=23 Score=22.22 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecC
Q psy8013 14 EEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS 93 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~ 93 (252)
+.....-++.|.+.|.+|+|+++.. ......++...-.. ... -.+.|+|.+..
T Consensus 16 G~va~~k~~~Ll~~gA~v~vis~~~------~~~~~~i~~~~~~~-------------------~~~--l~~~~lV~~at 68 (103)
T PF13241_consen 16 GPVAARKARLLLEAGAKVTVISPEI------EFSEGLIQLIRREF-------------------EED--LDGADLVFAAT 68 (103)
T ss_dssp SHHHHHHHHHHCCCTBEEEEEESSE------HHHHTSCEEEESS--------------------GGG--CTTESEEEE-S
T ss_pred CHHHHHHHHHHHhCCCEEEEECCch------hhhhhHHHHHhhhH-------------------HHH--HhhheEEEecC
Confidence 4456778899999999999999873 00112222211110 011 23678888888
Q ss_pred chhHHHHHHHHHHHhcCCcEEE
Q psy8013 94 AFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
....+.......++..++|+-.
T Consensus 69 ~d~~~n~~i~~~a~~~~i~vn~ 90 (103)
T PF13241_consen 69 DDPELNEAIYADARARGILVNV 90 (103)
T ss_dssp S-HHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhhCCEEEEE
Confidence 6665655566677778887643
No 198
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=69.97 E-value=5.8 Score=27.30 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|.+......++.|.+.|++|+|+.+.
T Consensus 20 GGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 20 GGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 44556788999999999999999654
No 199
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=69.67 E-value=57 Score=26.26 Aligned_cols=43 Identities=19% Similarity=0.068 Sum_probs=28.8
Q ss_pred HHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 77 VRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 77 l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
++..+ +.+||+|.+-.....-.....+-+...|.+++.|+|..
T Consensus 218 l~~aL-R~~PD~I~vGEiRd~et~~~al~aa~TGH~v~tTlHa~ 260 (372)
T TIGR02525 218 IRLAL-RRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVK 260 (372)
T ss_pred HHHhh-ccCCCEEeeCCCCCHHHHHHHHHHHhcCCcEEEeeCCC
Confidence 44444 45999998887654333223445666788899999985
No 200
>KOG1192|consensus
Probab=68.98 E-value=7.4 Score=32.40 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=25.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
..|=-..+.++++.|+++||+|+++++..
T Consensus 15 ~~sH~~~~~~la~~L~~~gh~vt~~~~~~ 43 (496)
T KOG1192|consen 15 GQSHLNPMLQLAKRLAERGHNVTVVTPSF 43 (496)
T ss_pred cccHHHHHHHHHHHHHHcCCceEEEEeec
Confidence 45667889999999999999999999864
No 201
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=68.77 E-value=18 Score=32.58 Aligned_cols=93 Identities=12% Similarity=0.087 Sum_probs=59.5
Q ss_pred cEEEecCchhHHHHHHHHHH-HhcCCcEEEEecCCCCCCchhhH--HHHHHHHHhhcCCCEEEEechhhhhhHHHhh---
Q psy8013 87 SIVHGHSAFSALAHETMMIA-RLLGLKTVFTDHSLFGFADSSAI--VTNKCLEISLAGCNHCICVSHIGKENTVLRA--- 160 (252)
Q Consensus 87 Dvvh~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~~~~~--~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~--- 160 (252)
|+|-+|.+...+. ..++. +....++-+..|-.|+....... ....+++. +-.||.|=..+...+++++.-.
T Consensus 203 d~VWVhDYhL~ll--P~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r~eiL~g-lL~aDlIGFht~~yar~Fl~~~~r~ 279 (854)
T PLN02205 203 DFVWIHDYHLMVL--PTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRA-LLNSDLIGFHTFDYARHFLSCCSRM 279 (854)
T ss_pred CEEEEeCchhhHH--HHHHHhhCCCCcEEEEecCCCCChHHHhhCCcHHHHHHH-HhcCCeEEecCHHHHHHHHHHHHHH
Confidence 8999999876443 44443 33467888999998876544332 22333443 3459999999998888876421
Q ss_pred -ccC---------------CCceEEccCCccCCCCCCC
Q psy8013 161 -RVN---------------HYNVSVIPNAVDTTVFVPD 182 (252)
Q Consensus 161 -~~~---------------~~~i~vI~ngvd~~~f~~~ 182 (252)
|.. .-++.+.|-|||.+.|...
T Consensus 280 lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~ 317 (854)
T PLN02205 280 LGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSV 317 (854)
T ss_pred hCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHH
Confidence 211 1135678889998877543
No 202
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=68.32 E-value=43 Score=24.34 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHHHHHHCC--cEEEEEeccCCCCc-ceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCc
Q psy8013 11 GGVEEHIFNLSQCLLQRG--HKVIVLTHSYKDRV-GIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEIS 87 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~D 87 (252)
.|.++....+.++..+.+ .+|.++..+..+.. .......|+.++.++....... -..-..+.+.++..+||
T Consensus 7 Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~~~~~~------~~~~~~~~~~l~~~~~D 80 (207)
T PLN02331 7 SGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPD------GLSPDELVDALRGAGVD 80 (207)
T ss_pred eCCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccccCCCc------ccchHHHHHHHHhcCCC
Confidence 455666778888876653 35554444322221 1222456777776654321110 01123456678889999
Q ss_pred EEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 88 IVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 88 vvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
++.+.++...+. ..++. ..... ++.+|..
T Consensus 81 liv~agy~~il~--~~~l~-~~~~~-~iNiHpS 109 (207)
T PLN02331 81 FVLLAGYLKLIP--VELVR-AYPRS-ILNIHPA 109 (207)
T ss_pred EEEEeCcchhCC--HHHHh-hCCCC-EEEEeCc
Confidence 998877654332 11222 22222 5677764
No 203
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=68.07 E-value=54 Score=25.82 Aligned_cols=100 Identities=17% Similarity=0.070 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
|.+.+-..|+.-|++.||+|++...+.+.... ..........+|.. .+|..+.....+...++ ..|+|..
T Consensus 8 GaGswGTALA~~la~ng~~V~lw~r~~~~~~~--i~~~~~N~~yLp~i------~lp~~l~at~Dl~~a~~--~ad~iv~ 77 (329)
T COG0240 8 GAGSWGTALAKVLARNGHEVRLWGRDEEIVAE--INETRENPKYLPGI------LLPPNLKATTDLAEALD--GADIIVI 77 (329)
T ss_pred cCChHHHHHHHHHHhcCCeeEEEecCHHHHHH--HHhcCcCccccCCc------cCCcccccccCHHHHHh--cCCEEEE
Confidence 44456678999999999999999986321111 00011122223321 12222333344555554 4888877
Q ss_pred cCchhHHHHHHHHHH--HhcCCcEEEEecCCC
Q psy8013 92 HSAFSALAHETMMIA--RLLGLKTVFTDHSLF 121 (252)
Q Consensus 92 ~~~~~~~~~~~~~~~--~~~~~p~v~~~h~~~ 121 (252)
--+...+......+. ...+.++|...-|..
T Consensus 78 avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie 109 (329)
T COG0240 78 AVPSQALREVLRQLKPLLLKDAIIVSATKGLE 109 (329)
T ss_pred ECChHHHHHHHHHHhhhccCCCeEEEEecccc
Confidence 776554432222222 123556677777764
No 204
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=67.81 E-value=5.7 Score=27.24 Aligned_cols=133 Identities=14% Similarity=0.037 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
|.+.+-..+|..|+++||+|++++.+.+... .....+.....++. ..++........+...++ +.|+|..
T Consensus 6 GaG~~G~AlA~~la~~g~~V~l~~~~~~~~~--~i~~~~~n~~~~~~------~~l~~~i~~t~dl~~a~~--~ad~Iii 75 (157)
T PF01210_consen 6 GAGNWGTALAALLADNGHEVTLWGRDEEQIE--EINETRQNPKYLPG------IKLPENIKATTDLEEALE--DADIIII 75 (157)
T ss_dssp SSSHHHHHHHHHHHHCTEEEEEETSCHHHHH--HHHHHTSETTTSTT------SBEETTEEEESSHHHHHT--T-SEEEE
T ss_pred CcCHHHHHHHHHHHHcCCEEEEEeccHHHHH--HHHHhCCCCCCCCC------cccCcccccccCHHHHhC--cccEEEe
Confidence 4445667899999999999999998631100 00000000000110 011111122233444454 7798888
Q ss_pred cCchhHHHHHHHHHHH--hcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHH
Q psy8013 92 HSAFSALAHETMMIAR--LLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTV 157 (252)
Q Consensus 92 ~~~~~~~~~~~~~~~~--~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~ 157 (252)
..+....-...-.+.. ..+.++|....|.... ...+...+++..+......+...+...+++.
T Consensus 76 avPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~---~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~ 140 (157)
T PF01210_consen 76 AVPSQAHREVLEQLAPYLKKGQIIISATKGFEPG---TLLLLSEVIEEILPIPRIAVLSGPSFAEEIA 140 (157)
T ss_dssp -S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETT---EEEEHHHHHHHHHSSCGEEEEESS--HHHHH
T ss_pred cccHHHHHHHHHHHhhccCCCCEEEEecCCcccC---CCccHHHHHHHHhhhcceEEeeCccHHHHHH
Confidence 8765544322333332 2345666666664211 1112223344445544455555556666553
No 205
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=67.60 E-value=47 Score=27.31 Aligned_cols=81 Identities=11% Similarity=0.125 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEeccCCCCcceee----e---eCCeEEEEeecccccCCCcccccccchHHHHHHHhhCC
Q psy8013 13 VEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRY----M---TNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREE 85 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~----~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (252)
-..+...+++.|.+.|.++.++............ . ..++.++. -.....+.+++++.+
T Consensus 308 ~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~---------------~~d~~e~~~~l~~~~ 372 (429)
T cd03466 308 EPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILD---------------GADFFDIESYAKELK 372 (429)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEe---------------CCCHHHHHHHHHhcC
Confidence 3567889999999999998665553221110000 0 01111100 122346788888999
Q ss_pred CcEEEecCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 86 ISIVHGHSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 86 ~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
||++..+..- ..++++.++|++-
T Consensus 373 ~dliiG~s~~-------~~~a~~~~ip~~~ 395 (429)
T cd03466 373 IDVLIGNSYG-------RRIAEKLGIPLIR 395 (429)
T ss_pred CCEEEECchh-------HHHHHHcCCCEEE
Confidence 9999998742 3456678999863
No 206
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=67.37 E-value=12 Score=28.35 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=43.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcc---eeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhC--
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG---IRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLRE-- 84 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 84 (252)
.+|++ .++++.|+++|++|.+++.+.+.... .-....++++..++..-.. ......+...++..
T Consensus 15 SsGIG---~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~--------~~~~~~l~~~l~~~~~ 83 (265)
T COG0300 15 SSGIG---AELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSD--------PEALERLEDELKERGG 83 (265)
T ss_pred CchHH---HHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC--------hhHHHHHHHHHHhcCC
Confidence 34554 67999999999999999987432111 1112235556555543211 12334455555554
Q ss_pred CCcEEEecCc
Q psy8013 85 EISIVHGHSA 94 (252)
Q Consensus 85 ~~Dvvh~~~~ 94 (252)
.+|++..+..
T Consensus 84 ~IdvLVNNAG 93 (265)
T COG0300 84 PIDVLVNNAG 93 (265)
T ss_pred cccEEEECCC
Confidence 7888877753
No 207
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=67.27 E-value=45 Score=24.10 Aligned_cols=80 Identities=10% Similarity=0.038 Sum_probs=44.8
Q ss_pred CcHHHHHHHHHHHHHHCC--cEEEEEeccCCCCc-ceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCc
Q psy8013 11 GGVEEHIFNLSQCLLQRG--HKVIVLTHSYKDRV-GIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEIS 87 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~D 87 (252)
.|.+.....+.+.+.+.+ ++|.++.+..++.. .......|+.++.++....... -..-..+.+.++..+||
T Consensus 9 sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~~------~~~~~~~~~~l~~~~~D 82 (200)
T PRK05647 9 SGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSR------EAFDAALVEALDAYQPD 82 (200)
T ss_pred cCCChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCch------hHhHHHHHHHHHHhCcC
Confidence 455667788888887764 66666544322211 1122445677766543221100 01123466778888999
Q ss_pred EEEecCchh
Q psy8013 88 IVHGHSAFS 96 (252)
Q Consensus 88 vvh~~~~~~ 96 (252)
++.+..+..
T Consensus 83 ~iv~~~~~~ 91 (200)
T PRK05647 83 LVVLAGFMR 91 (200)
T ss_pred EEEhHHhhh
Confidence 998876543
No 208
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=67.21 E-value=14 Score=28.37 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=20.8
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEe
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLT 35 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~ 35 (252)
.||.+-.-.+|++.|.+.|++|.++.
T Consensus 3 tGa~GfiG~~l~~~L~~~g~~v~~~~ 28 (306)
T PLN02725 3 AGHRGLVGSAIVRKLEALGFTNLVLR 28 (306)
T ss_pred ccCCCcccHHHHHHHHhCCCcEEEee
Confidence 36777777889999999999887654
No 209
>PRK08177 short chain dehydrogenase; Provisional
Probab=67.14 E-value=18 Score=26.27 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=21.8
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
||....-..+++.|.+.|++|.+++...
T Consensus 8 G~sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 8 GASRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred CCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 5555556678999999999998887653
No 210
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=66.71 E-value=43 Score=23.66 Aligned_cols=106 Identities=10% Similarity=-0.087 Sum_probs=60.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCc----ceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHh
Q psy8013 7 YPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRV----GIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILL 82 (252)
Q Consensus 7 ~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (252)
.+...|.+ .+..+.+...+.|..|.++....+-.. ......+++++... ..... -.....+.+.+.
T Consensus 28 ~~Rv~G~d-l~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~-~g~f~--------~~~~~~i~~~I~ 97 (177)
T TIGR00696 28 QSRVAGPD-LMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGA-FGPLE--------PEERKAALAKIA 97 (177)
T ss_pred CCccChHH-HHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCC--------hHHHHHHHHHHH
Confidence 34567765 467777877888899999877532110 11123466666543 11110 112234677788
Q ss_pred hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCC
Q psy8013 83 REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFG 122 (252)
Q Consensus 83 ~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~ 122 (252)
+.+||+|.+-...+---..........+.++++++-+.+.
T Consensus 98 ~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~~gvGg~fd 137 (177)
T TIGR00696 98 RSGAGIVFVGLGCPKQEIWMRNHRHLKPDAVMIGVGGSFD 137 (177)
T ss_pred HcCCCEEEEEcCCcHhHHHHHHhHHhCCCcEEEEeceeee
Confidence 8999999887654432222334444556677777766543
No 211
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=66.58 E-value=30 Score=21.93 Aligned_cols=92 Identities=13% Similarity=0.060 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
|.++....+++.|.+.|.+|.++..+.+. .......++.++.-... ....+ +-..-.+.|.+.+
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid~d~~~--~~~~~~~~~~~i~gd~~-------------~~~~l-~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVIDRDPER--VEELREEGVEVIYGDAT-------------DPEVL-ERAGIEKADAVVI 68 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSHHH--HHHHHHTTSEEEES-TT-------------SHHHH-HHTTGGCESEEEE
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEECCcHH--HHHHHhcccccccccch-------------hhhHH-hhcCccccCEEEE
Confidence 55678999999999977799999876321 11112344443332211 11112 2223457787777
Q ss_pred cCchhHHHHHHHHHHHh-cC-CcEEEEecC
Q psy8013 92 HSAFSALAHETMMIARL-LG-LKTVFTDHS 119 (252)
Q Consensus 92 ~~~~~~~~~~~~~~~~~-~~-~p~v~~~h~ 119 (252)
..............++. .+ .+++...++
T Consensus 69 ~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 69 LTDDDEENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp ESSSHHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred ccCCHHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 66443333324444443 33 567777766
No 212
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=66.44 E-value=51 Score=24.47 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=47.2
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCc
Q psy8013 102 TMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAV 174 (252)
Q Consensus 102 ~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngv 174 (252)
....++..+.|+++.-.+.-+ ......+...+..+++++.+.+=.+...+ ++...+++. ++.++|..+
T Consensus 91 ~~~~~~~~~~pv~~~g~g~gp---~~~~~~~~~~~~~l~~~~~i~vRD~~S~~-~l~~~g~~~-~~~~~~D~a 158 (286)
T PF04230_consen 91 WLFLAKKLGKPVIILGQGIGP---FRSEEFKKLLRRILSKADYISVRDEYSYE-LLKKLGISG-NVKLVPDPA 158 (286)
T ss_pred HHHHHHhcCCCeEEECceECc---cCCHHHHHHHHHHHhCCCEEEECCHHHHH-HHHHcCCCC-CcEEEeCch
Confidence 455677789999887777522 22334455678888899998877777776 557777755 777777654
No 213
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=66.39 E-value=7.9 Score=27.81 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCC
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYK 39 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~ 39 (252)
-+..|++.|.+.||+|.|+++..+
T Consensus 15 Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 15 GIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp HHHHHHHHHTTTSSEEEEEEESSS
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCC
Confidence 467899999777899999999754
No 214
>PRK09271 flavodoxin; Provisional
Probab=66.04 E-value=41 Score=23.16 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=26.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
|....|..+..+..+++.|...|++|.+.-.
T Consensus 7 Y~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~ 37 (160)
T PRK09271 7 YASLSGNTREVAREIEERCEEAGHEVDWVET 37 (160)
T ss_pred EEcCCchHHHHHHHHHHHHHhCCCeeEEEec
Confidence 5567799999999999999999999887654
No 215
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=65.92 E-value=17 Score=30.55 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
|-..++..+++.|.+.|.++..+...............-. ...+.. .......-.....+..++++.+||++..
T Consensus 370 gdpd~~~~l~~fL~ElGmepv~v~~~~~~~~~~~~l~~ll--~~~~~~----~~~~v~~~~Dl~~l~~~l~~~~~DlliG 443 (515)
T TIGR01286 370 GDPDFVMGLVRFVLELGCEPVHILCTNGTKRWKAEMKALL--AASPYG----QNATVWIGKDLWHLRSLVFTEPVDFLIG 443 (515)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHH--hcCCCC----CccEEEeCCCHHHHHHHHhhcCCCEEEE
Confidence 4456789999999999999765544322111000000000 000000 0000000123456778888999999998
Q ss_pred cCchhHHHHHHHHHHHhcCCcEE
Q psy8013 92 HSAFSALAHETMMIARLLGLKTV 114 (252)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~p~v 114 (252)
+.. ...+++..++|+|
T Consensus 444 ~s~-------~k~~a~~~giPli 459 (515)
T TIGR01286 444 NSY-------GKYIQRDTLVPLI 459 (515)
T ss_pred Cch-------HHHHHHHcCCCEE
Confidence 874 3345677899986
No 216
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=65.06 E-value=9 Score=30.34 Aligned_cols=76 Identities=5% Similarity=-0.008 Sum_probs=41.0
Q ss_pred CCCcEEEecCchhHHHHHHHHHHHhc--CCcEEEEecCC-CCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhh
Q psy8013 84 EEISIVHGHSAFSALAHETMMIARLL--GLKTVFTDHSL-FGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRA 160 (252)
Q Consensus 84 ~~~Dvvh~~~~~~~~~~~~~~~~~~~--~~p~v~~~h~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~ 160 (252)
.+||++.+-.... +.+.....++.. |+|+++.+--. |.+.. ...+.+.+.+|.+.+.=.+..+.+
T Consensus 75 ~~pd~~i~iD~p~-Fnl~lak~~k~~~~~i~viyyi~PqvWAWr~-------~R~~~i~k~~d~vl~ifPFE~~~y---- 142 (347)
T PRK14089 75 KQADKVLLMDSSS-FNIPLAKKIKKAYPKKEIIYYILPQVWAWKK-------GRAKILEKYCDFLASILPFEVQFY---- 142 (347)
T ss_pred cCCCEEEEeCCCC-CCHHHHHHHHhcCCCCCEEEEECccceeeCc-------chHHHHHHHHhhhhccCCCCHHHh----
Confidence 6999988876544 222244444555 79987655432 22211 113344445777766655544322
Q ss_pred ccCCCceEEccCCc
Q psy8013 161 RVNHYNVSVIPNAV 174 (252)
Q Consensus 161 ~~~~~~i~vI~ngv 174 (252)
+ .+++++.|.+
T Consensus 143 g---~~~~~VGhPl 153 (347)
T PRK14089 143 Q---SKATYVGHPL 153 (347)
T ss_pred C---CCCEEECCcH
Confidence 3 2455677764
No 217
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=64.50 E-value=31 Score=21.24 Aligned_cols=88 Identities=11% Similarity=-0.008 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecCchh
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFS 96 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~~ 96 (252)
+..+++.|.+.|+++ +++.. ........|+++..+-...... ........+.+.++..++|+|.......
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~g---Ta~~L~~~Gi~~~~v~~~~~~~-----~~~~g~~~i~~~i~~~~IdlVIn~~~~~ 71 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEG---TAKFLKEHGIEVTEVVNKIGEG-----ESPDGRVQIMDLIKNGKIDLVINTPYPF 71 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHH---HHHHHHHTT--EEECCEEHSTG------GGTHCHHHHHHHHTTSEEEEEEE--TH
T ss_pred HHHHHHHHHHCCCEE--EEChH---HHHHHHHcCCCceeeeeecccC-----ccCCchhHHHHHHHcCCeEEEEEeCCCC
Confidence 467899999999754 45431 1122235666644432211110 0011112578889999999887664321
Q ss_pred H-----HHHHHHHHHHhcCCcEE
Q psy8013 97 A-----LAHETMMIARLLGLKTV 114 (252)
Q Consensus 97 ~-----~~~~~~~~~~~~~~p~v 114 (252)
. -++....++-..++|++
T Consensus 72 ~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 72 SDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHTHHHHHHHHHHHHTTSHEE
T ss_pred cccccCCcHHHHHHHHHcCCCCc
Confidence 1 12234556666788865
No 218
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=63.58 E-value=64 Score=26.61 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeee---------eCCeEEEEeecccccCCCcccccccchHHHHHHHhh
Q psy8013 13 VEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYM---------TNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLR 83 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (252)
-..+...+++.|.+.|.+|..+............. ..++.++. -.....+...+++
T Consensus 311 ~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~---------------~~d~~e~~~~i~~ 375 (435)
T cd01974 311 DPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYP---------------GKDLWHLRSLLFT 375 (435)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEE---------------CCCHHHHHHHHhh
Confidence 34578899999999999996655432211100000 00111111 1234467777888
Q ss_pred CCCcEEEecCchhHHHHHHHHHHHhcCCcEE
Q psy8013 84 EEISIVHGHSAFSALAHETMMIARLLGLKTV 114 (252)
Q Consensus 84 ~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v 114 (252)
.+||++..+..- ..+++..|+|++
T Consensus 376 ~~pDliiG~s~~-------~~~a~~~gip~v 399 (435)
T cd01974 376 EPVDLLIGNTYG-------KYIARDTDIPLV 399 (435)
T ss_pred cCCCEEEECccH-------HHHHHHhCCCEE
Confidence 899999998742 335667899976
No 219
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=63.42 E-value=80 Score=25.63 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=49.0
Q ss_pred HHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecC-ch
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS-AF 95 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~-~~ 95 (252)
-.+-++.|.+.|+.|.++...........+.. ..++..|.. ...+.+++.+.+||-+.-.. ..
