Query psy8015
Match_columns 165
No_of_seqs 166 out of 1199
Neff 7.9
Searched_HMMs 46136
Date Sat Aug 17 00:37:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 100.0 2.2E-37 4.7E-42 238.0 16.9 152 7-160 54-208 (209)
2 PF01135 PCMT: Protein-L-isoas 100.0 1.6E-33 3.5E-38 218.7 12.7 150 6-156 53-208 (209)
3 PRK13942 protein-L-isoaspartat 100.0 2.2E-27 4.7E-32 184.7 17.8 147 7-156 58-210 (212)
4 TIGR00080 pimt protein-L-isoas 100.0 9.5E-27 2.1E-31 181.2 18.2 149 9-160 61-215 (215)
5 PRK13944 protein-L-isoaspartat 99.9 7.6E-26 1.7E-30 175.1 17.4 143 9-153 56-205 (205)
6 PRK00312 pcm protein-L-isoaspa 99.9 6.4E-25 1.4E-29 170.3 17.8 146 9-156 62-210 (212)
7 KOG1661|consensus 99.9 1.1E-22 2.3E-27 155.8 13.9 152 9-160 64-234 (237)
8 PRK13943 protein-L-isoaspartat 99.9 3.8E-21 8.2E-26 158.0 16.1 148 5-154 60-215 (322)
9 COG2242 CobL Precorrin-6B meth 99.8 7.8E-21 1.7E-25 143.8 8.1 149 12-163 21-179 (187)
10 COG2226 UbiE Methylase involve 99.8 4.5E-19 9.7E-24 139.8 11.5 112 10-121 35-157 (238)
11 PF01209 Ubie_methyltran: ubiE 99.8 2.1E-18 4.6E-23 136.1 7.9 106 14-120 36-153 (233)
12 COG4122 Predicted O-methyltran 99.7 6.1E-17 1.3E-21 126.2 8.9 110 10-119 43-165 (219)
13 PF12847 Methyltransf_18: Meth 99.7 1.6E-16 3.4E-21 110.6 8.9 95 26-120 1-111 (112)
14 PRK08287 cobalt-precorrin-6Y C 99.7 4E-16 8.7E-21 118.8 10.2 150 10-163 16-177 (187)
15 PLN02233 ubiquinone biosynthes 99.7 1.1E-15 2.4E-20 122.4 12.5 108 13-121 60-183 (261)
16 PLN02476 O-methyltransferase 99.7 2E-16 4.4E-21 127.4 7.6 111 9-119 101-227 (278)
17 PRK00107 gidB 16S rRNA methylt 99.7 5E-16 1.1E-20 118.9 9.4 108 25-133 44-158 (187)
18 PLN02781 Probable caffeoyl-CoA 99.7 2.8E-16 6.1E-21 124.1 7.9 110 9-118 51-176 (234)
19 PF01596 Methyltransf_3: O-met 99.7 6.2E-17 1.3E-21 125.5 3.6 111 9-119 28-154 (205)
20 PF05175 MTS: Methyltransferas 99.6 8.7E-16 1.9E-20 115.6 9.6 118 4-123 10-143 (170)
21 PRK00377 cbiT cobalt-precorrin 99.6 3E-16 6.6E-21 120.6 6.7 145 18-164 33-191 (198)
22 PRK07402 precorrin-6B methylas 99.6 4.7E-16 1E-20 119.3 7.0 146 16-163 31-188 (196)
23 TIGR00138 gidB 16S rRNA methyl 99.6 2.8E-15 6E-20 114.1 10.6 97 26-124 42-146 (181)
24 TIGR02752 MenG_heptapren 2-hep 99.6 5.5E-15 1.2E-19 115.5 12.1 109 12-121 32-152 (231)
25 PLN02589 caffeoyl-CoA O-methyl 99.6 1.1E-15 2.3E-20 121.6 7.2 110 10-119 63-189 (247)
26 PLN02244 tocopherol O-methyltr 99.6 5.7E-15 1.2E-19 122.4 11.7 107 13-120 101-223 (340)
27 COG2519 GCD14 tRNA(1-methylade 99.6 4.9E-16 1.1E-20 122.5 5.0 134 14-150 83-224 (256)
28 TIGR02469 CbiT precorrin-6Y C5 99.6 1.1E-14 2.4E-19 102.5 11.4 108 12-120 6-122 (124)
29 PRK13168 rumA 23S rRNA m(5)U19 99.6 4.3E-15 9.2E-20 127.1 9.6 139 13-155 285-433 (443)
30 PRK14103 trans-aconitate 2-met 99.6 5.8E-15 1.2E-19 117.5 9.5 105 10-121 14-127 (255)
31 PF13847 Methyltransf_31: Meth 99.6 5.4E-15 1.2E-19 108.9 8.6 97 25-122 2-112 (152)
32 PRK11207 tellurite resistance 99.6 2E-14 4.3E-19 110.6 10.9 104 14-119 19-133 (197)
33 PF08704 GCD14: tRNA methyltra 99.6 2E-15 4.3E-20 119.9 5.4 142 12-156 27-181 (247)
34 PRK11036 putative S-adenosyl-L 99.6 1.4E-14 3E-19 115.4 9.0 106 15-122 35-151 (255)
35 PTZ00098 phosphoethanolamine N 99.6 3.1E-14 6.8E-19 114.1 10.7 114 6-121 34-157 (263)
36 PF08241 Methyltransf_11: Meth 99.6 1.3E-14 2.9E-19 97.1 7.2 87 31-118 1-95 (95)
37 PRK03522 rumB 23S rRNA methylu 99.6 4.2E-14 9E-19 116.1 11.1 134 16-155 164-305 (315)
38 PRK04266 fibrillarin; Provisio 99.5 5.2E-14 1.1E-18 110.7 11.1 111 10-120 54-176 (226)
39 PF05401 NodS: Nodulation prot 99.5 1.9E-14 4.1E-19 110.1 7.6 98 23-121 40-147 (201)
40 PLN02396 hexaprenyldihydroxybe 99.5 2.7E-14 5.9E-19 117.5 8.1 97 26-122 131-237 (322)
41 TIGR01177 conserved hypothetic 99.5 9.9E-14 2.2E-18 114.4 10.9 118 6-123 162-297 (329)
42 PRK01683 trans-aconitate 2-met 99.5 1.3E-13 2.7E-18 109.7 10.8 104 13-121 19-131 (258)
43 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.2E-13 2.5E-18 110.9 10.4 105 17-121 62-200 (264)
44 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.7E-14 3.7E-19 113.0 5.2 95 26-121 59-162 (243)
45 PRK10258 biotin biosynthesis p 99.5 1.7E-13 3.8E-18 108.5 10.7 104 14-121 31-141 (251)
46 TIGR00477 tehB tellurite resis 99.5 2.2E-13 4.8E-18 104.6 10.8 104 14-120 19-133 (195)
47 TIGR00537 hemK_rel_arch HemK-r 99.5 2.7E-13 5.9E-18 102.5 11.1 96 25-123 18-143 (179)
48 PRK11088 rrmA 23S rRNA methylt 99.5 4.1E-13 8.9E-18 108.0 12.3 95 25-123 84-184 (272)
49 TIGR00479 rumA 23S rRNA (uraci 99.5 3.7E-14 8E-19 120.8 6.1 137 15-155 282-429 (431)
50 PRK11873 arsM arsenite S-adeno 99.5 1.8E-13 3.9E-18 109.7 9.7 96 24-119 75-182 (272)
51 PRK14901 16S rRNA methyltransf 99.5 2.1E-13 4.6E-18 116.4 10.3 106 15-120 241-384 (434)
52 PRK15001 SAM-dependent 23S rib 99.5 4.3E-13 9.4E-18 112.5 11.4 117 4-122 207-342 (378)
53 PLN02336 phosphoethanolamine N 99.5 3.7E-13 8E-18 115.8 10.8 107 13-120 254-369 (475)
54 PRK00121 trmB tRNA (guanine-N( 99.5 1.2E-13 2.7E-18 106.6 7.0 110 12-123 28-159 (202)
55 TIGR02085 meth_trns_rumB 23S r 99.5 1.6E-13 3.5E-18 115.1 8.2 126 25-155 232-365 (374)
56 PRK14903 16S rRNA methyltransf 99.5 3E-13 6.4E-18 115.4 9.9 109 13-121 224-367 (431)
57 PRK14967 putative methyltransf 99.5 9.4E-13 2E-17 102.9 11.2 110 11-123 22-162 (223)
58 PF13659 Methyltransf_26: Meth 99.5 1.7E-13 3.7E-18 96.0 6.3 95 27-121 1-116 (117)
59 PRK10909 rsmD 16S rRNA m(2)G96 99.5 8E-13 1.7E-17 102.1 10.6 113 10-122 37-161 (199)
60 PRK14904 16S rRNA methyltransf 99.4 8.4E-13 1.8E-17 113.1 11.3 102 19-122 244-379 (445)
61 PRK12335 tellurite resistance 99.4 8.7E-13 1.9E-17 106.9 10.8 102 16-120 111-223 (287)
62 TIGR03840 TMPT_Se_Te thiopurin 99.4 2.4E-12 5.2E-17 100.4 12.1 111 8-119 17-151 (213)
63 PF02353 CMAS: Mycolic acid cy 99.4 8.6E-13 1.9E-17 106.5 9.6 108 10-120 43-166 (273)
64 PRK05031 tRNA (uracil-5-)-meth 99.4 1.8E-13 4E-18 114.3 5.8 125 27-155 207-352 (362)
65 PRK08317 hypothetical protein; 99.4 2.1E-12 4.6E-17 100.2 11.4 108 13-121 7-125 (241)
66 PRK09489 rsmC 16S ribosomal RN 99.4 1.5E-12 3.4E-17 108.0 11.0 115 4-122 175-305 (342)
67 PRK10901 16S rRNA methyltransf 99.4 1.4E-12 3.1E-17 111.1 11.1 104 16-121 235-373 (427)
68 PRK14968 putative methyltransf 99.4 2.5E-12 5.5E-17 96.9 11.1 105 16-122 14-150 (188)
69 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.5E-12 3.3E-17 103.3 10.4 94 25-120 55-164 (247)
70 PRK14902 16S rRNA methyltransf 99.4 1.2E-12 2.7E-17 112.0 10.4 106 15-120 239-379 (444)
71 PRK15068 tRNA mo(5)U34 methylt 99.4 1.5E-12 3.3E-17 107.3 10.4 103 15-119 112-225 (322)
72 PRK00517 prmA ribosomal protei 99.4 1.7E-12 3.6E-17 103.3 10.2 108 4-120 97-213 (250)
73 TIGR02143 trmA_only tRNA (urac 99.4 2.7E-13 5.8E-18 113.0 5.8 125 27-155 198-343 (353)
74 TIGR00091 tRNA (guanine-N(7)-) 99.4 6.8E-13 1.5E-17 101.8 7.6 99 25-123 15-135 (194)
75 PTZ00146 fibrillarin; Provisio 99.4 2E-12 4.3E-17 104.8 10.4 98 24-121 130-238 (293)
76 PLN03075 nicotianamine synthas 99.4 2.3E-12 5.1E-17 104.6 10.2 107 12-120 110-233 (296)
77 PF13489 Methyltransf_23: Meth 99.4 1.4E-12 3E-17 95.5 7.8 102 14-123 9-118 (161)
78 PLN02336 phosphoethanolamine N 99.4 1.7E-12 3.7E-17 111.6 9.6 106 14-120 26-142 (475)
79 TIGR00452 methyltransferase, p 99.4 2.1E-12 4.5E-17 106.1 9.6 102 16-119 112-224 (314)
80 COG2265 TrmA SAM-dependent met 99.4 8.3E-13 1.8E-17 112.5 7.5 139 13-155 281-429 (432)
81 PLN02490 MPBQ/MSBQ methyltrans 99.4 2.7E-12 5.9E-17 106.4 10.3 103 16-119 103-214 (340)
82 TIGR00563 rsmB ribosomal RNA s 99.4 5E-12 1.1E-16 107.8 12.0 110 11-121 224-369 (426)
83 TIGR00406 prmA ribosomal prote 99.4 4.3E-12 9.4E-17 103.0 11.1 113 4-120 137-259 (288)
84 PF08242 Methyltransf_12: Meth 99.4 3.2E-13 7E-18 92.3 3.5 86 31-116 1-99 (99)
85 COG2813 RsmC 16S RNA G1207 met 99.4 4.1E-12 8.9E-17 102.8 10.3 116 4-122 137-268 (300)
86 TIGR03533 L3_gln_methyl protei 99.4 7.1E-12 1.5E-16 101.6 11.7 97 25-122 120-253 (284)
87 COG2264 PrmA Ribosomal protein 99.4 2.8E-12 6.1E-17 104.1 8.8 113 4-119 140-262 (300)
88 PRK05785 hypothetical protein; 99.4 7.1E-12 1.5E-16 98.5 10.8 96 12-113 36-140 (226)
89 KOG1540|consensus 99.4 8.2E-12 1.8E-16 98.7 10.8 110 10-120 84-214 (296)
90 PF13649 Methyltransf_25: Meth 99.4 6.1E-13 1.3E-17 91.5 4.0 84 30-114 1-101 (101)
91 PRK04457 spermidine synthase; 99.4 5.5E-12 1.2E-16 101.2 10.1 108 15-122 55-179 (262)
92 TIGR02072 BioC biotin biosynth 99.4 7.4E-12 1.6E-16 97.3 10.5 108 12-121 18-136 (240)
93 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 9.3E-12 2E-16 96.0 10.9 107 13-120 27-143 (223)
94 KOG1270|consensus 99.4 6E-13 1.3E-17 105.4 4.2 94 27-123 90-198 (282)
95 COG4106 Tam Trans-aconitate me 99.4 1.3E-12 2.9E-17 101.0 5.9 104 15-123 20-132 (257)
96 PRK00216 ubiE ubiquinone/menaq 99.3 2E-11 4.4E-16 95.0 12.2 107 13-120 39-158 (239)
