RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8013
(252 letters)
>gnl|CDD|99970 cd03796, GT1_PIG-A_like, This family is most closely related to the
GT1 family of glycosyltransferases. Phosphatidylinositol
glycan-class A (PIG-A), an X-linked gene in humans, is
necessary for the synthesis of
N-acetylglucosaminyl-phosphatidylinositol, a very early
intermediate in glycosyl phosphatidylinositol
(GPI)-anchor biosynthesis. The GPI-anchor is an
important cellular structure that facilitates the
attachment of many proteins to cell surfaces. Somatic
mutations in PIG-A have been associated with Paroxysmal
Nocturnal Hemoglobinuria (PNH), an acquired
hematological disorder.
Length = 398
Score = 352 bits (905), Expect = e-122
Identities = 129/193 (66%), Positives = 157/193 (81%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKT 60
MVSDFFYPN+GGVE HI+ LSQCL++RGHKV+V+TH+Y +RVGIRY+TNGLKVYY P
Sbjct: 4 MVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVV 63
Query: 61 FYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120
FYNQS LPT + PL+R+IL+RE I+IVHGH AFSALAHE ++ AR +GLKTVFTDHSL
Sbjct: 64 FYNQSTLPTFFGTFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSL 123
Query: 121 FGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFV 180
FGFAD+S+I TNK L SLA +H ICVSH KENTVLRA ++ VSVIPNAVD++ F
Sbjct: 124 FGFADASSIHTNKLLRFSLADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFT 183
Query: 181 PDVSRRSHNETLI 193
PD S+R +++ I
Sbjct: 184 PDPSKRDNDKITI 196
Score = 59.9 bits (146), Expect = 2e-10
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 190 ETLIAGIESAISDLKNGRAISPFKCHETVKSLYNWVDVSERTEIVYKRVTQEETKSVSEI 249
E+++ +E AIS L+ G+ P+ H VK +Y+W DV++RTE VY R+ Q S+ E
Sbjct: 321 ESIVRKLEEAISILRTGK-HDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQTPNLSLLER 379
Query: 250 LK 251
LK
Sbjct: 380 LK 381
>gnl|CDD|191988 pfam08288, PIGA, PIGA (GPI anchor biosynthesis). This domain is
found on phosphatidylinositol
n-acetylglucosaminyltransferase proteins. These proteins
are involved in GPI anchor biosynthesis and are
associated with disease the paroxysmal nocturnal
haemoglobinuria.
Length = 90
Score = 166 bits (423), Expect = 3e-53
Identities = 57/90 (63%), Positives = 66/90 (73%)
Query: 36 HSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAF 95
H+Y DR G+RY+TNGLKVYY P Y Q PT + PL R+IL+RE I IVHGH A
Sbjct: 1 HAYGDRTGVRYLTNGLKVYYVPFLVIYRQVTFPTFFGTFPLFRNILIRERIDIVHGHGAL 60
Query: 96 SALAHETMMIARLLGLKTVFTDHSLFGFAD 125
S LAHE ++ AR +GLKTVFTDHSLFGFAD
Sbjct: 61 STLAHEAILHARTMGLKTVFTDHSLFGFAD 90
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the
GT1 family of glycosyltransferases and named after YqgM
in Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in certain bacteria and archaea.
Length = 374
Score = 94.8 bits (236), Expect = 1e-22
Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 10/191 (5%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKT 60
+V+ + P+VGG E H+ L++ L RGH+V VLT + + V P+
Sbjct: 4 LVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLR 63
Query: 61 FYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120
+L + +R +L RE +VH H + LA + ARLLG+ V T H L
Sbjct: 64 VRRLLLLLLLA---LRLRRLLRRERFDVVHAHDWLALLA--AALAARLLGIPLVLTVHGL 118
Query: 121 -----FGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVD 175
+ +L + I VS +E V ++VIPN VD
Sbjct: 119 EFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVD 178
Query: 176 TTVFVPDVSRR 186
T F P
Sbjct: 179 TERFRPAPRAA 189
>gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the
GT1 family of glycosyltransferases.
UDP-glucose-diacylglycerol glucosyltransferase (UGDG;
also known as 1,2-diacylglycerol 3-glucosyltransferase)
catalyzes the transfer of glucose from UDP-glucose to
1,2-diacylglycerol forming
3-D-glucosyl-1,2-diacylglycerol.
Length = 374
Score = 71.9 bits (177), Expect = 2e-14
Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 34/200 (17%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSY----KDRVGIRYMTNGLKVYYC 56
+ +D + P V GV I L++ L +RGH+V V+ SY ++ + +
Sbjct: 4 IFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVR-----PFRV 58
Query: 57 PIKTFYNQSILPTMVCSIPLVRHILL---REEISIVHGHSAFSA--LAHETMMIARLLGL 111
P + + + +P+ R +++ IVH H+ FS L + +AR LG+
Sbjct: 59 PTFKYPDFRLP------LPIPRALIIILKELGPDIVHTHTPFSLGLLG---LRVARKLGI 109
Query: 112 KTVFTDHSLF--------GFADSSAIVTNKCLEISLAG-CNHCICVSHIGKENTVLRARV 162
V T H+++ + V + L C+ I S + +LR
Sbjct: 110 PVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIAD--LLREYG 167
Query: 163 NHYNVSVIPNAVDTTVFVPD 182
+ VIP +D F P
Sbjct: 168 VKRPIEVIPTGIDLDRFEPV 187
>gnl|CDD|222130 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4.