T Consensus 18 G~qac~aLkeeg~~vvlvnsnpAti~td~e~A--D~~y~eP~~--------------~E~v~~Ii~~E~~Dailp~~ggq 81 (400)
T COG0458 18 GTQACKALKEEGYGVVLVNSNPATIMTDPELA--DKVYIEPIT--------------KEPVEKIIEKERPDAILPTLGGQ 81 (400)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCccccCCchhc--ceeeeecCc--------------HHHHHHHHHhcCcceeecccCCc
Confidence 45678999999999999988643322222111 233333322 23467788899999765443 33
Q ss_pred hHHHHHHHHHH-----HhcCCcEEEEecCC
Q psy8013 96 SALAHETMMIA-----RLLGLKTVFTDHSL 120 (252)
Q Consensus 96 ~~~~~~~~~~~-----~~~~~p~v~~~h~~ 120 (252)
..+.. +..+. ...|+++|.+--..
T Consensus 82 t~Ln~-~~~l~e~g~l~~~gV~vvgs~~ea 110 (400)
T COG0458 82 TALNA-ALELKEKGVLEKYGVEVVGSDPEA 110 (400)
T ss_pred chhhH-HHHHHHhcchhhcCCEEEecCHHH
Confidence 32321 22222 23478877665443
No 220
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=63.04 E-value=4 Score=32.55 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhhccCCCCCChhhhHHHHHhcCChHHHHHHH
Q psy8013 190 ETLIAGIESAISDLKNGRAISPFKCHETVKSLYNWVDVSERT 231 (252)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~a~~~ 231 (252)
+++++++.+.+....... .....+++.+.+.|||+.+++++
T Consensus 352 ~~~a~~i~~l~~~~~~~~-~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 352 EEFAEAMLKLANDPDLAD-RMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHHHHHhChHHHH-HHHHHHHHHHHHhcCHHHHhhhC
Confidence 556666666665443222 35566777889999999998763
No 221
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=63.02 E-value=20 Score=27.57 Aligned_cols=69 Identities=14% Similarity=0.047 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 18 FNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 18 ~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
..|++.|.+.|++|+=+..+..... ...++++..|.............+.....+.++++..+||-|+.
T Consensus 16 sYLa~lLLekGY~VhGi~Rrss~~n-----~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdEIYN 84 (345)
T COG1089 16 SYLAELLLEKGYEVHGIKRRSSSFN-----TPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDEIYN 84 (345)
T ss_pred HHHHHHHHhcCcEEEEEeeccccCC-----cccceeccccccCCceeEEEeccccchHHHHHHHHhcCchhhee
Confidence 4689999999999997776532111 11122333332221111111122334556888888889987744
No 222
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=62.99 E-value=51 Score=25.28 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=32.8
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||.+..-..|.+.|.+.|++|...... . ..+.....+.+++...+||+|
T Consensus 6 ~GasG~lG~~l~~~l~~~~~~v~~~~r~-~-----------------------------~dl~d~~~~~~~~~~~~pd~V 55 (286)
T PF04321_consen 6 TGASGFLGSALARALKERGYEVIATSRS-D-----------------------------LDLTDPEAVAKLLEAFKPDVV 55 (286)
T ss_dssp ETTTSHHHHHHHHHHTTTSEEEEEESTT-C-----------------------------S-TTSHHHHHHHHHHH--SEE
T ss_pred ECCCCHHHHHHHHHHhhCCCEEEEeCch-h-----------------------------cCCCCHHHHHHHHHHhCCCeE
Confidence 3667777788999999888876665332 0 112234567788888899976
Q ss_pred Eec
Q psy8013 90 HGH 92 (252)
Q Consensus 90 h~~ 92 (252)
...
T Consensus 56 in~ 58 (286)
T PF04321_consen 56 INC 58 (286)
T ss_dssp EE-
T ss_pred ecc
Confidence 433
No 223
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=62.79 E-value=79 Score=25.34 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecC
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS 93 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~ 93 (252)
.....++.++.+.|++|.++......... . ..+ ..+..+. .....+..+++++++|+|....
T Consensus 9 ~~~~~l~~aa~~~G~~v~~~d~~~~~~~~-~-~ad--~~~~~~~-------------~d~~~l~~~~~~~~id~v~~~~ 70 (380)
T TIGR01142 9 ELGKEVAIEAQRLGVEVIAVDRYANAPAM-Q-VAH--RSYVINM-------------LDGDALRAVIEREKPDYIVPEI 70 (380)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCCchh-h-hCc--eEEEcCC-------------CCHHHHHHHHHHhCCCEEEecc
Confidence 34667888899999999988876332111 1 010 1111110 1124566777888999987654
No 224
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.37 E-value=35 Score=21.12 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||.+....++-+.+.+.|.+...+ ...++... ....+...++ ++|+|
T Consensus 5 VGG~~~~~~~~~~~~~~~G~~~~~h-g~~~~~~~-----------------------------~~~~l~~~i~--~aD~V 52 (97)
T PF10087_consen 5 VGGREDRERRYKRILEKYGGKLIHH-GRDGGDEK-----------------------------KASRLPSKIK--KADLV 52 (97)
T ss_pred EcCCcccHHHHHHHHHHcCCEEEEE-ecCCCCcc-----------------------------chhHHHHhcC--CCCEE
Confidence 5888888888999999999888777 22111100 0011333233 78887
Q ss_pred EecCch--hHHHHHHHHHHHhcCCcEEEEe
Q psy8013 90 HGHSAF--SALAHETMMIARLLGLKTVFTD 117 (252)
Q Consensus 90 h~~~~~--~~~~~~~~~~~~~~~~p~v~~~ 117 (252)
.+.... -.....+...++..++|+++.-
T Consensus 53 Iv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 53 IVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred EEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 666532 1233336677888899987764
No 225
>PRK08462 biotin carboxylase; Validated
Probab=61.70 E-value=48 Score=27.33 Aligned_cols=71 Identities=8% Similarity=-0.028 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecC
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS 93 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~ 93 (252)
.....+++.+.+.|++|.++....+.........+ +.+.++... ....+.....+..+.++.++|.||.-.
T Consensus 14 ~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad--~~~~~~~~~------~~~~y~~~~~l~~~~~~~~~D~i~pg~ 84 (445)
T PRK08462 14 EIALRAIRTIQEMGKEAIAIYSTADKDALYLKYAD--AKICIGGAK------SSESYLNIPAIISAAEIFEADAIFPGY 84 (445)
T ss_pred HHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCC--EEEEeCCCc------hhcccCCHHHHHHHHHHcCCCEEEECC
Confidence 34778999999999998877665332111000001 122221110 001122345678888899999998765
No 226
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=61.30 E-value=40 Score=27.74 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|.+.....+++.|.+.|++|+++...
T Consensus 238 G~G~~g~~l~~~L~~~~~~v~vid~~ 263 (453)
T PRK09496 238 GGGNIGYYLAKLLEKEGYSVKLIERD 263 (453)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 55778889999999999999998765
No 227
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=61.13 E-value=60 Score=25.01 Aligned_cols=32 Identities=6% Similarity=-0.134 Sum_probs=22.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.+|+..=.-.....+.++|.+.||+|.++-..
T Consensus 14 ~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 14 TSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 34443333345688999999999999988654
No 228
>PRK03094 hypothetical protein; Provisional
Probab=60.95 E-value=5.5 Score=23.74 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
|+|.-..++.++|.++||+|.=+..
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCc
Confidence 4566678899999999999876543
No 229
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=60.87 E-value=40 Score=21.35 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecCc
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSA 94 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~ 94 (252)
.....+++.|.+.|+++. +... ........|+.+..+.... .....+...+++.++|+|.....
T Consensus 13 ~~~~~~~~~l~~~G~~l~--aT~g---T~~~l~~~gi~~~~v~~~~-----------~~~~~i~~~i~~~~id~vIn~~~ 76 (110)
T cd01424 13 PEAVEIAKRLAELGFKLV--ATEG---TAKYLQEAGIPVEVVNKVS-----------EGRPNIVDLIKNGEIQLVINTPS 76 (110)
T ss_pred hHHHHHHHHHHHCCCEEE--EchH---HHHHHHHcCCeEEEEeecC-----------CCchhHHHHHHcCCeEEEEECCC
Confidence 356789999999999875 3321 1112233566655553321 12245778888999998876432
Q ss_pred hh---HHHHHHHHHHHhcCCcEEEEe
Q psy8013 95 FS---ALAHETMMIARLLGLKTVFTD 117 (252)
Q Consensus 95 ~~---~~~~~~~~~~~~~~~p~v~~~ 117 (252)
.. .-++.....|-..++|++.+.
T Consensus 77 ~~~~~~~~~~iRR~Av~~~ipl~T~~ 102 (110)
T cd01424 77 GKRAIRDGFSIRRAALEYKVPYFTTL 102 (110)
T ss_pred CCccCccHHHHHHHHHHhCCCEEecH
Confidence 11 013336677778899998654
No 230
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=60.41 E-value=22 Score=28.34 Aligned_cols=82 Identities=13% Similarity=0.023 Sum_probs=41.3
Q ss_pred CCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHH-----HHHHHHHhhcCCCEEEEechhhhhhHHHh
Q psy8013 85 EISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIV-----TNKCLEISLAGCNHCICVSHIGKENTVLR 159 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~-----~~~~~~~~~~~~d~vi~~S~~~~~~~~~~ 159 (252)
+..++.+......+ .......+.++|.+-||. +........ ............|.+++.|+..++.+...
T Consensus 78 ~Ak~~i~~~~~~~~----~~~~~~~~~~~i~lwHG~-~~K~~g~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~ 152 (369)
T PF04464_consen 78 RAKYIISDSYFPDL----IYFKKRKNQKYIQLWHGI-PLKKIGYDSPDNKNYRKNYKRNYRNYDYFIVSSEFEKEIFKKA 152 (369)
T ss_dssp HEEEEEESS---T------TS---TTSEEEE--SS---SB--GGG-S---TS-HHHHHHHTT-SEEEESSHHHHHHHHHH
T ss_pred hCcEEEECCCCCcc----cccccCCCcEEEEecCCC-cccccchhccccccchhhhhhhccCCcEEEECCHHHHHHHHHH
Confidence 45677666433321 112334678899999998 543321110 00134456667999999999999888777
Q ss_pred hccCCCceEEcc
Q psy8013 160 ARVNHYNVSVIP 171 (252)
Q Consensus 160 ~~~~~~~i~vI~ 171 (252)
++.+.+++.+..
T Consensus 153 f~~~~~~i~~~G 164 (369)
T PF04464_consen 153 FGYPEDKILVTG 164 (369)
T ss_dssp TT--GGGEEES-
T ss_pred hccCcceEEEeC
Confidence 788776665543
No 231
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=60.31 E-value=10 Score=27.41 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.+|.+..-..|++.|.+.||+|.+-+.+.++.........+..+ .. ..... .....|||
T Consensus 6 i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i--------~~-----------~~~~d--A~~~aDVV 64 (211)
T COG2085 6 IIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLI--------TG-----------GSNED--AAALADVV 64 (211)
T ss_pred EeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcccc--------cc-----------CChHH--HHhcCCEE
Confidence 47888888999999999999999998764432211000000000 00 00111 12357888
Q ss_pred EecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 90 HGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 90 h~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
..--++........-+....+-++|+..-+.
T Consensus 65 vLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 65 VLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred EEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 8887776554333344444555777766554
No 232
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=59.24 E-value=81 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||-.| -..+++.|.+.|++|.++...
T Consensus 7 ~ggd~r-~~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 7 IGGDAR-QLELIRKLEELDAKISLIGFD 33 (287)
T ss_pred EcccHH-HHHHHHHHHHCCCEEEEEecc
Confidence 356555 578999999999999999764
No 233
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=59.15 E-value=1.2e+02 Score=26.11 Aligned_cols=122 Identities=10% Similarity=-0.033 Sum_probs=63.3
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEE
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVH 90 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh 90 (252)
-|.++...++++.|.++|++|.++-.+.+. .......|..++.-+... ....+...-.+.|.+.
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~--~~~~~~~g~~~i~GD~~~--------------~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTR--VDELRERGIRAVLGNAAN--------------EEIMQLAHLDCARWLL 486 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHH--HHHHHHCCCeEEEcCCCC--------------HHHHHhcCccccCEEE
Confidence 477888899999999999999888765321 111122344433322111 1122223345788655
Q ss_pred ecCch--hHHHHHHHHHHH-hcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhhhhhHHHhh
Q psy8013 91 GHSAF--SALAHETMMIAR-LLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRA 160 (252)
Q Consensus 91 ~~~~~--~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~ 160 (252)
+.... .... ....+.+ ...++++...++. .. ....+ ...+|.++...+...+.+....
T Consensus 487 v~~~~~~~~~~-iv~~~~~~~~~~~iiar~~~~-----~~----~~~l~--~~Gad~vv~p~~~~a~~i~~~l 547 (558)
T PRK10669 487 LTIPNGYEAGE-IVASAREKRPDIEIIARAHYD-----DE----VAYIT--ERGANQVVMGEREIARTMLELL 547 (558)
T ss_pred EEcCChHHHHH-HHHHHHHHCCCCeEEEEECCH-----HH----HHHHH--HcCCCEEEChHHHHHHHHHHHh
Confidence 44322 2111 1222222 2345666665542 11 01111 1349999998888887765443
No 234
>PF09318 DUF1975: Domain of unknown function (DUF1975); InterPro: IPR015397 This domain is functionally uncharacterised and found predominantly in the N-terminal region of various prokaryotic alpha-glucosyltransferases.
Probab=58.91 E-value=17 Score=26.10 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=34.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCC
Q psy8013 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKD 40 (252)
Q Consensus 2 v~~~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 40 (252)
++.......||++.....-++-|.+.|.++.+++.....
T Consensus 5 i~~~i~~~~sGie~A~~~R~~lF~~~~~~~~ivt~~y~~ 43 (203)
T PF09318_consen 5 INNNIGFNNSGIEHAQLKRLKLFKENGIPAKIVTRDYNP 43 (203)
T ss_pred EecCcCcccchhHHHHHHHHHHHHHCCCCeEEEEeeCCh
Confidence 456677789999999999999999999999999997653
No 235
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=58.41 E-value=59 Score=27.02 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccCCCCcceee----eeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEE
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRY----MTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVH 90 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh 90 (252)
.....+++.|.+.|.+|..+............ ..++..+.. -.....+.+.+++.+||++.
T Consensus 336 ~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~---------------~~d~~e~~~~i~~~~pDl~i 400 (456)
T TIGR01283 336 VKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLD---------------DANPRELLKLLLEYKADLLI 400 (456)
T ss_pred chHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEe---------------CCCHHHHHHHHhhcCCCEEE
Confidence 46678888899999998776543221110000 001111100 01344677888899999998
Q ss_pred ecCchhHHHHHHHHHHHhcCCcEEEEe
Q psy8013 91 GHSAFSALAHETMMIARLLGLKTVFTD 117 (252)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~p~v~~~ 117 (252)
.+.. ...+++..++|++...
T Consensus 401 g~~~-------~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 401 AGGK-------ERYTALKLGIPFCDIN 420 (456)
T ss_pred Eccc-------hHHHHHhcCCCEEEcc
Confidence 7743 2234556899987543
No 236
>PLN02735 carbamoyl-phosphate synthase
Probab=58.32 E-value=1.7e+02 Score=27.76 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecC
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS 93 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~ 93 (252)
..+.+.+++|.+.|+++.++....+.........+ +.+..| .....+.+++++.++|.||...
T Consensus 595 ~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD--~~y~~p--------------l~~e~vl~i~~~e~~d~Vi~~~ 657 (1102)
T PLN02735 595 YCCCHASFALQDAGYETIMMNSNPETVSTDYDTSD--RLYFEP--------------LTVEDVLNVIDLERPDGIIVQF 657 (1102)
T ss_pred eeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCC--eEEEEe--------------CCHHHHHHHHHHhCCCEEEECC
Confidence 34567889999999998888776443221111111 112221 1244677888999999999754
No 237
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=57.21 E-value=27 Score=28.59 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
|-......+++.|.+.|.+|..+.............. . ..... ... .-.........+.+.+++.+||++..
T Consensus 306 ~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~-~--~~~~~--~~~---~~~v~~~d~~el~~~i~~~~pdliig 377 (428)
T cd01965 306 GDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRME-L--LASLE--GIP---AEVVFVGDLWDLESLAKEEPVDLLIG 377 (428)
T ss_pred cChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHH-H--hhhhc--CCC---ceEEECCCHHHHHHHhhccCCCEEEE
Confidence 4455788899999999988876554322211100000 0 00000 000 00011123456777888899999999
Q ss_pred cCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 92 HSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
+.... .+++..++|++.
T Consensus 378 ~~~~~-------~~a~~~~ip~i~ 394 (428)
T cd01965 378 NSHGR-------YLARDLGIPLVR 394 (428)
T ss_pred CchhH-------HHHHhcCCCEEE
Confidence 87432 345567999863
No 238
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=56.99 E-value=91 Score=25.77 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEe-ecccccCCCcccccccchHHHHHHHhhCCCcEEEecC
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYC-PIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS 93 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~ 93 (252)
....+++++.+.|++|.+++...+...... .... +.+.+ |... .........+.++.++.++|.||.-.
T Consensus 13 ~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~-~~ad-~~~~~~~~~~-------~~~y~d~~~l~~~a~~~~id~I~p~~ 82 (451)
T PRK08591 13 IALRIIRACKELGIKTVAVHSTADRDALHV-QLAD-EAVCIGPAPS-------KKSYLNIPAIISAAEITGADAIHPGY 82 (451)
T ss_pred HHHHHHHHHHHcCCeEEEEcChhhccCCCH-hHCC-EEEEeCCCCc-------ccccCCHHHHHHHHHHhCCCEEEECC
Confidence 478899999999999998876533211100 0011 12222 1100 01112234567777888999998643
No 239
>PRK06988 putative formyltransferase; Provisional
Probab=56.69 E-value=91 Score=24.41 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcc--------eeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhh
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG--------IRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLR 83 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (252)
|...+.....+.|.+.|++|..+.+..+.+.. ......|+.++.... . .-..+.+.++.
T Consensus 9 Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~------------~-~~~~~~~~l~~ 75 (312)
T PRK06988 9 AYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPAD------------P-NDPELRAAVAA 75 (312)
T ss_pred eCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEcccc------------C-CCHHHHHHHHh
Confidence 44456677788888889998876654332211 011223444332110 0 11235566888
Q ss_pred CCCcEEEecCch
Q psy8013 84 EEISIVHGHSAF 95 (252)
Q Consensus 84 ~~~Dvvh~~~~~ 95 (252)
.+||++.+..+.
T Consensus 76 ~~~Dliv~~~~~ 87 (312)
T PRK06988 76 AAPDFIFSFYYR 87 (312)
T ss_pred cCCCEEEEehhc
Confidence 999999877653
No 240
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=56.52 E-value=13 Score=28.13 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=23.7
Q ss_pred CCCcHH--HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 9 NVGGVE--EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 9 ~~GG~~--~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
..||++ +.+.+|+-+|+++|.+|-++=.+
T Consensus 8 ~KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 8 GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 578877 45789999999999999888543
No 241
>PLN02735 carbamoyl-phosphate synthase
Probab=56.45 E-value=1.1e+02 Score=28.97 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=35.4
Q ss_pred HHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEec
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGH 92 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~ 92 (252)
..+++++|.+.|++|.++-.............+ +++..|. ....+.+++++.+||.|+..
T Consensus 46 G~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD--~~yi~p~--------------~~e~v~~ii~~e~~D~Iip~ 105 (1102)
T PLN02735 46 GTQACKALKEEGYEVVLINSNPATIMTDPETAD--RTYIAPM--------------TPELVEQVIAKERPDALLPT 105 (1102)
T ss_pred HHHHHHHHHHcCCEEEEEeCCcccccCChhhCc--EEEeCCC--------------CHHHHHHHHHHhCCCEEEEC
Confidence 567999999999999888765321111111111 1121121 11246677889999999874
No 242
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=56.20 E-value=94 Score=24.33 Aligned_cols=72 Identities=10% Similarity=-0.004 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce-----------eeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI-----------RYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
|...+.....+.|.+.||+|..+....+..... .....|+.++..... . .......
T Consensus 7 Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~------------~-~~~~~~~ 73 (313)
T TIGR00460 7 GTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQ------------R-QLEELPL 73 (313)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCC------------C-cHHHHHH
Confidence 334466777788888899987555432221110 012234444332111 0 1133455
Q ss_pred HhhCCCcEEEecCchh
Q psy8013 81 LLREEISIVHGHSAFS 96 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~ 96 (252)
++..+||++.+..+..
T Consensus 74 l~~~~~Dliv~~~~~~ 89 (313)
T TIGR00460 74 VRELKPDVIVVVSFGK 89 (313)
T ss_pred HHhhCCCEEEEccchh
Confidence 7788999998877543
No 243
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=56.05 E-value=1.2e+02 Score=25.21 Aligned_cols=71 Identities=8% Similarity=0.012 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecC
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS 93 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~ 93 (252)
.....+++++.+.|++|.++....+...... .... +.+.++... . ...+.....+.++.++.++|+||.-.
T Consensus 12 ~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~-~~aD-~~~~~~~~~--~----~~~y~d~~~l~~~a~~~~id~I~pg~ 82 (449)
T TIGR00514 12 EIALRILRACKELGIKTVAVHSTADRDALHV-LLAD-EAVCIGPAP--S----AKSYLNIPNIISAAEITGADAIHPGY 82 (449)
T ss_pred HHHHHHHHHHHHcCCeEEEEEChhhhccccc-ccCC-EEEEcCCCC--c----hhchhCHHHHHHHHHHhCCCEEEeCC
Confidence 3478899999999999998876422111100 0011 112221000 0 01112234577777889999998644
No 244
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=56.00 E-value=13 Score=21.94 Aligned_cols=50 Identities=22% Similarity=0.182 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhccCCCCCChhhhHHHHHhcCChH----HHHHHHHHHHHHHhhc
Q psy8013 192 LIAGIESAISDLKNGRAISPFKCHETVKSLYNWV----DVSERTEIVYKRVTQE 241 (252)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~----~~a~~~~~~y~~~~~~ 241 (252)
..+.+.+||..+.+..+.......+++.+.|.++ +....+....+..+++
T Consensus 5 y~~mI~eAI~~l~er~GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~ 58 (77)
T PF00538_consen 5 YSDMILEAIKALKERKGSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEK 58 (77)
T ss_dssp HHHHHHHHHHHCCSSSSEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHC
Confidence 5678889999888877778888999999999632 3556666677776654
No 245
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=55.88 E-value=68 Score=23.87 Aligned_cols=81 Identities=19% Similarity=0.106 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHHHC-CcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEE
Q psy8013 12 GVEEHIFNLSQCLLQR-GHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVH 90 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh 90 (252)
|...++.-+..+.+.+ +.+|.+++.... .... ..-......++.++||.+.
T Consensus 14 g~s~~idl~lDErAdRedI~vrv~gsGaK--m~pe--------------------------~~~~~~~~~~~~~~pDf~i 65 (277)
T PRK00994 14 GMSPVIDLLLDERADREDIDVRVVGSGAK--MGPE--------------------------EVEEVVKKMLEEWKPDFVI 65 (277)
T ss_pred chHHHHHHHHHhhhcccCceEEEeccCCC--CCHH--------------------------HHHHHHHHHHHhhCCCEEE
Confidence 5666677777777777 777777776521 1100 0011234455677888877
Q ss_pred ecCchhHHH--HHHHHHHHhcCCcEEEEecCC
Q psy8013 91 GHSAFSALA--HETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 91 ~~~~~~~~~--~~~~~~~~~~~~p~v~~~h~~ 120 (252)
.-++.+... ..+.-..+..++|.|+.--+.
T Consensus 66 ~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 66 VISPNPAAPGPKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred EECCCCCCCCchHHHHHHHhcCCCEEEEcCCC
Confidence 776554332 012333344578877655443
No 246
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=55.88 E-value=1.7e+02 Score=27.68 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEec-Cc
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGH-SA 94 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~-~~ 94 (252)
....++++|.+.|++|.++-...+.........+ +++.-| .....+..++++.+||.|... ..
