RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8013
(252 letters)
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 93.9 bits (234), Expect = 2e-22
Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 6/179 (3%)
Query: 6 FYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQS 65
YP+VGG L + L +RGH++ +T R+ Y + + + +
Sbjct: 22 CYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFRLNKVY--PNIYFHEVTVNQYSVFQ 79
Query: 66 ILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLG--LKTVFTDHSLFGF 123
P + + + RE + I+H H A A + +++G +K V T H
Sbjct: 80 YPPYDLALASKMAEVAQRENLDILHVHYAIPH-AICAYLAKQMIGERIKIVTTLHGTDIT 138
Query: 124 ADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPD 182
S N + + + VSH T + ++ + N +D V+
Sbjct: 139 VLGSDPSLNNLIRFGIEQSDVVTAVSHSLINET-HELVKPNKDIQTVYNFIDERVYFKR 196
Score = 28.8 bits (65), Expect = 1.6
Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 190 ETLIAGIESAISDLKNGRAISPFKCHETVKSLYNWVDVSERTEIVYKRVTQEETKS 245
+ + D + R + + E+V + + + E +Y V +++
Sbjct: 338 TGVADQAIQLLKDEELHRNMG-ERARESVYEQFRSEKIVSQYETIYYDVLRDDKNG 392
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, complex; HET: GDP;
2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Length = 406
Score = 92.3 bits (230), Expect = 8e-22
Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 12/188 (6%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKT 60
MV + + GGV+ H+ L++ L GH+V VL + Y+ +G K PI
Sbjct: 25 MVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAV--PIPY 82
Query: 61 FYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120
+ + L + V+ + + ++H H + +M+ + V T H+
Sbjct: 83 NGSVARLRFGPATHRKVKKWIAEGDFDVLHIHEPNAPSL--SMLALQAAEGPIVATFHTS 140
Query: 121 FGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHY--NVSVIPNAVDTTV 178
+ V L I VS R ++ + IPN VD
Sbjct: 141 -TTKSLTLSVFQGILRPYHEKIIGRIAVSD-----LARRWQMEALGSDAVEIPNGVDVAS 194
Query: 179 FVPDVSRR 186
F
Sbjct: 195 FADAPLLD 202
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 90.1 bits (224), Expect = 4e-21
Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 10/185 (5%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKT 60
+V++ F P +GG++ ++ + V T + ++ T +V P
Sbjct: 9 VVTNDFPPRIGGIQSYLRDFIATQDPESIVVFASTQNAEEAHAYDK-TLDYEVIRWPRSV 67
Query: 61 FYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120
LPT + + I+ EI V +A LA + K + + H
Sbjct: 68 M-----LPTPT-TAHAMAEIIREREIDNVWFGAAAP-LALMAGTAKQAGASKVIASTHGH 120
Query: 121 FGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFV 180
+ + L + +S A +H +P+ VD F
Sbjct: 121 EVGWSMLP-GSRQSLRKIGTEVDVLTYISQYTLR-RFKSAFGSHPTFEHLPSGVDVKRFT 178
Query: 181 PDVSR 185
P
Sbjct: 179 PATPE 183
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
lipopolysaccharide biosynthesis, family GT-4,
glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Length = 374
Score = 74.7 bits (184), Expect = 1e-15
Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 19/189 (10%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKT 60
++P GG++ ++ + RGH V V T S++ ++ P+K+
Sbjct: 5 FCLYKYFP-FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCP-----KAFELIQVPVKS 58
Query: 61 FYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSL 120
N V++ L V G + L A + + V +
Sbjct: 59 HTNHGRNAEYY---AWVQNHLKEHPADRVVGFNKMPGLD--VYFAADVCYAEKVAQEKGF 113
Query: 121 FG-----FADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVD 175