Length = 171
Score = 66.3 bits (162), Expect = 1e-13
Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 22/185 (11%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKT 60
++++ P GGVE + L++ L +RGH+V V+ + + V K
Sbjct: 2 LITNHHLPKFGGVERVVLELARALARRGHEVTVVAPELGRPLEEELGVILVSVPGLSFKR 61
Query: 61 FYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHS- 119
P V ++ + L +E +VH H + + V T H
Sbjct: 62 AL---RSPAFVFALRRL---LKKERFDLVHSHHPAA---------LLFADVPAVLTVHGT 106
Query: 120 -LFGFADSSA----IVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAV 174
F SS ++ + I VS + + R V + VIPN V
Sbjct: 107 WPLRFIYSSLSPYEVLELPLERRLFRRADAVIAVSEEVADE-LARYGVPEEKIRVIPNGV 165
Query: 175 DTTVF 179
DT F
Sbjct: 166 DTERF 170
>gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to the
GT1 family of glycosyltransferases. wbuB in E. coli is
involved in the biosynthesis of the O26 O-antigen. It
has been proposed to function as an
N-acetyl-L-fucosamine (L-FucNAc) transferase.
Length = 394
Score = 66.5 bits (163), Expect = 1e-12
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 26/216 (12%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLT---HSYKDRVGIRYMT---NGLKVY 54
++S +F P +GG L++ L++RGH+V V+T + ++ Y +G++V+
Sbjct: 4 ILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVH 63
Query: 55 YCPIKTFYNQSILPTMVCSIPLVRHILL-----REEISIVHGHS--AFSALAHETMMIAR 107
P+ + +L ++ + LL R ++ S ALA +++AR
Sbjct: 64 RVPLPPYKKNGLLKRLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALA--ALLLAR 121
Query: 108 LLGLKTVFTDHSLF-------GFADSSAIVTN--KCLE-ISLAGCNHCICVSHIGKENTV 157
L G V L+ G + +++ + LE + + + +S G +
Sbjct: 122 LKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRADAIVVISP-GMREYL 180
Query: 158 LRARVNHYNVSVIPNAVDTTVFVPDVSRRSHNETLI 193
+R V +SVIPN VD +F P + S + L
Sbjct: 181 VRRGVPPEKISVIPNGVDLELFKPPPADESLRKELG 216
>gnl|CDD|222237 pfam13579, Glyco_trans_4_4, Glycosyl transferase 4-like domain.
Length = 158
Score = 60.1 bits (146), Expect = 2e-11
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTM 70
GG E ++ L++ L RGH+V V+T +G++V+ P+ + LP
Sbjct: 1 GGAERYVLELARALAARGHEVTVVTPRG-PPGRPELEEDGVRVHRLPV---PRRPSLPGD 56
Query: 71 VCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAI- 129
+ ++ +R +L RE +VH H + L + AR G+ V T H L S
Sbjct: 57 LRALRRLRRLLRRERPDVVHAHGPLAGLL--ARLAARRRGVPVVVTPHGLALRQGSGLKR 114
Query: 130 -VTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPN 172
+ L + + VS E + V V V+PN
Sbjct: 115 RLARALERRLLRRADAVVAVSEAEAE-LLRALGVPAARVVVVPN 157
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the
GT1 family of glycosyltransferases. wlbH in Bordetella
parapertussis has been shown to be required for the
biosynthesis of a trisaccharide that, when attached to
the B. pertussis lipopolysaccharide (LPS) core (band B),
generates band A LPS.
Length = 377
Score = 61.6 bits (150), Expect = 4e-11
Identities = 42/185 (22%), Positives = 66/185 (35%), Gaps = 11/185 (5%)
Query: 6 FYPNV--GGVEEHIFNLSQCLLQRGHKVIVLT-----HSYKDRVGIRYMTNGLKVYYCPI 58
YP GG + L++ L +RG +V VL D + R + P+
Sbjct: 7 LYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPV 66
Query: 59 KTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDH 118
+L + L L R ++H H A+ ++ R LG+ V T H
Sbjct: 67 VPLLKGPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFA-AALLKRKLGIPLVVTLH 125
Query: 119 -SLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTT 177
S ++ L + I VS + + ++ V+VIPN VDT
Sbjct: 126 GSDVNLLPRKRLLRALLRRA-LRRADAVIAVSEALADE-LKALGIDPEKVTVIPNGVDTE 183
Query: 178 VFVPD 182
F P
Sbjct: 184 RFSPA 188
>gnl|CDD|99969 cd03795, GT1_like_4, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP-linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria and eukaryotes.