T Consensus 576 ~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD--~~y~e~--------------~~~e~v~~i~~~e~~dgVi~~~g~ 639 (1066)
T PRK05294 576 CCVHAVLALREAGYETIMVNCNPETVSTDYDTSD--RLYFEP--------------LTLEDVLEIIEKEKPKGVIVQFGG 639 (1066)
T ss_pred hHHHHHHHHHHCCCEEEEEeCCccccccccchhh--heeecC--------------CCHHHHHHHHHHcCCCEEEEEeCc
Confidence 5578899999999998887665322111110011 011100 123456778888999977654 32
Q ss_pred hhHHHHHHHHHHHhcCCcEEE
Q psy8013 95 FSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 95 ~~~~~~~~~~~~~~~~~p~v~ 115 (252)
...+. ........|+|++.
T Consensus 640 ~~~~~--la~~le~~Gi~ilg 658 (1066)
T PRK05294 640 QTPLK--LAKALEAAGVPILG 658 (1066)
T ss_pred hhHHH--HHHHHHHCCCceeC
Confidence 32222 22333446777653
No 247
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=55.84 E-value=19 Score=24.78 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=26.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|...-|-....+..+|..|.+.|++|++.-..
T Consensus 7 Ystr~GqT~kIA~~iA~~L~e~g~qvdi~dl~ 38 (175)
T COG4635 7 YSTRDGQTRKIAEYIASHLRESGIQVDIQDLH 38 (175)
T ss_pred EecCCCcHHHHHHHHHHHhhhcCCeeeeeehh
Confidence 44556888888999999999999999987654
No 248
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=55.84 E-value=17 Score=25.87 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 13 VEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.+++-..||+++..+|++|++++..
T Consensus 28 SG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 28 SGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred cCHHHHHHHHHHHHCCCEEEEEecC
Confidence 3456788999999999999999986
No 249
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=55.62 E-value=25 Score=24.91 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=22.5
Q ss_pred Cc-HHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 11 GG-VEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 11 GG-~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
|| ......++++.|.+.|++|.++.+..
T Consensus 8 Gsiaa~ka~~lir~L~~~g~~V~vv~T~~ 36 (181)
T TIGR00421 8 GASGVIYGIRLLEVLKEAGVEVHLVISDW 36 (181)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 44 34567899999999999999998863
No 250
>CHL00194 ycf39 Ycf39; Provisional
Probab=55.52 E-value=16 Score=28.40 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++||+|++++..
T Consensus 6 tGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 6 IGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4777888888999999999999999865
No 251
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=55.39 E-value=76 Score=26.58 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 13 VEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.+++-..||+++..+|++|++++..
T Consensus 281 SGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 281 SGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred chHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4567788999999999999999864
No 252
>KOG0780|consensus
Probab=55.07 E-value=13 Score=29.76 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=24.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
.+|-.+.+..||..+.++|+.+-++|.+.
T Consensus 111 G~GKTTtc~KlA~y~kkkG~K~~LvcaDT 139 (483)
T KOG0780|consen 111 GSGKTTTCTKLAYYYKKKGYKVALVCADT 139 (483)
T ss_pred CCCcceeHHHHHHHHHhcCCceeEEeecc
Confidence 35667888999999999999999999863
No 253
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=54.79 E-value=22 Score=20.29 Aligned_cols=21 Identities=19% Similarity=0.244 Sum_probs=17.0
Q ss_pred HHHHHHHHHHCCcEEEEEecc
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~ 37 (252)
-...+..|.+.|++|+|+=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 456788888899999999764
No 254
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=54.74 E-value=14 Score=28.25 Aligned_cols=50 Identities=18% Similarity=0.289 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhhccCCCCCChhhhHHHHHhcCChHHHHHHHHHHHHHHhh
Q psy8013 190 ETLIAGIESAISDLKNGRAISPFKCHETVKSLYNWVDVSERTEIVYKRVTQ 240 (252)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~a~~~~~~y~~~~~ 240 (252)
+.+.+++...++...... ......++.+.+.|+|+..++++.++|.....
T Consensus 330 ~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 330 EELADALEQLLEDPELRE-ELGEAARERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 455555555554431111 11222455566899999999999999988764
No 255
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=54.16 E-value=1.1e+02 Score=28.67 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEec
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGH 92 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~ 92 (252)
..+++++|.+.|++|.++..............+ .++..|. ....+.+++++.+||.|+..
T Consensus 29 g~q~~kalke~G~~vi~v~~np~~~~~~~~~aD--~~y~~p~--------------~~~~v~~ii~~e~~DaIlp~ 88 (1050)
T TIGR01369 29 GSQACKALKEEGYRVILVNSNPATIMTDPEMAD--KVYIEPL--------------TPEAVEKIIEKERPDAILPT 88 (1050)
T ss_pred HHHHHHHHHHcCCEEEEEecchhhccCChhcCC--EEEECCC--------------CHHHHHHHHHHhCCCEEEEC
Confidence 357899999999999998876432111111111 1122221 12356778888999999875
No 256
>PRK08309 short chain dehydrogenase; Provisional
Probab=53.73 E-value=23 Score=24.93 Aligned_cols=27 Identities=26% Similarity=0.472 Sum_probs=21.4
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||. .+...+++.|.+.|++|.+++.+
T Consensus 6 tGGt-G~gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 6 IGGT-GMLKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred ECcC-HHHHHHHHHHHHCcCEEEEEECC
Confidence 3665 35677999999999999988754
No 257
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=53.68 E-value=14 Score=28.10 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=23.6
Q ss_pred CCCcHH--HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 9 NVGGVE--EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 9 ~~GG~~--~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
..||++ +.+.+||..|+++|+.|-++=.+
T Consensus 8 gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 8 GKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 468776 56789999999999998888554
No 258
>KOG0025|consensus
Probab=53.47 E-value=1.1e+02 Score=23.91 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=50.4
Q ss_pred chHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEechhh
Q psy8013 73 SIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIG 152 (252)
Q Consensus 73 ~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 152 (252)
.++.|.++++-++-|-|.-+...+..+-....+|+..|++.|-.+++-. +.. .+... ++. -.||.||+-++-.
T Consensus 148 AyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~---~ie-el~~~-Lk~--lGA~~ViTeeel~ 220 (354)
T KOG0025|consen 148 AYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRP---NIE-ELKKQ-LKS--LGATEVITEEELR 220 (354)
T ss_pred HHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCc---cHH-HHHHH-HHH--cCCceEecHHHhc
Confidence 4667888888888998888888877776788889999999988877732 111 11111 111 2477777776644
Q ss_pred hh
Q psy8013 153 KE 154 (252)
Q Consensus 153 ~~ 154 (252)
..
T Consensus 221 ~~ 222 (354)
T KOG0025|consen 221 DR 222 (354)
T ss_pred ch
Confidence 33
No 259
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=53.44 E-value=29 Score=22.93 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=24.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCcE-EEEEecc
Q psy8013 7 YPNVGGVEEHIFNLSQCLLQRGHK-VIVLTHS 37 (252)
Q Consensus 7 ~P~~GG~~~~~~~l~~~L~~~G~~-V~v~~~~ 37 (252)
+|..+-..+..+++++.+.+.||+ +.|+...
T Consensus 10 ~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 10 PAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 566555668899999999999998 5787765
No 260
>PHA01633 putative glycosyl transferase group 1
Probab=53.32 E-value=19 Score=28.47 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHhhccCCCCCChhhhHHHHHhcCChHHHHHHHH
Q psy8013 190 ETLIAGIESAISDLKNGRAISPFKCHETVKSLYNWVDVSERTE 232 (252)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~a~~~~ 232 (252)
++++++|..++..... ..........++.|+|+.++++++
T Consensus 295 ~~la~ai~~~~~~~~~---~~~~~~~~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 295 EDMANAIILAFELQDR---EERSMKLKELAKKYDIRNLYTRFL 334 (335)
T ss_pred HHHHHHHHHHHhccCh---hhhhHHHHHHHHhcCHHHHHHHhh
Confidence 6677777766554321 122223357788999999999876
No 261
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=53.14 E-value=75 Score=23.58 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
..|-.+.+..|++.|.++|+.|-++-.
T Consensus 11 gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 11 DSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 467888899999999999999999854
No 262
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=52.87 E-value=59 Score=20.79 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=15.8
Q ss_pred HHHHHHHHHHCCcEEEEEec
Q psy8013 17 IFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~ 36 (252)
...++..|.+.||+|.++-.
T Consensus 17 l~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEES
T ss_pred HHHHHHHHHHCCCeEEEECC
Confidence 56678888888999997744
No 263
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=52.63 E-value=76 Score=22.04 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=26.2
Q ss_pred CCCCcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
+..+|=.+.+..+++.|.++|+.|.++-...
T Consensus 10 ~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 10 YKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred cCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 4457888999999999999999999886643
No 264
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=52.51 E-value=99 Score=23.30 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=55.9
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEE
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVH 90 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh 90 (252)
||..- ...+++.|.+.|+ |.+-+...-+.........+..+..= -+.....+..++++++++.|.
T Consensus 7 gGTtE-~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G-------------~lg~~~~l~~~l~~~~i~~vI 71 (249)
T PF02571_consen 7 GGTTE-GRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVG-------------RLGDEEGLAEFLRENGIDAVI 71 (249)
T ss_pred echHH-HHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEEC-------------CCCCHHHHHHHHHhCCCcEEE
Confidence 55543 6889999999997 44433321111110001111222111 111345788999999999764
Q ss_pred -ecCchhH-HHHHHHHHHHhcCCcEEEEecCCCC
Q psy8013 91 -GHSAFSA-LAHETMMIARLLGLKTVFTDHSLFG 122 (252)
Q Consensus 91 -~~~~~~~-~~~~~~~~~~~~~~p~v~~~h~~~~ 122 (252)
+..++.. ....+..+++..|+|++-..+..+.
T Consensus 72 DATHPfA~~is~na~~a~~~~~ipylR~eRp~~~ 105 (249)
T PF02571_consen 72 DATHPFAAEISQNAIEACRELGIPYLRFERPSWQ 105 (249)
T ss_pred ECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcc
Confidence 4444432 3444677889999999988777654
No 265
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=52.51 E-value=17 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 13 VEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.+......++.|.+.|++|+|+.+.
T Consensus 18 gG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 18 GGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3556788899999999999999865
No 266
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.45 E-value=1.4e+02 Score=25.12 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=28.8
Q ss_pred HHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 76 LVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 76 ~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
...+.+-+.+||||.+-.....-..-...-+...|-=+..|+|..
T Consensus 318 ~~LRa~LRqDPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtn 362 (500)
T COG2804 318 RALRAILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTN 362 (500)
T ss_pred HHHHHHhccCCCeEEEeccCCHHHHHHHHHHHhcCCeEeeecccC
Confidence 344445567999998876544333223344556787788899986
No 267
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=52.19 E-value=1.3e+02 Score=28.36 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=36.0
Q ss_pred HHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEec
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGH 92 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~ 92 (252)
..+++++|.+.|++|.++.............. -.++..| .....+.+++++.+||.|+..
T Consensus 30 g~q~~~aL~e~G~~vi~v~~np~~~~~d~~~a--d~~y~ep--------------~~~e~l~~ii~~e~~D~Iip~ 89 (1068)
T PRK12815 30 GTQACLALKEEGYQVVLVNPNPATIMTDPAPA--DTVYFEP--------------LTVEFVKRIIAREKPDALLAT 89 (1068)
T ss_pred HHHHHHHHHHcCCEEEEEeCCcchhhcCcccC--CeeEECC--------------CCHHHHHHHHHHhCcCEEEEC
Confidence 46789999999999998876532111111000 0111111 123457778889999999874
No 268
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=51.98 E-value=35 Score=29.49 Aligned_cols=47 Identities=9% Similarity=-0.013 Sum_probs=30.5
Q ss_pred hhHHHHHHHHH-hhccCCCCC-----ChhhhHHHHHh---cCChHHHHHHHHHHHH
Q psy8013 190 ETLIAGIESAI-SDLKNGRAI-----SPFKCHETVKS---LYNWVDVSERTEIVYK 236 (252)
Q Consensus 190 ~~~~~~l~~~~-~~~~~~~~~-----~~~~~~~~~~~---~~sw~~~a~~~~~~y~ 236 (252)
+++.++|.+++ ......... -....++.++. .|||.+++++|.+.|.
T Consensus 544 ~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 544 EALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 67778887777 433332100 12334555666 7999999999999873
No 269
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=51.91 E-value=8.8 Score=22.93 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|+|.-..++.++|.++||+|.=+...
T Consensus 5 AVE~~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 5 AVEEGLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred EecCCchHHHHHHHHCCCEEEecCCc
Confidence 34555678899999999998866644
No 270
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=51.53 E-value=21 Score=26.10 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+.+-..++..|.+.||+|.++...
T Consensus 6 IGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 6 LGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3667777888999999999999987654
No 271
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=51.47 E-value=27 Score=27.06 Aligned_cols=28 Identities=29% Similarity=0.208 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++||+|.++...
T Consensus 10 tGatGfIG~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 10 TGASGYIASWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred ECChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 4778888888999999999999888764
No 272
>PHA00452 T3/T7-like RNA polymerase
Probab=50.88 E-value=2e+02 Score=26.23 Aligned_cols=106 Identities=13% Similarity=0.014 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHH-HCCcEEEEEeccCCCCcceeeeeC-CeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 12 GVEEHIFNLSQCLL-QRGHKVIVLTHSYKDRVGIRYMTN-GLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 12 G~~~~~~~l~~~L~-~~G~~V~v~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.+..+..+.++.+. +.+..|...|+.+-. ....+... ..+|... ...... .....-.....-++......|..|
T Consensus 637 ~im~wL~~~a~~i~~~~~~pv~W~TP~Glp-V~Q~Y~k~~~~~v~t~-~~~~~~--i~~~~~~~~~d~~Kq~~a~~PNFI 712 (807)
T PHA00452 637 EAMNWLQQAAKLLAAKGAEALHWTTPTGFP-VWQEYRKPEEKRVRLR-LMGVAR--VQLYVNTDTIDARKHASGIAPNFV 712 (807)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCCCE-EEeeecCCCcEEEEEe-ecccee--EEeccCCCCCCHHHHhcccCCchh
Confidence 34457778888888 777888888876321 11121111 1111111 000000 000000001223444556789999
Q ss_pred EecCchhHHHHHHHHHHHhcCCcEEEEecCCCCC
Q psy8013 90 HGHSAFSALAHETMMIARLLGLKTVFTDHSLFGF 123 (252)
Q Consensus 90 h~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~ 123 (252)
|+........ ....+...|+--+.++||.+..
T Consensus 713 HSLDAsHm~~--t~~~~~~~g~~~fa~VHDsfwT 744 (807)
T PHA00452 713 HSLDASHLRL--TVVACAEKGIESFAVIHDSFGT 744 (807)
T ss_pred hhhhHHHHHH--HHHHHHhcCCCcEEEeccCccc
Confidence 9998654332 4444555566668999998653
No 273
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=50.64 E-value=75 Score=22.77 Aligned_cols=35 Identities=11% Similarity=-0.021 Sum_probs=24.9
Q ss_pred hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecC
Q psy8013 83 REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHS 119 (252)
Q Consensus 83 ~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 119 (252)
...||+|.+.++..... +..=+...++|+|..+-.
T Consensus 125 ~~~Pdlviv~~~~~~~~--ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 125 FRLPDLVIVLDPRKEHQ--AIREASKLGIPVIAIVDT 159 (193)
T ss_pred ccCCCEEEEeCCccchH--HHHHHHHcCCCEEEEecC
Confidence 35799998888654433 566678889999876543
No 274
>KOG3076|consensus
Probab=50.63 E-value=58 Score=23.26 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=53.3
Q ss_pred CcHHHHHHHHHHHHHH--C--CcEEEEEeccCCCCcc-eeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCC
Q psy8013 11 GGVEEHIFNLSQCLLQ--R--GHKVIVLTHSYKDRVG-IRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREE 85 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~--~--G~~V~v~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (252)
.|.+.-...|...-.. . ..+|.++.....+... ......|+...-+|......+. ..-..|.+.+.+.+
T Consensus 14 SGtGsNlqaLid~~r~~~l~~~a~VvlviSnk~~~~GL~rA~~~gIPt~vip~k~~a~R~------~~d~eL~~~l~e~~ 87 (206)
T KOG3076|consen 14 SGTGSNLQALIDATRDGSLGPNADVVLVISNKKGVYGLERAADAGIPTLVIPHKRFASRE------KYDNELAEVLLELG 87 (206)
T ss_pred ecCchhHHHHHHhhcCCCcCCCceEEEEEeccccchhhhHHHHCCCCEEEeccccccccc------cCcHHHHHHHHHhC
Confidence 3444455555555432 1 2456655554322211 1234567777666654221111 11156888888999
Q ss_pred CcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 86 ISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 86 ~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
+|+|.+-++.-.++ +-++... +.. |+.+|-.
T Consensus 88 ~d~v~lAG~M~iLs--~~fl~~~-~~~-iiNIHPa 118 (206)
T KOG3076|consen 88 TDLVCLAGYMRILS--GEFLSQL-PKR-IINIHPA 118 (206)
T ss_pred CCEEEehhhHHHcC--HHHHhhc-ccc-eEecccc
Confidence 99999998876554 4444433 333 5666654
No 275
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=50.56 E-value=1.2e+02 Score=23.52 Aligned_cols=98 Identities=11% Similarity=0.016 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHHHHHC--CcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcE
Q psy8013 11 GGVEEHIFNLSQCLLQR--GHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISI 88 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dv 88 (252)
.|.++....|..+.... +++|.++..+.++... .....|+.++.++.... .....-..+.+.++..++|+
T Consensus 97 Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~-lA~~~gIp~~~~~~~~~-------~~~~~~~~~~~~l~~~~~Dl 168 (286)
T PRK13011 97 SKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEP-LAAWHGIPFHHFPITPD-------TKPQQEAQVLDVVEESGAEL 168 (286)
T ss_pred cCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHH-HHHHhCCCEEEeCCCcC-------chhhhHHHHHHHHHHhCcCE
Confidence 34456667777766543 4677776554332211 13455677666653211 00111234667788899999
Q ss_pred EEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 89 VHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 89 vh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
+.+.++...+. ..++.. ..-. ++-+|..
T Consensus 169 ivlagy~~il~--~~~l~~-~~~~-iiNiHpS 196 (286)
T PRK13011 169 VVLARYMQVLS--PELCRK-LAGR-AINIHHS 196 (286)
T ss_pred EEEeChhhhCC--HHHHhh-ccCC-eEEeccc
Confidence 98887655443 222222 2222 5677754
No 276
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=50.54 E-value=31 Score=24.63 Aligned_cols=28 Identities=14% Similarity=0.065 Sum_probs=21.3
Q ss_pred CcHHHHHH--HHHHHHHHCCcEEEEEeccC
Q psy8013 11 GGVEEHIF--NLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 11 GG~~~~~~--~l~~~L~~~G~~V~v~~~~~ 38 (252)
|+...+-. ++++.|.+.|++|+++....
T Consensus 9 Gs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 9 GSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred cHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 55554433 89999999999999888753
No 277
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=49.99 E-value=22 Score=26.75 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=20.1
Q ss_pred CCCCcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
|..||+. |+-++++.||+|.+.-+..
T Consensus 29 ~PyGGa~-----mAiefAeAGHDVVLaePn~ 54 (340)
T COG4007 29 PPYGGAR-----MAIEFAEAGHDVVLAEPNR 54 (340)
T ss_pred CCCCchH-----HHHHHHHcCCcEEeecCCc
Confidence 4457765 7888999999998887754
No 278
>PRK11519 tyrosine kinase; Provisional
Probab=49.97 E-value=1.4e+02 Score=26.70 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|-.+.+.+||..|+..|..|-++-.+
T Consensus 539 GKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 539 GKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 66778999999999999999988554
No 279
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=49.93 E-value=1.1e+02 Score=25.10 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=37.8
Q ss_pred HHHHHHhcCCcEEEEecCCCC-CCc--hhhHHHHHH-HHHhhcCCCEEEEechhhhhhHHHhhccCCCceEEccCCcc
Q psy8013 102 TMMIARLLGLKTVFTDHSLFG-FAD--SSAIVTNKC-LEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVD 175 (252)
Q Consensus 102 ~~~~~~~~~~p~v~~~h~~~~-~~~--~~~~~~~~~-~~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ngvd 175 (252)
..-++...+..+|+..++.-. ..+ .......+. ...++.+||.+|+.+-..--.-....|+ .+.++|-+-|
T Consensus 257 ~~~a~~~l~~~vi~~~~~~~~~~~~~p~n~~v~~~~p~~~~l~~ad~vI~hGG~gtt~eaL~~gv---P~vv~P~~~D 331 (406)
T COG1819 257 VLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVPQLELLPRADAVIHHGGAGTTSEALYAGV---PLVVIPDGAD 331 (406)
T ss_pred HHHHHhcCCcEEEEeccccccccccCCCceEEecCCCHHHHhhhcCEEEecCCcchHHHHHHcCC---CEEEecCCcc
Confidence 334455566667777666110 000 000011111 3457888999999987554433334444 6778887744
No 280
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=49.92 E-value=50 Score=27.60 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccCCCCcceee----eeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEE
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRY----MTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVH 90 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh 90 (252)
.....|++.|.+.|.+|..+............ ..++..+. . -.....+.+.+++.+||++.
T Consensus 334 ~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~--~-------------d~~~~e~~~~i~~~~pDlii 398 (475)
T PRK14478 334 VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMI--D-------------DANPRELYKMLKEAKADIML 398 (475)
T ss_pred chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEE--e-------------CCCHHHHHHHHhhcCCCEEE
Confidence 46778889899999998877654322111000 00011000 0 01234566778888999999
Q ss_pred ecCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 91 GHSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
.+.. ...++...++|++-
T Consensus 399 g~s~-------~~~~a~k~giP~~~ 416 (475)
T PRK14478 399 SGGR-------SQFIALKAGMPWLD 416 (475)
T ss_pred ecCc-------hhhhhhhcCCCEEE
Confidence 9753 23456778999873
No 281
>smart00526 H15 Domain in histone families 1 and 5.
Probab=49.62 E-value=47 Score=18.75 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhccCCCCCChhhhHHHHHhcCChH
Q psy8013 192 LIAGIESAISDLKNGRAISPFKCHETVKSLYNWV 225 (252)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~ 225 (252)
..+.|.+|+..+....+........++.+.|...
T Consensus 7 ~~~mI~eAI~~l~er~GsS~~aI~kyi~~~~~~~ 40 (66)
T smart00526 7 YSEMITEAISALKERKGSSLQAIKKYIEANYKVL 40 (66)
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCC
Confidence 5677889999888888788889999999998753
No 282
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=49.59 E-value=1.6e+02 Score=27.82 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEec
Q psy8013 18 FNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGH 92 (252)
Q Consensus 18 ~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~ 92 (252)
.+++++|.+.|++|.++..............+ .++..|. ....+.+++++++||.|+..
T Consensus 31 ~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD--~~y~~p~--------------~~e~l~~ii~~e~~D~Iip~ 89 (1066)
T PRK05294 31 TQACKALREEGYRVVLVNSNPATIMTDPEMAD--ATYIEPI--------------TPEFVEKIIEKERPDAILPT 89 (1066)
T ss_pred HHHHHHHHHcCCEEEEEcCCcccccCCcccCC--EEEECCC--------------CHHHHHHHHHHHCcCEEEEC
Confidence 46899999999999988765321111111111 1111121 12456777888999998864
No 283
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=49.52 E-value=1.1e+02 Score=23.86 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCcc-----------eeeeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG-----------IRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
|...+.....+.|.+.||++..+....+.+.. ......|+.++.... .. -..+...