97 PRK11705 cyclopropane fatty ac 99.3 1.1E-11 2.4E-16 104.3 11.4 102 15-121 157-268 (383)
98 TIGR03534 RF_mod_PrmC protein- 99.3 1.4E-11 3.1E-16 97.0 11.4 108 13-123 76-220 (251)
99 TIGR00740 methyltransferase, p 99.3 1.4E-11 3.1E-16 97.0 11.3 94 25-120 52-161 (239)
100 TIGR00536 hemK_fam HemK family 99.3 1.2E-11 2.7E-16 100.1 10.5 109 14-123 102-247 (284)
101 TIGR03587 Pse_Me-ase pseudamin 99.3 1.9E-11 4.1E-16 94.7 10.9 87 13-103 30-119 (204)
102 smart00650 rADc Ribosomal RNA 99.3 2E-11 4.3E-16 91.6 10.5 105 14-119 2-112 (169)
103 PRK13255 thiopurine S-methyltr 99.3 2.5E-11 5.5E-16 95.0 11.4 108 10-118 22-153 (218)
104 TIGR02021 BchM-ChlM magnesium 99.3 2E-11 4.3E-16 95.0 10.8 88 13-103 41-133 (219)
105 PRK11805 N5-glutamine S-adenos 99.3 2.2E-11 4.9E-16 99.8 11.4 96 27-123 134-266 (307)
106 smart00828 PKS_MT Methyltransf 99.3 8.1E-12 1.8E-16 97.2 8.1 92 28-120 1-104 (224)
107 TIGR03704 PrmC_rel_meth putati 99.3 2.7E-11 5.9E-16 96.6 11.1 95 26-123 86-219 (251)
108 PRK14121 tRNA (guanine-N(7)-)- 99.3 1.9E-11 4.1E-16 102.7 10.3 107 16-123 113-238 (390)
109 PF06325 PrmA: Ribosomal prote 99.3 4.8E-12 1E-16 103.0 6.2 110 4-119 139-258 (295)
110 PRK09328 N5-glutamine S-adenos 99.3 6.9E-11 1.5E-15 94.5 12.4 98 25-123 107-241 (275)
111 smart00138 MeTrc Methyltransfe 99.3 2.7E-11 5.9E-16 97.3 9.9 98 26-123 99-245 (264)
112 PRK11188 rrmJ 23S rRNA methylt 99.3 6.5E-11 1.4E-15 92.0 11.0 88 25-121 50-166 (209)
113 COG2230 Cfa Cyclopropane fatty 99.3 3.1E-11 6.8E-16 97.3 9.3 104 16-123 63-179 (283)
114 PRK00811 spermidine synthase; 99.3 2.7E-11 5.9E-16 98.2 9.0 97 25-121 75-192 (283)
115 TIGR00438 rrmJ cell division p 99.2 7.7E-11 1.7E-15 89.8 10.5 95 19-122 25-148 (188)
116 PRK07580 Mg-protoporphyrin IX 99.2 9.1E-11 2E-15 91.3 10.9 88 13-103 48-141 (230)
117 PF05958 tRNA_U5-meth_tr: tRNA 99.2 2.3E-12 5E-17 107.4 1.8 137 13-155 185-342 (352)
118 COG1041 Predicted DNA modifica 99.2 5E-11 1.1E-15 98.2 9.6 118 4-121 175-311 (347)
119 PRK06922 hypothetical protein; 99.2 5.8E-11 1.2E-15 104.9 10.3 96 25-121 417-538 (677)
120 PLN02585 magnesium protoporphy 99.2 9.4E-11 2E-15 96.4 10.4 89 13-104 129-227 (315)
121 PRK15128 23S rRNA m(5)C1962 me 99.2 3.2E-11 6.8E-16 102.0 7.0 104 14-120 211-339 (396)
122 PF03848 TehB: Tellurite resis 99.2 1.1E-10 2.4E-15 89.6 9.3 103 14-119 19-132 (192)
123 PRK14966 unknown domain/N5-glu 99.2 1.9E-10 4.2E-15 97.4 11.6 98 25-123 250-384 (423)
124 TIGR02716 C20_methyl_CrtF C-20 99.2 2.5E-10 5.3E-15 93.2 11.6 103 14-120 138-254 (306)
125 COG4123 Predicted O-methyltran 99.2 1.1E-10 2.4E-15 92.5 9.0 107 17-123 35-173 (248)
126 PRK06202 hypothetical protein; 99.2 2E-10 4.3E-15 90.2 10.3 90 14-104 48-144 (232)
127 TIGR01983 UbiG ubiquinone bios 99.2 2.6E-10 5.6E-15 88.5 10.5 96 26-121 45-150 (224)
128 PRK11783 rlmL 23S rRNA m(2)G24 99.2 6.9E-11 1.5E-15 106.4 8.2 99 25-123 537-659 (702)
129 COG2890 HemK Methylase of poly 99.2 2.1E-10 4.5E-15 92.9 10.3 93 29-123 113-241 (280)
130 KOG1663|consensus 99.2 7.2E-11 1.6E-15 92.0 7.2 110 10-119 57-182 (237)
131 COG2521 Predicted archaeal met 99.2 8.1E-11 1.7E-15 92.2 7.1 100 25-124 133-249 (287)
132 PRK05134 bifunctional 3-demeth 99.2 2.9E-10 6.2E-15 89.0 10.4 96 25-121 47-152 (233)
133 PRK13256 thiopurine S-methyltr 99.2 5.4E-10 1.2E-14 87.9 11.2 111 10-121 28-164 (226)
134 KOG1271|consensus 99.1 3E-10 6.6E-15 86.0 9.0 119 3-121 41-182 (227)
135 PLN02366 spermidine synthase 99.1 5.9E-10 1.3E-14 91.4 11.4 97 25-121 90-207 (308)
136 PRK11933 yebU rRNA (cytosine-C 99.1 3.6E-10 7.8E-15 97.4 10.1 99 24-122 111-244 (470)
137 COG2520 Predicted methyltransf 99.1 4.4E-10 9.6E-15 92.9 10.1 113 5-120 170-289 (341)
138 PRK01581 speE spermidine synth 99.1 3.4E-10 7.4E-15 94.3 9.4 98 24-121 148-269 (374)
139 TIGR03438 probable methyltrans 99.1 8.5E-10 1.8E-14 90.1 11.1 97 25-121 62-178 (301)
140 PF08003 Methyltransf_9: Prote 99.1 5.3E-10 1.1E-14 90.8 9.4 105 14-119 104-218 (315)
141 PRK03612 spermidine synthase; 99.1 6.1E-10 1.3E-14 97.2 9.9 98 24-121 295-416 (521)
142 PTZ00338 dimethyladenosine tra 99.1 7.3E-10 1.6E-14 90.4 9.6 97 11-110 22-122 (294)
143 TIGR00417 speE spermidine synt 99.1 5E-10 1.1E-14 90.1 8.3 97 25-121 71-187 (270)
144 PF02475 Met_10: Met-10+ like- 99.1 1.9E-10 4.1E-15 88.9 5.6 107 5-116 84-198 (200)
145 cd02440 AdoMet_MTases S-adenos 99.1 7.6E-10 1.7E-14 73.5 7.8 91 29-119 1-103 (107)
146 PRK04338 N(2),N(2)-dimethylgua 99.1 5E-10 1.1E-14 94.3 8.3 97 26-122 57-160 (382)
147 TIGR00755 ksgA dimethyladenosi 99.1 1.6E-09 3.4E-14 86.4 10.7 102 11-115 15-121 (253)
148 PRK01544 bifunctional N5-gluta 99.1 9.8E-10 2.1E-14 95.7 9.9 96 26-122 138-271 (506)
149 TIGR02081 metW methionine bios 99.1 1.2E-09 2.7E-14 83.5 9.1 99 15-121 5-110 (194)
150 PRK14896 ksgA 16S ribosomal RN 99.0 3.5E-09 7.6E-14 84.7 11.3 86 12-100 16-102 (258)
151 TIGR00095 RNA methyltransferas 99.0 2.6E-09 5.7E-14 81.8 10.1 107 16-122 39-161 (189)
152 KOG1541|consensus 99.0 2.5E-09 5.4E-14 83.3 9.1 110 10-123 33-163 (270)
153 COG0144 Sun tRNA and rRNA cyto 99.0 3.7E-09 7.9E-14 88.3 10.9 112 10-121 140-289 (355)
154 PF03602 Cons_hypoth95: Conser 99.0 2.1E-10 4.6E-15 87.5 3.2 114 10-123 25-156 (183)
155 PRK00274 ksgA 16S ribosomal RN 99.0 2.4E-09 5.3E-14 86.2 9.5 85 12-98 29-114 (272)
156 PF05724 TPMT: Thiopurine S-me 99.0 2.1E-09 4.6E-14 84.1 8.3 107 8-115 20-150 (218)
157 PF07021 MetW: Methionine bios 99.0 1.6E-09 3.6E-14 82.7 7.2 99 16-122 6-111 (193)
158 KOG2915|consensus 98.9 7.4E-09 1.6E-13 82.7 9.6 104 14-119 94-209 (314)
159 KOG4300|consensus 98.9 2.9E-09 6.2E-14 82.2 7.0 95 26-120 76-182 (252)
160 COG0742 N6-adenine-specific me 98.9 2.2E-08 4.8E-13 76.3 11.0 115 9-123 25-157 (187)
161 TIGR00478 tly hemolysin TlyA f 98.9 8.8E-09 1.9E-13 81.2 8.6 109 10-123 56-174 (228)
162 COG4976 Predicted methyltransf 98.9 5.3E-10 1.1E-14 87.4 1.0 111 9-123 109-228 (287)
163 PHA03412 putative methyltransf 98.9 2.8E-08 6E-13 78.5 10.6 71 26-100 49-125 (241)
164 COG0030 KsgA Dimethyladenosine 98.9 2.3E-08 4.9E-13 80.0 10.1 100 13-113 18-119 (259)
165 PLN02672 methionine S-methyltr 98.9 9.5E-09 2.1E-13 95.6 8.9 72 27-98 119-212 (1082)
166 PHA03411 putative methyltransf 98.9 1.4E-08 3.1E-13 81.8 8.8 73 25-101 63-138 (279)
167 PLN02232 ubiquinone biosynthes 98.8 6.4E-09 1.4E-13 77.5 6.0 71 51-121 1-82 (160)
168 COG1092 Predicted SAM-dependen 98.8 6.5E-09 1.4E-13 87.6 6.6 107 14-123 208-339 (393)
169 PLN02823 spermine synthase 98.8 2.3E-08 5E-13 83.0 9.8 98 25-122 102-222 (336)
170 TIGR00308 TRM1 tRNA(guanine-26 98.7 4E-08 8.7E-13 82.6 8.5 94 28-122 46-149 (374)
171 PF01170 UPF0020: Putative RNA 98.7 4.1E-08 8.9E-13 74.6 7.6 93 8-100 10-117 (179)
172 PF02390 Methyltransf_4: Putat 98.7 3.3E-08 7.2E-13 76.1 6.7 98 26-123 17-136 (195)
173 PF09445 Methyltransf_15: RNA 98.7 6.8E-09 1.5E-13 77.7 2.7 70 28-97 1-77 (163)
174 PF10672 Methyltrans_SAM: S-ad 98.7 1E-08 2.3E-13 83.2 3.7 107 14-123 114-241 (286)
175 COG2263 Predicted RNA methylas 98.7 1.2E-07 2.6E-12 72.3 9.1 71 26-100 45-119 (198)
176 PF05219 DREV: DREV methyltran 98.7 1.7E-07 3.7E-12 74.7 9.3 108 3-121 71-189 (265)
177 PRK04148 hypothetical protein; 98.7 2.4E-07 5.2E-12 67.2 9.0 93 25-122 15-112 (134)
178 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.6 9.9E-08 2.1E-12 77.5 6.8 111 11-121 70-220 (283)
179 PF00891 Methyltransf_2: O-met 98.6 5.4E-07 1.2E-11 71.0 10.8 90 23-120 97-199 (241)
180 COG0421 SpeE Spermidine syntha 98.6 4.1E-07 8.8E-12 73.8 10.1 95 28-122 78-192 (282)
181 COG0220 Predicted S-adenosylme 98.6 5.3E-07 1.1E-11 71.0 9.8 98 27-124 49-168 (227)
182 KOG2904|consensus 98.6 8.1E-07 1.8E-11 71.3 10.6 109 13-121 133-286 (328)
183 PRK00050 16S rRNA m(4)C1402 me 98.6 1.3E-07 2.9E-12 77.1 6.1 88 10-100 4-101 (296)
184 KOG3010|consensus 98.5 1.8E-07 3.9E-12 73.7 6.3 95 25-119 31-135 (261)
185 COG3963 Phospholipid N-methylt 98.5 6.1E-07 1.3E-11 67.3 8.8 109 8-120 31-156 (194)
186 KOG2899|consensus 98.5 1.1E-07 2.5E-12 75.0 5.0 39 26-64 58-99 (288)
187 KOG1499|consensus 98.5 1.9E-07 4.1E-12 77.0 6.4 91 25-117 59-164 (346)
188 KOG2187|consensus 98.5 3.1E-07 6.8E-12 79.0 7.7 136 18-154 376-530 (534)
189 PF01564 Spermine_synth: Sperm 98.5 2.8E-07 6.1E-12 73.4 6.5 97 25-121 75-192 (246)
190 PF02384 N6_Mtase: N-6 DNA Met 98.5 3.7E-07 8.1E-12 74.5 7.0 110 12-121 32-184 (311)
191 PF02527 GidB: rRNA small subu 98.5 3.2E-07 7E-12 70.1 6.1 94 29-123 51-151 (184)
192 PRK00536 speE spermidine synth 98.4 2.3E-06 4.9E-11 68.8 10.0 96 24-122 70-173 (262)
193 KOG0820|consensus 98.4 1.8E-06 4E-11 69.2 9.3 83 12-97 45-131 (315)
194 PF10294 Methyltransf_16: Puta 98.4 1.1E-06 2.4E-11 66.3 7.7 97 25-122 44-158 (173)
195 PRK10611 chemotaxis methyltran 98.4 1.9E-06 4.1E-11 70.1 9.4 96 27-122 116-264 (287)