Length = 357
Score = 56.8 bits (138), Expect = 2e-09
Identities = 49/199 (24%), Positives = 71/199 (35%), Gaps = 44/199 (22%)
Query: 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTF 61
V F+ P+ GG+E+ I +L++ L RG +V VL S + G NG +V P
Sbjct: 5 VGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCAS-PEPKGRDEERNGHRVIRAP---- 59
Query: 62 YNQSILPTMVCSIPLVRHIL-----LREEISIVHGHSAFSALAHETMMIARLL----GLK 112
S+L V S P L ++ ++H H + LL
Sbjct: 60 ---SLL--NVASTPFSPSFFKQLKKLAKKADVIHLHFPN------PLADLALLLLPRKKP 108
Query: 113 TVFTDHSLFGFADSSAIVTNKCL--------EISLAGCNHCICVSHIGKENT-VLRARVN 163
V HS D IV K L L + + S E + VLR +
Sbjct: 109 VVVHWHS-----D---IVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRFRD 160
Query: 164 HYNVSVIPNAVDTTVFVPD 182
V VIP +D +
Sbjct: 161 --KVRVIPLGLDPARYPRP 177
>gnl|CDD|99989 cd03819, GT1_WavL_like, This family is most closely related to the
GT1 family of glycosyltransferases. WavL in Vibrio
cholerae has been shown to be involved in the
biosynthesis of the lipopolysaccharide core.
Length = 355
Score = 53.0 bits (128), Expect = 4e-08
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 20/176 (11%)
Query: 9 NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILP 68
GGVE L++ L++RGH+ +V + + + G + P F +++ L
Sbjct: 8 ESGGVERGTLELARALVERGHRSLVASAGGRLVAELEAE--GSRHIKLP---FISKNPLR 62
Query: 69 TMVCSIPLVRHILLREEISIVHGHSAFSA-LAHETMMIARLLGLKTVFTDHSLFGFADS- 126
++ L R ++ E++ IVH S A A+ + AR V T H +
Sbjct: 63 ILLNVARLRR-LIREEKVDIVHARSRAPAWSAY---LAARRTRPPFVTTVHGFYSVNFRY 118
Query: 127 SAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPD 182
+AI+ + +A N I HI + V R + VIP VD F P
Sbjct: 119 NAIMARG--DRVIAVSN-FI-ADHIRENYGVDPDR-----IRVIPRGVDLDRFDPG 165
>gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the
GT1 family of glycosyltransferases. Bme6 in Brucella
melitensis has been shown to be involved in the
biosynthesis of a polysaccharide.
Length = 375
Score = 51.9 bits (125), Expect = 7e-08
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 1/118 (0%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKT 60
V F P GG + NLS+ L + GH+V V T + NG+ V I
Sbjct: 4 HVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGD-PLLVALNGVPVKLFSINV 62
Query: 61 FYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDH 118
Y ++ + L L E IVH H +S + AR G+ V + H
Sbjct: 63 AYGLNLARYLFPPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPH 120
>gnl|CDD|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer
membrane].
Length = 381
Score = 52.3 bits (124), Expect = 8e-08
Identities = 43/201 (21%), Positives = 72/201 (35%), Gaps = 19/201 (9%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKT 60
++ + P VGG+E ++ L++ L G VL + + G++V P +
Sbjct: 5 ILIIYPPPRVGGIERYVLELAKALRLLGRGHEVLVIAPEK-----LEGLGIEVLRLPSVS 59
Query: 61 FYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHET-MMIARLLGLKTVFTDHS 119
I+ + L+ + I+H HS A +++ +LLG+ V T H
Sbjct: 60 LPLL-IVRLRPALLRLLLLLKRLLPYDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHG 118
Query: 120 LFGFADSSAIVTNKCLEISLAG----------CNHCICVSHIGKENTVLRARVNHYNVSV 169
L + + L + I VS KE +L A + V
Sbjct: 119 LIPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVIAVSPALKE--LLEALGVPNKIVV 176
Query: 170 IPNAVDTTVFVPDVSRRSHNE 190
IPN +DT F P
Sbjct: 177 IPNGIDTEKFAPARIGLLPEG 197
>gnl|CDD|99975 cd03802, GT1_AviGT4_like, This family is most closely related to
the GT1 family of glycosyltransferases. aviGT4 in
Streptomyces viridochromogenes has been shown to be
involved in biosynthesis of oligosaccharide antibiotic
avilamycin A. Inactivation of aviGT4 resulted in a
mutant that accumulated a novel avilamycin derivative
lacking the terminal eurekanate residue.
Length = 335
Score = 51.1 bits (123), Expect = 1e-07
Identities = 31/183 (16%), Positives = 50/183 (27%), Gaps = 27/183 (14%)
Query: 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSIL 67
P GG E + L++ L+ RGH+V + T V P +
Sbjct: 16 PAYGGTERVVAALTEGLVARGHEVTLFASGDSK-------TAAPLVPVVPEPLRLDAPGR 68
Query: 68 PTMVCSIPLVRHILL-REEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADS 126
+ L + IVH HS L AR L + V T H
Sbjct: 69 DRAEAEALALAERALAAGDFDIVHNHSLHLPLP-----FARPLPVPVVTTLHGPPDPELL 123
Query: 127 SAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYN-VSVIPNAVDTTVFVPDVSR 185
+ + +S R V+ + N +D + +
Sbjct: 124 KLY-------YAARPDVPFVSISDA------QRRPWPPLPWVATVHNGIDLDDYPFRGPK 170
Query: 186 RSH 188
+
Sbjct: 171 GDY 173
>gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the
GT1 family of glycosyltransferases. WabH in Klebsiella
pneumoniae has been shown to transfer a GlcNAc residue
from UDP-GlcNAc onto the acceptor GalUA residue in the
cellular outer core.