T Consensus 7 G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~------------~~-~~~~~~~ 73 (309)
T PRK00005 7 GTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEK------------LR-DPEFLAE 73 (309)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCC------------CC-CHHHHHH
Confidence 44456777888888878987755543222111 011233444432111 00 1234566
Q ss_pred HhhCCCcEEEecCch
Q psy8013 81 LLREEISIVHGHSAF 95 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~ 95 (252)
++..+||++.+..+.
T Consensus 74 l~~~~~Dliv~~~~~ 88 (309)
T PRK00005 74 LAALNADVIVVVAYG 88 (309)
T ss_pred HHhcCcCEEEEehhh
Confidence 788899999887654
No 284
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=49.38 E-value=29 Score=21.13 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHCC---cEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRG---HKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G---~~V~v~~~~ 37 (252)
|.+.+...|++.|.+.| ++|.+++..
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r 34 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSR 34 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEES
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccC
Confidence 56677889999999999 999988654
No 285
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=49.34 E-value=96 Score=24.54 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCC
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKD 40 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 40 (252)
|-.-.+..|++.|.++|..+.+++..+.+
T Consensus 61 GKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 61 GKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 33467899999999999999999998766
No 286
>PRK07308 flavodoxin; Validated
Probab=49.25 E-value=28 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=26.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|....|.++..+..+++.|.+.|+++.+.-..
T Consensus 8 Y~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~ 39 (146)
T PRK07308 8 YASMTGNTEEIADIVADKLRELGHDVDVDECT 39 (146)
T ss_pred EECCCchHHHHHHHHHHHHHhCCCceEEEecc
Confidence 44567999999999999999999998876543
No 287
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=49.22 E-value=23 Score=25.21 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
|..+..-..++++..++||+|+-++.+.
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeCh
Confidence 4445556678899999999999999864
No 288
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=49.13 E-value=40 Score=22.23 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=25.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCcEE-EEEecc
Q psy8013 7 YPNVGGVEEHIFNLSQCLLQRGHKV-IVLTHS 37 (252)
Q Consensus 7 ~P~~GG~~~~~~~l~~~L~~~G~~V-~v~~~~ 37 (252)
+|..+-..+..+++++.+.+.||+| .|+...
T Consensus 9 ~P~~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 40 (127)
T TIGR03012 9 PPYGTQAASSAYQFAQALLAKGHEIVRVFFYQ 40 (127)
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCcEEEEEEeh
Confidence 5665557788999999999999995 777765
No 289
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=48.79 E-value=23 Score=24.39 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|.+.+-..+++.|.+.||+|+++-..
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred chHHHHHHHHHHHHhcCCeEEeeccc
Confidence 56677888999999999999987644
No 290
>PRK06756 flavodoxin; Provisional
Probab=48.27 E-value=32 Score=23.21 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=26.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|....|..+..+..+++.|.+.|++|.++-..
T Consensus 8 Y~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~ 39 (148)
T PRK06756 8 FASMSGNTEEMADHIAGVIRETENEIEVIDIM 39 (148)
T ss_pred EECCCchHHHHHHHHHHHHhhcCCeEEEeehh
Confidence 45567999999999999999999998877543
No 291
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=48.24 E-value=1.5e+02 Score=24.21 Aligned_cols=81 Identities=10% Similarity=-0.036 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecCchh
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFS 96 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~~ 96 (252)
...|+..+.+.|+.+++++.......... . ....+. ........+.++.++.++|+|+......
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~-----------~~~~d~~~l~~~~~~~~id~vi~~~e~~ 75 (423)
T TIGR00877 12 EHALAWKLAQSPLVKYVYVAPGNAGTARL--A---KNKNVA-----------ISITDIEALVEFAKKKKIDLAVIGPEAP 75 (423)
T ss_pred HHHHHHHHHhCCCccEEEEECCCHHHhhh--c---cccccc-----------CCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 67788888888887777765422111100 0 000000 0112344677788889999998654332
Q ss_pred HHHHHHHHHHHhcCCcEE
Q psy8013 97 ALAHETMMIARLLGLKTV 114 (252)
Q Consensus 97 ~~~~~~~~~~~~~~~p~v 114 (252)
... .........++|++
T Consensus 76 l~~-~~~~~l~~~gi~~~ 92 (423)
T TIGR00877 76 LVL-GLVDALEEAGIPVF 92 (423)
T ss_pred HHH-HHHHHHHHCCCeEE
Confidence 111 12233455677754
No 292
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=48.10 E-value=1.1e+02 Score=24.03 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHhhccCCCCCChhhhHHHHHhcCChHHHHHHH
Q psy8013 190 ETLIAGIESAISDLKNGRAISPFKCHETVKSLYNWVDVSERT 231 (252)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~a~~~ 231 (252)
+++++++...++... ......++.. +.|+|++..+++
T Consensus 314 ~~la~~i~~l~~~~~----~~~~~~~~~~-~~~~~~~~~~~~ 350 (351)
T cd03804 314 ESLAAAVERFEKNED----FDPQAIRAHA-ERFSESRFREKI 350 (351)
T ss_pred HHHHHHHHHHHhCcc----cCHHHHHHHH-HhcCHHHHHHHh
Confidence 445666665554432 1344455444 569999988765
No 293
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=48.08 E-value=90 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 14 EEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
..+...|++.|.++|++|......
T Consensus 19 ~~f~~~LaRa~e~RGf~v~~a~~~ 42 (182)
T COG4567 19 TPFLRTLARAMERRGFAVVTAESV 42 (182)
T ss_pred hHHHHHHHHHHhccCceeEeeccH
Confidence 568899999999999999988764
No 294
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=48.05 E-value=1.1e+02 Score=22.61 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecCch
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAF 95 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~ 95 (252)
.+...+.+|.++|++|+.+......... .....|.+.+++.+++-|++..+.
T Consensus 50 aMRhfa~~L~~~G~~V~Y~~~~~~~~~~----------------------------s~~~~L~~~~~~~~~~~~~~~~P~ 101 (224)
T PF04244_consen 50 AMRHFADELRAKGFRVHYIELDDPENTQ----------------------------SFEDALARALKQHGIDRLHVMEPG 101 (224)
T ss_dssp HHHHHHHHHHHTT--EEEE-TT-TT--S----------------------------SHHHHHHHHHHHH----EEEE--S
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCccccc----------------------------cHHHHHHHHHHHcCCCEEEEECCC
Confidence 3566788999999999998876321110 123457788888899999888865
Q ss_pred hHHH-HHHHHHHHhcCCcEEEEecC
Q psy8013 96 SALA-HETMMIARLLGLKTVFTDHS 119 (252)
Q Consensus 96 ~~~~-~~~~~~~~~~~~p~v~~~h~ 119 (252)
.... .....++...++++.+.--.
T Consensus 102 d~~l~~~l~~~~~~~~i~~~~~~~~ 126 (224)
T PF04244_consen 102 DYRLEQRLESLAQQLGIPLEVLEDP 126 (224)
T ss_dssp -HHHHHHHHH----SSS-EEEE--T
T ss_pred CHHHHHHHHhhhcccCCceEEeCCC
Confidence 5322 11223345568887554433
No 295
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=48.05 E-value=42 Score=22.64 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
..|..+.+.+||..|++.|+.|-++-...
T Consensus 11 g~G~t~~a~~lA~~la~~~~~Vllid~~~ 39 (157)
T PF13614_consen 11 GVGKTTLALNLAAALARKGKKVLLIDFDF 39 (157)
T ss_dssp TSSHHHHHHHHHHHHHHTTT-EEEEE--S
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 45888999999999999999977776653
No 296
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=47.79 E-value=94 Score=23.99 Aligned_cols=97 Identities=9% Similarity=-0.008 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHHHC--CcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 12 GVEEHIFNLSQCLLQR--GHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
|.++....|....... +++|.++....++... .....|+.++.++..... .-..-..+.+.++..+||++
T Consensus 98 g~gsnl~al~~~~~~~~~~~~i~~visn~~~~~~-lA~~~gIp~~~~~~~~~~-------~~~~~~~~~~~l~~~~~Dli 169 (286)
T PRK06027 98 KEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRS-LVERFGIPFHHVPVTKET-------KAEAEARLLELIDEYQPDLV 169 (286)
T ss_pred CCCCCHHHHHHHHHcCCCCcEEEEEEEcChhHHH-HHHHhCCCEEEeccCccc-------cchhHHHHHHHHHHhCCCEE
Confidence 3355666777666543 4677766655332221 234556777666543210 00122356777888999999
Q ss_pred EecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 90 HGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 90 h~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
.+.++...+. ..++.. ..- -++-+|..
T Consensus 170 vlagy~~il~--~~~l~~-~~~-~iiNiHpS 196 (286)
T PRK06027 170 VLARYMQILS--PDFVAR-FPG-RIINIHHS 196 (286)
T ss_pred EEecchhhcC--HHHHhh-ccC-CceecCcc
Confidence 9988655443 222222 222 25677764
No 297
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=47.68 E-value=32 Score=22.48 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHCCcEEEEEecc
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.+..|+.+-.++||+|.++...
T Consensus 19 TT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 19 TTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp HHHHHHHHHHHTT-EEEEE-GG
T ss_pred hHHHHHHHHHHCCCEEEEEEcC
Confidence 3566888889999999999886
No 298
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=47.61 E-value=22 Score=26.98 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
.||.+..-..+++.|.+.|++|.+++...
T Consensus 5 tGatG~iG~~vv~~L~~~g~~V~~~~R~~ 33 (285)
T TIGR03649 5 TGGTGKTASRIARLLQAASVPFLVASRSS 33 (285)
T ss_pred EcCCChHHHHHHHHHHhCCCcEEEEeCCC
Confidence 36666777788899999999999998764
No 299
>PRK09072 short chain dehydrogenase; Provisional
Probab=47.53 E-value=26 Score=26.24 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=23.4
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.+++..
T Consensus 11 tG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 11 TGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 4777777788999999999999988764
No 300
>PRK08105 flavodoxin; Provisional
Probab=47.52 E-value=28 Score=23.68 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=27.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|-...|-++.++..+++.|.+.|++|.++...
T Consensus 8 YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~ 39 (149)
T PRK08105 8 VGTVYGNALLVAEEAEAILTAQGHEVTLFEDP 39 (149)
T ss_pred EEcCchHHHHHHHHHHHHHHhCCCceEEechh
Confidence 55668999999999999999999999987754
No 301
>PRK05568 flavodoxin; Provisional
Probab=47.40 E-value=37 Score=22.58 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=27.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|....|..+..+..+++.+.+.|++|.++-..
T Consensus 8 Y~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~ 39 (142)
T PRK05568 8 YWSGTGNTEAMANLIAEGAKENGAEVKLLNVS 39 (142)
T ss_pred EECCCchHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45567999999999999999999999988654
No 302
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=47.28 E-value=88 Score=21.18 Aligned_cols=90 Identities=8% Similarity=0.050 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHC--CcEEEEEeccCCCCcceeeeeC-CeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 15 EHIFNLSQCLLQR--GHKVIVLTHSYKDRVGIRYMTN-GLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 15 ~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
..+.++++.|.+. |+.+ ++.... ....... |+.+..+-..+. .....+...++..++|+|..
T Consensus 17 ~~l~~~a~~l~~ll~Gf~l--~AT~gT---a~~L~~~~Gi~v~~vi~~~~----------gg~~~i~~~I~~g~i~lVIn 81 (142)
T PRK05234 17 DDLVAWVKAHKDLLEQHEL--YATGTT---GGLIQEATGLDVTRLLSGPL----------GGDQQIGALIAEGKIDMLIF 81 (142)
T ss_pred HHHHHHHHHHHHHhcCCEE--EEeChH---HHHHHhccCCeeEEEEcCCC----------CCchhHHHHHHcCceeEEEE
Confidence 3467899999999 9984 343311 1111234 666655511110 11245778889999998765
Q ss_pred cC--c--hh--HHHHHHHHHHHhcCCcEEEEecC
Q psy8013 92 HS--A--FS--ALAHETMMIARLLGLKTVFTDHS 119 (252)
Q Consensus 92 ~~--~--~~--~~~~~~~~~~~~~~~p~v~~~h~ 119 (252)
.. . .+ .-.......|-..++|++.+.-+
T Consensus 82 t~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~t 115 (142)
T PRK05234 82 FRDPLTAQPHDPDVKALLRLADVWNIPVATNRAT 115 (142)
T ss_pred ecCCCCCCcccchHHHHHHHHHHcCCCEEcCHHH
Confidence 42 1 11 01223566677789998877654
No 303
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=47.23 E-value=27 Score=25.82 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=24.5
Q ss_pred CCCcHH--HHHHHHHHHHHHCCcEEEEEeccCC
Q psy8013 9 NVGGVE--EHIFNLSQCLLQRGHKVIVLTHSYK 39 (252)
Q Consensus 9 ~~GG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 39 (252)
..||++ +.+.+|+..|+++|..|.++=.+..
T Consensus 9 ~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ 41 (231)
T PRK13849 9 FKGGAGKTTALMGLCAALASDGKRVALFEADEN 41 (231)
T ss_pred CCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 467776 5678889999999999988877643
No 304
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=47.17 E-value=76 Score=20.46 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHC--CcEEEEEeccCCCCcceeeee-CCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEec
Q psy8013 16 HIFNLSQCLLQR--GHKVIVLTHSYKDRVGIRYMT-NGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGH 92 (252)
Q Consensus 16 ~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~ 92 (252)
-+..+++.|.+. |+++. .+.. ....... .|+.+..++..+.. ....+...++..++|.|...
T Consensus 13 ~~~~~a~~~~~ll~Gf~i~-AT~g----Ta~~L~~~~Gi~v~~vk~~~~~----------g~~~i~~~i~~g~i~~VInt 77 (115)
T cd01422 13 DLVEFVKQHQELLSRHRLV-ATGT----TGLLIQEATGLTVNRMKSGPLG----------GDQQIGALIAEGEIDAVIFF 77 (115)
T ss_pred HHHHHHHHHHHHhcCCEEE-Eech----HHHHHHHhhCCcEEEEecCCCC----------chhHHHHHHHcCceeEEEEc
Confidence 456889999998 99874 2221 1111123 57777666221111 12457788899999987555
Q ss_pred Cc----hh--HHHHHHHHHHHhcCCcEEEEec
Q psy8013 93 SA----FS--ALAHETMMIARLLGLKTVFTDH 118 (252)
Q Consensus 93 ~~----~~--~~~~~~~~~~~~~~~p~v~~~h 118 (252)
.. .+ .-.......+-..++|++.+.-
T Consensus 78 ~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Ttl~ 109 (115)
T cd01422 78 RDPLTAQPHEPDVKALLRLCDVYNIPLATNRS 109 (115)
T ss_pred CCCCCCCcccccHHHHHHHHHHcCCCEEEcHH
Confidence 32 11 1133355667778999887653
No 305
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=46.66 E-value=67 Score=24.37 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHHHH--CCcEEEEEeccCCCCcce--eeeeCCe-EEEEeecccccCCCcccccccchHHHHHHHhhCCC
Q psy8013 12 GVEEHIFNLSQCLLQ--RGHKVIVLTHSYKDRVGI--RYMTNGL-KVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEI 86 (252)
Q Consensus 12 G~~~~~~~l~~~L~~--~G~~V~v~~~~~~~~~~~--~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (252)
-.-.+..+.|-.|.+ .|.+|++++...+..... ....-|. +.+.+...... -...+.....|...+++.++
T Consensus 37 ~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLAmGaDraili~d~~~~----~~d~~~ta~~Laa~~~~~~~ 112 (260)
T COG2086 37 PFDLNAVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALAMGADRAILITDRAFA----GADPLATAKALAAAVKKIGP 112 (260)
T ss_pred hhhHHHHHHHHHhhccCCCceEEEEEecchhhHHHHHHHHhcCCCeEEEEeccccc----CccHHHHHHHHHHHHHhcCC
Confidence 345667888999988 467899999874322110 1111121 11222211111 11223455678888999999
Q ss_pred cEEEecCch--hHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 87 SIVHGHSAF--SALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 87 Dvvh~~~~~--~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
|+|.+-... ...+..+..++..+|.|.+...-..
T Consensus 113 ~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i 148 (260)
T COG2086 113 DLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKI 148 (260)
T ss_pred CEEEEecccccCCccchHHHHHHHhCCceeeeEEEE
Confidence 988776421 1122236778888999988766554
No 306
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=46.38 E-value=64 Score=26.34 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceeee----eCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYM----TNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
+...+++.|.+.|.+|..+............. ..+..++ .-.....+.+.+++.+||++..
T Consensus 298 ~~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~---------------~~~~~~e~~~~i~~~~pDl~ig 362 (410)
T cd01968 298 KSWSLVSALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIV---------------DDANPRELKKLLKEKKADLLVA 362 (410)
T ss_pred hHHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEE---------------eCCCHHHHHHHHhhcCCCEEEE
Confidence 45778888888898887775432211110000 0000000 0012345667788889999988
Q ss_pred cCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 92 HSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
+..- ..+++..++|++-
T Consensus 363 ~s~~-------~~~a~~~gip~~~ 379 (410)
T cd01968 363 GGKE-------RYLALKLGIPFCD 379 (410)
T ss_pred CCcc-------hhhHHhcCCCEEE
Confidence 8532 2346668999874
No 307
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=46.15 E-value=28 Score=26.68 Aligned_cols=29 Identities=31% Similarity=0.249 Sum_probs=24.5
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
.||.+..-..|++.|.++||+|..+....
T Consensus 6 tG~tGfiG~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 6 TGGAGFIGSHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred EcCcccHHHHHHHHHHhCCCeEEEEeCCC
Confidence 36677777899999999999999999753
No 308
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=45.80 E-value=33 Score=26.01 Aligned_cols=29 Identities=38% Similarity=0.393 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
.||.+..-..+++.|.+.|++|+.+....
T Consensus 4 tGatG~iG~~l~~~L~~~g~~V~~~~r~~ 32 (292)
T TIGR01777 4 TGGTGFIGRALTQRLTKDGHEVTILTRSP 32 (292)
T ss_pred EcccchhhHHHHHHHHHcCCEEEEEeCCC
Confidence 47777778889999999999999988753
No 309
>PRK06703 flavodoxin; Provisional
Probab=45.74 E-value=34 Score=23.15 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=27.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|....|-.+..+..+++.|.+.|++|.+.-..
T Consensus 8 Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 8 YASMSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred EECCCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 45567999999999999999999999887654
No 310
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=45.44 E-value=41 Score=24.97 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=25.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
.||=.+.+..|+++|..+|..|.+-|+..
T Consensus 7 ~gGKTtl~~~l~~~~~~~g~~v~~TTTT~ 35 (232)
T TIGR03172 7 AGGKTSTMFWLAAEYRKEGYRVLVTTTTR 35 (232)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEECCcc
Confidence 38999999999999999999998888753
No 311
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=45.43 E-value=95 Score=24.48 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
.||.+..-..+++.|.++|+++.++..
T Consensus 7 tGatGfIG~~l~~~L~~~g~~~v~~~~ 33 (355)
T PRK10217 7 TGGAGFIGSALVRYIINETSDAVVVVD 33 (355)
T ss_pred EcCCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 467777778899999999998665544
No 312
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=45.26 E-value=37 Score=25.22 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHC--CcEEEEEeccC
Q psy8013 12 GVEEHIFNLSQCLLQR--GHKVIVLTHSY 38 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~--G~~V~v~~~~~ 38 (252)
+.-..+.++++.|.+. |++|+++.+..
T Consensus 11 ~~~~~~~~l~~~L~~~~~g~~V~vv~T~~ 39 (234)
T TIGR02700 11 HLLVESFQVMKELKREIEELRVSTFVSRA 39 (234)
T ss_pred HhHHHHHHHHHHHHhhcCCCeEEEEEChh
Confidence 3446899999999998 99999998753
No 313
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=45.20 E-value=73 Score=22.93 Aligned_cols=100 Identities=12% Similarity=0.098 Sum_probs=56.4
Q ss_pred CcHHHHHHHHHHHHHHCC--cEEEEEeccCCCCcc-eeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCc
Q psy8013 11 GGVEEHIFNLSQCLLQRG--HKVIVLTHSYKDRVG-IRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEIS 87 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~D 87 (252)
.|.++....++.+..... .+|..+..+..+... ......|+....+...... .--.+-..+...++..+||
T Consensus 8 SG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~------~r~~~d~~l~~~l~~~~~d 81 (200)
T COG0299 8 SGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEFP------SREAFDRALVEALDEYGPD 81 (200)
T ss_pred eCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccCC------CHHHHHHHHHHHHHhcCCC
Confidence 455566777888876332 456655554322221 1224455655444433221 1112234677888999999
Q ss_pred EEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 88 IVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 88 vvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
+|.+-+++..++ ..++.+..+ -|..+|-.
T Consensus 82 lvvLAGyMrIL~--~~fl~~~~g--rIlNIHPS 110 (200)
T COG0299 82 LVVLAGYMRILG--PEFLSRFEG--RILNIHPS 110 (200)
T ss_pred EEEEcchHHHcC--HHHHHHhhc--ceEecCcc
Confidence 999999877665 444544444 35666754
No 314
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=45.15 E-value=71 Score=19.53 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=25.7
Q ss_pred HHHHHhhCCCcEEEecCchhHH---------HHHHHHHHHhcCCcEEEEecC
Q psy8013 77 VRHILLREEISIVHGHSAFSAL---------AHETMMIARLLGLKTVFTDHS 119 (252)
Q Consensus 77 l~~~~~~~~~Dvvh~~~~~~~~---------~~~~~~~~~~~~~p~v~~~h~ 119 (252)
+..+.....+|.||..+-.... --++...-...++|+|...|.
T Consensus 48 ~k~lk~~egaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv~gTH~ 99 (101)
T COG5561 48 IKQLKGKEGAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVVMGTHF 99 (101)
T ss_pred HHHHhhccccceeeeeeeeeccCCCCCccCHHHHHHHHHHHhCCcEEeecce
Confidence 3344445569999988632111 112344456679999988775
No 315
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=44.91 E-value=52 Score=26.25 Aligned_cols=98 Identities=17% Similarity=0.069 Sum_probs=43.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccc---cccchHHHHHHHhhCCC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPT---MVCSIPLVRHILLREEI 86 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 86 (252)
.||.-.....+++...+.|.+|.++..+.-.... .-+.+..+..+..... .++. ....+..+.+.+. .++
T Consensus 20 GGG~p~~~~~~~~~~l~~~~~v~lv~~del~dd~-----~v~~v~~~GsP~v~~E-~lp~g~e~~~a~~~le~~~g-~~~ 92 (353)
T PF06032_consen 20 GGGDPYIGRLMAEQALREGGPVRLVDPDELPDDD-----LVVPVGMMGSPTVSVE-KLPSGDEALRAVEALEKYLG-RKI 92 (353)
T ss_dssp -SS-HHHHHHHHTT-SBTTS-EEEE-GGG--SSE------EEEEEEEE-HHHTT--SS-HHHHHHHHHHHHHHHTT---E
T ss_pred CCccHHHHHHHHHHHHhCCCCeEEEEHhHcCCCC-----cEeEEEEeCCChHHhc-cCCCchHHHHHHHHHHHhhC-CCc
Confidence 4666677777788888888999999986321111 0122222222211111 1111 1122223333332 358
Q ss_pred cEEEecCchhHHHHHHHHHHHhcCCcEE
Q psy8013 87 SIVHGHSAFSALAHETMMIARLLGLKTV 114 (252)
Q Consensus 87 Dvvh~~~~~~~~~~~~~~~~~~~~~p~v 114 (252)
+-|.....-..-....+..+...|+|+|
T Consensus 93 ~av~~~EiGG~N~~~pl~~Aa~~GlPvv 120 (353)
T PF06032_consen 93 DAVIPIEIGGSNGLNPLLAAAQLGLPVV 120 (353)
T ss_dssp EEEE-SSSSCCHHHHHHHHHHHHT-EEE
T ss_pred cEEeehhcCccchhHHHHHHHHhCCCEE
Confidence 8887775433233336677778899965
No 316
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=44.89 E-value=40 Score=22.24 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=26.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|....|..+..+..+++.+.+.|++|.++-..