+ +A + ++ + + ++P +
Sbjct: 114 LYRLTSRYRHYAAFER---ATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIY 170
Query: 176 TTVFVPDVS 184
+
Sbjct: 171 PDRKYSEQI 179
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 73.5 bits (181), Expect = 4e-15
Identities = 30/207 (14%), Positives = 72/207 (34%), Gaps = 25/207 (12%)
Query: 1 MVSDFFYP-------NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRY-MTNGLK 52
M+S P + GG+ +I + + L ++G +V + T + + G + L+
Sbjct: 25 MISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLR 84
Query: 53 VYYCPI--KTFYNQSILPTMVC--SIPLVRHIL-LREEISIVHGHSAFSALAHETMMIAR 107
V ++ LPT + + ++ + ++H H S ++
Sbjct: 85 VINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQV--GWLLRD 142
Query: 108 LLGLKTVFTDHSLFGFADSSAIVTN---------KCLEISLAGCNHCICVSHIGKENTVL 158
L + + T H+L +S + C + + + + ++ +
Sbjct: 143 LWRIPLIHTAHTL-AAVKNSYRDDSDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMH 201
Query: 159 RARVNHYNVSVIPNAVDTTVFVPDVSR 185
+ +SV+ D ++ P R
Sbjct: 202 HYDADPDRISVVSPGADVELYSPGNDR 228
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
{Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Length = 499
Score = 57.8 bits (140), Expect = 6e-10
Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 42/222 (18%)
Query: 7 YPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRY--------MTNGLKVYYCP- 57
+P+ GG ++ +S L + G +V ++T KD + TN +++ P
Sbjct: 29 HPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPF 88
Query: 58 -----IKTFYNQSILPTMVCSIPLVRHIL-LREEISIVHGHSAFSALAHETMMIARLLGL 111
+ L V ++ + +V H LA +++ + GL
Sbjct: 89 GGDKFLPKEELWPYLHEYVNK--IINFYREEGKFPQVVTTHYGDGGLAG--VLLKNIKGL 144
Query: 112 KTVFTDHSL-------FGFADSSAIVTNK---------CLEISLAGCNHCICVSHIGKEN 155
FT HSL S+ ++ ++++ + I + +
Sbjct: 145 PFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFG 204
Query: 156 TVLR--ARVNHYN-----VSVIPNAVDTTVFVPDVSRRSHNE 190
R SVIP V+T VF + + +
Sbjct: 205 QYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAK 246
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 54.3 bits (131), Expect = 9e-09
Identities = 20/195 (10%), Positives = 50/195 (25%), Gaps = 21/195 (10%)
Query: 1 MVSDFFYPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVG--IRYMTNGLKVYYCPI 58
V+ + GGV E + +L L G + + N L+
Sbjct: 45 HVNSTSFG--GGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLK 102
Query: 59 KTFYNQSILPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLL-GLKTVFTD 117
T + + + + V H A +I ++
Sbjct: 103 LTEEMKELYLNV---NRENSKFIDLSSFDYVLVHDPQPA-----ALIEFYEKKSPWLWRC 154
Query: 118 HSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTT 177
H + + L + + I ++ ++ ++P ++D
Sbjct: 155 HIDLSSPNREFW---EFLRRFVEKYDRYIFHL-----PEYVQPELDRNKAVIMPPSIDPL 206
Query: 178 VFVPDVSRRSHNETL 192
+++ +
Sbjct: 207 SEKNVELKQTEILRI 221
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin
A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB:
2iv3_A*
Length = 342
Score = 50.9 bits (122), Expect = 9e-08
Identities = 27/186 (14%), Positives = 47/186 (25%), Gaps = 46/186 (24%)
Query: 8 PNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSIL 67
GG++ + NL LL+ GH+V +L + P
Sbjct: 27 QGYGGIQWVVANLMDGLLELGHEVFLLGA--PGSP-----AGRPGLTVVPAG-------E 72
Query: 68 PTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSS 127
P + L ++ +VH HS G + + H
Sbjct: 73 PEE------IERWLRTADVDVVHDHSGGVIGP-----AGLPPGTAFISSHHF-------- 113