196 PRK11727 23S rRNA mA1618 methy 98.4 1.6E-06 3.4E-11 71.6 9.0 75 26-100 114-200 (321)
197 PF06080 DUF938: Protein of un 98.4 1.5E-06 3.4E-11 67.2 8.0 94 26-119 25-140 (204)
198 PF00398 RrnaAD: Ribosomal RNA 98.4 2.2E-06 4.7E-11 68.7 8.5 70 12-82 17-87 (262)
199 PRK10742 putative methyltransf 98.4 1.1E-06 2.3E-11 69.9 6.5 79 23-101 83-176 (250)
200 PF05185 PRMT5: PRMT5 arginine 98.4 1.9E-06 4.2E-11 74.1 8.4 90 27-117 187-294 (448)
201 PF03291 Pox_MCEL: mRNA cappin 98.3 2.1E-06 4.5E-11 71.2 7.3 98 26-123 62-189 (331)
202 COG4076 Predicted RNA methylas 98.3 1.4E-06 3.1E-11 66.6 5.7 90 26-117 32-132 (252)
203 PF01739 CheR: CheR methyltran 98.3 2.2E-06 4.8E-11 66.1 6.7 97 26-122 31-177 (196)
204 PF01728 FtsJ: FtsJ-like methy 98.3 7.4E-07 1.6E-11 67.2 3.9 103 10-121 2-140 (181)
205 KOG3420|consensus 98.3 1.7E-06 3.8E-11 63.5 5.5 89 11-100 30-125 (185)
206 PF05891 Methyltransf_PK: AdoM 98.2 2.6E-06 5.6E-11 66.4 6.2 94 26-121 55-162 (218)
207 PF12147 Methyltransf_20: Puta 98.2 1.3E-05 2.8E-10 65.0 10.2 107 14-120 123-249 (311)
208 PRK01544 bifunctional N5-gluta 98.2 6E-06 1.3E-10 72.1 8.7 98 26-123 347-465 (506)
209 PF01269 Fibrillarin: Fibrilla 98.2 8.4E-06 1.8E-10 63.8 8.4 107 11-121 56-179 (229)
210 PF13578 Methyltransf_24: Meth 98.2 1.8E-07 4E-12 64.5 -1.0 87 31-118 1-103 (106)
211 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.4E-05 3E-10 72.4 10.7 113 11-124 175-351 (702)
212 COG0357 GidB Predicted S-adeno 98.2 3.2E-06 6.8E-11 66.1 5.4 94 27-121 68-169 (215)
213 KOG1500|consensus 98.1 7.1E-06 1.5E-10 67.9 6.9 137 25-164 176-333 (517)
214 COG1352 CheR Methylase of chem 98.1 3.4E-05 7.4E-10 62.2 10.5 96 27-122 97-243 (268)
215 COG0116 Predicted N6-adenine-s 98.1 1.4E-05 3E-10 67.1 8.3 106 15-121 181-345 (381)
216 KOG3191|consensus 98.1 2.7E-05 5.9E-10 59.2 9.0 96 27-124 44-172 (209)
217 TIGR02987 met_A_Alw26 type II 98.1 2.1E-05 4.6E-10 68.8 9.3 74 26-99 31-122 (524)
218 KOG1122|consensus 98.0 1.2E-05 2.6E-10 67.9 6.7 97 25-121 240-372 (460)
219 COG4798 Predicted methyltransf 98.0 1.2E-05 2.5E-10 61.9 5.2 96 24-120 46-166 (238)
220 PRK11760 putative 23S rRNA C24 98.0 5.9E-05 1.3E-09 62.7 9.6 107 9-120 184-305 (357)
221 COG3897 Predicted methyltransf 98.0 2.7E-05 5.8E-10 59.9 6.9 93 25-121 78-179 (218)
222 COG0293 FtsJ 23S rRNA methylas 98.0 9.2E-05 2E-09 57.4 9.6 103 10-121 26-160 (205)
223 KOG2361|consensus 98.0 1.5E-05 3.2E-10 63.1 5.2 92 28-119 73-182 (264)
224 KOG2671|consensus 97.8 3.3E-05 7.2E-10 63.9 5.3 113 10-122 192-356 (421)
225 COG0500 SmtA SAM-dependent met 97.8 0.00019 4.1E-09 49.3 8.5 92 30-122 52-157 (257)
226 COG1064 AdhP Zn-dependent alco 97.8 5.7E-05 1.2E-09 62.7 6.6 89 24-119 164-258 (339)
227 KOG2730|consensus 97.8 3E-05 6.6E-10 60.6 4.4 73 26-98 94-174 (263)
228 COG4262 Predicted spermidine s 97.8 0.00015 3.3E-09 60.7 8.7 98 26-123 289-410 (508)
229 COG1889 NOP1 Fibrillarin-like 97.8 0.00016 3.4E-09 56.0 8.2 107 13-121 61-181 (231)
230 PF04816 DUF633: Family of unk 97.8 3.9E-05 8.4E-10 59.6 4.7 71 30-100 1-77 (205)
231 PF08123 DOT1: Histone methyla 97.7 9.5E-05 2.1E-09 57.4 6.2 107 11-118 28-156 (205)
232 TIGR00006 S-adenosyl-methyltra 97.7 7.3E-05 1.6E-09 61.3 5.8 88 10-99 5-102 (305)
233 KOG1975|consensus 97.7 8E-05 1.7E-09 61.3 5.7 100 25-124 116-241 (389)
234 PF05148 Methyltransf_8: Hypot 97.7 0.00025 5.3E-09 55.2 7.7 97 13-123 59-161 (219)
235 TIGR01444 fkbM_fam methyltrans 97.6 0.00012 2.5E-09 52.8 5.0 53 29-81 1-58 (143)
236 PF04445 SAM_MT: Putative SAM- 97.6 0.00018 3.9E-09 56.9 6.1 79 23-101 70-163 (234)
237 PF06962 rRNA_methylase: Putat 97.6 0.00017 3.8E-09 52.7 5.5 72 49-120 1-92 (140)
238 KOG2940|consensus 97.5 0.00013 2.8E-09 57.6 4.4 95 25-120 71-174 (325)
239 PF13679 Methyltransf_32: Meth 97.5 0.00065 1.4E-08 49.4 7.8 79 25-104 24-114 (141)
240 COG1189 Predicted rRNA methyla 97.5 0.0002 4.3E-09 56.6 5.1 111 10-123 60-181 (245)
241 PF03059 NAS: Nicotianamine sy 97.5 0.00029 6.2E-09 57.1 6.2 92 28-119 122-229 (276)
242 PF04989 CmcI: Cephalosporin h 97.4 0.001 2.2E-08 51.7 8.5 105 14-119 21-146 (206)
243 KOG3178|consensus 97.4 0.0013 2.9E-08 54.5 9.3 90 27-121 178-276 (342)
244 KOG2198|consensus 97.4 0.0011 2.3E-08 55.5 8.1 98 23-120 152-296 (375)
245 KOG1269|consensus 97.2 0.00042 9.1E-09 58.2 4.7 97 24-120 108-215 (364)
246 KOG1596|consensus 97.2 0.001 2.2E-08 52.9 6.4 105 13-121 141-262 (317)
247 TIGR03439 methyl_EasF probable 97.2 0.0029 6.2E-08 52.4 8.8 97 25-121 75-198 (319)
248 PF02005 TRM: N2,N2-dimethylgu 97.2 0.0005 1.1E-08 58.1 4.4 96 27-122 50-156 (377)
249 KOG3045|consensus 97.1 0.0025 5.4E-08 51.3 7.8 95 14-124 168-268 (325)
250 KOG3987|consensus 97.1 6.7E-05 1.5E-09 58.4 -1.2 104 11-121 95-208 (288)
251 PF01861 DUF43: Protein of unk 97.1 0.0021 4.6E-08 51.0 7.1 96 26-123 44-152 (243)
252 PF01555 N6_N4_Mtase: DNA meth 97.1 0.0011 2.4E-08 50.7 5.5 51 12-64 179-230 (231)
253 KOG1709|consensus 97.1 0.0038 8.2E-08 49.0 8.1 96 25-121 100-207 (271)
254 COG2384 Predicted SAM-dependen 97.1 0.0024 5.1E-08 50.0 6.9 76 25-100 15-96 (226)
255 COG0286 HsdM Type I restrictio 97.1 0.0043 9.4E-08 54.1 9.2 111 12-122 172-328 (489)
256 PF11968 DUF3321: Putative met 97.0 0.0029 6.4E-08 49.4 6.8 98 13-121 31-150 (219)
257 PF09243 Rsm22: Mitochondrial 97.0 0.0041 8.8E-08 50.3 7.9 78 26-104 33-117 (274)
258 PRK09880 L-idonate 5-dehydroge 96.9 0.003 6.4E-08 52.0 6.4 93 25-119 168-265 (343)
259 PRK11524 putative methyltransf 96.9 0.0027 5.9E-08 51.5 6.1 51 12-64 196-247 (284)
260 PF07942 N2227: N2227-like pro 96.8 0.014 3E-07 47.3 9.3 95 27-122 57-203 (270)
261 PF03141 Methyltransf_29: Puta 96.8 0.0024 5.1E-08 55.4 5.1 91 28-121 119-220 (506)
262 KOG1253|consensus 96.8 0.00059 1.3E-08 58.9 1.4 98 25-122 108-218 (525)
263 COG1867 TRM1 N2,N2-dimethylgua 96.7 0.0043 9.2E-08 52.0 6.2 96 27-122 53-156 (380)
264 PF01795 Methyltransf_5: MraW 96.6 0.0037 7.9E-08 51.5 4.9 88 10-99 5-103 (310)
265 PF07279 DUF1442: Protein of u 96.5 0.012 2.6E-07 46.0 6.8 106 13-118 28-146 (218)
266 PF00107 ADH_zinc_N: Zinc-bind 96.5 0.001 2.2E-08 46.9 0.8 85 35-123 1-92 (130)
267 PRK13699 putative methylase; P 96.5 0.0087 1.9E-07 47.1 6.1 50 13-64 152-202 (227)
268 cd08230 glucose_DH Glucose deh 96.5 0.0086 1.9E-07 49.4 6.4 92 25-119 171-268 (355)
269 COG0275 Predicted S-adenosylme 96.4 0.016 3.5E-07 47.5 7.7 88 10-99 8-106 (314)
270 KOG1331|consensus 96.4 0.0055 1.2E-07 49.7 4.6 102 14-121 33-144 (293)
271 PHA01634 hypothetical protein 96.2 0.016 3.5E-07 41.9 5.9 70 25-98 27-101 (156)
272 cd08254 hydroxyacyl_CoA_DH 6-h 96.1 0.021 4.5E-07 46.1 6.8 94 24-119 163-262 (338)
273 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.0 0.0081 1.8E-07 48.2 3.7 97 26-122 56-201 (256)
274 TIGR02822 adh_fam_2 zinc-bindi 96.0 0.068 1.5E-06 43.9 9.2 89 23-119 162-253 (329)
275 cd08283 FDH_like_1 Glutathione 95.9 0.1 2.2E-06 43.7 10.3 96 24-120 182-306 (386)
276 PF11599 AviRa: RRNA methyltra 95.8 0.0078 1.7E-07 47.2 2.8 50 14-64 40-94 (246)
277 KOG0023|consensus 95.8 0.015 3.2E-07 48.2 4.4 93 25-120 180-279 (360)
278 cd00315 Cyt_C5_DNA_methylase C 95.6 0.036 7.7E-07 44.8 5.9 68 29-100 2-73 (275)
279 KOG2352|consensus 95.5 0.16 3.4E-06 44.2 9.8 95 25-119 46-160 (482)
280 cd05188 MDR Medium chain reduc 95.4 0.073 1.6E-06 41.2 6.9 95 25-121 133-233 (271)
281 PF04672 Methyltransf_19: S-ad 95.3 0.14 3.1E-06 41.3 8.6 110 14-123 56-193 (267)
282 COG1063 Tdh Threonine dehydrog 95.3 0.1 2.2E-06 43.5 8.1 95 25-120 167-269 (350)
283 KOG1562|consensus 95.3 0.057 1.2E-06 44.3 6.3 95 25-119 120-235 (337)
284 cd08237 ribitol-5-phosphate_DH 95.2 0.073 1.6E-06 43.9 6.9 86 25-119 162-255 (341)
285 TIGR03366 HpnZ_proposed putati 95.2 0.086 1.9E-06 42.1 7.0 94 25-120 119-218 (280)
286 TIGR01202 bchC 2-desacetyl-2-h 95.1 0.098 2.1E-06 42.5 7.1 84 25-119 143-230 (308)
287 TIGR03451 mycoS_dep_FDH mycoth 95.0 0.058 1.3E-06 44.6 5.7 94 24-119 174-275 (358)
288 PF05971 Methyltransf_10: Prot 95.0 0.08 1.7E-06 43.5 6.4 77 28-104 104-192 (299)
289 KOG4589|consensus 95.0 0.21 4.5E-06 38.6 8.0 89 25-123 68-187 (232)
290 COG1568 Predicted methyltransf 94.8 0.022 4.7E-07 46.4 2.5 68 27-95 153-227 (354)
291 PRK09424 pntA NAD(P) transhydr 94.8 0.21 4.4E-06 44.0 8.7 95 25-121 163-286 (509)
292 KOG1227|consensus 94.8 0.019 4.1E-07 47.1 2.1 97 14-115 185-290 (351)
293 cd08281 liver_ADH_like1 Zinc-d 94.7 0.062 1.3E-06 44.7 5.0 93 24-119 189-289 (371)
294 KOG4058|consensus 94.5 0.087 1.9E-06 39.2 4.9 105 11-118 58-170 (199)
295 KOG0024|consensus 94.5 0.13 2.9E-06 42.7 6.4 94 25-120 168-273 (354)
296 KOG1501|consensus 94.5 0.051 1.1E-06 46.9 4.0 87 29-115 69-170 (636)
297 cd08232 idonate-5-DH L-idonate 94.4 0.16 3.5E-06 41.2 6.8 91 25-119 164-261 (339)
298 COG0604 Qor NADPH:quinone redu 94.1 0.16 3.5E-06 42.0 6.3 97 24-123 140-244 (326)
299 cd08255 2-desacetyl-2-hydroxye 93.9 0.68 1.5E-05 36.4 9.4 92 23-120 94-190 (277)