T Consensus 5 y~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~ 36 (140)
T TIGR01753 5 YASMTGNTEEMANIIAEGLKEAGAEVDLLEVA 36 (140)
T ss_pred EECCCcHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 44457999999999999999999999887664
No 317
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=44.87 E-value=91 Score=24.01 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=21.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEe
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLT 35 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~ 35 (252)
.||.+..-..+++.|.++|++|.++.
T Consensus 5 ~GatG~iG~~l~~~l~~~g~~V~~~~ 30 (328)
T TIGR01179 5 TGGAGYIGSHTVRQLLESGHEVVVLD 30 (328)
T ss_pred eCCCCHHHHHHHHHHHhCCCeEEEEe
Confidence 36677777889999999999998764
No 318
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=44.69 E-value=1.1e+02 Score=23.59 Aligned_cols=79 Identities=6% Similarity=-0.022 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHHHC--CcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 12 GVEEHIFNLSQCLLQR--GHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
|.+.-...|..+.... ..+|.++..+.++. .......|+.++.++..... .-..-..+.+.+++.++|++
T Consensus 102 g~g~nl~al~~~~~~~~l~~~i~~visn~~~~-~~~A~~~gIp~~~~~~~~~~-------~~~~~~~~~~~l~~~~~Dli 173 (289)
T PRK13010 102 KFDHCLNDLLYRWRMGELDMDIVGIISNHPDL-QPLAVQHDIPFHHLPVTPDT-------KAQQEAQILDLIETSGAELV 173 (289)
T ss_pred CCCccHHHHHHHHHCCCCCcEEEEEEECChhH-HHHHHHcCCCEEEeCCCccc-------ccchHHHHHHHHHHhCCCEE
Confidence 4445556666665443 24555555443222 12223456666665543210 00112356777889999999
Q ss_pred EecCchhHH
Q psy8013 90 HGHSAFSAL 98 (252)
Q Consensus 90 h~~~~~~~~ 98 (252)
.+.++...+
T Consensus 174 vlagym~il 182 (289)
T PRK13010 174 VLARYMQVL 182 (289)
T ss_pred EEehhhhhC
Confidence 888765544
No 319
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=44.31 E-value=26 Score=28.57 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.-+..|+++|.++||+|+++|..
T Consensus 16 ~p~~aL~~eL~~~gheV~~~~~~ 38 (406)
T COG1819 16 NPCLALGKELRRRGHEVVFASTG 38 (406)
T ss_pred cchHHHHHHHHhcCCeEEEEeCH
Confidence 34678999999999999999985
No 320
>KOG3339|consensus
Probab=44.00 E-value=89 Score=22.33 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce-------eeeeCCeEEEEeecccccCCCcccccccchHHHH---H
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI-------RYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVR---H 79 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~---~ 79 (252)
.||=..=+.+|.+.|.+.=-.-+.+....++-... .......+.+.+|.....+.+.....+..+..+. .
T Consensus 47 SGGHT~EMlrLl~~l~~~y~~r~yI~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv~Tti~all~s~~ 126 (211)
T KOG3339|consen 47 SGGHTGEMLRLLEALQDLYSPRSYIAADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSVFTTIWALLQSFV 126 (211)
T ss_pred CCCcHHHHHHHHHHHHhhcCceEEEEecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhHHHHHHHHHHHhe
Confidence 56766667777788866522222333322211110 0111122333344443333332222222222222 2
Q ss_pred HHhhCCCcEEEecCchh
Q psy8013 80 ILLREEISIVHGHSAFS 96 (252)
Q Consensus 80 ~~~~~~~Dvvh~~~~~~ 96 (252)
++-+.+||+|.++++..
T Consensus 127 lv~RirPdlil~NGPGT 143 (211)
T KOG3339|consen 127 LVWRIRPDLILCNGPGT 143 (211)
T ss_pred EEEecCCCEEEECCCCc
Confidence 22356899999999754
No 321
>PRK09004 FMN-binding protein MioC; Provisional
Probab=43.96 E-value=35 Score=23.09 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=26.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
|-...|-++..+..+++.+.+.|++|.++..
T Consensus 8 ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 8 SGSTLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred EEcCchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 5566889999999999999999999998654
No 322
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=43.91 E-value=32 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=19.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
.||++ ..+++.|.++|++|+++..
T Consensus 24 SGgIG---~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 24 TGHLG---KIITETFLSAGHEVTLVTT 47 (227)
T ss_pred ccHHH---HHHHHHHHHCCCEEEEEcC
Confidence 46665 4589999999999998763
No 323
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=43.70 E-value=27 Score=22.96 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHCCcEEEEEecc
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.+.++.+.|.+.|++|.++...
T Consensus 15 ~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 15 KAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp GHHHHHHHHHTTTSEEEEEESH
T ss_pred HHHHHHHHHhhCCCEEEEEECC
Confidence 3789999999999999998875
No 324
>PLN02583 cinnamoyl-CoA reductase
Probab=43.52 E-value=30 Score=26.63 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=23.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++||+|.++...
T Consensus 12 TGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 12 MDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred ECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4777777788999999999999887753
No 325
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.43 E-value=31 Score=25.44 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 11 tGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 11 TGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4666666778999999999998888765
No 326
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=43.31 E-value=39 Score=25.13 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=22.4
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.+.||+|+.++..
T Consensus 23 tGasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 23 AGATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred ECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 4666667788999999999999887754
No 327
>PRK07577 short chain dehydrogenase; Provisional
Probab=43.29 E-value=33 Score=24.96 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
.||....-..+++.|.++|++|.++....
T Consensus 9 tG~s~~iG~~ia~~l~~~G~~v~~~~r~~ 37 (234)
T PRK07577 9 TGATKGIGLALSLRLANLGHQVIGIARSA 37 (234)
T ss_pred ECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46666677789999999999998887653
No 328
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=43.28 E-value=88 Score=24.69 Aligned_cols=33 Identities=9% Similarity=-0.023 Sum_probs=24.3
Q ss_pred CCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecC
Q psy8013 85 EISIVHGHSAFSALAHETMMIARLLGLKTVFTDHS 119 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 119 (252)
.||+|.+..+..... +..=|...|+|+|..+-.
T Consensus 152 ~Pd~viv~d~~~e~~--AI~EA~kl~IPvIaivDT 184 (326)
T PRK12311 152 LPDLLFVIDTNKEDI--AIQEAQRLGIPVAAIVDT 184 (326)
T ss_pred CCCEEEEeCCccchH--HHHHHHHcCCCEEEEeeC
Confidence 699998888654333 666788899999875543
No 329
>PRK07454 short chain dehydrogenase; Provisional
Probab=43.06 E-value=34 Score=25.14 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=23.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 12 tG~sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 12 TGASSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4666777788999999999998888764
No 330
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=43.05 E-value=59 Score=25.35 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCCCCccee-----------eeeCCeEEEEeecccccCCCcccccccchHHHHHH
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIR-----------YMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHI 80 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (252)
|...+.....+.|.+.||+|.-+.+..+.+.... ....|+.++.- ..+.. ..+...
T Consensus 8 GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP------------~~l~~-~e~~~~ 74 (307)
T COG0223 8 GTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQP------------EKLND-PEFLEE 74 (307)
T ss_pred cCchhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceecc------------ccCCc-HHHHHH
Confidence 3444556667888889999887666544333210 01122222111 00111 146667
Q ss_pred HhhCCCcEEEecCchhHHHHHHHHHHHhcCCcE--EEEecCCC-CCCchhhHHHHHHHHHhhcCCCEEEEechh
Q psy8013 81 LLREEISIVHGHSAFSALAHETMMIARLLGLKT--VFTDHSLF-GFADSSAIVTNKCLEISLAGCNHCICVSHI 151 (252)
Q Consensus 81 ~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~--v~~~h~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~ 151 (252)
++..+||++.+..+...+. .....+|- ++.+|... +...-... +.+.+-+-|....+|-.
T Consensus 75 l~~l~~D~ivvvayG~ilp------~~iL~~~~~G~iNvH~SLLPr~RGaAP-----Iq~aI~~Gd~~TGvTim 137 (307)
T COG0223 75 LAALDPDLIVVVAYGQILP------KEILDLPPYGCINLHPSLLPRYRGAAP-----IQWAILNGDTETGVTIM 137 (307)
T ss_pred HhccCCCEEEEEehhhhCC------HHHHhcCcCCeEEecCccCccccCccH-----HHHHHHcCCcccceEEE
Confidence 7778999998887544332 22234443 67888753 22111111 34555555555555543
No 331
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=43.05 E-value=26 Score=29.04 Aligned_cols=98 Identities=9% Similarity=-0.018 Sum_probs=50.8
Q ss_pred HHHhhcCCCEEEEechhhhhhHH----HhhccCCCceEEccC--CccCCCCCCC-ccccccchhHHHHHHHHHhhccCCC
Q psy8013 135 LEISLAGCNHCICVSHIGKENTV----LRARVNHYNVSVIPN--AVDTTVFVPD-VSRRSHNETLIAGIESAISDLKNGR 207 (252)
Q Consensus 135 ~~~~~~~~d~vi~~S~~~~~~~~----~~~~~~~~~i~vI~n--gvd~~~f~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (252)
+..+++.+|.++..|...--.+. ...+.+..-+.|+.. |.-. ..... -.++...++++++|.+++.......
T Consensus 349 l~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~-~l~~gllVnP~d~~~lA~aI~~aL~~~~~er 427 (456)
T TIGR02400 349 LMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ-ELNGALLVNPYDIDGMADAIARALTMPLEER 427 (456)
T ss_pred HHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH-HhCCcEEECCCCHHHHHHHHHHHHcCCHHHH
Confidence 34567789999988863221111 223333333344444 2211 11100 1112223678888888877544322
Q ss_pred CCChhhhHHHHHhcCChHHHHHHHHHH
Q psy8013 208 AISPFKCHETVKSLYNWVDVSERTEIV 234 (252)
Q Consensus 208 ~~~~~~~~~~~~~~~sw~~~a~~~~~~ 234 (252)
.......++.+. .||+...++++.+-
T Consensus 428 ~~r~~~~~~~v~-~~~~~~W~~~~l~~ 453 (456)
T TIGR02400 428 EERHRAMMDKLR-KNDVQRWREDFLSD 453 (456)
T ss_pred HHHHHHHHHHHh-hCCHHHHHHHHHHH
Confidence 123334455654 49999999988753
No 332
>PRK06138 short chain dehydrogenase; Provisional
Probab=42.88 E-value=31 Score=25.43 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.+++..
T Consensus 11 tG~sg~iG~~la~~l~~~G~~v~~~~r~ 38 (252)
T PRK06138 11 TGAGSGIGRATAKLFAREGARVVVADRD 38 (252)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEecCC
Confidence 4777777888999999999998887754
No 333
>PLN00198 anthocyanidin reductase; Provisional
Probab=42.75 E-value=45 Score=26.10 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..|++.|.++|++|.+++..
T Consensus 15 tG~~GfIG~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 15 IGGTGFLASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred ECCchHHHHHHHHHHHHCCCEEEEEECC
Confidence 5788888889999999999999877654
No 334
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=42.71 E-value=53 Score=19.52 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.3
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEe
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLT 35 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~ 35 (252)
-|-.+.+.+++..|++.|++|.++-
T Consensus 10 ~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 10 VGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 3677889999999999999987776
No 335
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=42.66 E-value=61 Score=21.73 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 13 VEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
..-.+..++..|.++|++|+|....
T Consensus 12 q~p~alYl~~~Lk~~G~~v~Va~np 36 (139)
T PF09001_consen 12 QTPSALYLSYKLKKKGFEVVVAGNP 36 (139)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-H
T ss_pred hhHHHHHHHHHHHhcCCeEEEecCH
Confidence 3456788999999999999998763
No 336
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=42.26 E-value=26 Score=25.63 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=23.7
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.|-.++..+|++.|.+.+|+|..++.+
T Consensus 12 sGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 12 SGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred CCchHHHHHHHHHHHHhhhhccccchh
Confidence 677889999999999999998887764
No 337
>PRK06101 short chain dehydrogenase; Provisional
Probab=42.06 E-value=35 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
||....-..+++.|.++|++|.++..+
T Consensus 8 Gas~giG~~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 8 GATSGIGKQLALDYAKQGWQVIACGRN 34 (240)
T ss_pred cCCcHHHHHHHHHHHhCCCEEEEEECC
Confidence 555556678999999999998887654
No 338
>PRK07102 short chain dehydrogenase; Provisional
Probab=42.05 E-value=35 Score=25.11 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.+.|++|.++...
T Consensus 7 tGas~giG~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 7 IGATSDIARACARRYAAAGARLYLAARD 34 (243)
T ss_pred EcCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4666667788999999999998888654
No 339
>PRK05569 flavodoxin; Provisional
Probab=42.05 E-value=48 Score=22.05 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=25.0
Q ss_pred CCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
...|..+..+..+++.+.+.|.+|.+.-..
T Consensus 10 S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~ 39 (141)
T PRK05569 10 SCGGNVEVLANTIADGAKEAGAEVTIKHVA 39 (141)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 346999999999999999899998877654
No 340
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=42.03 E-value=92 Score=19.91 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=24.8
Q ss_pred HHHHHhhCCCcEEEecCch---------hHHHHHHHHHHHhcCCcEEEEec
Q psy8013 77 VRHILLREEISIVHGHSAF---------SALAHETMMIARLLGLKTVFTDH 118 (252)
Q Consensus 77 l~~~~~~~~~Dvvh~~~~~---------~~~~~~~~~~~~~~~~p~v~~~h 118 (252)
..+.+++.+.|+||+.+-. +.+..+...+....|+++|..-|
T Consensus 57 ~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~GTH 107 (107)
T PF08821_consen 57 RIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVEGTH 107 (107)
T ss_pred HHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEeeecC
Confidence 3344458899999998621 11222344455555888876554
No 341
>PRK05920 aromatic acid decarboxylase; Validated
Probab=42.01 E-value=44 Score=24.25 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
....++++.|.+.|++|+++.+..
T Consensus 17 ~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 17 IYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEEEChh
Confidence 467889999999999999998753
No 342
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=41.98 E-value=26 Score=27.01 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=36.9
Q ss_pred CCcHHHHHHHHHHHHHHCCc-EEEEEeccCCCCcc--ee----eeeCCeEEEEeecccccCCCcccccccchHHHHHHHh
Q psy8013 10 VGGVEEHIFNLSQCLLQRGH-KVIVLTHSYKDRVG--IR----YMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILL 82 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~--~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (252)
.||.+..-.+|++.|.+.|- .+.++..+...... .. ....+++....+.. ........+.++++
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vi---------gDvrd~~~l~~~~~ 74 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVI---------GDVRDKERLNRIFE 74 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--C---------TSCCHHHHHHHHTT
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCcee---------ecccCHHHHHHHHh
Confidence 47888889999999999874 45555543211100 00 01122333222221 22344567888889
Q ss_pred hCCCcEE-Eec
Q psy8013 83 REEISIV-HGH 92 (252)
Q Consensus 83 ~~~~Dvv-h~~ 92 (252)
+.+||+| |+-
T Consensus 75 ~~~pdiVfHaA 85 (293)
T PF02719_consen 75 EYKPDIVFHAA 85 (293)
T ss_dssp --T-SEEEE--
T ss_pred hcCCCEEEECh
Confidence 9999986 443
No 343
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.96 E-value=46 Score=25.83 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
|.+.+-..++..|.+.||+|+++..+.
T Consensus 11 G~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 11 GAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 667778889999999999999887753
No 344
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=41.40 E-value=47 Score=27.19 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCcEEEEEeccCCCC-cc--eeeee--CCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYKDR-VG--IRYMT--NGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~~~-~~--~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
...+++.|.+.|.+|..++...... .. ..... .++.+ .....+......+++.+||++..
T Consensus 292 ~~~la~~L~elGmevv~~~t~~~~~~~~~~~~~~l~~~~~~v---------------~~~~~~~~~~~~~~~~~pDl~Ig 356 (416)
T cd01980 292 ELLVARLLIESGAEVPYVSTSIPKTSLSAPDYEWLSALGVEV---------------RYRKSLEDDIAAVEEYRPDLAIG 356 (416)
T ss_pred hHHHHHHHHHcCCEEEEEecCCCChhhhHHHHHHHHhcCCcc---------------ccCCCHHHHHHHHhhcCCCEEEe
Confidence 5669999999999988877642111 00 00000 01000 00112222345567889999998
Q ss_pred cCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 92 HSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
+.. +..+++..|+|.+.
T Consensus 357 ~s~-------~~~~a~~~giP~~r 373 (416)
T cd01980 357 TTP-------LVQYAKEKGIPALY 373 (416)
T ss_pred CCh-------hhHHHHHhCCCEEE
Confidence 853 33457778999854
No 345
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=41.27 E-value=34 Score=27.35 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.6
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++||+|+.+...
T Consensus 27 tGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 27 TGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred ECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 5888888999999999999999988754
No 346
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=41.14 E-value=33 Score=28.43 Aligned_cols=43 Identities=12% Similarity=-0.066 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHhhccCCCCCChhhhHHHHHhcCChHHHHHHHHH
Q psy8013 190 ETLIAGIESAISDLKNGRAISPFKCHETVKSLYNWVDVSERTEI 233 (252)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~a~~~~~ 233 (252)
++++++|.+++..............++. .+.|||+..++++..
T Consensus 415 ~~la~ai~~~l~~~~~e~~~~~~~~~~~-v~~~~~~~w~~~~l~ 457 (460)
T cd03788 415 DEVADAIHRALTMPLEERRERHRKLREY-VRTHDVQAWANSFLD 457 (460)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhCCHHHHHHHHHH
Confidence 6777888777765432221222333444 467999999998764
No 347
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=40.87 E-value=46 Score=23.84 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|-.+.+.+|+..|++.|++|.++=.+
T Consensus 30 GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 30 GKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 56678999999999999999887554
No 348
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=40.82 E-value=49 Score=24.47 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
..-..|++.|.++|++|++++..
T Consensus 27 ~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 27 QLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHHHhCCCEEEEEECc
Confidence 34467899999999999999754
No 349
>PRK06924 short chain dehydrogenase; Provisional
Probab=40.54 E-value=39 Score=24.97 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.+++..
T Consensus 7 tGasggiG~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 7 TGTSQGLGEAIANQLLEKGTHVISISRT 34 (251)
T ss_pred ecCCchHHHHHHHHHHhcCCEEEEEeCC
Confidence 3566666778999999999999887754
No 350
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=40.50 E-value=39 Score=24.98 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.+.|++|.+++..
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~ 33 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRR 33 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 3555666677899999999999888764
No 351
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=40.50 E-value=1.7e+02 Score=22.65 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcc------ee------eeeCCeEEEEeecccccCCCcccccccchHHH
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG------IR------YMTNGLKVYYCPIKTFYNQSILPTMVCSIPLV 77 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~------~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l 77 (252)
..|=.+.+..++..+.+.|+.|.++..+...... .. ...+++.+..++.... ..........+
T Consensus 44 G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 118 (300)
T TIGR00750 44 GAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGH-----LGGLSQATREL 118 (300)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCcccc-----ccchhHHHHHH
Confidence 4577788899999999999999998876332110 00 0112333333332110 11111123344
Q ss_pred HHHHhhCCCcEEEecCch
Q psy8013 78 RHILLREEISIVHGHSAF 95 (252)
Q Consensus 78 ~~~~~~~~~Dvvh~~~~~ 95 (252)
...++..++|+|.+-+..
T Consensus 119 ~~~l~~~g~D~viidT~G 136 (300)
T TIGR00750 119 ILLLDAAGYDVIIVETVG 136 (300)
T ss_pred HHHHHhCCCCEEEEeCCC
Confidence 555777899999998753
No 352
>PRK06179 short chain dehydrogenase; Provisional
Probab=40.48 E-value=37 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=22.4
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.+++.+
T Consensus 10 tGasg~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 10 TGASSGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred ecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3555666678999999999999888765
No 353
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=40.21 E-value=1.7e+02 Score=22.48 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=24.1
Q ss_pred hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 83 REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 83 ~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
...||+++..+-..... +..+.+..+.+.++.+.+.
T Consensus 68 ~~~Pdl~I~aGrrta~l--~~~lkk~~~~~~vVqI~~P 103 (329)
T COG3660 68 EQRPDLIITAGRRTAPL--AFYLKKKFGGIKVVQIQDP 103 (329)
T ss_pred cCCCceEEecccchhHH--HHHHHHhcCCceEEEeeCC
Confidence 34699999998765443 5666666776666666554
No 354
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=40.05 E-value=1.8e+02 Score=24.01 Aligned_cols=69 Identities=7% Similarity=0.038 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEec
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGH 92 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~ 92 (252)
....+++.+.+.|+++.++....+.........+ +.+.++.... .........+.++.++.++|+|+..
T Consensus 13 ~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad--~~~~~~~~~~------~~~~~d~~~l~~~~~~~~id~I~p~ 81 (450)
T PRK06111 13 IAVRIIRTCQKLGIRTVAIYSEADRDALHVKMAD--EAYLIGGPRV------QESYLNLEKIIEIAKKTGAEAIHPG 81 (450)
T ss_pred HHHHHHHHHHHcCCeEEEEechhhccCcchhhCC--EEEEcCCCCc------cccccCHHHHHHHHHHhCCCEEEeC
Confidence 4688889999999999998764322111000000 1222221100 0111223457778888899998764
No 355
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=40.04 E-value=40 Score=26.46 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.9
Q ss_pred HHHHHHHCCcEEEEEec
Q psy8013 20 LSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 20 l~~~L~~~G~~V~v~~~ 36 (252)
+|+.|.+.||+|+++-.
T Consensus 35 MArnLlkAGheV~V~Dr 51 (341)
T TIGR01724 35 MAIEFAMAGHDVVLAEP 51 (341)
T ss_pred HHHHHHHCCCEEEEEeC
Confidence 88899999999999854
No 356
>PLN02214 cinnamoyl-CoA reductase
Probab=39.60 E-value=42 Score=26.48 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=23.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++|++|..++..
T Consensus 16 TGatGfIG~~l~~~L~~~G~~V~~~~r~ 43 (342)
T PLN02214 16 TGAGGYIASWIVKILLERGYTVKGTVRN 43 (342)
T ss_pred ECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 5777778888999999999999988764
No 357
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=39.57 E-value=2e+02 Score=23.00 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHHCC--------cEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRG--------HKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G--------~~V~v~~~~ 37 (252)
|.+.+-..|+..|++.| |+|+++..+
T Consensus 6 GaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~ 39 (342)
T TIGR03376 6 GSGNWGTAIAKIVAENARALPELFEESVRMWVFE 39 (342)
T ss_pred CcCHHHHHHHHHHHHcCCcccccCCceEEEEEec
Confidence 45567778999999999 999999874
No 358
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.51 E-value=41 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 13 tG~sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 13 TGAGRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred EcCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4666677788999999999998887754
No 359
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=39.41 E-value=47 Score=25.78 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=23.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.+.|++|.++..+
T Consensus 11 tG~~G~IG~~l~~~L~~~G~~V~~~~r~ 38 (325)
T PLN02989 11 TGASGYIASWIVKLLLFRGYTINATVRD 38 (325)
T ss_pred ECCchHHHHHHHHHHHHCCCEEEEEEcC
Confidence 4777777888999999999999877654
No 360
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=39.20 E-value=1.7e+02 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.-|.+++...+++.|.+.|+++.++-.+
T Consensus 405 I~G~Gr~G~~va~~L~~~g~~vvvID~d 432 (601)
T PRK03659 405 IVGFGRFGQVIGRLLMANKMRITVLERD 432 (601)
T ss_pred EecCchHHHHHHHHHHhCCCCEEEEECC
Confidence 3577888899999999999999888765
No 361
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=39.20 E-value=2.6e+02 Score=24.23 Aligned_cols=45 Identities=18% Similarity=0.064 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 76 LVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 76 ~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
...+.+.+.+||+|.+-.....-.....+-+...|-.++.|+|..