Query: 128 AIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDVSRRS 187
+ N C + VIP VD + + +
Sbjct: 114 ----------TTRPVNPVGCTYS---SRAQRAHCGGGDDAPVIPIPVDPARYRSAADQVA 160
Query: 188 HNETLI 193
+ L+
Sbjct: 161 KEDFLL 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 6e-07
Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 53/160 (33%)
Query: 59 KTFYNQSILPTM-VCSIPLVRHILLREE-----ISIVHGHSA--FSALAHETMMIARLL- 109
T + Q P + + L+ + + GHS ++ALA +A ++
Sbjct: 1728 ATQFTQ---PALTLMEKAAFE--DLKSKGLIPADATFAGHSLGEYAALAS----LADVMS 1778
Query: 110 ---GLKTVF--------------TDHSLFGFADSSAIVTNKCLEISLAGCNHCI--CVSH 150
++ VF S +G AI + ++ + + V
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMI---AINPGR---VAASFSQEALQYVVER 1832
Query: 151 IGKENT-VLRARVNHYNVS----VI---PNAVDTTVFVPD 182
+GK ++ VN YNV V A+DT V +
Sbjct: 1833 VGKRTGWLVEI-VN-YNVENQQYVAAGDLRALDTVTNVLN 1870
Score = 45.4 bits (107), Expect = 1e-05
Identities = 51/346 (14%), Positives = 98/346 (28%), Gaps = 124/346 (35%)
Query: 17 IF----NLSQCL--LQRGHKVIVLTHSYKDRVG--IRYMTNGL-----------KVYY-- 55
IF N L+ L +Y VG I++ L KV+
Sbjct: 159 IFGGQGNTDDYFEELRD------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 56 CPIKTFY-------NQSILPTMVCSIPL-----------VRHIL------LREEISIVHG 91
I + ++ L ++ S PL +L LR + G
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 92 HSA----------------FSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCL 135
HS F + + + +G++ + + + L
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC----YEAYPNTSLPPSILEDSL 328
Query: 136 E---------ISLAGCNHCICVSHIGKENTVLR-------ARVN---HYNVS-------- 168
E +S++ ++ K N+ L + VN + VS
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 169 --------VIPNAVD-------------TTVFVPDVSRRSHNETLIAGIESAISDL-KNG 206
P+ +D + F+P V+ H+ L+ + DL KN
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFHSHLLVPASDLINKDLVKNN 447
Query: 207 RAISPFKCHETVKSLYNWVDVSERTEIVYKRVTQEETKSVSEILKW 252
+ + V ++ D+ + + +R+ +KW
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII---RLPVKW 490
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar
donar complex rossmann fold, GT-B fold,
glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A
{Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Length = 816
Score = 46.9 bits (111), Expect = 3e-06
Identities = 34/272 (12%), Positives = 71/272 (26%), Gaps = 71/272 (26%)
Query: 8 PNVGGVEEHIFNLSQCL------------LQRGHKVIVLTHSYKDRVGIRY--------M 47
P+ GG +I + + L L ++++LT D VG
Sbjct: 299 PDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYD 358
Query: 48 TNGLKVYYCPIKTFYNQSI-----------LPTMVCSIPLVRHILLREEIS--IVHGHSA 94
+ + P +T L T + ++ G+ +
Sbjct: 359 SEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTED--AAVELSKELNGKPDLIIGNYS 416
Query: 95 FSALAHETMMIARLLGLKTVFTDHSLF-----------------------------GFAD 125
L ++A LG+ H+L
Sbjct: 417 DGNLV--ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNH 474
Query: 126 SSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYN-----VSVIPNAVDTTVFV 180
+ I+T+ EI+ + SH L V+ + +++ D +++
Sbjct: 475 TDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYF 534
Query: 181 PDVSRRSHNETLIAGIESAISDLKNGRAISPF 212
P + + IE + +
Sbjct: 535 PYTEEKRRLTKFHSEIEELLYSDVENKEHLCV 566
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 34.0 bits (77), Expect = 0.035
Identities = 19/213 (8%), Positives = 50/213 (23%), Gaps = 22/213 (10%)