Length = 353
Score = 50.0 bits (120), Expect = 3e-07
Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 15/170 (8%)
Query: 11 GGVEEHIFNLSQCLLQRGHKV--IVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILP 68
GG E + NL+ L +RG+ V +VL + + V +K+ +
Sbjct: 12 GGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLL--- 68
Query: 69 TMVCSIPLVRHILLREEISIVHGHSAFSA--LAHETMMIARLLGLKTVFTDHSLFGFADS 126
+I +R +L +E+ +V H + LA +A LG K + +H+
Sbjct: 69 ----AILRLRRLLRKEKPDVVISHLTTTPNVLAL----LAARLGTKLIVWEHNSLSLELK 120
Query: 127 SAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDT 176
+ + + + VS KE+ + + + VI N +D
Sbjct: 121 RKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDI 170
>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the
GT1 family of glycosyltransferases. WbnK in Shigella
dysenteriae has been shown to be involved in the type 7
O-antigen biosynthesis.
Length = 365
Score = 46.1 bits (110), Expect = 8e-06
Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 25/188 (13%)
Query: 9 NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILP 68
+VGG E + L + L + + +V++ + + +G G+ VY + P
Sbjct: 10 DVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPGRPD---P 66
Query: 69 TMVCSIPLVRHILLREEISIVHG---HSAFSALAHETMMIARLLGLKTVFT--DHSLFGF 123
+ + ++ R +VH H+ + ARL G+ V HS
Sbjct: 67 GA---LLRLYKLIRRLRPDVVHTWMYHADLYGG-----LAARLAGVPPVIWGIRHSDLDL 118
Query: 124 ADSSAIVTNK-CLEISLAGCNHCICVSHIGKENTVLRARVNHYN---VSVIPNAVDTTVF 179
S + + +S + S E + Y + VIPN VDT F
Sbjct: 119 GKKSTRLVARLRRLLSS-FIPLIVANSAAAAE----YHQAIGYPPKKIVVIPNGVDTERF 173
Query: 180 VPDVSRRS 187
PD+ R+
Sbjct: 174 SPDLDARA 181
>gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related
to the GT1 family of glycosyltransferases. The
sucrose-phosphate synthases in this family may be unique
to plants and photosynthetic bacteria. This enzyme
catalyzes the synthesis of sucrose 6-phosphate from
fructose 6-phosphate and uridine 5'-diphosphate-glucose,
a key regulatory step of sucrose metabolism. The
activity of this enzyme is regulated by phosphorylation
and moderated by the concentration of various
metabolites and light.
Length = 398
Score = 44.1 bits (105), Expect = 3e-05
Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 38/200 (19%)
Query: 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDR-VGIRYMTNGLKVYYCP--IKTFYNQ 64
+ GG ++ L++ L + GH+V + T D I + G++V P + +
Sbjct: 18 ADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPK 77
Query: 65 SILPTMVCSIPLVRHIL---LREEIS--IVHGHSAFSALAHETMMIARLLGLKTVFTDHS 119
L + +L RE ++H H S L +++AR LG+ V T HS
Sbjct: 78 EELWPYLDE--FADDLLRFLRREGGRPDLIHAHYWDSGLV--ALLLARRLGIPLVHTFHS 133
Query: 120 LFGFADSSAIVTNKCL---------------EISLAGCNHCICVSHIGKENTVLRARVNH 164
L V + L E L + I + +E L +
Sbjct: 134 L-------GAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTP--QEAEELYSLYGA 184
Query: 165 Y--NVSVIPNAVDTTVFVPD 182
Y + V+P VD F P
Sbjct: 185 YPRRIRVVPPGVDLERFTPY 204
>gnl|CDD|100001 cd04955, GT1_like_6, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
certain bacteria and Archaea.
Length = 363
Score = 43.0 bits (102), Expect = 6e-05
Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 36/195 (18%)
Query: 7 YPNV-GGVEEHIFNLSQCLLQRGHKVIVLTHS-YKDRVGIRYMTNGLKVYYCP---IKTF 61
P GG E + L+ L+ RGH+V V S Y + Y NG+++ + P I
Sbjct: 10 IPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKETEY--NGVRLIHIPAPEIGGL 67
Query: 62 YNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL- 120
+I+ ++ + H L + I H H+ A+A ++ RL G K V L
Sbjct: 68 --GTIIYDILA----ILHALFV-KRDIDHVHALGPAIAPFLPLL-RLKGKKVVVNMDGLE 119
Query: 121 -----FGFADSSAIVTNKCLEISLAGCNHCICVS-----HIGKENTVLRARVNHYNVSVI 170
+G + + L + A + I S ++ ++ R + Y I
Sbjct: 120 WKRAKWGRPAKRYLKFGEKLAVKFA--DRLIADSPGIKEYLKEK----YGRDSTY----I 169
Query: 171 PNAVDTTVFVPDVSR 185
P D V +
Sbjct: 170 PYGADHVVSSEEDEI 184
>gnl|CDD|99983 cd03812, GT1_CapH_like, This family is most closely related to the
GT1 family of glycosyltransferases. capH in
Staphylococcus aureus has been shown to be required for
the biosynthesis of the type 1 capsular polysaccharide
(CP1).