T Consensus 376 ~~l~~~LR~dPDvI~vGEiRd~eta~~a~~aa~tGHlv~tTlHa~ 420 (564)
T TIGR02538 376 AALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTN 420 (564)
T ss_pred HHHHHHhccCCCEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeccC
Confidence 333444557999998887654433223344555787899999986
No 362
>PRK10436 hypothetical protein; Provisional
Probab=39.10 E-value=2.3e+02 Score=23.75 Aligned_cols=44 Identities=20% Similarity=0.128 Sum_probs=28.8
Q ss_pred HHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 77 VRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 77 l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
..+.+.+.+||+|.+-.....-......-+...|-.++.|+|..
T Consensus 279 ~lr~~LR~dPDvI~vGEIRD~eta~~al~AA~TGHlVlsTlHa~ 322 (462)
T PRK10436 279 VLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTN 322 (462)
T ss_pred HHHHHhcCCCCEEEECCCCCHHHHHHHHHHHHcCCcEEEeeccC
Confidence 33444457999998887654333223334455788899999986
No 363
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=39.02 E-value=1.7e+02 Score=22.04 Aligned_cols=105 Identities=9% Similarity=-0.099 Sum_probs=59.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCc--c--eeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHh
Q psy8013 7 YPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRV--G--IRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILL 82 (252)
Q Consensus 7 ~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (252)
.+...|... +.++.+...+.|..|.++....+-.. . ..... ++.+......... ......+.+.+.
T Consensus 85 ~~Rv~G~dl-~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~--------~~e~~~i~~~I~ 154 (243)
T PRK03692 85 VSRVAGADL-WEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQW-NVNIVGSQDGYFT--------PEQRQALFERIH 154 (243)
T ss_pred CCeeChHHH-HHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHh-CCEEEEEeCCCCC--------HHHHHHHHHHHH
Confidence 345677764 45677777778899999877532100 0 01122 5555433322110 112234667788
Q ss_pred hCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCC
Q psy8013 83 REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLF 121 (252)
Q Consensus 83 ~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~ 121 (252)
..+||+|.+-...+---..........+.++++++-+.+
T Consensus 155 ~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~~gvGg~f 193 (243)
T PRK03692 155 ASGAKIVTVAMGSPKQEIFMRDCRLVYPDALYMGVGGTY 193 (243)
T ss_pred hcCCCEEEEECCCcHHHHHHHHHHHhCCCCEEEEeCeEE
Confidence 889999988765443222244455556778888777654
No 364
>PLN02650 dihydroflavonol-4-reductase
Probab=38.94 E-value=50 Score=26.08 Aligned_cols=28 Identities=25% Similarity=0.096 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++|++|.++...
T Consensus 11 TGatGfIGs~l~~~L~~~G~~V~~~~r~ 38 (351)
T PLN02650 11 TGASGFIGSWLVMRLLERGYTVRATVRD 38 (351)
T ss_pred eCCcHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 5788888889999999999999987754
No 365
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=38.86 E-value=2.2e+02 Score=23.93 Aligned_cols=69 Identities=6% Similarity=-0.044 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecC
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS 93 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~ 93 (252)
....+++...+.|+++..+....+.........+ +.+.++.... ..+.....+.++.++.++|.||.-.
T Consensus 13 ~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD--~~~~i~~~~~-------~~y~d~~~i~~~a~~~~iDaI~pg~ 81 (478)
T PRK08463 13 IAVRVIRACRDLHIKSVAIYTEPDRECLHVKIAD--EAYRIGTDPI-------KGYLDVKRIVEIAKACGADAIHPGY 81 (478)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCccCCcchhhcC--EEEEcCCCch-------hcccCHHHHHHHHHHhCCCEEEECC
Confidence 4677888899999997766654222111000011 2223332110 1112234677778888999998643
No 366
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=38.83 E-value=33 Score=25.66 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYK 39 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 39 (252)
.||.+..-..+++.|.+.||+|.+++.+.+
T Consensus 6 ~GatG~~G~~~~~~L~~~~~~v~~~~r~~~ 35 (275)
T COG0702 6 TGATGFVGGAVVRELLARGHEVRAAVRNPE 35 (275)
T ss_pred EecccchHHHHHHHHHhCCCEEEEEEeCHH
Confidence 477777788899999999999999998743
No 367
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=38.80 E-value=43 Score=24.51 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.+.|++|.+++.+
T Consensus 11 tG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 11 TGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4666677788999999999999877765
No 368
>PRK06914 short chain dehydrogenase; Provisional
Probab=38.65 E-value=42 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=22.6
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++|++|.+++..
T Consensus 9 tGasg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 9 TGASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred ECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 4666667788999999999999888754
No 369
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=38.65 E-value=42 Score=25.13 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=23.1
Q ss_pred CCCcHH--HHHHHHHHHHH-HCCcEEEEEeccC
Q psy8013 9 NVGGVE--EHIFNLSQCLL-QRGHKVIVLTHSY 38 (252)
Q Consensus 9 ~~GG~~--~~~~~l~~~L~-~~G~~V~v~~~~~ 38 (252)
..||++ +.+.+|+.+|+ ..|++|-++=.+.
T Consensus 10 ~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDp 42 (259)
T COG1192 10 QKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDP 42 (259)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 357766 67789999999 5569999887654
No 370
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=38.60 E-value=42 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=21.8
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++|++|.++...
T Consensus 11 tGasg~iG~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 11 TGASRGIGRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4666666778999999999998777654
No 371
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=38.58 E-value=1.1e+02 Score=23.85 Aligned_cols=77 Identities=10% Similarity=0.050 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHC--CcEEEEEeccCCCCcceeeeeCCe-EEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 15 EHIFNLSQCLLQR--GHKVIVLTHSYKDRVGIRYMTNGL-KVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 15 ~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
..+.-+.+.|.+. +.+|++++..... ......+.+ +++.++.....+.......+.....+.+.+++.++|++..
T Consensus 14 vl~~p~l~~Lr~~~P~a~I~~l~~~~~~--~~~~~~p~vd~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~yD~vi~ 91 (319)
T TIGR02193 14 IHTLPALTDIKRALPDVEIDWVVEEGFA--DIVRLHPAVDEVIPVALRRWRKTLFSAATWREIKALRALLRAERYDAVID 91 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEChhHh--hhhhcCCCccEEEEechhhhhhccccchhHHHHHHHHHHHhhccchhhhh
Confidence 3445567888776 7899999885321 111123344 3555543321111000011122334556678889998865
Q ss_pred cC
Q psy8013 92 HS 93 (252)
Q Consensus 92 ~~ 93 (252)
..
T Consensus 92 ~~ 93 (319)
T TIGR02193 92 AQ 93 (319)
T ss_pred hh
Confidence 53
No 372
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=38.57 E-value=50 Score=22.05 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=24.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEE
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIV 33 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v 33 (252)
|....|-.+..+..+++.|...|++|.+
T Consensus 7 Y~S~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 7 YLSLSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred EECCCChHHHHHHHHHHHHhhCCeeEEe
Confidence 5567799999999999999989999873
No 373
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=38.50 E-value=56 Score=22.57 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|-.+.+.+|+..|+++|++|-++=.+
T Consensus 12 GKtt~a~~la~~l~~~g~~vllvD~D 37 (179)
T cd02036 12 GKTTTTANLGTALAQLGYKVVLIDAD 37 (179)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 44577889999999999999988554
No 374
>smart00040 CSF2 Granulocyte-macrophage colony-simulating factor (GM-CSF). GM-CSF stimulates the development of and the cytotoxic activity of white blood cells.
Probab=38.30 E-value=1e+02 Score=19.60 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHhhccCCCCC--ChhhhHHHHHhcCChHH--HHHHHHHHHHHHhhc
Q psy8013 190 ETLIAGIESAISDLKNGRAI--SPFKCHETVKSLYNWVD--VSERTEIVYKRVTQE 241 (252)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~sw~~--~a~~~~~~y~~~~~~ 241 (252)
-..++||.+|+..+...... ...+.-+-|.+.|+-+. +.+.-.++|++=+..
T Consensus 13 ~kHVdAIkEAlsLLn~s~dt~a~mnEtVeVVSe~Fd~qeptClQtRL~LYkqGLrG 68 (121)
T smart00040 13 WKHVDAIKEALSLLNDSRDTAAVMNETVEVVSEMFDLQEPTCLQTRLKLYKQGLRG 68 (121)
T ss_pred HHHHHHHHHHHHHHhcCCchHhHhcchHHHHHhccCCCCCcHHHHHHHHHHhhccc
Confidence 44688899999988775411 11223456788999766 888888999987643
No 375
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=38.28 E-value=83 Score=26.38 Aligned_cols=94 Identities=17% Similarity=0.091 Sum_probs=48.4
Q ss_pred CCcEEEecCchhHHHHHHHHHH-HhcCCcEEEEecCCCCCCchhhH--HHHHHHHHhhcCCCEEEEechhhhhhHHHhh-
Q psy8013 85 EISIVHGHSAFSALAHETMMIA-RLLGLKTVFTDHSLFGFADSSAI--VTNKCLEISLAGCNHCICVSHIGKENTVLRA- 160 (252)
Q Consensus 85 ~~Dvvh~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~~~~~--~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~~- 160 (252)
.-|+|-+|.....+. ...+. +..+.++.+..|..|+....... ....+++.+ -.||.|-..+....++++...
T Consensus 141 ~~D~VWVhDYhL~ll--P~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP~r~eiL~gl-L~aDlIgFqt~~~~~nFl~~~~ 217 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLL--PQMLRERGPDARIGFFLHIPFPSSEIFRCLPWREEILRGL-LGADLIGFQTFEYARNFLSCCK 217 (474)
T ss_dssp TT-EEEEESGGGTTH--HHHHHHTT--SEEEEEE-S----HHHHTTSTTHHHHHHHH-TTSSEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcHHHH--HHHHHhhcCCceEeeEEecCCCCHHHHhhCCcHHHHHHHh-hcCCEEEEecHHHHHHHHHHHH
Confidence 568999999876443 33443 34467888999998764433221 223334443 359999999998888875332
Q ss_pred ---cc--CC-----------CceEEccCCccCCCCCC
Q psy8013 161 ---RV--NH-----------YNVSVIPNAVDTTVFVP 181 (252)
Q Consensus 161 ---~~--~~-----------~~i~vI~ngvd~~~f~~ 181 (252)
+. .. -++.+.|-|||++.|..
T Consensus 218 r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~ 254 (474)
T PF00982_consen 218 RLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQ 254 (474)
T ss_dssp HHS-EEEEETTE-EEETTEEEEEEE------HHHHHH
T ss_pred HHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHh
Confidence 11 11 13667788888877653
No 376
>PRK09135 pteridine reductase; Provisional
Probab=38.05 E-value=43 Score=24.60 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 12 tGa~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 12 TGGARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4666677788999999999999888764
No 377
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=37.97 E-value=43 Score=22.74 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=27.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 5 FFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 5 ~~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.|....|.++.++..++..|...|+++.+....
T Consensus 7 vy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~ 39 (151)
T COG0716 7 VYGSRTGNTEKVAEIIAEELGADGFEVDIDIRP 39 (151)
T ss_pred EEEcCCCcHHHHHHHHHHHhccCCceEEEeecC
Confidence 356678999999999999999999999655543
No 378
>PRK12829 short chain dehydrogenase; Provisional
Probab=37.93 E-value=38 Score=25.21 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 17 tGa~g~iG~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 17 TGGASGIGRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred eCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4666667788999999999998777754
No 379
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=37.79 E-value=1.9e+02 Score=22.31 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHHHHC--CcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcE
Q psy8013 11 GGVEEHIFNLSQCLLQR--GHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISI 88 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dv 88 (252)
.|.+.-...|....... ..+|.++..+.++... .....|+.++.++.... .....-..+.+.++..++|+
T Consensus 92 Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~-~A~~~gIp~~~~~~~~~-------~~~~~e~~~~~~l~~~~~Dl 163 (280)
T TIGR00655 92 SKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRS-LVERFGIPFHYIPATKD-------NRVEHEKRQLELLKQYQVDL 163 (280)
T ss_pred cCCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHH-HHHHhCCCEEEcCCCCc-------chhhhHHHHHHHHHHhCCCE
Confidence 44555666677665533 2456555554332211 23345666666553210 00111235667788899999
Q ss_pred EEecCchhHH
Q psy8013 89 VHGHSAFSAL 98 (252)
Q Consensus 89 vh~~~~~~~~ 98 (252)
+.+.++.-.+
T Consensus 164 ivlagym~il 173 (280)
T TIGR00655 164 VVLAKYMQIL 173 (280)
T ss_pred EEEeCchhhC
Confidence 9998876544
No 380
>PLN02686 cinnamoyl-CoA reductase
Probab=37.71 E-value=53 Score=26.26 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=23.8
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++|++|.++...
T Consensus 59 TGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 59 TGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred ECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5788888899999999999999887653
No 381
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=37.61 E-value=2e+02 Score=25.37 Aligned_cols=70 Identities=16% Similarity=0.058 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHCCcEEE-EEeccCCCCcc--------eeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhh
Q psy8013 13 VEEHIFNLSQCLLQRGHKVI-VLTHSYKDRVG--------IRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLR 83 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~G~~V~-v~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (252)
...+..-..+.|.+.||+|. |+|.. +.+.. ......|+.++..... . .......++.
T Consensus 8 ~~~~a~~~l~~L~~~~~~i~~V~t~p-d~~~~~~~~~~v~~~a~~~~ip~~~~~~~------------~-~~~~~~~l~~ 73 (660)
T PRK08125 8 YHDIGCVGIEALLAAGYEIAAVFTHT-DNPGENHFFGSVARLAAELGIPVYAPEDV------------N-HPLWVERIRE 73 (660)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEEeCC-CCCcCCCCcCHHHHHHHHcCCcEEeeCCC------------C-cHHHHHHHHh
Confidence 34455666688888899988 55533 21110 0112345555432211 0 1234456778
Q ss_pred CCCcEEEecCchh
Q psy8013 84 EEISIVHGHSAFS 96 (252)
Q Consensus 84 ~~~Dvvh~~~~~~ 96 (252)
.+||++.+..+..
T Consensus 74 ~~~D~iv~~~~~~ 86 (660)
T PRK08125 74 LAPDVIFSFYYRN 86 (660)
T ss_pred cCCCEEEEccccc
Confidence 8999998876543
No 382
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=37.52 E-value=53 Score=24.30 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=21.9
Q ss_pred CCcHH--HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVE--EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~--~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||++ +.+.+||..|+++|+.|.++=.+
T Consensus 9 KGGvGKTt~a~~LA~~la~~g~~VlliD~D 38 (251)
T TIGR01969 9 KGGTGKTTITANLGVALAKLGKKVLALDAD 38 (251)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45554 66778999999999998888554
No 383
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=37.39 E-value=48 Score=22.26 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=18.1
Q ss_pred HHHHHHHHHHCCcEEEEEeccC
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
-.-++-.|++.|++|++++...
T Consensus 10 G~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 10 GSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHHHCCCceEEEEccc
Confidence 3457888888999999999873
No 384
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=37.28 E-value=1.4e+02 Score=20.73 Aligned_cols=135 Identities=12% Similarity=-0.044 Sum_probs=66.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcce--------e---eeeCC-eEEEEeecccccCCCcccccccchHHH
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGI--------R---YMTNG-LKVYYCPIKTFYNQSILPTMVCSIPLV 77 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--------~---~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~l 77 (252)
..|-...+.+++.+..+.|..|.+++.......-. . ....+ ..+...+........ ..........+
T Consensus 9 G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~-~~~~~~~~~~i 87 (187)
T cd01124 9 GTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAE-SSLRLELIQRL 87 (187)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhh-hhhhHHHHHHH
Confidence 34777788888888888999999888753211100 0 00011 122221111000000 00000112445
Q ss_pred HHHHhhCCCcEEEecCchhHHH---H-------HHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEE
Q psy8013 78 RHILLREEISIVHGHSAFSALA---H-------ETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCIC 147 (252)
Q Consensus 78 ~~~~~~~~~Dvvh~~~~~~~~~---~-------~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 147 (252)
.+.+...+++++.+-.+...+. . ......+..++.++++.|........ ........-+|.++.
T Consensus 88 ~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~------~~~~~~~~~aD~ii~ 161 (187)
T cd01124 88 KDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTG------FGGGDVEYLVDGVIR 161 (187)
T ss_pred HHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcc------cCcCceeEeeeEEEE
Confidence 5666678999998888765432 0 01112234578888888865321100 001122334888888
Q ss_pred echh
Q psy8013 148 VSHI 151 (252)
Q Consensus 148 ~S~~ 151 (252)
....
T Consensus 162 l~~~ 165 (187)
T cd01124 162 LRLD 165 (187)
T ss_pred EEEE
Confidence 8754
No 385
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=37.25 E-value=48 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=23.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++|++|.+....
T Consensus 11 TGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 11 TGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4777778888999999999999877654
No 386
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=37.21 E-value=46 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++|++|.++...
T Consensus 10 tG~sg~iG~~la~~l~~~g~~v~~~~r~ 37 (258)
T PRK12429 10 TGAASGIGLEIALALAKEGAKVVIADLN 37 (258)
T ss_pred ECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4666667788999999999999888765
No 387
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=37.21 E-value=52 Score=22.73 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
|-.+...+||..|++.|+.|.++-.+.
T Consensus 12 GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 12 GKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred ChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 445678899999999999999987653
No 388
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=37.20 E-value=44 Score=27.03 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCCcHH--HHHHHHHHHHHHCCcEEEEEe
Q psy8013 9 NVGGVE--EHIFNLSQCLLQRGHKVIVLT 35 (252)
Q Consensus 9 ~~GG~~--~~~~~l~~~L~~~G~~V~v~~ 35 (252)
..||++ +.+.+|+..|+..|+.|-++=
T Consensus 114 ~KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 114 HKGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 357776 457899999999999998884
No 389
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=37.09 E-value=1.3e+02 Score=20.20 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCcEEEEEeccC
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
+.++.+.|.++|+.+.+++...
T Consensus 32 ~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 32 AVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred hHHHHHHHHHCCCEEEEEeCCC
Confidence 3578899999999999999863
No 390
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=37.01 E-value=59 Score=22.95 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
....++.+.|.+.|++|+++.+.
T Consensus 14 ~~~~~ll~~L~~~g~~V~vi~T~ 36 (177)
T TIGR02113 14 YKAADLTSQLTKLGYDVTVLMTQ 36 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEECh
Confidence 45678999999999999998875
No 391
>PRK10126 tyrosine phosphatase; Provisional
Probab=37.00 E-value=55 Score=22.15 Aligned_cols=36 Identities=8% Similarity=-0.110 Sum_probs=23.8
Q ss_pred HHhhcCCCEEEEechhhhhhHHHhhccCCCceEEcc
Q psy8013 136 EISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIP 171 (252)
Q Consensus 136 ~~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ 171 (252)
...+..+|.|++..+..++.+...++....++..+-
T Consensus 70 ~~~~~~~DlIl~Md~~~~~~l~~~~p~~~~k~~~l~ 105 (147)
T PRK10126 70 RRLCRNYDLILTMEKRHIERLCEMAPEMRGKVMLFG 105 (147)
T ss_pred HHHhccCCEEEECCHHHHHHHHHhcCcccCcEEehh
Confidence 345667999999998877776554443334665544
No 392
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=36.95 E-value=48 Score=24.59 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=22.6
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++|++|.++...
T Consensus 16 tGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 16 TGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred ECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4777777888999999999998876554
No 393
>PRK06180 short chain dehydrogenase; Provisional
Probab=36.94 E-value=45 Score=25.23 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 10 tGasggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 10 TGVSSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred ecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence 3555566677899999999999888764
No 394
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=36.93 E-value=70 Score=23.76 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.3
Q ss_pred CCCcHH--HHHHHHHHHHHHCCcEEEEEeccCC
Q psy8013 9 NVGGVE--EHIFNLSQCLLQRGHKVIVLTHSYK 39 (252)
Q Consensus 9 ~~GG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 39 (252)
..||++ +.+..|+.+|+++|-.|.++=.+..
T Consensus 9 ~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn 41 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAARGARVALIDADPN 41 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 346555 6778889999999999999987643
No 395
>PRK07326 short chain dehydrogenase; Provisional
Probab=36.86 E-value=41 Score=24.55 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=22.6
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.+.|++|.++...
T Consensus 12 tGatg~iG~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 12 TGGSKGIGFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred ECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence 4666777788999999999998887654
No 396
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=36.73 E-value=1e+02 Score=22.91 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
.||....-..+++.|++.|++|.++..
T Consensus 16 tG~~~gIG~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 16 TGCDTGLGQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEecC
Confidence 466666778899999999999876643
No 397
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=36.73 E-value=85 Score=21.09 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=22.4
Q ss_pred CCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|...|=.+.+..|++.|.++|+.|.++-..
T Consensus 8 ~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 8 PKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 345688899999999999999999866554
No 398
>COG1647 Esterase/lipase [General function prediction only]
Probab=36.73 E-value=1.8e+02 Score=21.69 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEE
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVH 90 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh 90 (252)
.|..+-+..|++.|.++|+.|+ ++..++.-...+. ... .....++...-...+.++...+|=|-
T Consensus 25 TGt~~Dvr~Lgr~L~e~GyTv~--aP~ypGHG~~~e~----------fl~----t~~~DW~~~v~d~Y~~L~~~gy~eI~ 88 (243)
T COG1647 25 TGTPRDVRMLGRYLNENGYTVY--APRYPGHGTLPED----------FLK----TTPRDWWEDVEDGYRDLKEAGYDEIA 88 (243)
T ss_pred CCCcHHHHHHHHHHHHCCceEe--cCCCCCCCCCHHH----------Hhc----CCHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 5777889999999999998665 5544332211000 000 01112233333344556666777665
Q ss_pred ecCc-hhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 91 GHSA-FSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 91 ~~~~-~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
+.+. ..+.. +++++.....+-|+.+-..
T Consensus 89 v~GlSmGGv~--alkla~~~p~K~iv~m~a~ 117 (243)
T COG1647 89 VVGLSMGGVF--ALKLAYHYPPKKIVPMCAP 117 (243)
T ss_pred EEeecchhHH--HHHHHhhCCccceeeecCC
Confidence 5553 33333 6677777666655555443
No 399
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=36.56 E-value=1.3e+02 Score=22.01 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=38.9
Q ss_pred hHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchhhHHHHHHHHHhhcCCCEEEEech
Q psy8013 74 IPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSH 150 (252)
Q Consensus 74 ~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~ 150 (252)
...+.++++..++|+|+.|+.-+.-. ...+....+++++-.++-... .. +. . .......+|.++.-|.
T Consensus 66 ~~~i~~~~~~~~~d~vQLHg~e~~~~--~~~l~~~~~~~iik~i~v~~~-~~----l~-~-~~~~~~~~d~~L~Ds~ 133 (210)
T PRK01222 66 DEEIDEIVETVPLDLLQLHGDETPEF--CRQLKRRYGLPVIKALRVRSA-GD----LE-A-AAAYYGDADGLLLDAY 133 (210)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHH--HHHHHhhcCCcEEEEEecCCH-HH----HH-H-HHhhhccCCEEEEcCC
Confidence 44677788889999999998654322 333344456777766654211 01 11 1 1222345788887764
No 400
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.40 E-value=48 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=22.4
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.+++..