300 cd08239 THR_DH_like L-threonin 93.9 0.28 6.1E-06 39.9 7.3 94 24-119 161-261 (339)
301 TIGR03201 dearomat_had 6-hydro 93.8 0.31 6.8E-06 40.1 7.4 94 24-119 164-271 (349)
302 PF07091 FmrO: Ribosomal RNA m 93.7 0.39 8.5E-06 38.4 7.5 96 25-123 104-211 (251)
303 PLN02740 Alcohol dehydrogenase 93.6 0.28 6E-06 41.0 6.8 92 23-119 195-299 (381)
304 cd05285 sorbitol_DH Sorbitol d 93.5 0.71 1.5E-05 37.7 9.0 95 23-119 159-264 (343)
305 PF02254 TrkA_N: TrkA-N domain 93.2 0.27 5.8E-06 33.8 5.3 85 34-123 4-99 (116)
306 KOG1099|consensus 93.1 0.22 4.7E-06 39.7 5.1 86 26-120 41-163 (294)
307 KOG3201|consensus 93.1 0.048 1.1E-06 41.1 1.3 99 25-123 28-143 (201)
308 KOG3115|consensus 93.0 0.34 7.4E-06 37.9 5.9 96 26-121 60-184 (249)
309 cd08242 MDR_like Medium chain 92.9 1.1 2.5E-05 35.9 9.3 87 24-118 153-243 (319)
310 KOG2360|consensus 92.7 0.17 3.7E-06 42.8 4.2 78 23-100 210-295 (413)
311 cd08277 liver_alcohol_DH_like 92.6 0.54 1.2E-05 39.0 7.2 93 24-119 182-285 (365)
312 PRK11524 putative methyltransf 92.6 0.16 3.5E-06 41.1 4.0 53 70-122 6-82 (284)
313 TIGR02825 B4_12hDH leukotriene 92.6 0.57 1.2E-05 37.9 7.2 93 23-119 135-236 (325)
314 PRK10309 galactitol-1-phosphat 92.5 0.29 6.2E-06 40.1 5.4 94 24-119 158-259 (347)
315 PRK01747 mnmC bifunctional tRN 92.5 0.27 5.8E-06 44.4 5.5 95 26-120 57-206 (662)
316 cd08285 NADP_ADH NADP(H)-depen 92.1 0.66 1.4E-05 38.0 7.1 94 24-119 164-265 (351)
317 cd08261 Zn_ADH7 Alcohol dehydr 92.0 0.76 1.7E-05 37.3 7.3 95 23-119 156-257 (337)
318 PLN02514 cinnamyl-alcohol dehy 92.0 0.91 2E-05 37.6 7.8 93 25-119 179-274 (357)
319 cd08293 PTGR2 Prostaglandin re 91.9 0.87 1.9E-05 37.0 7.5 92 25-119 151-253 (345)
320 PLN03154 putative allyl alcoho 91.8 0.45 9.6E-06 39.4 5.7 93 24-119 156-257 (348)
321 cd08296 CAD_like Cinnamyl alco 91.7 0.6 1.3E-05 38.0 6.4 95 23-119 160-258 (333)
322 TIGR02819 fdhA_non_GSH formald 91.7 0.93 2E-05 38.3 7.7 93 23-119 182-298 (393)
323 TIGR02818 adh_III_F_hyde S-(hy 91.5 0.73 1.6E-05 38.3 6.7 94 24-120 183-287 (368)
324 cd08301 alcohol_DH_plants Plan 91.4 0.78 1.7E-05 38.0 6.8 94 23-119 184-288 (369)
325 cd08231 MDR_TM0436_like Hypoth 91.3 0.93 2E-05 37.2 7.2 93 25-119 176-279 (361)
326 COG5459 Predicted rRNA methyla 91.3 0.31 6.8E-06 41.1 4.2 98 26-123 113-228 (484)
327 cd08234 threonine_DH_like L-th 91.2 1.2 2.6E-05 35.9 7.7 93 23-119 156-256 (334)
328 PLN02827 Alcohol dehydrogenase 91.2 0.58 1.3E-05 39.2 5.9 93 24-119 191-294 (378)
329 PRK08306 dipicolinate synthase 91.2 0.9 1.9E-05 37.1 6.8 103 7-118 129-239 (296)
330 cd08238 sorbose_phosphate_red 91.1 1.1 2.5E-05 37.8 7.6 97 24-121 173-289 (410)
331 cd08245 CAD Cinnamyl alcohol d 91.0 2.5 5.4E-05 34.0 9.3 93 24-120 160-256 (330)
332 PLN02586 probable cinnamyl alc 91.0 1 2.3E-05 37.3 7.2 91 25-119 182-277 (360)
333 PLN02178 cinnamyl-alcohol dehy 90.9 0.58 1.3E-05 39.2 5.6 91 25-119 177-272 (375)
334 cd08298 CAD2 Cinnamyl alcohol 90.8 2.5 5.5E-05 34.0 9.1 86 24-118 165-254 (329)
335 cd05278 FDH_like Formaldehyde 90.7 0.49 1.1E-05 38.4 4.9 94 24-119 165-266 (347)
336 COG1255 Uncharacterized protei 90.6 1.8 3.8E-05 30.8 6.8 86 27-122 14-105 (129)
337 cd08294 leukotriene_B4_DH_like 90.3 0.68 1.5E-05 37.2 5.4 93 23-119 140-240 (329)
338 COG0863 DNA modification methy 90.1 0.89 1.9E-05 36.4 5.9 50 13-64 211-261 (302)
339 cd08286 FDH_like_ADH2 formalde 89.9 1.4 3E-05 35.8 6.9 94 24-119 164-265 (345)
340 cd00401 AdoHcyase S-adenosyl-L 89.8 1.2 2.7E-05 38.2 6.7 84 25-119 200-288 (413)
341 cd08295 double_bond_reductase_ 89.8 2.5 5.4E-05 34.4 8.4 94 23-119 148-250 (338)
342 PF11899 DUF3419: Protein of u 89.6 0.65 1.4E-05 39.4 4.8 49 18-67 28-77 (380)
343 PF02086 MethyltransfD12: D12 89.4 0.45 9.8E-06 37.3 3.6 53 11-64 6-59 (260)
344 cd08233 butanediol_DH_like (2R 89.4 1.8 3.9E-05 35.4 7.3 94 24-119 170-271 (351)
345 PF03141 Methyltransf_29: Puta 89.4 0.51 1.1E-05 41.3 4.1 88 27-119 366-466 (506)
346 KOG2078|consensus 89.3 0.26 5.6E-06 42.4 2.2 70 10-82 236-310 (495)
347 cd05281 TDH Threonine dehydrog 89.3 1.4 3E-05 35.9 6.5 93 25-119 162-261 (341)
348 cd08236 sugar_DH NAD(P)-depend 89.3 2.2 4.8E-05 34.6 7.7 93 23-119 156-257 (343)
349 PRK03659 glutathione-regulated 88.5 1.6 3.6E-05 39.1 6.8 85 34-123 406-501 (601)
350 PRK09422 ethanol-active dehydr 88.4 2.7 5.9E-05 33.9 7.6 95 23-119 159-260 (338)
351 cd08300 alcohol_DH_class_III c 88.4 1.6 3.5E-05 36.1 6.4 93 24-119 184-287 (368)
352 TIGR00692 tdh L-threonine 3-de 88.1 2.9 6.3E-05 34.0 7.7 93 25-119 160-260 (340)
353 PRK10669 putative cation:proto 88.1 2.3 5E-05 37.7 7.5 85 33-122 421-517 (558)
354 TIGR00497 hsdM type I restrict 88.1 3.2 7E-05 36.4 8.3 73 25-97 216-301 (501)
355 cd05284 arabinose_DH_like D-ar 88.0 2.2 4.8E-05 34.5 6.8 93 25-119 166-265 (340)
356 COG2961 ComJ Protein involved 87.8 3.1 6.7E-05 33.5 7.2 90 10-100 73-167 (279)
357 KOG2352|consensus 87.6 1.3 2.9E-05 38.6 5.4 98 26-123 295-419 (482)
358 TIGR00675 dcm DNA-methyltransf 86.9 1.1 2.3E-05 37.0 4.3 66 30-99 1-69 (315)
359 PRK10458 DNA cytosine methylas 86.9 5.3 0.00011 34.9 8.8 38 27-64 88-127 (467)
360 cd08278 benzyl_alcohol_DH Benz 86.6 3.1 6.7E-05 34.4 7.1 91 24-119 184-284 (365)
361 cd08263 Zn_ADH10 Alcohol dehyd 86.5 3.6 7.8E-05 33.9 7.4 92 25-120 186-287 (367)
362 PF03686 UPF0146: Uncharacteri 86.0 1.8 3.9E-05 31.1 4.6 88 26-123 13-106 (127)
363 TIGR00561 pntA NAD(P) transhyd 85.9 5.7 0.00012 35.1 8.6 93 26-120 163-284 (511)
364 PRK10083 putative oxidoreducta 85.4 4.2 9.2E-05 32.9 7.2 94 24-119 158-258 (339)
365 cd05283 CAD1 Cinnamyl alcohol 85.3 9.8 0.00021 30.9 9.3 92 24-119 167-262 (337)
366 PRK13699 putative methylase; P 85.3 0.94 2E-05 35.6 3.2 49 73-121 2-73 (227)
367 KOG2651|consensus 85.2 2.4 5.3E-05 36.2 5.6 51 14-64 138-193 (476)
368 cd08243 quinone_oxidoreductase 85.1 4.8 0.0001 31.8 7.3 91 24-119 140-237 (320)
369 cd08297 CAD3 Cinnamyl alcohol 84.9 4.3 9.3E-05 32.9 7.0 96 23-120 162-265 (341)
370 PF00145 DNA_methylase: C-5 cy 84.8 1.4 3E-05 35.4 4.1 67 29-100 2-72 (335)
371 PF06859 Bin3: Bicoid-interact 84.6 0.17 3.7E-06 35.4 -1.2 31 89-119 1-43 (110)
372 cd05565 PTS_IIB_lactose PTS_II 84.2 1.1 2.5E-05 30.7 2.8 78 29-121 2-79 (99)
373 COG1004 Ugd Predicted UDP-gluc 84.0 1.1 2.4E-05 38.3 3.2 31 34-64 6-40 (414)
374 COG4017 Uncharacterized protei 84.0 4.6 9.9E-05 31.5 6.2 80 25-114 43-124 (254)
375 KOG1198|consensus 83.7 2.1 4.7E-05 35.8 4.8 95 25-121 156-257 (347)
376 cd08279 Zn_ADH_class_III Class 83.5 5.7 0.00012 32.7 7.2 92 24-119 180-281 (363)
377 PRK03562 glutathione-regulated 83.5 4.4 9.5E-05 36.6 6.9 84 34-122 406-500 (621)
378 PLN02702 L-idonate 5-dehydroge 83.3 7.9 0.00017 31.8 8.0 94 24-119 179-284 (364)
379 PRK05396 tdh L-threonine 3-deh 83.0 4.1 9E-05 33.0 6.2 94 25-120 162-263 (341)
380 COG1565 Uncharacterized conser 82.9 3.8 8.2E-05 34.7 5.8 61 4-64 48-126 (370)
381 cd08269 Zn_ADH9 Alcohol dehydr 81.8 12 0.00025 29.6 8.3 93 23-119 126-228 (312)
382 cd05279 Zn_ADH1 Liver alcohol 81.3 7.4 0.00016 32.2 7.2 93 24-119 181-284 (365)
383 cd08291 ETR_like_1 2-enoyl thi 81.3 5.2 0.00011 32.2 6.1 90 26-120 142-242 (324)
384 KOG0822|consensus 81.2 3.9 8.4E-05 36.4 5.5 68 49-117 397-475 (649)
385 cd08262 Zn_ADH8 Alcohol dehydr 81.2 10 0.00022 30.6 7.9 92 24-119 159-263 (341)
386 PRK09496 trkA potassium transp 81.0 16 0.00034 31.1 9.2 82 13-98 216-306 (453)
387 cd05564 PTS_IIB_chitobiose_lic 80.9 1.1 2.4E-05 30.3 1.8 78 30-122 2-79 (96)
388 TIGR00745 apbA_panE 2-dehydrop 80.3 10 0.00022 30.1 7.4 82 37-120 4-93 (293)
389 cd05289 MDR_like_2 alcohol deh 80.3 14 0.00029 28.8 8.1 91 24-120 142-238 (309)
390 PF05430 Methyltransf_30: S-ad 80.2 0.31 6.8E-06 34.8 -1.2 49 72-120 32-90 (124)
391 cd08284 FDH_like_2 Glutathione 80.2 8.2 0.00018 31.2 7.0 91 24-119 165-265 (344)
392 cd08265 Zn_ADH3 Alcohol dehydr 80.0 4.9 0.00011 33.5 5.7 95 23-119 200-306 (384)
393 cd08240 6_hydroxyhexanoate_dh_ 79.8 16 0.00035 29.7 8.6 90 25-119 174-273 (350)
394 PRK05786 fabG 3-ketoacyl-(acyl 79.8 13 0.00029 28.2 7.7 72 26-99 4-91 (238)
395 cd08274 MDR9 Medium chain dehy 79.8 19 0.00041 29.1 9.0 90 24-119 175-272 (350)
396 PRK05476 S-adenosyl-L-homocyst 79.6 5.3 0.00012 34.5 5.8 83 26-119 211-298 (425)
397 PF03721 UDPG_MGDP_dh_N: UDP-g 79.5 1.5 3.1E-05 33.4 2.2 31 34-64 6-40 (185)
398 cd08235 iditol_2_DH_like L-idi 79.1 26 0.00056 28.2 9.6 94 23-120 162-265 (343)
399 cd05286 QOR2 Quinone oxidoredu 78.9 16 0.00035 28.5 8.1 91 24-119 134-234 (320)
400 COG0270 Dcm Site-specific DNA 78.9 5.6 0.00012 32.9 5.6 71 27-100 3-78 (328)
401 COG0771 MurD UDP-N-acetylmuram 78.1 10 0.00022 33.0 7.1 71 27-100 7-80 (448)
402 TIGR00853 pts-lac PTS system, 78.0 2.4 5.3E-05 28.7 2.7 80 28-122 4-83 (95)
403 COG4098 comFA Superfamily II D 77.8 43 0.00094 28.6 10.4 114 8-124 100-244 (441)