Length = 358
Score = 43.0 bits (102), Expect = 7e-05
Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 23/186 (12%)
Query: 9 NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTN-GLKVYYCPIKTFYNQSIL 67
N GG+E I N + L + + L S ++ + G K+YY P + ++ L
Sbjct: 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPAR---KKNPL 66
Query: 68 PTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSS 127
L++ + IVH H + ++ ++ A+ G+K HS S
Sbjct: 67 KYFKKLYKLIKK----NKYDIVHVHGSSASGF--ILLAAKKAGVKVRIA-HS---HNTSD 116
Query: 128 AIVTNKCLEISLAG-------CNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFV 180
+ K + + S + L +V + VIPN +D F+
Sbjct: 117 SHDKKKKILKYKVLRKLINRLATDYLACSEEAGKW--LFGKVKNKKFKVIPNGIDLEKFI 174
Query: 181 PDVSRR 186
+ R
Sbjct: 175 FNEEIR 180
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 41.8 bits (98), Expect = 1e-04
Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 37/140 (26%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKT 60
+VS P GGVE + +L++ L +RGH+V V+
Sbjct: 3 LVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVALLLL--------------------- 41
Query: 61 FYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120
L+ IL + +VH H + A ++ ARLLG+ V T H +
Sbjct: 42 ---------------LLLRILRGFKPDVVHAHGYYPAPLA-LLLAARLLGIPLVLTVHGV 85
Query: 121 FGFADSSAIVTNKCLEISLA 140
++ L I LA
Sbjct: 86 NRSLLEGVPLSLLALSIGLA 105
>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the
GT1 family of glycosyltransferases. cap1E in
Streptococcus pneumoniae is required for the synthesis
of type 1 capsular polysaccharides.
Length = 359
Score = 40.6 bits (96), Expect = 4e-04
Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 35/189 (18%)
Query: 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPT- 69
GG+ L + L G++V V+ + + + G+KV P+ + I P
Sbjct: 10 GGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEAL--GVKVIPIPLDR---RGINPFK 64
Query: 70 -MVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSA 128
+ + L R +L +E IVH H+ + + ARL G+ V GF +S
Sbjct: 65 DLKALLRLYR-LLRKERPDIVHTHTPKPGIL--GRLAARLAGVPKVIYTVHGLGFVFTSG 121
Query: 129 IVTNK---CLE-ISLAGCNHCICVSH-----------IGKENTVLRARVNHYNVSVIPNA 173
+ + LE ++L + I + I K+ TVL + +
Sbjct: 122 GLKRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVL----------IPGSG 171
Query: 174 VDTTVFVPD 182
VD F P
Sbjct: 172 VDLDRFSPS 180
>gnl|CDD|99972 cd03799, GT1_amsK_like, This is a family of GT1
glycosyltransferases found specifically in certain
bacteria. amsK in Erwinia amylovora, has been reported
to be involved in the biosynthesis of amylovoran, a
exopolysaccharide acting as a virulence factor.
Length = 355
Score = 40.6 bits (96), Expect = 4e-04
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 9/115 (7%)
Query: 76 LVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCL 135
++ L R I +H H + M+ +RL G+ FT H D L
Sbjct: 70 VLARELRRLGIDHIHAHFGTTPATV-AMLASRLGGIPYSFTAHG----KDIFRSPDAIDL 124
Query: 136 EISLAGCNHCICVSHIGKENTVLRARVNHY--NVSVIPNAVDTTVFVPDVSRRSH 188
+ LA + + +S ++ L + + V+ VD F P
Sbjct: 125 DEKLARADFVVAISEYNRQ--QLIRLLGCDPDKIHVVHCGVDLERFPPRPPPPPG 177
>gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the
GT1 family of glycosyltransferases. ExpE7 in
Sinorhizobium meliloti has been shown to be involved in
the biosynthesis of galactoglucans (exopolysaccharide
II).
Length = 359
Score = 39.6 bits (93), Expect = 0.001
Identities = 42/211 (19%), Positives = 64/211 (30%), Gaps = 35/211 (16%)
Query: 1 MVSDFFYPN-VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIK 59
+V+ + P VGG E +L++ L +RGH+V VLT D G+ VY PI
Sbjct: 4 VVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGE-DPPRQDKEVIGVVVYGRPID 62
Query: 60 TFYNQSILPTM--------VCSIPLVRHILLREEISIVHGHSA--FSALAHETMMIARLL 109
++ + + +L +VH H AR
Sbjct: 63 EVLRSALPRDLFHLSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILR---AARDR 119
Query: 110 GLKTVFTDHSLFGFAD-SSAIVTNKCLEISLAGCNHCICVSH----IGKENTVLRARVNH 164
G+ V T H + I+ S N + +
Sbjct: 120 GIPIVLTLHDYWLICPRQGLFKKGGDAVIA---------PSRFLLDRYVANGLFAEK--- 167
Query: 165 YNVSVIPNAVDTTVFVPDVSRRSHNETLIAG 195
+SVI N +D R L G
Sbjct: 168 --ISVIRNGIDLDRA-KRPRRAPPGGRLRFG 195
>gnl|CDD|99981 cd03809, GT1_mtfB_like, This family is most closely related to the
GT1 family of glycosyltransferases. mtfB
(mannosyltransferase B) in E. coli has been shown to
direct the growth of the O9-specific polysaccharide
chain. It transfers two mannoses into the position 3 of
the previously synthesized polysaccharide.