T Consensus 12 tGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 12 TGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4666667788999999999998776654
No 401
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=36.39 E-value=61 Score=22.72 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEeccCC
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHSYK 39 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~~~ 39 (252)
|-.+.+.+||..|+++|+.|-++-.+..
T Consensus 11 GKTt~a~~la~~la~~g~~VlliD~D~~ 38 (195)
T PF01656_consen 11 GKTTIAANLAQALARKGKKVLLIDLDPQ 38 (195)
T ss_dssp SHHHHHHHHHHHHHHTTS-EEEEEESTT
T ss_pred cHHHHHHHHHhccccccccccccccCcc
Confidence 4557788999999999999999987643
No 402
>PRK07856 short chain dehydrogenase; Provisional
Probab=36.33 E-value=49 Score=24.51 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.+.|++|.++...
T Consensus 12 tGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 12 TGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4666666788999999999999888765
No 403
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=36.32 E-value=60 Score=26.12 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHHHHHC-CcEEEEEeccCC---------CCcceeeeeCCeEEEEeecc
Q psy8013 11 GGVEEHIFNLSQCLLQR-GHKVIVLTHSYK---------DRVGIRYMTNGLKVYYCPIK 59 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~-G~~V~v~~~~~~---------~~~~~~~~~~~~~v~~~~~~ 59 (252)
|-++ ++..||+.|+.. |+.|.+...+.. +.........|++|......
T Consensus 12 GDIG-VcWRLArqLa~e~g~~VrLwvDdl~af~~i~P~~~~~~~~q~~~gv~i~~W~~~ 69 (374)
T PF10093_consen 12 GDIG-VCWRLARQLAAEHGQQVRLWVDDLAAFARICPDLDPELSQQTIQGVEIRHWDAP 69 (374)
T ss_pred cchH-HHHHHHHHHHHHhCCeEEEEECCHHHHHHhCCCCCcccccceECCeEEEecCCc
Confidence 6555 589999999987 999999986421 11112335678888877644
No 404
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=36.28 E-value=1.3e+02 Score=20.02 Aligned_cols=34 Identities=6% Similarity=0.025 Sum_probs=22.7
Q ss_pred hhcCCCEEEEechhhhhhHHHhhccCCCceEEcc
Q psy8013 138 SLAGCNHCICVSHIGKENTVLRARVNHYNVSVIP 171 (252)
Q Consensus 138 ~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ 171 (252)
.+..+|.|+++++...+.+...+.....++..+.
T Consensus 73 ~~~~aDlIi~m~~~~~~~~~~~~~~~~~~v~~~~ 106 (141)
T cd00115 73 DFDEFDLIITMDESNLAELLEPPPGGRAKVELLG 106 (141)
T ss_pred HHHhCCEEEEECHHHHHHHHhcCCCCcceEEeHh
Confidence 4567999999999888776433333334555554
No 405
>PRK07041 short chain dehydrogenase; Provisional
Probab=36.26 E-value=49 Score=24.01 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
||....-..+++.|.++|++|.++...
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~ 30 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRS 30 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 555666678999999999999887754
No 406
>PLN02572 UDP-sulfoquinovose synthase
Probab=36.17 E-value=41 Score=27.79 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEe
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLT 35 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~ 35 (252)
.||.+..-..|++.|.++|++|.++.
T Consensus 53 TGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 53 IGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 57778888889999999999999874
No 407
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=36.15 E-value=1.3e+02 Score=20.28 Aligned_cols=35 Identities=3% Similarity=-0.153 Sum_probs=23.4
Q ss_pred HhhcCCCEEEEechhhhhhHHHhhccCCCceEEcc
Q psy8013 137 ISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIP 171 (252)
Q Consensus 137 ~~~~~~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~ 171 (252)
..+..+|.|++.++..++.+...++....++..+.
T Consensus 71 ~~~~~~DlIl~M~~~~~~~l~~~~p~~~~k~~~l~ 105 (144)
T PRK11391 71 EMARNYDLILAMESEHIAQVTAIAPEVRGKTMLFG 105 (144)
T ss_pred HHHhhCCEEEECCHHHHHHHHHHCCCCcCeEEehh
Confidence 44567999999998877766544443345665543
No 408
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=36.14 E-value=2.3e+02 Score=23.72 Aligned_cols=70 Identities=6% Similarity=-0.027 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEe-ecccccCCCcccccccchHHHHHHHhhCCCcEEEec
Q psy8013 14 EEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYC-PIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGH 92 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~ 92 (252)
+.....+++.+.+.|+++.+++...+...... .... +.+.+ |... ...+.....+.++.++.++|.||.-
T Consensus 14 geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~-~~aD-~~~~i~p~~~-------~~~y~d~~~i~~~a~~~~~daI~pg 84 (467)
T PRK12833 14 GEIAVRIIRAARELGMRTVAACSDADRDSLAA-RMAD-EAVHIGPSHA-------AKSYLNPAAILAAARQCGADAIHPG 84 (467)
T ss_pred cHHHHHHHHHHHHcCCeEEEEECCCCCCChhH-HhCC-EEEecCCCCc-------cccccCHHHHHHHHHHhCCCEEEEC
Confidence 34577889999999999887765432211100 0010 11111 1100 0111233467778888899999864
No 409
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=36.13 E-value=46 Score=25.76 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.+.|++|.++...
T Consensus 6 tG~~G~iG~~l~~~L~~~g~~V~~~~r~ 33 (328)
T TIGR03466 6 TGATGFVGSAVVRLLLEQGEEVRVLVRP 33 (328)
T ss_pred ECCccchhHHHHHHHHHCCCEEEEEEec
Confidence 3666666777999999999999988865
No 410
>PRK05993 short chain dehydrogenase; Provisional
Probab=36.00 E-value=51 Score=24.94 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.+.|++|.++...
T Consensus 10 tGasggiG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 10 TGCSSGIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred eCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3555556677899999999999887764
No 411
>PRK08226 short chain dehydrogenase; Provisional
Probab=35.99 E-value=46 Score=24.83 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 12 tG~s~giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 12 TGALQGIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred eCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 4666667788999999999998887654
No 412
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=35.97 E-value=53 Score=24.78 Aligned_cols=29 Identities=34% Similarity=0.401 Sum_probs=20.6
Q ss_pred CCcHH--HHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVE--EHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
.||++ +...++|-+|+..|+.|-++=.+.
T Consensus 9 KGGvGKSTva~~lA~aLa~~G~kVg~lD~Di 39 (261)
T PF09140_consen 9 KGGVGKSTVAVNLAVALARMGKKVGLLDLDI 39 (261)
T ss_dssp STTTTHHHHHHHHHHHHHCTT--EEEEE--T
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56554 778899999999999999997754
No 413
>PRK06194 hypothetical protein; Provisional
Probab=35.97 E-value=53 Score=24.92 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=22.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 12 tGasggIG~~la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 12 TGAASGFGLAFARIGAALGMKLVLADVQ 39 (287)
T ss_pred eCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4666666778999999999999877653
No 414
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=35.95 E-value=1.3e+02 Score=22.88 Aligned_cols=109 Identities=8% Similarity=-0.037 Sum_probs=57.1
Q ss_pred eCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCCCCCchh
Q psy8013 48 TNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSS 127 (252)
Q Consensus 48 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~ 127 (252)
..|+.++.+|..+..+ ...-..+.+++.+.+.|+|..--++-.++ .-+++...-++|=..|+..+.....
T Consensus 136 ~~~IPfhhip~~~~~k-------~e~E~~~~~ll~~~~~DlvVLARYMqILS---~d~~~~~~g~iINIHHSFLPaF~GA 205 (287)
T COG0788 136 RFDIPFHHIPVTKENK-------AEAEARLLELLEEYGADLVVLARYMQILS---PDFVERFPGKIINIHHSFLPAFIGA 205 (287)
T ss_pred HcCCCeeeccCCCCcc-------hHHHHHHHHHHHHhCCCEEeehhhHhhCC---HHHHHhccCcEEEecccccccCCCC
Confidence 3456666666543311 22344677888899999988776554443 2334555567776677765433322
Q ss_pred hHHHHHHHHHhhcC-CCEEEEechhhhhhHHHhhccCCCceEEccC
Q psy8013 128 AIVTNKCLEISLAG-CNHCICVSHIGKENTVLRARVNHYNVSVIPN 172 (252)
Q Consensus 128 ~~~~~~~~~~~~~~-~d~vi~~S~~~~~~~~~~~~~~~~~i~vI~n 172 (252)
.+ ++.++.+ ...|=+.+.+.-+++ ..-++-...+.-|.+
T Consensus 206 ~P-----Y~QA~eRGVKlIGATAHYVT~dL-DeGPIIeQdv~rV~H 245 (287)
T COG0788 206 NP-----YHQAYERGVKLIGATAHYVTADL-DEGPIIEQDVIRVDH 245 (287)
T ss_pred Ch-----HHHHHhcCCeEeeeeeeeccCCC-CCCCceeeeeeecCc
Confidence 22 2333333 445555555555443 333333334433333
No 415
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=35.80 E-value=50 Score=24.36 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.7
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
||.+..-..+++.|.++|++|.+++..
T Consensus 8 Ga~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 8 GAASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred CCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 555566678999999999998888765
No 416
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.76 E-value=1.1e+02 Score=21.39 Aligned_cols=23 Identities=22% Similarity=0.171 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
--.+-+++.|.++|++|+|+...
T Consensus 39 gDgl~~AR~L~~~G~~V~v~~~~ 61 (169)
T PF03853_consen 39 GDGLVAARHLANRGYNVTVYLVG 61 (169)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEEEe
Confidence 34566889999999999986654
No 417
>PRK07023 short chain dehydrogenase; Provisional
Probab=35.60 E-value=44 Score=24.57 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=21.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.+.|++|.+++.+
T Consensus 7 tGasggiG~~ia~~l~~~G~~v~~~~r~ 34 (243)
T PRK07023 7 TGHSRGLGAALAEQLLQPGIAVLGVARS 34 (243)
T ss_pred ecCCcchHHHHHHHHHhCCCEEEEEecC
Confidence 3555556677999999999999887764
No 418
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.58 E-value=51 Score=24.37 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 8 tG~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 8 TGGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 4666677788999999999999887754
No 419
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=35.52 E-value=55 Score=23.08 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|.+.+-..++..++..|++|+++...
T Consensus 6 GaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 6 GAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred cCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 55677888999999999999999875
No 420
>PF05908 DUF867: Protein of unknown function (DUF867); InterPro: IPR008585 This family consists of a number of bacterial and phage proteins with no known function and which are found in Bacillus species and the Lambda-like viruses.; PDB: 3A9L_A.
Probab=35.29 E-value=12 Score=26.85 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=20.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHC-CcEEEEE
Q psy8013 7 YPNVGGVEEHIFNLSQCLLQR-GHKVIVL 34 (252)
Q Consensus 7 ~P~~GG~~~~~~~l~~~L~~~-G~~V~v~ 34 (252)
.|+.||+|.-+-+||+.+++. ++...++
T Consensus 33 ApHGGgIE~gTsElA~~iA~~~~~s~y~F 61 (194)
T PF05908_consen 33 APHGGGIEPGTSELAEAIADGGDYSYYLF 61 (194)
T ss_dssp EEEEETTSTTHHHHHHHHHHHH--EEEEE
T ss_pred ecccCccCcCHHHHHHHHhccCCCCEEEE
Confidence 588999999999999999943 4444444
No 421
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=35.22 E-value=1.5e+02 Score=27.36 Aligned_cols=80 Identities=8% Similarity=0.026 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceee----eeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRY----MTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
....+++.|.+.|.+|............... ...+..++. -.....+.+.+++.+||++..
T Consensus 331 ~~~~la~~l~elGmevv~~g~~~~~~~d~~~~~~~~~~~~~vi~---------------~~d~~el~~~i~~~~pDLlig 395 (917)
T PRK14477 331 KTWSMVNALRELGVEVLAAGTQNSTLEDFARMKALMHKDAHIIE---------------DTSTAGLLRVMREKMPDLIVA 395 (917)
T ss_pred hHHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHhcCCCCEEEE---------------CCCHHHHHHHHHhcCCCEEEe
Confidence 5778899999999998664433211100000 001111100 112446778888899999988
Q ss_pred cCchhHHHHHHHHHHHhcCCcEEEEe
Q psy8013 92 HSAFSALAHETMMIARLLGLKTVFTD 117 (252)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~p~v~~~ 117 (252)
+... ..++++.++|++-..
T Consensus 396 ~~~~-------~~~a~k~giP~~~~~ 414 (917)
T PRK14477 396 GGKT-------KFLALKTRTPFLDIN 414 (917)
T ss_pred cCch-------hhHHHHcCCCeEEcc
Confidence 6532 235677899998544
No 422
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=35.15 E-value=53 Score=26.56 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
.||.+..-..+++.|.++|++|.+++...
T Consensus 66 tGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 66 VGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 47777778889999999999999888653
No 423
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=35.01 E-value=46 Score=26.01 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
.||.+..-..+++.|.++|++|.++..
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 6 TGGSGYIGSHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred ECCCChHHHHHHHHHHHCCCeEEEEec
Confidence 366666777899999999999998754
No 424
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber
Probab=34.93 E-value=1.1e+02 Score=18.62 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhccCCCCCChhhhHHHHHhcCChH--HHHHHHHHHHHHHhh
Q psy8013 192 LIAGIESAISDLKNGRAISPFKCHETVKSLYNWV--DVSERTEIVYKRVTQ 240 (252)
Q Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sw~--~~a~~~~~~y~~~~~ 240 (252)
..+.|.++|..+....+.....+..++.+.|.-. +....+....+..++
T Consensus 7 y~~MI~eAI~~l~er~GsS~~aI~kyI~~~y~~~~~~~~~~l~~aLkk~v~ 57 (88)
T cd00073 7 YSEMVTEAIKALKERKGSSLQAIKKYIEAKYKVDDENFNKLLKLALKKGVA 57 (88)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHH
Confidence 5677888888888888788888999999998643 223333334444443
No 425
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.88 E-value=2.5e+02 Score=23.21 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=48.8
Q ss_pred CCCCCCCCCc------HHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHH
Q psy8013 3 SDFFYPNVGG------VEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPL 76 (252)
Q Consensus 3 ~~~~~P~~GG------~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 76 (252)
.+.|+...|+ ..++..++++.|.+.|.+..|+++.-+. + .+....
T Consensus 305 ~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgt------------C-----------------trcga~ 355 (431)
T TIGR01917 305 FKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGT------------C-----------------TRCGAT 355 (431)
T ss_pred cCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCc------------c-----------------hhHHHH
Confidence 4556555443 3467888899999999998888865221 1 122335
Q ss_pred HHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEE
Q psy8013 77 VRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 77 l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
+.+.+.+..+-+||..+..+ +++..|.+.|+
T Consensus 356 m~keiE~~GIPvV~i~~~~p--------I~~~vGanRiv 386 (431)
T TIGR01917 356 MVKEIERAGIPVVHICTVTP--------IALTVGANRII 386 (431)
T ss_pred HHHHHHHcCCCEEEEeechh--------HHHhcCCCcee
Confidence 66777788888999888654 23345666544
No 426
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=34.87 E-value=64 Score=24.28 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=23.1
Q ss_pred CCcHH--HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVE--EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~--~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||++ +.+.+||..|+++|++|-++=.+
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 57666 66789999999999999988654
No 427
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=34.78 E-value=51 Score=24.71 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|.+++-.+|.+.|.+.||+|..+-.+
T Consensus 7 GLGrMG~n~v~rl~~~ghdvV~yD~n 32 (300)
T COG1023 7 GLGRMGANLVRRLLDGGHDVVGYDVN 32 (300)
T ss_pred ccchhhHHHHHHHHhCCCeEEEEcCC
Confidence 67788899999999999999988654
No 428
>KOG1429|consensus
Probab=34.77 E-value=54 Score=25.33 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||++...-.|++.|...||+|.++-..
T Consensus 33 tGgaGFIgSHLvdkLm~egh~VIa~Dn~ 60 (350)
T KOG1429|consen 33 TGGAGFIGSHLVDKLMTEGHEVIALDNY 60 (350)
T ss_pred ecCcchHHHHHHHHHHhcCCeEEEEecc
Confidence 6889999999999999999998877554
No 429
>PRK08703 short chain dehydrogenase; Provisional
Probab=34.73 E-value=46 Score=24.37 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=21.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 12 tG~sggiG~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 12 TGASQGLGEQVAKAYAAAGATVILVARH 39 (239)
T ss_pred ECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 3555566677899999999998887765
No 430
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.73 E-value=2.8e+02 Score=23.45 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCC-cEEEEEec
Q psy8013 17 IFNLSQCLLQRG-HKVIVLTH 36 (252)
Q Consensus 17 ~~~l~~~L~~~G-~~V~v~~~ 36 (252)
+..++..|.+.| |+|.++=.
T Consensus 25 l~~lAa~L~~~G~~~V~iiD~ 45 (497)
T TIGR02026 25 VAYIGGALLDAGYHDVTFLDA 45 (497)
T ss_pred HHHHHHHHHhcCCcceEEecc
Confidence 567888898999 89999844
No 431
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=34.73 E-value=64 Score=23.35 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=22.1
Q ss_pred CCcHH--HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVE--EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~--~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||++ +.+.+||..|++.|.+|-++=.+
T Consensus 8 KGGvGKTt~~~nLA~~la~~G~rvLliD~D 37 (212)
T cd02117 8 KGGIGKSTTSQNLSAALAEMGKKVLQVGCD 37 (212)
T ss_pred CCcCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 56655 56799999999999998877544
No 432
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=34.56 E-value=94 Score=21.30 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 9 NVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 9 ~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
...|-.+.+..|+..|.++|+.|.++-..
T Consensus 8 ~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 8 KNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 44678888999999999999999988654
No 433
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=34.55 E-value=56 Score=23.76 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
||....-..+++.|.++|++|.++...
T Consensus 5 G~~g~iG~~la~~l~~~G~~v~~~~r~ 31 (239)
T TIGR01830 5 GASRGIGRAIALKLAKEGAKVIITYRS 31 (239)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 555556678999999999998887654
No 434
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=34.39 E-value=2.8e+02 Score=23.23 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecC
Q psy8013 14 EEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHS 93 (252)
Q Consensus 14 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~ 93 (252)
..+...|++.|.+.|.+|..+......... . . + +... ........+.+.++ ++|++..+.
T Consensus 320 ~~~~~~la~~L~elG~~v~~~~~~~~~~~~-~-~---~-----~~~~--------i~~~D~~~le~~~~--~~dliig~s 379 (455)
T PRK14476 320 PDLLLALGSFLAEMGAEIVAAVTTTKSPAL-E-D---L-----PAEE--------VLIGDLEDLEELAE--GADLLITNS 379 (455)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCCcHHH-H-h---C-----CcCc--------EEeCCHHHHHHhcc--CCCEEEECc
Confidence 357899999999999998876654221111 0 0 0 0000 00112234555555 899999987
Q ss_pred chhHHHHHHHHHHHhcCCcEEE
Q psy8013 94 AFSALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~p~v~ 115 (252)
.. ..+++..++|++-
T Consensus 380 ~~-------~~~a~~~gip~~~ 394 (455)
T PRK14476 380 HG-------RQAAERLGIPLLR 394 (455)
T ss_pred hh-------HHHHHHcCCCEEE
Confidence 43 2346667999874
No 435
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=34.39 E-value=1.7e+02 Score=20.75 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=29.2
Q ss_pred hHHHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecCCC
Q psy8013 74 IPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLF 121 (252)
Q Consensus 74 ~~~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~ 121 (252)
...=.+++.+++.-|+|.-+....+-.-...+.+...+|.|+......
T Consensus 92 ~~~E~~qI~~HklAV~h~GNvk~hIi~K~r~ilr~vdIP~IiVcq~Pv 139 (194)
T TIGR03264 92 TPEEIEQINRHKLAVIHLGNVKSHIIYKARLILKHVDIPAIIVCQAPV 139 (194)
T ss_pred CHHHHHHHhhcCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 334456677777777877766554433333455566788876666554
No 436
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=34.30 E-value=1.6e+02 Score=20.58 Aligned_cols=101 Identities=13% Similarity=0.071 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccCCCCcc--eeeeeCCe-EEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEe
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSYKDRVG--IRYMTNGL-KVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHG 91 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~ 91 (252)
......++.|.+.|-+|++++...+.... ......|. +++.+....... ...-.....+..++++.+||+|.+
T Consensus 22 ~e~l~~A~~l~~~~~~v~~v~~G~~~~~~~~~~~~~~Gad~v~~~~~~~~~~----~~~~~~a~~l~~~i~~~~p~~Vl~ 97 (181)
T cd01985 22 LEAVEAALRLKEYGGEVTALVIGPPAAEVALREALAMGADKVLLVEDPALAG----YDPEATAKALAALIKKEKPDLILA 97 (181)
T ss_pred HHHHHHHHHHhhcCCeEEEEEECChHHHHHHHHHHHhCCCEEEEEecCcccC----CChHHHHHHHHHHHHHhCCCEEEE
Confidence 34555677776544578877765321111 11112233 455544322111 011223456777788889999877
Q ss_pred cCchhHHHHHHHHHHHhcCCcEEEEecCC
Q psy8013 92 HSAFSALAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
-....+ ..++..++..++.+++..+-+.
T Consensus 98 g~t~~g-~~la~rlA~~L~~~~vsdv~~l 125 (181)
T cd01985 98 GATSIG-KQLAPRVAALLGVPQISDVTKL 125 (181)
T ss_pred CCcccc-cCHHHHHHHHhCCCcceeEEEE
Confidence 764432 1236667777899887765553
No 437
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=34.19 E-value=51 Score=24.23 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++..+
T Consensus 12 tGasg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 12 TGAARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred cCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4556666678999999999998887764
No 438
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=34.10 E-value=53 Score=24.18 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=22.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.+++..
T Consensus 11 tGas~gIG~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 11 TGANTGLGQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence 3666666788999999999998888754
No 439
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=34.00 E-value=59 Score=25.82 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=19.1
Q ss_pred CCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|..||.. ++..|.+.||+|+++...
T Consensus 28 ~~~gG~~-----MA~~La~aG~~V~v~Dr~ 52 (342)
T PRK12557 28 PPYGGSR-----MAIEFAEAGHDVVLAEPN 52 (342)
T ss_pred CCcCHHH-----HHHHHHhCCCeEEEEECC
Confidence 3346644 788888999999999765
No 440
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=33.70 E-value=1.3e+02 Score=19.79 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=25.6
Q ss_pred HHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEecC
Q psy8013 76 LVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHS 119 (252)
Q Consensus 76 ~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 119 (252)
.+.+++...-|=||.+.+..++-. ..-+|...++|++.|-..
T Consensus 73 ~l~~l~~~~~P~iIvt~~~~~p~~--l~e~a~~~~ipll~t~~~ 114 (127)
T PF02603_consen 73 RLEKLFSYNPPCIIVTRGLEPPPE--LIELAEKYNIPLLRTPLS 114 (127)
T ss_dssp HHHHHCTTT-S-EEEETTT---HH--HHHHHHHCT--EEEESS-
T ss_pred HHHHHhCCCCCEEEEECcCCCCHH--HHHHHHHhCCcEEEcCCc
Confidence 566777777788898988765433 666788899999887654
No 441
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=33.70 E-value=68 Score=24.32 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=22.6
Q ss_pred CCcHH--HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVE--EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~--~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||++ +.+.+||..|+++|++|-++=.+
T Consensus 8 KGGVGKTT~a~nLA~~La~~G~~VlliD~D 37 (275)
T TIGR01287 8 KGGIGKSTTTQNIAAALAEMGKKVMIVGCD 37 (275)
T ss_pred CCcCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 57665 66789999999999998887443
No 442
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=33.64 E-value=57 Score=25.42 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=22.5
Q ss_pred CCCcHHHHHHH--HHHHHHHCCcEEEEEeccCC
Q psy8013 9 NVGGVEEHIFN--LSQCLLQRGHKVIVLTHSYK 39 (252)
Q Consensus 9 ~~GG~~~~~~~--l~~~L~~~G~~V~v~~~~~~ 39 (252)
..||++..+.. +|-.++++|+.|-+++.+..