404 PRK08324 short chain dehydroge 77.7 6 0.00013 36.0 5.9 71 27-99 422-508 (681)
405 PF14740 DUF4471: Domain of un 77.7 1.6 3.4E-05 35.8 1.9 48 73-120 202-254 (289)
406 PF04378 RsmJ: Ribosomal RNA s 77.7 3.8 8.2E-05 32.8 4.1 91 10-101 42-137 (245)
407 cd08258 Zn_ADH4 Alcohol dehydr 77.1 9.3 0.0002 30.7 6.4 95 24-120 162-264 (306)
408 cd08270 MDR4 Medium chain dehy 77.1 34 0.00073 26.9 10.0 88 25-120 131-222 (305)
409 PF10237 N6-adenineMlase: Prob 77.0 28 0.00061 26.0 8.4 89 25-123 24-126 (162)
410 PRK15001 SAM-dependent 23S rib 76.7 18 0.00039 30.8 8.1 100 13-119 31-141 (378)
411 COG0569 TrkA K+ transport syst 76.6 6.9 0.00015 30.6 5.3 61 34-97 6-74 (225)
412 PRK13771 putative alcohol dehy 76.5 6 0.00013 31.9 5.1 92 23-120 159-255 (334)
413 cd08260 Zn_ADH6 Alcohol dehydr 76.4 9.7 0.00021 30.9 6.3 93 24-119 163-263 (345)
414 TIGR00936 ahcY adenosylhomocys 76.2 12 0.00026 32.1 7.0 84 25-119 193-281 (406)
415 KOG2782|consensus 76.0 2.3 4.9E-05 33.8 2.3 57 7-64 25-84 (303)
416 PF05711 TylF: Macrocin-O-meth 75.9 9 0.0002 30.7 5.8 94 26-119 74-211 (248)
417 COG0686 Ald Alanine dehydrogen 75.8 10 0.00022 31.7 6.2 120 34-155 174-304 (371)
418 TIGR02817 adh_fam_1 zinc-bindi 75.7 10 0.00023 30.4 6.3 91 27-119 149-246 (336)
419 cd08256 Zn_ADH2 Alcohol dehydr 75.7 15 0.00032 30.0 7.3 92 24-119 172-273 (350)
420 PLN02494 adenosylhomocysteinas 75.6 11 0.00024 33.1 6.7 83 26-119 253-340 (477)
421 TIGR00518 alaDH alanine dehydr 75.5 13 0.00027 31.4 6.9 92 26-120 166-267 (370)
422 KOG2793|consensus 75.1 18 0.00039 29.0 7.3 95 26-120 86-199 (248)
423 cd08267 MDR1 Medium chain dehy 74.8 23 0.00051 27.8 8.1 93 24-120 141-240 (319)
424 KOG3924|consensus 74.7 9.8 0.00021 32.6 5.9 108 10-119 177-307 (419)
425 COG1062 AdhC Zn-dependent alco 74.6 16 0.00034 30.9 7.0 98 16-119 176-284 (366)
426 TIGR02853 spore_dpaA dipicolin 74.4 10 0.00022 30.8 5.9 108 7-123 128-242 (287)
427 PRK06522 2-dehydropantoate 2-r 73.9 23 0.00051 28.2 7.9 86 34-119 6-99 (304)
428 cd08244 MDR_enoyl_red Possible 73.5 35 0.00076 27.0 8.8 92 24-120 140-241 (324)
429 TIGR01470 cysG_Nterm siroheme 73.0 15 0.00033 28.2 6.4 90 26-123 8-103 (205)
430 PF11899 DUF3419: Protein of u 72.9 3.3 7.2E-05 35.2 2.8 50 69-118 273-332 (380)
431 COG4627 Uncharacterized protei 72.9 0.57 1.2E-05 35.1 -1.6 41 84-124 42-90 (185)
432 cd08299 alcohol_DH_class_I_II_ 72.8 13 0.00028 30.9 6.3 92 24-119 188-291 (373)
433 cd08287 FDH_like_ADH3 formalde 72.7 28 0.0006 28.1 8.1 93 23-119 165-267 (345)
434 cd08241 QOR1 Quinone oxidoredu 72.5 17 0.00036 28.5 6.7 93 24-119 137-237 (323)
435 PF10354 DUF2431: Domain of un 71.4 23 0.00049 26.4 6.7 86 38-123 9-128 (166)
436 cd08282 PFDH_like Pseudomonas 71.2 22 0.00048 29.4 7.3 92 24-118 174-283 (375)
437 PRK09496 trkA potassium transp 70.9 29 0.00062 29.5 8.1 83 34-120 6-99 (453)
438 cd08289 MDR_yhfp_like Yhfp put 70.8 16 0.00036 29.0 6.3 91 26-120 146-243 (326)
439 PTZ00075 Adenosylhomocysteinas 70.5 10 0.00022 33.2 5.3 83 26-119 253-340 (476)
440 PRK10310 PTS system galactitol 70.0 11 0.00023 25.3 4.3 16 29-44 4-19 (94)
441 KOG2920|consensus 69.9 5.6 0.00012 32.5 3.3 38 25-62 115-154 (282)
442 PF07757 AdoMet_MTase: Predict 69.9 10 0.00022 26.6 4.2 44 14-57 43-90 (112)
443 PRK00421 murC UDP-N-acetylmura 69.7 18 0.0004 31.1 6.7 93 25-124 5-117 (461)
444 PRK05562 precorrin-2 dehydroge 69.7 47 0.001 26.1 8.4 90 26-123 24-119 (223)
445 cd08251 polyketide_synthase po 69.6 22 0.00047 27.6 6.7 94 23-119 117-218 (303)
446 cd08292 ETR_like_2 2-enoyl thi 69.4 41 0.00089 26.6 8.4 91 24-119 137-237 (324)
447 cd05213 NAD_bind_Glutamyl_tRNA 69.0 39 0.00085 27.6 8.3 88 26-122 177-274 (311)
448 cd05282 ETR_like 2-enoyl thioe 69.0 36 0.00077 26.9 7.9 92 25-119 137-236 (323)
449 cd08252 AL_MDR Arginate lyase 68.9 20 0.00043 28.7 6.4 91 27-119 150-247 (336)
450 PF05206 TRM13: Methyltransfer 67.8 12 0.00026 30.2 4.8 50 10-60 3-60 (259)
451 PRK05708 2-dehydropantoate 2-r 67.8 33 0.00072 27.9 7.6 91 28-120 3-104 (305)
452 PRK11064 wecC UDP-N-acetyl-D-m 67.0 7.1 0.00015 33.4 3.6 30 34-63 9-42 (415)
453 cd08276 MDR7 Medium chain dehy 66.9 38 0.00082 26.9 7.7 93 24-119 158-258 (336)
454 COG1023 Gnd Predicted 6-phosph 66.8 16 0.00034 29.6 5.1 90 34-124 6-122 (300)
455 PRK06249 2-dehydropantoate 2-r 66.7 25 0.00055 28.6 6.7 90 27-120 5-106 (313)
456 PRK10754 quinone oxidoreductas 66.4 34 0.00074 27.3 7.4 92 24-120 138-239 (327)
457 cd08248 RTN4I1 Human Reticulon 66.4 13 0.00028 30.1 4.9 90 26-119 162-256 (350)
458 PTZ00354 alcohol dehydrogenase 66.3 57 0.0012 25.9 8.6 93 24-119 138-239 (334)
459 cd08259 Zn_ADH5 Alcohol dehydr 65.9 32 0.0007 27.3 7.1 92 24-120 160-256 (332)
460 cd05288 PGDH Prostaglandin deh 65.7 16 0.00034 29.2 5.2 92 25-119 144-243 (329)
461 COG3510 CmcI Cephalosporin hyd 64.9 21 0.00045 27.9 5.4 101 15-119 59-179 (237)
462 PRK09590 celB cellobiose phosp 64.6 9.3 0.0002 26.3 3.2 78 29-121 3-82 (104)
463 PF03269 DUF268: Caenorhabditi 64.2 9.7 0.00021 28.8 3.4 78 41-122 18-113 (177)
464 cd01080 NAD_bind_m-THF_DH_Cycl 63.4 51 0.0011 24.6 7.2 91 8-124 25-119 (168)
465 PRK08534 pyruvate ferredoxin o 63.3 36 0.00078 25.4 6.5 72 43-120 25-97 (181)
466 PF02636 Methyltransf_28: Puta 63.1 9.3 0.0002 30.2 3.4 37 28-64 20-67 (252)
467 KOG1197|consensus 63.1 46 0.001 27.3 7.2 94 25-122 145-246 (336)
468 cd08273 MDR8 Medium chain dehy 63.1 52 0.0011 26.1 7.8 92 24-120 137-233 (331)
469 PRK14029 pyruvate/ketoisovaler 62.8 42 0.00091 25.2 6.8 67 47-120 29-97 (185)
470 PRK01438 murD UDP-N-acetylmura 62.4 27 0.00058 30.1 6.4 68 26-100 15-89 (480)
471 PF02558 ApbA: Ketopantoate re 62.0 8 0.00017 27.6 2.6 86 34-121 4-102 (151)
472 COG2130 Putative NADP-dependen 61.4 21 0.00046 29.7 5.1 92 25-118 149-247 (340)
473 KOG2539|consensus 61.1 33 0.00071 30.2 6.5 98 26-124 200-319 (491)
474 cd08246 crotonyl_coA_red croto 61.1 25 0.00054 29.3 5.8 93 24-119 191-314 (393)
475 PF02719 Polysacc_synt_2: Poly 60.5 10 0.00023 31.1 3.3 70 34-103 5-91 (293)
476 COG3129 Predicted SAM-dependen 60.3 40 0.00087 27.2 6.3 76 26-104 78-168 (292)
477 KOG2798|consensus 59.8 26 0.00057 29.3 5.4 47 15-61 132-186 (369)
478 PRK08945 putative oxoacyl-(acy 59.7 33 0.00072 26.2 5.9 74 26-99 11-102 (247)
479 PRK04308 murD UDP-N-acetylmura 59.6 41 0.00088 28.7 6.9 95 27-124 5-120 (445)
480 cd05280 MDR_yhdh_yhfp Yhdh and 59.5 18 0.00039 28.7 4.5 90 27-120 147-243 (325)
481 cd01078 NAD_bind_H4MPT_DH NADP 58.5 74 0.0016 23.7 7.9 93 26-121 27-129 (194)
482 PRK12429 3-hydroxybutyrate deh 58.5 32 0.00069 26.3 5.7 71 27-99 4-91 (258)
483 PRK07890 short chain dehydroge 58.3 21 0.00046 27.4 4.6 73 26-99 4-92 (258)
484 PRK05844 pyruvate flavodoxin o 58.2 48 0.001 24.9 6.4 67 47-120 29-97 (186)
485 cd08253 zeta_crystallin Zeta-c 58.0 55 0.0012 25.5 7.1 94 24-120 142-243 (325)
486 cd08247 AST1_like AST1 is a cy 57.9 93 0.002 25.2 8.6 93 24-121 149-260 (352)
487 PRK06940 short chain dehydroge 57.3 30 0.00064 27.3 5.4 67 33-100 7-87 (275)
488 PRK06274 indolepyruvate oxidor 57.1 34 0.00075 25.8 5.5 69 45-121 28-97 (197)
489 TIGR03589 PseB UDP-N-acetylglu 56.8 27 0.00059 28.4 5.2 72 27-99 4-84 (324)
490 PF02826 2-Hacid_dh_C: D-isome 56.7 6.3 0.00014 29.4 1.3 81 26-117 35-124 (178)
491 PRK07201 short chain dehydroge 56.6 28 0.0006 31.1 5.6 66 34-99 7-87 (657)
492 PRK11908 NAD-dependent epimera 56.4 37 0.00081 27.6 6.0 65 29-98 3-77 (347)
493 COG0373 HemA Glutamyl-tRNA red 56.0 34 0.00073 29.6 5.7 110 7-123 158-276 (414)
494 PLN00203 glutamyl-tRNA reducta 56.0 85 0.0018 27.9 8.4 112 7-122 244-370 (519)
495 COG0677 WecC UDP-N-acetyl-D-ma 55.5 18 0.00039 31.2 3.9 31 34-64 15-49 (436)
496 PLN02353 probable UDP-glucose 55.5 34 0.00074 30.0 5.8 31 34-64 7-43 (473)
497 PLN02427 UDP-apiose/xylose syn 55.3 32 0.00069 28.6 5.5 70 27-99 14-96 (386)
498 TIGR02175 PorC_KorC 2-oxoacid: 55.2 45 0.00097 24.8 5.8 68 46-120 28-97 (177)
499 PLN02206 UDP-glucuronate decar 55.1 35 0.00075 29.4 5.8 70 26-98 118-192 (442)
500 cd08290 ETR 2-enoyl thioester 54.8 28 0.0006 28.0 4.9 93 24-120 144-251 (341)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-37 Score=237.98 Aligned_cols=152 Identities=26% Similarity=0.321 Sum_probs=143.4
Q ss_pred cCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC
Q psy8015 7 SGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS 83 (165)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~ 83 (165)
..|.|.++++|+++|. .+|+++|||| |||||.|+.||+++++|+++|+++++++.|+ ++.+|+.||.+++||+..+
T Consensus 54 tis~P~~vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G 132 (209)
T COG2518 54 TISAPHMVARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG 132 (209)
T ss_pred eecCcHHHHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence 4578999999999996 4999999999 9999999999999999999999999999996 8999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC
Q psy8015 84 FGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS 160 (165)
Q Consensus 84 ~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~ 160 (165)
|++.++||+|+++++.+.+|+.|.+||||||+|++|++..+.|.+.+++|.+++.+..+.+++++|+||.++. .|+
T Consensus 133 ~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~~-~~~ 208 (209)
T COG2518 133 WPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVPLVGGD-GFF 208 (209)
T ss_pred CCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeeecCCcc-ccc
Confidence 9999999999999999999999999999999999999976679999999998888999999999999999964 554
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=100.00 E-value=1.6e-33 Score=218.66 Aligned_cols=150 Identities=25% Similarity=0.304 Sum_probs=127.1
Q ss_pred ecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhcc--cccCCCCCeEEEEcc
Q psy8015 6 VSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPL--SSTIDPDHDYDLIAD 79 (165)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD 79 (165)
++.|+|..+++|+++|. ++|+++|||| |||||+|+.||++++ +|+++|+++++++.|+ ++.++..||+++++|
T Consensus 53 ~~is~P~~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 53 QTISAPSMVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp EEE--HHHHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred eechHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 35579999999999996 6999999999 999999999999974 6999999999999996 778889999999999
Q ss_pred CCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCC
Q psy8015 80 GRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVK 156 (165)
Q Consensus 80 ~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~ 156 (165)
+..++++.++||+|+++++.+.+|+.|+++||+||+||+|+++...|.+.+++|.+++.|+.+.++.|.|+||++.+
T Consensus 132 g~~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~~~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 132 GSEGWPEEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIGQGGSQRLVRITKKGDGEFSREELFPVRFVPLVGGE 208 (209)
T ss_dssp GGGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESSSSSEEEEEEEEETTTEEEEEEEEEE---B-BSCC
T ss_pred hhhccccCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEccCCceEEEEEEEeCCCcEEEEEEeeEEEEeccCCC
Confidence 99999888999999999999999999999999999999999985559999999998889999999999999999874
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.96 E-value=2.2e-27 Score=184.73 Aligned_cols=147 Identities=26% Similarity=0.331 Sum_probs=132.9
Q ss_pred cCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccC
Q psy8015 7 SGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADG 80 (165)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~ 80 (165)
+.|.+..++++++.+. ..++++|||| |||||+|+.+++.. ++|+++|+++++++.|+ +++.+.+|++++++|+
T Consensus 58 ~~~~p~~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~ 136 (212)
T PRK13942 58 TISAIHMVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG 136 (212)
T ss_pred EeCcHHHHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence 3478899999999995 5899999999 99999999999886 58999999999999996 6677888999999999
Q ss_pred CCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCC
Q psy8015 81 RASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVK 156 (165)
Q Consensus 81 ~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~ 156 (165)
...+++.++||+|+++++.+++|+.+.++|||||++++++++. .+.+.+++|.+ +.++.+.++++.|+||.+..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~ 210 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSY-SQELIRVEKDN-GKIIKKKLGEVAFVPLIGKN 210 (212)
T ss_pred ccCCCcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEcCC-CcEEEEEEEEC-CEEEEEEeccEEEEecccCC
Confidence 8877777899999999999999999999999999999999875 58999999975 68999999999999999874
No 4
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.95 E-value=9.5e-27 Score=181.18 Aligned_cols=149 Identities=27% Similarity=0.318 Sum_probs=132.9
Q ss_pred CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCc---EEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC
Q psy8015 9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPN---SFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA 82 (165)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~---V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~ 82 (165)
+.+..++++++++. .+++++|||| ||+|++|+.|++..+. |+++|+++++++.|+ +++.+++|++++.+|+.+
T Consensus 61 ~~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 61 SAPHMVAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred chHHHHHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 46778899999985 5899999999 9999999999998754 999999999999996 677788899999999987
Q ss_pred CCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC
Q psy8015 83 SFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS 160 (165)
Q Consensus 83 ~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~ 160 (165)
.++..++||+|++++..+++|+.+.++|+|||++++++++ +.+.+..++|.+ +.|..+.++++.|.||++++.+|+
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~ 215 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE-YLQVLKRAEKRG-GEIIIKDVEPVAFVPLVGGEGFQG 215 (215)
T ss_pred CCcccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEcC-CceEEEEEEEeC-CEEEEEEeeeEEEEeCCCCccCCC
Confidence 7666678999999999999999999999999999999987 568999998865 579999999999999999886663
No 5
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.94 E-value=7.6e-26 Score=175.11 Aligned_cols=143 Identities=22% Similarity=0.218 Sum_probs=125.6
Q ss_pred CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCC
Q psy8015 9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGR 81 (165)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~ 81 (165)
+.+..++++++++. ..++++|||+ ||+|+.++.+++.. ++|+++|+++++++.|+ +++.+.. +++++.+|+.
T Consensus 56 ~~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 56 SAPHMVAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred chHHHHHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 35677899999985 4789999999 99999999999875 68999999999999985 5666765 5999999998
Q ss_pred CCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeec
Q psy8015 82 ASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLY 153 (165)
Q Consensus 82 ~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~ 153 (165)
+.++..++||+|+++++.+++|+++.++|+|||+|++++++...|.+..++|.+ +.|+.+.++.|.|+||.
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~pl~ 205 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGVGQVLYKVVKRG-EKVEKRAITYVLFVPLR 205 (205)
T ss_pred cCCccCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEEcCCCceEEEEEEEeC-CEEEEEEeceEEEEecC
Confidence 777666799999999999999999999999999999999876568899999965 57999999999999984
No 6
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.93 E-value=6.4e-25 Score=170.31 Aligned_cols=146 Identities=25% Similarity=0.290 Sum_probs=130.1
Q ss_pred CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015 9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG 85 (165)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~ 85 (165)
|.+...+++++.+. ..++++|||+ ||+|+++..++++.++|+++|+++++++.|+ +++.++.|++++.+|+.+.++
T Consensus 62 ~~p~~~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 62 SQPYMVARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred CcHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC
Confidence 57788999999885 4789999999 9999999999998889999999999999996 667788899999999877766
Q ss_pred CCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCC
Q psy8015 86 DNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVK 156 (165)
Q Consensus 86 ~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~ 156 (165)
..++||+|+++...+++++.+.++|+|||+++++.++.+.+.+.+++|. ++.|..+.++++.|.|+.++.
T Consensus 141 ~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~ 210 (212)
T PRK00312 141 AYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGGEEQQLLTRVRKR-GGRFEREVLEEVRFVPLVKGE 210 (212)
T ss_pred cCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEcCCCceEEEEEEEc-CCeEEEEEEccEEEEecCCCC
Confidence 6689999999999999999999999999999999985555888888885 467999999999999999874
No 7
>KOG1661|consensus
Probab=99.90 E-value=1.1e-22 Score=155.75 Aligned_cols=152 Identities=27% Similarity=0.383 Sum_probs=133.2
Q ss_pred CchHHHHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhccCC----cEEEEeCCHHHHHhcc--cc----------cCCC
Q psy8015 9 SVSGAVAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTFIP----NSFNINVYYYLSGGPL--SS----------TIDP 70 (165)
Q Consensus 9 ~~~~~~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~~~----~V~aiD~~~~~~~~A~--~~----------~~~~ 70 (165)
|-+.+.+..++.|..+ .||.+.||+ +||||+|++++++++ .+++||..+++++.++ ++ .+..