Length = 365
Score = 39.7 bits (93), Expect = 0.001
Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 17/187 (9%)
Query: 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTF 61
G+ + L + LL+ + ++L + + + L++ +
Sbjct: 6 ARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRL 65
Query: 62 YNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLF 121
+ R +LL + ++H H T + RL G+ V T H L
Sbjct: 66 LWGLLFL----LRAGDRLLLLLLGLDLLHS-------PHNTAPLLRLRGVPVVVTIHDLI 114
Query: 122 ------GFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVD 175
F+ + L +L + I VS K + + V + VIP VD
Sbjct: 115 PLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVD 174
Query: 176 TTVFVPD 182
P
Sbjct: 175 PRFRPPP 181
>gnl|CDD|99985 cd03814, GT1_like_2, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria and eukaryotes.
Length = 364
Score = 34.5 bits (80), Expect = 0.042
Identities = 48/202 (23%), Positives = 69/202 (34%), Gaps = 33/202 (16%)
Query: 2 VSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYY--CPIK 59
V+D F P V GV + L + L RGH+V+V+ + V P
Sbjct: 5 VTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRE--SEGPARVVPVPSVPLP-- 60
Query: 60 TFYNQSILPTMVCSIPLVRHILLREEISIVH----GHSAFSALAHETMMIARLLGLKTVF 115
Y + L + VR +L +VH G +AL AR LG+ V
Sbjct: 61 -GYPEIRLA--LPPRRRVRRLLDAFAPDVVHIATPGPLGLAALR-----AARRLGIPVVT 112
Query: 116 TDHSLFGFADSSAIVTNKCLEISL--------AGCNHCICVSHIGKENTVLRARVNHYNV 167
+ H+ F + L + + S + LRAR V
Sbjct: 113 SYHTD--FPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLAD--ELRAR-GFRRV 167
Query: 168 SVIPNAVDTTVFVPDVSRRSHN 189
+ P VDT +F P RR
Sbjct: 168 RLWPRGVDTELFHP--RRRDEA 187
>gnl|CDD|171894 PRK13195, PRK13195, pyrrolidone-carboxylate peptidase; Provisional.
Length = 222
Score = 32.3 bits (73), Expect = 0.18
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 142 CNHCI--CVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDVSRRSHNETLIAGIESA 199
CNH + + H+ ++ +RA H A+D + VP +S ++ + AGIE+A
Sbjct: 146 CNHLMYGVLHHLAQKGLPVRAGWIHLPCLPSVAALDHNLGVPSMSVQTAVAGVTAGIEAA 205
Query: 200 ISDLKNGRAISP 211
I + R P
Sbjct: 206 IRQSADIREPIP 217
>gnl|CDD|234438 TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosaminyl L-malate
synthase BshA. Members of this protein family are BshA,
a glycosyltransferase required for bacillithiol
biosynthesis. This enzyme combines UDP-GlcNAc and
L-malate to form N-acetyl-alpha-D-glucosaminyl L-malate
synthase. Bacillithiol is a low-molecular-weight thiol,
an analog of glutathione and mycothiol, and is found
largely in the Firmicutes [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 374
Score = 31.4 bits (72), Expect = 0.38
Identities = 50/228 (21%), Positives = 81/228 (35%), Gaps = 34/228 (14%)
Query: 7 YPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG-----IRYM---TNGLKVYYCPI 58
YP GG L + L +RGH+V +T S R+ I + N ++ P
Sbjct: 8 YPTYGGSGVVATELGKALAERGHEVHFITSSQPFRLEKFHPNIFFHEVEVNQYPLFQYP- 66
Query: 59 KTFYNQSILPTMVCSIPLVRHILLREEISIVHGH----SAFSALAHETMMIARLLGLKTV 114
Y+ ++ + + E++ ++H H A +A M+ + + V
Sbjct: 67 --PYDLALASKIA-------EVAKEEKLDLLHVHYAIPHAIAAYLARQMLGKEGIDIPIV 117
Query: 115 FTDH----SLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVI 170
T H +L G S +E S + VS KE T ++ + VI
Sbjct: 118 TTLHGTDITLVGADPSFKPAVRFSIEKS----DGVTAVSESLKEETYELFDIDK-PIEVI 172
Query: 171 PNAVDTTVFVPDVSRRSHNETLIAGIESAISDLKNGRAISPFKCHETV 218
PN VDT + + E + + N R P K E V
Sbjct: 173 PNFVDTDRYRRKNDPALKRKLGAPEDEKVLIHISNFR---PVKRVEDV 217
>gnl|CDD|100003 cd05844, GT1_like_7, Glycosyltransferases catalyze the transfer of
sugar moieties from activated donor molecules to
specific acceptor molecules, forming glycosidic bonds.
The acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 367
Score = 30.3 bits (69), Expect = 0.84
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 75 PLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDH------SLFGFADSSA 128
P +R +L R +VH H F + + +AR LG+ V T H SL S
Sbjct: 72 PQLRRLLRRHRPDLVHAHFGFDGV--YALPLARRLGVPLVVTFHGFDATTSLALLLRSRW 129
Query: 129 IVT---NKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPD 182
+ + L A I VS ++ +L V V P VDT F P
Sbjct: 130 ALYARRRRRLARRAALF---IAVSQFIRDR-LLALGFPPEKVHVHPIGVDTAKFTPA 182
>gnl|CDD|99994 cd03825, GT1_wcfI_like, This family is most closely related to the
GT1 family of glycosyltransferases. wcfI in Bacteroides
fragilis has been shown to be involved in the capsular
polysaccharide biosynthesis.
Length = 365
Score = 30.3 bits (69), Expect = 1.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 164 HYNVSVIPNAVDTTVFVP 181
+ VIPN +DTT+F P
Sbjct: 158 GIPIEVIPNGIDTTIFRP 175
>gnl|CDD|100002 cd04962, GT1_like_5, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria, while some of them are also found in
Archaea and eukaryotes.
Length = 371
Score = 28.4 bits (64), Expect = 3.9
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 25/194 (12%)
Query: 7 YPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYN--- 63
YP GG L + L +RGH+V +T S R+ Y N +++ ++
Sbjct: 8 YPTYGGSGVVATELGKALARRGHEVHFITSSRPFRL-DEYSPN---IFFHEVEVPQYPLF 63
Query: 64 QSILPTMVCSIPLVRHILLREEISIVHGH----SAFSA-LAHETMMIARLLGLKTVFTDH 118
Q + + + + R ++ ++H H A +A LA E I L V T H
Sbjct: 64 QYPPYDLALASKIAE-VAKRYKLDLLHVHYAVPHAVAAYLARE---ILGKKDLPVVTTLH 119
Query: 119 ----SLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAV 174
+L G S T +E S + VS ++ T + + VIPN V
Sbjct: 120 GTDITLVGQDPSFQPATRFSIEKS----DGVTAVSESLRQETYELFDIT-KEIEVIPNFV 174
Query: 175 DTTVFVPDVSRRSH 188
D F P
Sbjct: 175 DEDRFRPKPDEALK 188
>gnl|CDD|216156 pfam00857, Isochorismatase, Isochorismatase family. This family
are hydrolase enzymes.
Length = 173
Score = 27.7 bits (62), Expect = 4.7
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 136 EISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDT 176
+ LAG +CV +T A Y V V+ +A +
Sbjct: 113 TLVLAGVATDVCV-----LSTARDAFDRGYEVVVVSDACAS 148
>gnl|CDD|100000 cd04951, GT1_WbdM_like, This family is most closely related to the
GT1 family of glycosyltransferases and is named after
WbdM in Escherichia coli. In general
glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
bacteria.
Length = 360
Score = 28.0 bits (63), Expect = 5.1
Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 52/196 (26%)
Query: 11 GGVEEHIFNLSQCLLQRGHKV--IVLTH--SYKDRVGIRYMTNGLKVYYCPIKTFYNQSI 66
GG E+ + +L+ + +GH+V I LT K + + N L + K
Sbjct: 12 GGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPIDATIILN-LNM----SKNP----- 61
Query: 67 LPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLL-----GLKTVFTDHS-- 119
+ + ++ +R IL + + +VH H + H + ARLL + T HS
Sbjct: 62 -LSFLLALWKLRKILRQFKPDVVHAH-----MFHAN-IFARLLRLFLPSPPLICTAHSKN 114
Query: 120 --------LFGFADS-SAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVI 170
+ D S + TN VS + + N V+
Sbjct: 115 EGGRLRMLAYRLTDFLSDLTTN---------------VSKEALDYFIASKAFNANKSFVV 159
Query: 171 PNAVDTTVFVPDVSRR 186
N +DT F D +RR
Sbjct: 160 YNGIDTDRFRKDPARR 175
>gnl|CDD|234448 TIGR04047, MSMEG_0565_glyc, glycosyltransferase, MSMEG_0565 family.
A conserved gene cluster found sporadically from
Actinobacteria to Proteobacteria to Cyanobacteria
features a radical SAM protein, an N-acetyltransferase,
an oxidoreductase, and two additional proteins whose
functional classes are unclear. The metabolic role of
the cluster is probably biosynthetic. This
glycosyltransferase, named from member MSMEG_0565 from
Mycobacterium smegmatis, occurs in most but not all
instances of the cluster [Unknown function, Enzymes of
unknown specificity].
Length = 373
Score = 27.7 bits (62), Expect = 5.9
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 88 IVHGHSAFSALAHETMMIARLLGLKTVF--TDHSLFGFADSSAIVTNKCLEISLAGCNHC 145
+VH S A + R GL F T H L F D C E ++ +
Sbjct: 89 VVHAQDCISGNA---LATLRAEGLIPGFVRTVHHLDDFDDPRLA---ACQERAIVEADAV 142
Query: 146 ICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVP 181
+CVS LRA + +V+PN VD F P
Sbjct: 143 LCVSAAWAAE--LRAE-WGIDATVVPNGVDAARFSP 175
>gnl|CDD|234452 TIGR04063, stp3, PEP-CTERM/exosortase A-associated
glycosyltransferase, Daro_2409 family.
PEP-CTERM/exosortase is a protein-sorting system
associated with exopolysaccharide production. Members of
this protein family are group 1 glycosyltransferases
(see pfam00534) in which the overwhelming majority occur
in species with the EpsH1 form of exosortase (see
TIGR03109), and usually co-clustered with the
exosortase. A typical member is Daro_2409 from
Dechloromonas aromatica RCB.