T Consensus 8 GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 8 GKGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred cCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 36777766655 77777899999999988643
No 443
>PRK08267 short chain dehydrogenase; Provisional
Probab=33.61 E-value=57 Score=24.28 Aligned_cols=28 Identities=11% Similarity=0.006 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++..+
T Consensus 7 tGasg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 7 TGAASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 3666667788999999999999988754
No 444
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=33.59 E-value=47 Score=26.11 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=21.8
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
||.+..-..+++.|.+.|++|.++...
T Consensus 7 GatGfIG~~l~~~L~~~G~~V~~~~r~ 33 (343)
T TIGR01472 7 GITGQDGSYLAEFLLEKGYEVHGLIRR 33 (343)
T ss_pred cCCCcHHHHHHHHHHHCCCEEEEEecC
Confidence 666666678999999999999987654
No 445
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=33.59 E-value=54 Score=24.34 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=22.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||..-.-..+++.|.++|++|.++...
T Consensus 12 tGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 12 TGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred eCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 4555666678999999999998888654
No 446
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=33.55 E-value=67 Score=24.23 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=23.2
Q ss_pred CCCcHH--HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 9 NVGGVE--EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 9 ~~GG~~--~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
..||++ +.+.+||..|+++|++|-++=.+
T Consensus 7 gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 7 GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred cCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 367776 55789999999999998888554
No 447
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=33.44 E-value=59 Score=24.19 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.+.|++|.+++..
T Consensus 21 tGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 21 TGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4666667788999999999999888765
No 448
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=33.43 E-value=51 Score=27.18 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
.||.+..-.+|++.|.++|++|.++..
T Consensus 126 TGatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 126 TGGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred ECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 588888999999999999999998764
No 449
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.37 E-value=57 Score=23.76 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|+++|++|.++...
T Consensus 11 tGas~~iG~~ia~~l~~~G~~v~~~~r~ 38 (235)
T PRK06550 11 TGAASGIGLAQARAFLAQGAQVYGVDKQ 38 (235)
T ss_pred cCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4556666678999999999998887654
No 450
>PRK07774 short chain dehydrogenase; Provisional
Probab=33.32 E-value=62 Score=23.84 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=22.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 12 tGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 12 TGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3566666788999999999998887654
No 451
>PRK07890 short chain dehydrogenase; Provisional
Probab=33.31 E-value=50 Score=24.49 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||..-.-..+++.|.++|++|.++...
T Consensus 11 tGa~~~IG~~la~~l~~~G~~V~~~~r~ 38 (258)
T PRK07890 11 SGVGPGLGRTLAVRAARAGADVVLAART 38 (258)
T ss_pred ECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 4566666678999999999998877654
No 452
>PRK12827 short chain dehydrogenase; Provisional
Probab=33.22 E-value=49 Score=24.30 Aligned_cols=27 Identities=30% Similarity=0.275 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
.||....-..+++.|.++|++|.++..
T Consensus 12 tGasg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 12 TGGSGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred ECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence 355555567899999999999988764
No 453
>KOG1371|consensus
Probab=33.17 E-value=40 Score=26.43 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=22.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
.||++-.-...+-+|.++|++|.++=.
T Consensus 8 tGgaGyiGsht~l~L~~~gy~v~~vDN 34 (343)
T KOG1371|consen 8 TGGAGYIGSHTVLALLKRGYGVVIVDN 34 (343)
T ss_pred ecCCcceehHHHHHHHhCCCcEEEEec
Confidence 477777777888999999999998754
No 454
>PRK05866 short chain dehydrogenase; Provisional
Probab=33.16 E-value=60 Score=24.91 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=22.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||..-.-..+++.|+++|++|.++...
T Consensus 46 tGasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 46 TGASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred eCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3666666778999999999999887764
No 455
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=33.14 E-value=58 Score=25.73 Aligned_cols=28 Identities=29% Similarity=0.159 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.++|++|.++...
T Consensus 16 tG~~GfIG~~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 16 TGATGYIGSWLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4777778888999999999999887643
No 456
>KOG1014|consensus
Probab=33.12 E-value=43 Score=26.01 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=19.1
Q ss_pred HHHHHHHHHHCCcEEEEEeccCC
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYK 39 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~ 39 (252)
-...|++|+++|..|.+++.+.+
T Consensus 62 GKayA~eLAkrG~nvvLIsRt~~ 84 (312)
T KOG1014|consen 62 GKAYARELAKRGFNVVLISRTQE 84 (312)
T ss_pred hHHHHHHHHHcCCEEEEEeCCHH
Confidence 35689999999999999988643
No 457
>PHA02518 ParA-like protein; Provisional
Probab=33.03 E-value=75 Score=22.73 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=23.2
Q ss_pred CCcHH--HHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 10 VGGVE--EHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 10 ~GG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
.||++ +.+.+|+..|+++|+.|.++-.+.
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~ 39 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDP 39 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 46555 667889999999999999887763
No 458
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=32.88 E-value=1.6e+02 Score=19.97 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
..|-.+.+..++..+.+.|..|.++..+
T Consensus 9 GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 9 GAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 3466678899999999999999988865
No 459
>PRK08265 short chain dehydrogenase; Provisional
Probab=32.87 E-value=58 Score=24.34 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=22.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.+.|++|.++..+
T Consensus 12 tGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (261)
T PRK08265 12 TGGATLIGAAVARALVAAGARVAIVDID 39 (261)
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4666666778999999999998887664
No 460
>PRK07069 short chain dehydrogenase; Validated
Probab=32.85 E-value=57 Score=24.02 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
||..-.-..+++.|.++|++|.++...
T Consensus 6 G~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 6 GAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 555566677999999999999888754
No 461
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=32.83 E-value=1.3e+02 Score=24.85 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEEEecCchh
Q psy8013 17 IFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFS 96 (252)
Q Consensus 17 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvvh~~~~~~ 96 (252)
...+++.|.+.|.+|..++................ .... .. . .....+....+.+++.+||++..+..
T Consensus 297 ~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~~-----~~~~--~~-v--~~~~dl~~~~~~l~~~~pDllig~s~-- 364 (422)
T TIGR02015 297 ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRWL-----EMLG--VE-V--KYRASLEDDMEAVLEFEPDLAIGTTP-- 364 (422)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHHH-----HhcC--CC-c--eeccCHHHHHHHHhhCCCCEEEcCCc--
Confidence 78899999999999998765432111100000000 0000 00 0 00011221224567889999998853
Q ss_pred HHHHHHHHHHHhcCCcEEE
Q psy8013 97 ALAHETMMIARLLGLKTVF 115 (252)
Q Consensus 97 ~~~~~~~~~~~~~~~p~v~ 115 (252)
...+++..|+|.+.
T Consensus 365 -----~~~~A~k~gIP~vr 378 (422)
T TIGR02015 365 -----LVQFAKEHGIPALY 378 (422)
T ss_pred -----chHHHHHcCCCEEE
Confidence 22357778999876
No 462
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=32.77 E-value=1.9e+02 Score=20.71 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCc-EEEecCc
Q psy8013 16 HIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEIS-IVHGHSA 94 (252)
Q Consensus 16 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~D-vvh~~~~ 94 (252)
=...+.+.+.+.|.++.+.++..+.. .......+.+++.+..++ ++.+-+.
T Consensus 16 Ka~~l~~~~~~~~~~~~~~~p~l~~~----------------------------p~~a~~~l~~~i~~~~~~~~~liGSS 67 (187)
T PF05728_consen 16 KAQALKQYFAEHGPDIQYPCPDLPPF----------------------------PEEAIAQLEQLIEELKPENVVLIGSS 67 (187)
T ss_pred HHHHHHHHHHHhCCCceEECCCCCcC----------------------------HHHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 34667777877777787777753211 012234566777776655 3333333
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEe
Q psy8013 95 FSALAHETMMIARLLGLKTVFTD 117 (252)
Q Consensus 95 ~~~~~~~~~~~~~~~~~p~v~~~ 117 (252)
..++. +..++...++|.|..-
T Consensus 68 lGG~~--A~~La~~~~~~avLiN 88 (187)
T PF05728_consen 68 LGGFY--ATYLAERYGLPAVLIN 88 (187)
T ss_pred hHHHH--HHHHHHHhCCCEEEEc
Confidence 44344 6677778899876543
No 463
>PRK06057 short chain dehydrogenase; Provisional
Probab=32.72 E-value=61 Score=24.05 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=22.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 13 tGasggIG~~~a~~l~~~G~~v~~~~r~ 40 (255)
T PRK06057 13 TGGGSGIGLATARRLAAEGATVVVGDID 40 (255)
T ss_pred ECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4666666778999999999999888654
No 464
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=32.67 E-value=54 Score=18.58 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhcc
Q psy8013 227 VSERTEIVYKRVTQEE 242 (252)
Q Consensus 227 ~a~~~~~~y~~~~~~~ 242 (252)
+|++..++|++.++.+
T Consensus 47 lAerv~~ly~eyi~~k 62 (64)
T PF14894_consen 47 LAERVYDLYNEYIEKK 62 (64)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4445555555555443
No 465
>PLN02240 UDP-glucose 4-epimerase
Probab=32.66 E-value=50 Score=25.95 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
.||.+..-..+++.|.+.|++|.++..
T Consensus 11 tGatG~iG~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 11 TGGAGYIGSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 466667777899999999999988864
No 466
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=32.55 E-value=66 Score=23.26 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=20.4
Q ss_pred CCCCcHHHHHHHHHHHHHHCCcEEEEEec
Q psy8013 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTH 36 (252)
Q Consensus 8 P~~GG~~~~~~~l~~~L~~~G~~V~v~~~ 36 (252)
+...|....+..++..|++.|+.|.+.-.
T Consensus 21 ~d~~G~~~~~~~~ad~lA~~Gy~v~~pD~ 49 (218)
T PF01738_consen 21 HDIFGLNPNIRDLADRLAEEGYVVLAPDL 49 (218)
T ss_dssp -BTTBS-HHHHHHHHHHHHTT-EEEEE-C
T ss_pred cCCCCCchHHHHHHHHHHhcCCCEEeccc
Confidence 34568888999999999999976665443
No 467
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=32.51 E-value=1.2e+02 Score=23.26 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=19.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEe
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLT 35 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~ 35 (252)
.||.+..-..+++.|.++| +|+.+.
T Consensus 6 tG~~GfiGs~l~~~L~~~g-~V~~~~ 30 (299)
T PRK09987 6 FGKTGQVGWELQRALAPLG-NLIALD 30 (299)
T ss_pred ECCCCHHHHHHHHHhhccC-CEEEec
Confidence 4777777888999999999 565443
No 468
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=32.46 E-value=1.5e+02 Score=19.43 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=40.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.||.... . -...|.+.|....|-+..... . ......+++...+|............+......+.......++=+|
T Consensus 11 ~g~~~~~-~-d~~~L~~~gi~~VI~l~~~~~-~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlV 86 (139)
T cd00127 11 LGSYPAA-S-DKELLKKLGITHVLNVAKEVP-N-ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLV 86 (139)
T ss_pred ECChhHh-c-CHHHHHHcCCCEEEEcccCCC-C-cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Confidence 4555432 2 345677778764444433222 1 2234577788888765432111111111122234444445677788
Q ss_pred EecCch
Q psy8013 90 HGHSAF 95 (252)
Q Consensus 90 h~~~~~ 95 (252)
||....
T Consensus 87 HC~~G~ 92 (139)
T cd00127 87 HCLAGV 92 (139)
T ss_pred ECCCCC
Confidence 998754
No 469
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.44 E-value=72 Score=21.12 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
..+..++..|.++|++|+|.+..
T Consensus 19 ssaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 19 SSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred hHHHHHHHHhhccCccEEEecCH
Confidence 35678999999999999998875
No 470
>PRK06182 short chain dehydrogenase; Validated
Probab=32.42 E-value=58 Score=24.49 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=20.7
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
||....-..+++.|.++|++|.++...
T Consensus 10 GasggiG~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 10 GASSGIGKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 444555667999999999999887764
No 471
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=32.38 E-value=1.4e+02 Score=21.13 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=16.6
Q ss_pred HHHHHHHHHCCcEEEEEeccC
Q psy8013 18 FNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 18 ~~l~~~L~~~G~~V~v~~~~~ 38 (252)
.++.+.|.++|+.+.++|...
T Consensus 98 ~~~L~~L~~~g~~~~i~Sn~~ 118 (198)
T TIGR01428 98 PAGLRALKERGYRLAILSNGS 118 (198)
T ss_pred HHHHHHHHHCCCeEEEEeCCC
Confidence 456778888899999998753
No 472
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=32.36 E-value=57 Score=24.05 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.+.|++|.++...
T Consensus 18 tG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 18 TGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred eCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 4677777888999999999999877654
No 473
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=32.32 E-value=59 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 13 VEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 13 ~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.+..-..++++|.++|++|+++...
T Consensus 213 SG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 213 SGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred cchHHHHHHHHHHHCCCEEEEeCCC
Confidence 4445678999999999999998765
No 474
>PRK12937 short chain dehydrogenase; Provisional
Probab=32.32 E-value=58 Score=23.84 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=22.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 11 tG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 11 TGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 4666777788999999999998776543
No 475
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=32.31 E-value=1.1e+02 Score=23.59 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEeccCCCCcceeeeeCCeEEEEeecccccCCCcccccccchHHHHHHHhhCCCcEE
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV 89 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv 89 (252)
.|+.+..-.+|.+.|. .+++|.-.+... ..+.....+.+++++.+||+|
T Consensus 6 ~G~~GqLG~~L~~~l~-~~~~v~a~~~~~------------------------------~Ditd~~~v~~~i~~~~PDvV 54 (281)
T COG1091 6 TGANGQLGTELRRALP-GEFEVIATDRAE------------------------------LDITDPDAVLEVIRETRPDVV 54 (281)
T ss_pred EcCCChHHHHHHHHhC-CCceEEeccCcc------------------------------ccccChHHHHHHHHhhCCCEE
Confidence 3666667777777776 446665554431 011223457788888999987
Q ss_pred EecCchh---------H--------HHHHHHHHHHhcCCcEEEEecCC
Q psy8013 90 HGHSAFS---------A--------LAHETMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 90 h~~~~~~---------~--------~~~~~~~~~~~~~~p~v~~~h~~ 120 (252)
+...... - .......+++..|.++|+..-+.
T Consensus 55 In~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDy 102 (281)
T COG1091 55 INAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDY 102 (281)
T ss_pred EECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecce
Confidence 5432110 0 01123456777899988765443
No 476
>PRK06398 aldose dehydrogenase; Validated
Probab=32.28 E-value=67 Score=23.99 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=21.5
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.+.|++|.++...
T Consensus 12 tGas~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 12 TGGSQGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred ECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 3555556677999999999999887654
No 477
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=32.28 E-value=72 Score=24.08 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=23.1
Q ss_pred CCCcHH--HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 9 NVGGVE--EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 9 ~~GG~~--~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
..||++ +.+.+||..|+++|++|-++=.+
T Consensus 9 ~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 9 GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 357666 56789999999999998888554
No 478
>PRK10037 cell division protein; Provisional
Probab=32.24 E-value=70 Score=23.87 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=23.2
Q ss_pred CCCcHH--HHHHHHHHHHHHCCcEEEEEecc
Q psy8013 9 NVGGVE--EHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 9 ~~GG~~--~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
..||++ +.+.+|+..|+++|++|-++=.+
T Consensus 9 ~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 9 VRGGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred CCCCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 467776 45689999999999999988554
No 479
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=32.23 E-value=55 Score=25.12 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|.+..-..++..|++.||+|+++...
T Consensus 7 G~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 7 GAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 34455567889999999999999874
No 480
>PRK05875 short chain dehydrogenase; Provisional
Probab=32.19 E-value=63 Score=24.31 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=21.8
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.+++..
T Consensus 13 tGasg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 13 TGGGSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3555566778999999999998887754
No 481
>KOG2803|consensus
Probab=32.12 E-value=57 Score=25.36 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=15.5
Q ss_pred HHHHHHhcCCcEEEEecCC
Q psy8013 102 TMMIARLLGLKTVFTDHSL 120 (252)
Q Consensus 102 ~~~~~~~~~~p~v~~~h~~ 120 (252)
+++-++..|-++|+.+|..
T Consensus 27 aLrQAkalGdkLivGVHsD 45 (358)
T KOG2803|consen 27 ALRQAKALGDKLIVGVHSD 45 (358)
T ss_pred HHHHHHHhCCeEEEEecch
Confidence 4456778899999999987
No 482
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=32.09 E-value=86 Score=21.84 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=24.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 6 ~~P~~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|.+...-+-.++..++..+.+.+.+|+|+|.+
T Consensus 72 ft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD 103 (166)
T PF05991_consen 72 FTKEGETADDYIERLVRELKNRPRQVTVVTSD 103 (166)
T ss_pred ECCCCCCHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 44444556678889999988878899999986
No 483
>PRK07814 short chain dehydrogenase; Provisional
Probab=32.02 E-value=60 Score=24.27 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++..+
T Consensus 16 tGasggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 16 TGAGRGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4555666677999999999999877764
No 484
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=32.01 E-value=82 Score=22.37 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHCCcEEEEEeccC
Q psy8013 15 EHIFNLSQCLLQRGHKVIVLTHSY 38 (252)
Q Consensus 15 ~~~~~l~~~L~~~G~~V~v~~~~~ 38 (252)
..+.++++.|.+.|++|.++.+..
T Consensus 15 ~~~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 15 YKAADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred HHHHHHHHHHHHCCCEEEEEEChh
Confidence 456899999999999999988753
No 485
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=32.00 E-value=64 Score=23.99 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.+++..
T Consensus 18 tGa~g~IG~~la~~l~~~G~~V~~~~r~ 45 (259)
T PRK08213 18 TGGSRGLGLQIAEALGEAGARVVLSARK 45 (259)
T ss_pred ECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4555666678999999999998777654
No 486
>PRK09186 flagellin modification protein A; Provisional
Probab=31.99 E-value=61 Score=23.98 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.+.|++|.+++..
T Consensus 10 tGas~giG~~~a~~l~~~g~~v~~~~r~ 37 (256)
T PRK09186 10 TGAGGLIGSALVKAILEAGGIVIAADID 37 (256)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 3555666778999999999999887654
No 487
>PRK08017 oxidoreductase; Provisional
Probab=31.92 E-value=63 Score=23.90 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=20.8
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
||.+..-..+++.|.++|++|.++..+
T Consensus 9 Gasg~IG~~la~~l~~~g~~v~~~~r~ 35 (256)
T PRK08017 9 GCSSGIGLEAALELKRRGYRVLAACRK 35 (256)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 555556678999999999998777654
No 488
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=31.88 E-value=42 Score=27.00 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.6
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+.+-..++..|.+.||+|+++...
T Consensus 104 iGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 104 VGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred EcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 5778888999999999999999998864
No 489
>PRK07063 short chain dehydrogenase; Provisional
Probab=31.81 E-value=63 Score=24.03 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=21.8
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.++...
T Consensus 13 tGas~gIG~~~a~~l~~~G~~vv~~~r~ 40 (260)
T PRK07063 13 TGAAQGIGAAIARAFAREGAAVALADLD 40 (260)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3555566678999999999998887654
No 490
>PRK06841 short chain dehydrogenase; Provisional
Probab=31.77 E-value=61 Score=23.97 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=22.1
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.+++..
T Consensus 21 tGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 21 TGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3666667788999999999998877654
No 491
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=31.75 E-value=60 Score=25.64 Aligned_cols=28 Identities=25% Similarity=0.022 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..|++.|.++|++|+.+...
T Consensus 21 tGatGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 21 TGVAGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred ECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5888888899999999999999887653
No 492
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=31.74 E-value=1.5e+02 Score=21.22 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=28.0
Q ss_pred HHHHHHhhCCCcEEEecCchhHHHHHHHHHHHhcCCcEEEEec
Q psy8013 76 LVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDH 118 (252)
Q Consensus 76 ~l~~~~~~~~~Dvvh~~~~~~~~~~~~~~~~~~~~~p~v~~~h 118 (252)
.+...++..++|+|-+-....... +..++...+.|+++.-.
T Consensus 41 ~la~~~~~~~~D~Ivg~e~~Gipl--A~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 41 EFARRFKDEGITKILTIEASGIAP--AVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHhccCCCCEEEEEccccHHH--HHHHHHHHCCCEEEEEE
Confidence 344555566899998876555333 66777788999877544
No 493
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=31.69 E-value=65 Score=25.41 Aligned_cols=28 Identities=25% Similarity=0.095 Sum_probs=22.2
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.+.|++|.++...
T Consensus 10 tGatG~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 10 TGHTGFKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred ECCCChhHHHHHHHHHHCCCEEEEEeCC
Confidence 4666666688999999999999887654
No 494
>PRK05693 short chain dehydrogenase; Provisional
Probab=31.66 E-value=62 Score=24.37 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=20.4
Q ss_pred CcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 11 GGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 11 GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
||....-..+++.|.++|++|.+++..
T Consensus 8 GasggiG~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 8 GCSSGIGRALADAFKAAGYEVWATARK 34 (274)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 444555567889999999999887754
No 495
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=31.65 E-value=92 Score=19.18 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 12 GVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 12 G~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
|-.+...+|+..|++.|.+|.++-.+
T Consensus 12 Gkst~~~~la~~~~~~~~~vl~~d~d 37 (104)
T cd02042 12 GKTTTAVNLAAALARRGKRVLLIDLD 37 (104)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 45567889999999999988888665
No 496
>PLN02253 xanthoxin dehydrogenase
Probab=31.49 E-value=63 Score=24.39 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.+.|++|.++...
T Consensus 24 tGas~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 24 TGGATGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred ECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 3566666778999999999999887654
No 497
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=31.47 E-value=58 Score=27.95 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=22.3
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||.+..-..+++.|.+.|++|.++...
T Consensus 86 TGATGgIG~aLAr~LLk~G~~Vval~Rn 113 (576)
T PLN03209 86 AGATGKVGSRTVRELLKLGFRVRAGVRS 113 (576)
T ss_pred ECCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4666666777889999999999988765
No 498
>PRK06197 short chain dehydrogenase; Provisional
Probab=31.44 E-value=61 Score=24.98 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||..-.-..+++.|.++|++|.+++..
T Consensus 22 tGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 22 TGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred cCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 3555566677899999999998887654
No 499
>PRK06196 oxidoreductase; Provisional
Probab=31.40 E-value=63 Score=25.07 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=21.7
Q ss_pred CCcHHHHHHHHHHHHHHCCcEEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~~V~v~~~~ 37 (252)
.||....-..+++.|.++|++|.+++..
T Consensus 32 TGasggIG~~~a~~L~~~G~~Vv~~~R~ 59 (315)
T PRK06196 32 TGGYSGLGLETTRALAQAGAHVIVPARR 59 (315)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3555556677899999999999887654
No 500
>PRK08264 short chain dehydrogenase; Validated
Probab=31.37 E-value=61 Score=23.68 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHHHHHCCc-EEEEEecc
Q psy8013 10 VGGVEEHIFNLSQCLLQRGH-KVIVLTHS 37 (252)
Q Consensus 10 ~GG~~~~~~~l~~~L~~~G~-~V~v~~~~ 37 (252)
.||.+..-..+++.|.++|+ .|.++...
T Consensus 12 tGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 12 TGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred ECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 57777778889999999998 88777654
Done!