BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8015
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
++ DGR + + PYDAIHVGAA P P+ I LK GGRL++P+G QML YDK
Sbjct: 138 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 197
Query: 135 HNGTIDIQ 142
+G+I ++
Sbjct: 198 QDGSIKMK 205
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 79 DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIG-DTKQQMLTIYDKFHNG 137
DGR + N PY+AIHVGAA P P I+ L SGGRL++P+G D Q + YDK NG
Sbjct: 153 DGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANG 212
Query: 138 TIDI 141
+++
Sbjct: 213 KVEM 216
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD--TKQQMLTIYDK 133
++ DG F PYD I V A P+ PE I LK GG+L+IP+G Q++L + K
Sbjct: 145 ILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEV-RK 203
Query: 134 FHNGTIDIQHWGVVQVGLL 152
+G H GV V L+
Sbjct: 204 TKDGIKIKNHGGVAFVPLI 222
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQML 128
++ DG + PYD I+ AA P+ PE I LK GG+L++P+G Q+++
Sbjct: 133 IVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYLQRLV 185
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 88 GPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQML 128
G +DAIHVGA+ PEI + L G+L+IPI + Q+L
Sbjct: 161 GLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDYTQVL 201
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 79 DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGT 138
DG + P+DAI V AA P P + L GG LV+P+G+ Q + + +
Sbjct: 133 DGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFI 192
Query: 139 ID 140
ID
Sbjct: 193 ID 194
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPI 120
+ DG + PYD I V PE + LK GGR+++PI
Sbjct: 131 VCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 175
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQML 128
++ DG + + PYD + V A P LK GG ++PIG + Q L
Sbjct: 121 ILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIXILPIGVGRVQKL 173
>pdb|1ULR|A Chain A, Crystal Structure Of Tt0497 From Thermus Thermophilus Hb8
Length = 88
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 10/40 (25%)
Query: 77 IADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRL 116
+ DGR GP +A+ E+F+HHLK G RL
Sbjct: 37 LPDGRVEVVAEGPKEAL----------ELFLHHLKQGPRL 66
>pdb|2EL8|A Chain A, Solution Structure Of The Human Stap2 Sh2 Domain
Length = 118
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 101 RYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLY--DVKAG 158
RYPE G L+ P GD + + HNGT ++H+ V + G Y DV+
Sbjct: 39 RYPEC-------GNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQP 91
Query: 159 YS 160
+S
Sbjct: 92 FS 93
>pdb|4ANR|A Chain A, Crystal Structure Of Soluble Lytic Transglycosylase Sltb1
From Pseudomonas Aeruginosa
Length = 323
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 21 LSGHSKRLDCLALTSNTKQSTTLPTFIPNSFN 52
L +++D L+LT + + LP F+P+SF
Sbjct: 157 LLAREQQVDPLSLTGSYAGAMGLPQFMPSSFR 188
>pdb|2I48|A Chain A, Crystal Structure Of Bicarbonate Transport Protein Cmpa
From Synechocystis Sp. Pcc 6803 In Complex With Carbonic
Acid
pdb|2I49|A Chain A, Crystal Structure Of Apo Form Of Bicarbonate Transport
Protein Cmpa From Synechocystis Sp. Pcc 6803
pdb|2I4B|A Chain A, Crystal Structure Of Bicarbonate Transport Protein Cmpa
From Synechocystis Sp. Pcc 6803 In Complex With
Bicarbonate And Calcium
pdb|2I4C|A Chain A, Crystal Structure Of Bicarbonate Transport Protein Cmpa
From Synechocystis Sp. Pcc 6803 In Complex With
Bicarbonate And Calcium
Length = 429
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 56 YYYLSGGPLSSTIDPDHDYDLIADGRASFGD---NGPYDAIHVGAAYP 100
Y++ +GG +DPD D DL+A A NG DA G +P
Sbjct: 181 YWFAAGG-----VDPDTDIDLLAVPPAETVQGMRNGTMDAFSTGDPWP 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,365,788
Number of Sequences: 62578
Number of extensions: 236933
Number of successful extensions: 428
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 14
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)