RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8013
(252 letters)
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 437
Score = 55.6 bits (132), Expect = 1e-09
Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 45/233 (19%)
Query: 1 MVSDFFYPN-VGGVEEHIFNLSQCLLQRGHKVIVLTHSYKD----------------RVG 43
++ F P VGG+ E + +S+ L GH+V+V T S+ +V
Sbjct: 5 LLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVK 64
Query: 44 IRY-MTNGLKVYYCPIKTFYNQSILPTM-------------VCSIPLVRHILLREEISIV 89
+ Y L++Y ++ + + L + +V
Sbjct: 65 VSYEERGNLRIYRIGGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVV 124
Query: 90 HGHSAFSALAHETMMIARLLGLKTVFTDHSLF------------GFADSSAIVTNKCLEI 137
H H + A +I + + VFT H L G ++ +
Sbjct: 125 HFHDWHTVFAG--ALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHT 182
Query: 138 SLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDVSRRSHNE 190
+ VS + R ++ + N +D + + S +E
Sbjct: 183 GGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDE 235
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 477
Score = 50.0 bits (118), Expect = 9e-08
Identities = 37/259 (14%), Positives = 66/259 (25%), Gaps = 70/259 (27%)
Query: 1 MVSDFFYP--NVGGVEEHIFNLSQCLLQRGHKVIVLTHSYK------------------- 39
VS YP GG+ + + L L G + L Y
Sbjct: 5 SVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLL 64
Query: 40 -DRVGIRYMT-NGLKVYYCPIKTFYNQSILP------------------TMVCSIPLVRH 79
++ + + L + +Y +S P + + +
Sbjct: 65 GEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAG 124
Query: 80 ILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHS-------------------- 119
+L +VH H +A+ M A + ++ T H+
Sbjct: 125 VLPGWRPDMVHAHDWQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAH 184
Query: 120 LFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRA---------RVNHYNVSVI 170
FG L+ L VS E + + + I
Sbjct: 185 AFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGI 244
Query: 171 PNAVDTTVFVPDVSRRSHN 189
N +D V+ P H+
Sbjct: 245 VNGIDADVWNPATDHLIHD 263
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis
protein RfaG {Escherichia coli [TaxId: 562]}
Length = 370
Score = 49.1 bits (115), Expect = 2e-07
Identities = 21/168 (12%), Positives = 46/168 (27%), Gaps = 12/168 (7%)
Query: 7 YPNVGGVEEHIFNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSI 66
Y GG++ ++ + RGH V V T S++ ++ P+K+ N
Sbjct: 9 YFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCP-----KAFELIQVPVKSHTNHGR 63
Query: 67 LPTMVCSIPLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADS 126
V++ L V G + + A + + V + S
Sbjct: 64 NAEY---YAWVQNHLKEHPADRVVGFNKMP--GLDVYFAADVCYAEKVAQEKGFLYRLTS 118
Query: 127 SAIVTNKC--LEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIPN 172
+ ++ + + ++P
Sbjct: 119 RYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPP 166
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 391
Score = 30.4 bits (67), Expect = 0.19
Identities = 21/175 (12%), Positives = 36/175 (20%), Gaps = 17/175 (9%)
Query: 10 VGGVEEHIF---NLSQCLLQRGHKVIVLTH-SYKDRV---GIRYMTNGLKVYYCPIKTFY 62
G L+ L + G + Y +R G+ + G
Sbjct: 7 GCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRA----VRAGAR 62
Query: 63 NQSILPTMVCSI------PLVRHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFT 116
LP + + E + A +A LG+ +T
Sbjct: 63 EPGELPPGAAEVVTEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYT 122
Query: 117 DHSLFGFADSSAIVTNKCLEISLAGCNHCICVSHIGKENTVLRARVNHYNVSVIP 171
S + SH + Y + P
Sbjct: 123 VLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQP 177
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 29.7 bits (65), Expect = 0.32
Identities = 12/164 (7%), Positives = 40/164 (24%)
Query: 20 LSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLVRH 79
L++ L RG + + Y + ++ + L M + +
Sbjct: 21 LAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGDVSQD 80
Query: 80 ILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEISL 139
+ + + + L + + + +D + ++ +
Sbjct: 81 VPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFS 140
Query: 140 AGCNHCICVSHIGKENTVLRARVNHYNVSVIPNAVDTTVFVPDV 183
+ + V H + ++P +
Sbjct: 141 SSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGL 184
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 401
Score = 28.5 bits (62), Expect = 0.72
Identities = 5/37 (13%), Positives = 10/37 (27%), Gaps = 4/37 (10%)
Query: 10 VGGVEEHIF---NLSQCLLQRGHKVIVLTH-SYKDRV 42
G L+ + G V + +R+
Sbjct: 7 TCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERL 43
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 401
Score = 28.5 bits (62), Expect = 0.93
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 10 VGGVEEHIF---NLSQCLLQRGHKVIVLTH-SYKDRV---GIRYMTNGL 51
V G + L+ L G + + + ++R+ G+ ++ GL
Sbjct: 7 VCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVGL 55
>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human
papillomavirus type 18 [TaxId: 333761]}
Length = 194
Score = 26.9 bits (60), Expect = 1.8
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 35 THSYKDRVGIRYMTNGLKVYY 55
T + G+ Y+ G +Y
Sbjct: 154 TATCVSHRGLYYVKEGYNTFY 174
>d1r6na_ b.91.1.1 (A:) E2 regulatory, transactivation domain {Human
papillomavirus type 11 [TaxId: 10580]}
Length = 196
Score = 26.9 bits (60), Expect = 2.1
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 35 THSYKDRVGIRYMTNGLKVYY 55
S D GI Y K YY
Sbjct: 148 VTSSVDAKGIYYTCGQFKTYY 168
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 25.2 bits (54), Expect = 8.0
Identities = 21/150 (14%), Positives = 40/150 (26%)
Query: 18 FNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLKVYYCPIKTFYNQSILPTMVCSIPLV 77
+NL L GH+V++ + V I + + + S M + +
Sbjct: 14 YNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRL 73
Query: 78 RHILLREEISIVHGHSAFSALAHETMMIARLLGLKTVFTDHSLFGFADSSAIVTNKCLEI 137
R L I + H + L G + FA + +
Sbjct: 74 RGQLPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAGMANPLPVARYHS 133
Query: 138 SLAGCNHCICVSHIGKENTVLRARVNHYNV 167
+ + V+ R + V
Sbjct: 134 LVGSNIPADLTVNARFGEMVMAVRDDRRRV 163
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 25.2 bits (54), Expect = 8.4
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 18 FNLSQCLLQRGHKVIVLTHSYKDRVGIRYMTNGLK-VYYCPIKTFYNQSILPTMVCSIPL 76
L++ LL++G++V + R + T + +Y P + +
Sbjct: 15 SYLAEFLLEKGYEVHGI-----KRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSN 69
Query: 77 VRHILLREEISIVHGHSAFSALAH 100
+ IL + V+ A S +A
Sbjct: 70 LTRILREVQPDEVYNLGAMSHVAV 93
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 24.9 bits (54), Expect = 9.1
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 196 IESAISDLKNGRAI 209
+E+A++ L+ GR +
Sbjct: 12 VENALAALREGRGV 25
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 24.9 bits (54), Expect = 9.3
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 196 IESAISDLKNGRAI 209
+E AI LK G I
Sbjct: 3 VEKAIEALKKGEII 16
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.408
Gapped
Lambda K H
0.267 0.0383 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 907,665
Number of extensions: 39247
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 23
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.7 bits)