Length = 397
Score = 27.6 bits (62), Expect = 6.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 167 VSVIPNAVDTTVFVPDVSR 185
++VIPNAVD +F R
Sbjct: 182 ITVIPNAVDLDLFGLPAPR 200
>gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the
GT1 family of glycosyltransferases. AmSD in Erwinia
amylovora has been shown to be involved in the
biosynthesis of amylovoran, the acidic exopolysaccharide
acting as a virulence factor. This enzyme may be
responsible for the formation of galactose alpha-1,6
linkages in amylovoran.
Length = 348
Score = 27.6 bits (62), Expect = 6.8
Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 34/198 (17%)
Query: 5 FFYPN---VGGVEEHIFNLSQCLLQRGHKVIVLT--------HSYKDRVGIRYMTNGLKV 53
F P+ GG E + NL+ L ++GH+V +++ + ++ + + G K
Sbjct: 4 FVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDL--GDKR 61
Query: 54 YYCPIKTFYNQSILPTMVCSIPLVRHILLREEISIV--HGHSAFSALAHETMMIARLLGL 111
+ F L R +L + +V S + LA L +
Sbjct: 62 DSKLLARFKKLRRL----------RKLLKNNKPDVVISFLTSLLTFLA-----SLGLKIV 106
Query: 112 KTVFTDHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIP 171
K + ++H+ A + + + + ++ + L + + NV VIP
Sbjct: 107 KLIVSEHNSP-DAYKKRLRRLLLRRLLYRRADAVVVLTEEDRA---LYYKKFNKNVVVIP 162
Query: 172 NAVDTTVFVPDVSRRSHN 189
N + P +S
Sbjct: 163 NPLPFPPEEPSSDLKSKR 180
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 27.6 bits (62), Expect = 6.9
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 10 VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTN--GLKVYYCPIKTFYNQ 64
G +E +F LL G +V++ Y G K P+ N
Sbjct: 95 TAGAKEALFLAFLALLNPGDEVLIPDPGY---PSYEAAVKLAGGKPVPVPLDEEENG 148
>gnl|CDD|176808 cd08974, BaFpgNei_N_2, Uncharacterized bacterial subgroup of the
N-terminal domain of Fpg (formamidopyrimidine-DNA
glycosylase, MutM)_Nei (endonuclease VIII)
base-excision repair DNA glycosylases. This family is
an uncharacterized bacterial subgroup of the FpgNei_N
domain superfamily. DNA glycosylases maintain genome
integrity by recognizing base lesions created by
ionizing radiation, alkylating or oxidizing agents, and
endogenous reactive oxygen species. They initiate the
base-excision repair process, which is completed with
the help of enzymes such as phosphodiesterases, AP
endonucleases, DNA polymerases and DNA ligases. DNA
glycosylases cleave the N-glycosyl bond between the
sugar and the damaged base, creating an AP
(apurinic/apyrimidinic) site. Most FpgNei DNA
glycosylases use their N-terminal proline residue as the
key catalytic nucleophile, and the reaction proceeds via
a Schiff base intermediate. This N-terminal proline is
conserved in this family. Escherichia coli Fpg prefers
8-oxo-7,8-dihydroguanine (8-oxoG) and oxidized purines,
and Escherichia coli Nei recognizes oxidized
pyrimidines. However, neither Escherichia coli Fpg or
Nei belong to this family. In addition to this
BaFpgNei_N_2 domain, enzymes belonging to this family
contain a helix-two turn-helix (H2TH) domain. Most also
contain a zinc-finger motif.
Length = 98
Score = 26.1 bits (58), Expect = 7.3
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 80 ILLREEISIVHGHSAFSALAHETMMIARLLGLKTV----FTDHSLFGFADSS 127
++LRE + G + A + + RL G K + + H L F D +
Sbjct: 8 VILREAAAAFKGQTVIRASGNAKIDKDRLAGQKVLAIRSWGKHFLLEFEDFT 59
>gnl|CDD|234325 TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1. This
protein is designated Asp1 because, along with SecY2,
SecA2, and other proteins it is part of the accessory
secretory protein system. The system is involved in the
export of serine-rich glycoproteins important for
virulence in a number of Gram-positive species,
including Streptococcus gordonii and Staphylococcus
aureus. This protein family is assigned to transport
rather than glycosylation function, but the specific
molecular role is unknown [Protein fate, Protein and
peptide secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 519
Score = 27.4 bits (61), Expect = 9.4
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 153 KENTVLRARVNHYNV---SVIPNAVDTTVFVPDVSRRSHNETLIAGIESAI--------- 200
E + R+ + + +A+D + D+S+ T I+GI + I
Sbjct: 402 DEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQINKVETD 461
Query: 201 --SDLKNGRAISPFKCHETVKSL 221
KNG I E +K+L
Sbjct: 462 YVEHNKNGYIID--DISELLKAL 482
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.408
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,405,872
Number of extensions: 1143443
Number of successful extensions: 1097
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1066
Number of HSP's successfully gapped: 46
Length of query: 252
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 157
Effective length of database: 6,723,972
Effective search space: 1055663604
Effective search space used: 1055663604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)