Query: 11 GGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTM 70
GG+ L + + K ++ + + ++ +
Sbjct: 63 GGIS-TALKLFEQFDNKKFKKRIILTDATPNPKDL----QSFKSFKYVMPEEDKDFALQI 117
Query: 71 VCSIPLVRHILLREEISIVHGHSAFSAL------AHETMMIARLLGLKTVFTDHSLFGFA 124
V + + I + ++A + ++ GF
Sbjct: 118 VPFNDRYNRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFY 177
Query: 125 DSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDVS 184
S+ G + S + K+ + N + ++TT+
Sbjct: 178 QWSSQYVLAESTYKYRGPQIAVFNSELLKQYFNNKG-YNFTDEYFFQPKINTTLKNYIND 236
Query: 185 RRSHNETLIAGIESAISDLKNGRAISPFKCHET 217
+R + ++ GR
Sbjct: 237 KRQKEKIILVY----------GRPSVKRNAFTL 259
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus
thermophilus} PDB: 2yz5_A 2z4g_A
Length = 267
Score = 31.2 bits (71), Expect = 0.25
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 90 HGHSAFSALAHETM--MI--ARLLGLKTV-FTDHS 119
H H+ A + AR GLK V FTDHS
Sbjct: 5 HVHTPLCGHAEGHPEAYLEEARAKGLKGVVFTDHS 39
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann
fold, glycopeptide, VACO antibiotic,
transferase-antibiotic complex; HET: OMZ GHP OMY 3FG
TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP:
c.87.1.5
Length = 416
Score = 29.8 bits (67), Expect = 0.84
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 24 LLQRGHKVIVLTH-SYKDRV---GIRY 46
L G + + + ++R+ G+ +
Sbjct: 24 LKALGVQTRMCAPPAAEERLAEVGVPH 50
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET:
ERY UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 29.4 bits (66), Expect = 1.1
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 16 HIFN---LSQCLLQRGHKVIVLTH-SYKDRV 42
H+ + + L+ RGH+V + D+V
Sbjct: 20 HVNPSLEVIRELVARGHRVTYAIPPVFADKV 50
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 29.3 bits (66), Expect = 1.3
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 16 HIFN---LSQCLLQRGHKVIVLTH-SYKDRV 42
H+ + Q L+ RGH+V + +V
Sbjct: 25 HVNPSLGIVQELVARGHRVSYAITDEFAAQV 55
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 29.0 bits (65), Expect = 1.5
Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 24 LLQRGHKVIVLTH-SYKDRV---GIRY 46
+ G V + +R+ G+ +
Sbjct: 24 VRDLGADVRMCAPPDCAERLAEVGVPH 50
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH,
cell WALL, STR genomics, PSI-2, protein structure
initiative; 1.80A {Bacillus anthracis}
Length = 203
Score = 28.5 bits (64), Expect = 1.7
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 104 MIARLLGLKTVFTDHSLFGFADSSAI 129
++ L T F D +
Sbjct: 108 LLVEAYKLDTKVNGTPATKFKDLETL 133
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 28.4 bits (64), Expect = 2.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 18 FNLSQCLLQRGHKVIVL 34
NL + LL+ VI L
Sbjct: 39 SNLLEKLLKLNQVVIGL 55
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 28.4 bits (64), Expect = 2.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 18 FNLSQCLLQRGHKVIVL 34
NL + LL+ KV+ L
Sbjct: 41 SNLLETLLKLDQKVVGL 57
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf;
1.91A {Micromonospora echinospora}
Length = 402
Score = 28.1 bits (63), Expect = 3.0
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 16 HIFN---LSQCLLQRGHKVIVLTH-SYKDRV 42
H++ L L +RGH++ +T + D V
Sbjct: 17 HVYPSLGLVSELARRGHRITYVTTPLFADEV 47
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein
structure initiative, center for eukaryotic structural
genomics; HET: TYD C0T; 2.19A {Micromonospora