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 5678899999998732 799999999 999999999998762 3599999999999984 22 2234
Q ss_pred CCeEEEEccCCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEE
Q psy8015 71 DHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQV 149 (165)
Q Consensus 71 ~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~ 149 (165)
.++.++.||+..++++.++||+|+++++.+.+|+++.++|++||+|++|.++.+. |....+.|..++....+.+|.+.+
T Consensus 144 ~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~y 223 (237)
T KOG1661|consen 144 GELSIVVGDGRKGYAEQAPYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRY 223 (237)
T ss_pred CceEEEeCCccccCCccCCcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEE
Confidence 5789999999999999999999999999999999999999999999999997655 888888898888999999999999
Q ss_pred eeeccCCCCCC
Q psy8015 150 GLLYDVKAGYS 160 (165)
Q Consensus 150 ~pl~~~~~~~~ 160 (165)
+|++.....|+
T Consensus 224 vPlt~~~~q~~ 234 (237)
T KOG1661|consen 224 VPLTSRESQPS 234 (237)
T ss_pred EeccccccccC
Confidence 99999876664
No 8
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.87 E-value=3.8e-21 Score=158.02 Aligned_cols=148 Identities=15% Similarity=0.203 Sum_probs=126.4
Q ss_pred EecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhcc--cccCCCCCeEEEEc
Q psy8015 5 FVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPL--SSTIDPDHDYDLIA 78 (165)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g 78 (165)
|++.+.|...+++++++. .+++++|||+ ||+|++++.+++.++ +|+++|+++++++.|+ ++..+.+|++++.+
T Consensus 60 ~~~~~~p~l~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g 138 (322)
T PRK13943 60 YSTSSQPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG 138 (322)
T ss_pred cccCCcHHHHHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 456778999999999985 4789999999 999999999998764 5999999999999996 56678889999999
Q ss_pred cCCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCC--CceEEEEEEEccCCcEEEEEeeeEEEeeecc
Q psy8015 79 DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT--KQQMLTIYDKFHNGTIDIQHWGVVQVGLLYD 154 (165)
Q Consensus 79 D~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~--~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~ 154 (165)
|+.+.+++.++||+|+++.+.+++|+.+.++|+|||+++++.+.. ..+.....+|.. +.++....++++|.+..+
T Consensus 139 D~~~~~~~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~~-~~~~~~~~~~~~~l~~~G 215 (322)
T PRK13943 139 DGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKD-PYLVGNYKLETRFIKAGG 215 (322)
T ss_pred ChhhcccccCCccEEEECCchHHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEecC-CCceEEEEEEeeEEcccc
Confidence 987766666789999999999999999999999999999988653 235666777764 469999999999988855
No 9
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.84 E-value=7.8e-21 Score=143.76 Aligned_cols=149 Identities=15% Similarity=-0.003 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD 86 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~ 86 (165)
...+-.+..|. ..|+++++|| ||||.+|..++... ++|||+|.++++++..+ ++++|.+|++++.||+.+.+++
T Consensus 21 EIRal~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 21 EIRALTLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHHHHHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC
Confidence 44555666675 4899999999 99999999999544 79999999999999985 7889999999999999987776
Q ss_pred CCCccEEEEcCCCC--CchHHHHhccccCcEEEEEecCC-CceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC--C
Q psy8015 87 NGPYDAIHVGAAYP--RYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS--M 161 (165)
Q Consensus 87 ~~~fD~I~i~~~~~--~~p~~l~~~LkpgG~lvi~~~~~-~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~--~ 161 (165)
..+||+||++++.. .+.+.+++.||||||+|+...+- +...+....+..++. +...+.-.+-.++..+. .|+ |
T Consensus 100 ~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~~lg~~~-~~~~~n 177 (187)
T COG2242 100 LPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGKPLGGGT-MFRPVN 177 (187)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecceeccCee-EeecCC
Confidence 56899999999843 46678999999999999998763 223333333433332 77777777888888886 777 8
Q ss_pred CC
Q psy8015 162 PI 163 (165)
Q Consensus 162 ~~ 163 (165)
||
T Consensus 178 Pv 179 (187)
T COG2242 178 PV 179 (187)
T ss_pred CE
Confidence 87
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.80 E-value=4.5e-19 Score=139.85 Aligned_cols=112 Identities=12% Similarity=0.082 Sum_probs=93.5
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF 84 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~ 84 (165)
+...+.+.+-.+..+.+|.+|||| ||||-+|..+++.+ ++|+++|+|+.|++.|+ ....+..+++|++|||.+..
T Consensus 35 ~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP 114 (238)
T COG2226 35 LHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP 114 (238)
T ss_pred chHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC
Confidence 444454444444345689999999 99999999999998 79999999999999996 66667778999999998866
Q ss_pred CCCCCccEEEEcCCCCCchH------HHHhccccCcEEEEEec
Q psy8015 85 GDNGPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 85 ~~~~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~ 121 (165)
.++++||++.++.+.+++++ ++.|.|||||++++..-
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 67899999999999887663 78999999999988654
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.75 E-value=2.1e-18 Score=136.08 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN 87 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~ 87 (165)
..++++.+. ..++.+|||+ ||||.++..+++.. ++|+++|+|++|++.|+ .+..+..||+++++|+.+...++
T Consensus 36 r~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 36 RRKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp -SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 344555553 4789999999 99999999999865 58999999999999996 55566779999999998754556
Q ss_pred CCccEEEEcCCCCCchH------HHHhccccCcEEEEEe
Q psy8015 88 GPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPI 120 (165)
Q Consensus 88 ~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~ 120 (165)
++||+|++..+.+++++ ++.+.|||||++++..
T Consensus 115 ~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 89999999998887764 6899999999999864
No 12
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.70 E-value=6.1e-17 Score=126.17 Aligned_cols=110 Identities=16% Similarity=0.154 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEE-ccCC
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLI-ADGR 81 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~-gD~~ 81 (165)
+....++++.+|....+.+++||| |+.||+|.+||... ++++++|+++++++.|+ +++.|.++ |+++. +|+.
T Consensus 43 ~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 43 IDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred CChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 446778888888877889999999 99999999999876 58999999999999997 88889877 89999 5886
Q ss_pred CCCCC--CCCccEEEEcCCCCCchH---HHHhccccCcEEEEE
Q psy8015 82 ASFGD--NGPYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIP 119 (165)
Q Consensus 82 ~~~~~--~~~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~ 119 (165)
+.+.. .++||.||+++...++|+ .+.++|+|||.+|+-
T Consensus 123 ~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 64442 589999999999998885 568999999999983
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.69 E-value=1.6e-16 Score=110.64 Aligned_cols=95 Identities=18% Similarity=0.098 Sum_probs=76.1
Q ss_pred CCCeEEEE-ccccHHHHHHhc--cCCcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCCCCCccEEEEcC-C
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPT--FIPNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGDNGPYDAIHVGA-A 98 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~--~~~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~~~~fD~I~i~~-~ 98 (165)
|+.+|||+ ||+|.++..+++ ...+|+++|+|++|++.|+ .++.+ .+|++++++|+...+...++||+|++.+ .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 68999999 999999999999 5679999999999999997 32233 4689999999922334456799999999 4
Q ss_pred CCCc---------hHHHHhccccCcEEEEEe
Q psy8015 99 YPRY---------PEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 99 ~~~~---------p~~l~~~LkpgG~lvi~~ 120 (165)
.+.+ .+.+.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4322 245789999999999853
No 14
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.67 E-value=4e-16 Score=118.76 Aligned_cols=150 Identities=14% Similarity=0.055 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF 84 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~ 84 (165)
.+...+.+++++. ..++.+|||+ ||+|+++..+++.. .+|+++|+++++++.|+ .+..+..+++++.+|+...+
T Consensus 16 ~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~ 94 (187)
T PRK08287 16 KEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL 94 (187)
T ss_pred hHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc
Confidence 4444555667774 4788999999 99999999998865 58999999999999995 45566778999999975433
Q ss_pred CCCCCccEEEEcCCCCCch---HHHHhccccCcEEEEEecC-CCceEEE-EEEEccCCcEEEEEeeeEEEeeeccCCCCC
Q psy8015 85 GDNGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIPIGD-TKQQMLT-IYDKFHNGTIDIQHWGVVQVGLLYDVKAGY 159 (165)
Q Consensus 85 ~~~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~~~~-~~~~~~~-~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~ 159 (165)
.++||+|++++....++ +.+.+.|+|||++++.... .+...+. .+.+.+-............+.++.++- .|
T Consensus 95 --~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 171 (187)
T PRK08287 95 --PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQVSSLTPLGAGH-YF 171 (187)
T ss_pred --CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEEEeeeEcCcce-ee
Confidence 35799999987655443 4678999999999886532 2222222 222322222344444455566666654 55
Q ss_pred C--CCC
Q psy8015 160 S--MPI 163 (165)
Q Consensus 160 ~--~~~ 163 (165)
. |||
T Consensus 172 ~~~~~~ 177 (187)
T PRK08287 172 KPNNPT 177 (187)
T ss_pred ccCCCE
Confidence 5 675
No 15
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.67 E-value=1.1e-15 Score=122.37 Aligned_cols=108 Identities=16% Similarity=0.047 Sum_probs=84.6
Q ss_pred HHHHH-HHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccc-----cCCCCCeEEEEccCCC
Q psy8015 13 AVAKY-VTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSS-----TIDPDHDYDLIADGRA 82 (165)
Q Consensus 13 ~~~~~-l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~-----~~~~~nV~~~~gD~~~ 82 (165)
.+.++ ++++ ...++.+|||+ ||+|.++..+++.. ++|+++|+|++|++.|+.+ ....+|++++++|+.+
T Consensus 60 ~~r~~~~~~~-~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 60 IWKRMAVSWS-GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHHHHHHHHh-CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 34433 3444 44789999999 99999999998764 4899999999999999621 1234689999999876
Q ss_pred CCCCCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015 83 SFGDNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 83 ~~~~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~ 121 (165)
...++++||+|++..+.++++ .++.+.|||||++++..-
T Consensus 139 lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 139 LPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 434457899999998888765 368899999999988754
No 16
>PLN02476 O-methyltransferase
Probab=99.66 E-value=2e-16 Score=127.42 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=94.3
Q ss_pred CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCC
Q psy8015 9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGR 81 (165)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~ 81 (165)
.++..+++++..|....+.++|||| |++||.|.++|... ++|+++|.+++.++.|+ +++.|+. +|+++.||+.
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 4567788888888887889999999 99999999999864 58999999999999996 7888886 6999999997
Q ss_pred CCCCC------CCCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015 82 ASFGD------NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 82 ~~~~~------~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~ 119 (165)
+.++. .++||.||+++....++ +.+.+.|+|||.+++.
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 64432 25899999999987666 4678999999998874
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.66 E-value=5e-16 Score=118.85 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=85.1
Q ss_pred CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
.++.+|||+ ||+|+.+..+++. ..+|+++|.+++|++.|+ .+..+.+|++++++|+.+... .++||+|++++..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~~ 122 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAVA 122 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcccc
Confidence 458999999 9999999999864 368999999999999996 566778789999999876433 5789999997642
Q ss_pred --CCchHHHHhccccCcEEEEEecCCCceEEEEEEE
Q psy8015 100 --PRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDK 133 (165)
Q Consensus 100 --~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k 133 (165)
+.+.+.+.+.|||||++++..+....+.+....+
T Consensus 123 ~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~ 158 (187)
T PRK00107 123 SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPK 158 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHH
Confidence 2444578899999999999987643334333333
No 18
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.66 E-value=2.8e-16 Score=124.08 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=91.1
Q ss_pred CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCC
Q psy8015 9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGR 81 (165)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~ 81 (165)
.++...++++..+....+.++|||+ ||+||.+.+++... ++|+++|+++++++.|+ +++.|+. +++++.||+.
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 3456778888888777789999999 99999999998764 69999999999999996 6777775 5999999997
Q ss_pred CCCCC------CCCccEEEEcCCCCCch---HHHHhccccCcEEEE
Q psy8015 82 ASFGD------NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVI 118 (165)
Q Consensus 82 ~~~~~------~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi 118 (165)
+.++. .++||.||+++..+.++ +.+.+.|+|||.+++
T Consensus 131 ~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 131 SALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 64331 36899999998876554 567899999999886
No 19
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.65 E-value=6.2e-17 Score=125.48 Aligned_cols=111 Identities=15% Similarity=0.139 Sum_probs=91.9
Q ss_pred CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCC
Q psy8015 9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGR 81 (165)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~ 81 (165)
.++...++++..|....+.++|||| |++||.|.++|+.. ++|+++|.+++.++.|+ +++.|+. +|+++.||+.
T Consensus 28 ~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp SHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred ccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 4677888999988766788999999 99999999999864 69999999999999997 7777875 6999999986
Q ss_pred CCCCC------CCCccEEEEcCCCCCchH---HHHhccccCcEEEEE
Q psy8015 82 ASFGD------NGPYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIP 119 (165)
Q Consensus 82 ~~~~~------~~~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~ 119 (165)
+.++. .++||.||+++...++++ .+.+.|+|||.+++.
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 53221 258999999999987764 567999999999985
No 20
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.65 E-value=8.7e-16 Score=115.55 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=94.8
Q ss_pred EEecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCc--EEEEeCCHHHHHhcc--cccCCCCCeEEEEc
Q psy8015 4 VFVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPN--SFNINVYYYLSGGPL--SSTIDPDHDYDLIA 78 (165)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~--V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g 78 (165)
|||.+++.....-|++.+.. .++.+|||+ ||+|.++..+++.... |+++|+++++++.|+ ++..+.++++++..