echinospora} PDB: 3iaa_A*
Length = 415
Score = 28.1 bits (63), Expect = 3.0
Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 24 LLQRGHKVIVLTH-SYKDRV 42
L++RGH+V +T + + V
Sbjct: 44 LVRRGHRVSYVTAGGFAEPV 63
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 4.8
Identities = 26/131 (19%), Positives = 41/131 (31%), Gaps = 45/131 (34%)
Query: 22 QCLLQRGHKVIVLTHSY-KDRVGI------RYMTNGLKVYYCPIKTFYNQSILPTMVCSI 74
Q LLQ G KV+V T + K +Y G + P +NQ S
Sbjct: 495 QGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVP----FNQG-------SK 543
Query: 75 ----PLVRHI--------------------LLREEISIVHGHSAFSALAHETMMIA--RL 108
L+ I + E+ + + S AH M+ R+
Sbjct: 544 QDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRM 603
Query: 109 LG-LKTVFTDH 118
+G +K +
Sbjct: 604 MGCVKKQKSAR 614
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 27.5 bits (61), Expect = 4.9
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 20 LSQCLLQRGHKVIVLTH-SYKDRV 42
L+ L + G + Y +R
Sbjct: 20 LAARLRELGADARMCLPPDYVERC 43
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 27.2 bits (61), Expect = 5.1
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 18 FNLSQCLLQRGHKVIVL 34
++++ LL+RG KV+ +
Sbjct: 35 SHIAELLLERGDKVVGI 51
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesi antimicrobial target, structure-based
design, isomerase; 0.98A {Magnaporthe grisea} SCOP:
d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Length = 233
Score = 27.2 bits (61), Expect = 5.1
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 184 SRRSHNETLIAGIESAISDLKNGRAI 209
S S ++ I I KNG +
Sbjct: 3 STDSIPKSNFDAIPDVIQAFKNGEFV 28
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 27.0 bits (60), Expect = 6.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 20 LSQCLLQRGHKVIVLT 35
L+ L GH+VI L
Sbjct: 163 LTAQLQTGGHEVIQLV 178
>1qqh_A Papillomavirus transcription factor E2; amphipathic helix,
cashew/kidney shape, viral protein; 2.10A {Human
papillomavirus type 18} SCOP: b.91.1.1
Length = 144
Score = 26.1 bits (58), Expect = 6.8
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 35 THSYKDRVGIRYMTNGLKVYY 55
T + G+ Y+ G +Y
Sbjct: 84 TATCVSHRGLYYVKEGYNTFY 104
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavine biosynthesis, skeletal rearrangement,
antimicrobial target; 1.40A {Escherichia coli} SCOP:
d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Length = 217
Score = 26.4 bits (59), Expect = 8.5
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 184 SRRSHNETLIAGIESAISDLKNGRAI 209
+ S T +E+A++ L+ GR +
Sbjct: 4 TLLSSFGTPFERVENALAALREGRGV 29
>1tue_B Regulatory protein E2; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
b.91.1.1
Length = 218
Score = 26.2 bits (58), Expect = 8.6
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 35 THSYKDRVGIRYMTNGLKVYY 55
T + G+ Y+ G +Y
Sbjct: 156 TATCVSHRGLYYVKEGYNTFY 176
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 26.4 bits (59), Expect = 9.3
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 18 FNLSQCLLQRGHKVIVL 34
+L++ L+ G +V VL
Sbjct: 21 GHLARALVASGEEVTVL 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.408
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,760,976
Number of extensions: 216820
Number of successful extensions: 628
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 50
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.6 bits)