T Consensus 10 vFs~~~~d~~t~lL~~~l~~-~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~ 88 (170)
T PF05175_consen 10 VFSPPRLDAGTRLLLDNLPK-HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQS 88 (170)
T ss_dssp STTTTSHHHHHHHHHHHHHH-HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEES
T ss_pred eeCCCCCCHHHHHHHHHHhh-ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccc
Confidence 57667777778888888875 488999999 9999999999998754 999999999999996 66677777999999
Q ss_pred cCCCCCCCCCCccEEEEcCCCCCc-----------hHHHHhccccCcEEEEEecCC
Q psy8015 79 DGRASFGDNGPYDAIHVGAAYPRY-----------PEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 79 D~~~~~~~~~~fD~I~i~~~~~~~-----------p~~l~~~LkpgG~lvi~~~~~ 123 (165)
|..+..+ ..+||.|+++...+.- .+...+.|||||++++.....
T Consensus 89 d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 89 DLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp STTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred ccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 9987665 5799999998765421 234679999999998877654
No 21
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.64 E-value=3e-16 Score=120.62 Aligned_cols=145 Identities=11% Similarity=0.014 Sum_probs=100.4
Q ss_pred HHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCC-CCC
Q psy8015 18 VTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGD-NGP 89 (165)
Q Consensus 18 l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~-~~~ 89 (165)
+..+ ...++++|||+ ||+|+++..+++.. ++|+++|+++++++.|+ .+..+ .+|++++.+|+.+.++. .+.
T Consensus 33 l~~l-~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 33 LSKL-RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHc-CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3444 34789999999 99999999988753 58999999999999995 55667 46899999998654333 368
Q ss_pred ccEEEEcCCCCC---chHHHHhccccCcEEEEEecCCC-ceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC--CCC
Q psy8015 90 YDAIHVGAAYPR---YPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS--MPI 163 (165)
Q Consensus 90 fD~I~i~~~~~~---~p~~l~~~LkpgG~lvi~~~~~~-~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~--~~~ 163 (165)
||+|++++.... +.+.+.+.|+|||++++...+.. ...+....+..+-......+...+-.++.+.. .|. |||
T Consensus 112 ~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~npv 190 (198)
T PRK00377 112 FDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEITEVIIAKGMKTKVGT-AMMTRNPI 190 (198)
T ss_pred CCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEEEEehhhcccccCCc-EeecCCCE
Confidence 999999765444 34567889999999998544322 23333333322223455555555555666554 666 887
Q ss_pred C
Q psy8015 164 I 164 (165)
Q Consensus 164 ~ 164 (165)
.
T Consensus 191 ~ 191 (198)
T PRK00377 191 F 191 (198)
T ss_pred E
Confidence 4
No 22
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.64 E-value=4.7e-16 Score=119.26 Aligned_cols=146 Identities=10% Similarity=0.050 Sum_probs=100.1
Q ss_pred HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCC
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGP 89 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~ 89 (165)
.++..+ ...++++|||+ ||+|+++..+++.. ++|+++|+|+++++.|+ +++.+.+|++++.+|+.+.++. ...
T Consensus 31 ~l~~~l-~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 31 LLISQL-RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 456666 44789999999 99999999998764 68999999999999996 5667778899999998653322 235
Q ss_pred ccEEEEcCCCC--CchHHHHhccccCcEEEEEecCCCc-eEE-EEEEEccCCcEEEEEeeeEEEeeeccCCCCCC--CCC
Q psy8015 90 YDAIHVGAAYP--RYPEIFIHHLKSGGRLVIPIGDTKQ-QML-TIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS--MPI 163 (165)
Q Consensus 90 fD~I~i~~~~~--~~p~~l~~~LkpgG~lvi~~~~~~~-~~~-~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~--~~~ 163 (165)
+|.+++++... .+.+.+.+.|+|||++++....... ..+ ..+.+.....++..........++.+.+ +|+ |||
T Consensus 110 ~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pv 188 (196)
T PRK07402 110 PDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRLETRGFSQ-VFAAVDPI 188 (196)
T ss_pred CCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhcccccCcC-eeecCCCE
Confidence 78888875432 4456788999999999998754321 111 1111211223555444444444566554 776 887
No 23
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.63 E-value=2.8e-15 Score=114.14 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=80.3
Q ss_pred CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
++++|||+ ||+|+++..++... .+|+++|.+++|++.++ .++.+.+|++++++|+.+. ...++||+|++++ .+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-QHEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-cccCCccEEEehh-hh
Confidence 58999999 99999999998765 57999999999999886 5666788899999998763 4457899999976 55
Q ss_pred Cch---HHHHhccccCcEEEEEecCCC
Q psy8015 101 RYP---EIFIHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 101 ~~p---~~l~~~LkpgG~lvi~~~~~~ 124 (165)
+++ +.+.+.|+|||++++..+...
T Consensus 120 ~~~~~~~~~~~~LkpgG~lvi~~~~~~ 146 (181)
T TIGR00138 120 SLNVLLELTLNLLKVGGYFLAYKGKKY 146 (181)
T ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCCc
Confidence 444 467889999999999887544
No 24
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.62 E-value=5.5e-15 Score=115.55 Aligned_cols=109 Identities=10% Similarity=0.072 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG 85 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~ 85 (165)
.....++..+. .+++++|||+ ||+|..+..+++.. ++|+++|+++++++.|+ .+..+.++++++.+|+.....
T Consensus 32 ~~~~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 32 KWRKDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF 110 (231)
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC
Confidence 33456677764 4789999999 99999999998764 58999999999999996 455567789999999876433
Q ss_pred CCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015 86 DNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 86 ~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~ 121 (165)
+.++||+|+++...++.+ +++.+.|+|||++++...
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 111 DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 457899999987776654 357899999999998654
No 25
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.61 E-value=1.1e-15 Score=121.56 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA 82 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~ 82 (165)
++...++++..|....+.++|||| |++||.|.++|+.. ++|+++|.+++.++.|+ +++.|+ ++|+++.||+.+
T Consensus 63 ~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 63 TSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 456778888888776788999999 99999999999864 68999999999999997 777886 469999999876
Q ss_pred CCCC-------CCCccEEEEcCCCCCchH---HHHhccccCcEEEEE
Q psy8015 83 SFGD-------NGPYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIP 119 (165)
Q Consensus 83 ~~~~-------~~~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~ 119 (165)
.++. .++||.||+++....+++ .+.+.|+|||.+++.
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 4432 268999999999887774 568999999998873
No 26
>PLN02244 tocopherol O-methyltransferase
Probab=99.61 E-value=5.7e-15 Score=122.43 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcC-----CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC
Q psy8015 13 AVAKYVTYLSGH-----SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA 82 (165)
Q Consensus 13 ~~~~~l~~l~~~-----~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~ 82 (165)
...++++++. + .++++|||| ||+|.++..+++. ..+|+++|+++.|++.|+ .+..+. ++++++++|+.+
T Consensus 101 ~~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 101 MIEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 3445555552 2 568999999 9999999999986 469999999999999986 344455 479999999876
Q ss_pred CCCCCCCccEEEEcCCCCCchH------HHHhccccCcEEEEEe
Q psy8015 83 SFGDNGPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPI 120 (165)
Q Consensus 83 ~~~~~~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~ 120 (165)
...++++||+|++..+.+++++ ++.+.|||||++++..
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 4334579999999888877663 6789999999999864
No 27
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=4.9e-16 Score=122.51 Aligned_cols=134 Identities=16% Similarity=0.078 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCC
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGD 86 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~ 86 (165)
.+.++..+ .+.||++|+|. +|||.+|+.||+.+ ++|+++|+.++.++.|+ ++.+++.| |++..+|..+...+
T Consensus 83 ~~~I~~~~-gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARL-GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHc-CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 34455555 56999999999 99999999999864 69999999999999995 77788877 99999999886655
Q ss_pred CCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEe
Q psy8015 87 NGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVG 150 (165)
Q Consensus 87 ~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~ 150 (165)
+ .||+||++-..| ++.+.+.+.|+|||.+++.++..+ |.-..+.+..+..|...+.+|+...
T Consensus 162 ~-~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ve-Qv~kt~~~l~~~g~~~ie~~E~l~R 224 (256)
T COG2519 162 E-DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVE-QVEKTVEALRERGFVDIEAVETLVR 224 (256)
T ss_pred c-ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHH-HHHHHHHHHHhcCccchhhheeeeh
Confidence 4 899999986654 677889999999999999987654 2222222211223555555555443
No 28
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=1.1e-14 Score=102.47 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG- 85 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~- 85 (165)
...+.+++.+. ..++++|||+ ||+|+++..+++.. .+|+++|+++.+++.|+ .+..+.++++++.+|+...++
T Consensus 6 ~~~~~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 6 EVRALTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence 34556777764 4678899999 99999999999875 58999999999999996 556677789999999764332
Q ss_pred CCCCccEEEEcCCCCC---chHHHHhccccCcEEEEEe
Q psy8015 86 DNGPYDAIHVGAAYPR---YPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 86 ~~~~fD~I~i~~~~~~---~p~~l~~~LkpgG~lvi~~ 120 (165)
...+||.|++...... +.+.+.+.|||||++++..
T Consensus 85 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 2358999999876654 4567899999999999865
No 29
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.60 E-value=4.3e-15 Score=127.06 Aligned_cols=139 Identities=10% Similarity=0.031 Sum_probs=107.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC----
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG---- 85 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~---- 85 (165)
....+++++. ..++.+|||+ ||+|.++..+|+.+.+|+++|+|++|++.|+ ++..+.+|++++.+|+.+.+.
T Consensus 285 l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~ 363 (443)
T PRK13168 285 MVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW 363 (443)
T ss_pred HHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh
Confidence 3445556653 3678999999 9999999999998899999999999999996 555677899999999865432
Q ss_pred CCCCccEEEEcCCCCCchH--HHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015 86 DNGPYDAIHVGAAYPRYPE--IFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV 155 (165)
Q Consensus 86 ~~~~fD~I~i~~~~~~~p~--~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~ 155 (165)
..++||+|+++......++ +....++|++.+++.|++.+. ..+..+.+ ++|....+..+++.|.+.+
T Consensus 364 ~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tlaRDl~~L~~---~gY~l~~i~~~DmFP~T~H 433 (443)
T PRK13168 364 ALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVE---AGYRLKRAGMLDMFPHTGH 433 (443)
T ss_pred hcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEEeChHHhhccHHHHhh---CCcEEEEEEEeccCCCCCc
Confidence 1357999999877654443 234557999999999987664 44444433 3599999999999998864
No 30
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.59 E-value=5.8e-15 Score=117.50 Aligned_cols=105 Identities=10% Similarity=0.045 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD 86 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~ 86 (165)
+.+....+++.+. ..++.+|||+ ||+|.++..+++. ..+|+++|+|+.|++.|+.+ +++++.+|+.+. +.
T Consensus 14 ~~~~~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~-~~ 86 (255)
T PRK14103 14 RGRPFYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDW-KP 86 (255)
T ss_pred hhCHHHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhC-CC
Confidence 3445567777774 3688999999 9999999999987 46899999999999998632 588999998653 44
Q ss_pred CCCccEEEEcCCCCCchH------HHHhccccCcEEEEEec
Q psy8015 87 NGPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 87 ~~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~ 121 (165)
.++||+|+++...+++++ ++.+.|||||++++.+.
T Consensus 87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 87 KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 578999999999887764 57899999999998754
No 31
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.59 E-value=5.4e-15 Score=108.88 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCCCeEEEE-ccccHHHHHHhc-c--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC--CCccEEEEc
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPT-F--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN--GPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~-~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~--~~fD~I~i~ 96 (165)
+++.+|||+ ||+|.++..+++ + ..+++++|+|++|++.|+ +++.+.+|++++++|..+ ++.. ..||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 468999999 999999999994 4 368999999999999997 567888899999999987 5422 789999999
Q ss_pred CCCCCch------HHHHhccccCcEEEEEecC
Q psy8015 97 AAYPRYP------EIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 97 ~~~~~~p------~~l~~~LkpgG~lvi~~~~ 122 (165)
...++++ +.+.+.|++||++++....
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 8876554 3578999999999986643
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=2e-14 Score=110.59 Aligned_cols=104 Identities=15% Similarity=0.008 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPY 90 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~f 90 (165)
...+++.+.. .++.+|||+ ||+|..+..|++...+|+++|+|++|++.|+ .+..+..|+++..+|..+. +..++|
T Consensus 19 ~~~l~~~l~~-~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~f 96 (197)
T PRK11207 19 HSEVLEAVKV-VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-TFDGEY 96 (197)
T ss_pred hHHHHHhccc-CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-CcCCCc
Confidence 3456666643 577999999 9999999999998889999999999999996 4555677899999998653 223579
Q ss_pred cEEEEcCCCCCch--------HHHHhccccCcEEEEE
Q psy8015 91 DAIHVGAAYPRYP--------EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 91 D~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~ 119 (165)
|+|++....++++ ..+.+.|+|||++++.
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999988776543 2578999999996553
No 33
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.58 E-value=2e-15 Score=119.91 Aligned_cols=142 Identities=13% Similarity=-0.018 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCC-C
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRA-S 83 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~-~ 83 (165)
--.+.++.++ .+.||++|+|. ||||.+|..|++.+ |+|++.|++++.++.|+ ++.+|+. ||++.+.|..+ +
T Consensus 27 kD~~~I~~~l-~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 27 KDISYILMRL-DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHHHT-T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred chHHHHHHHc-CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 3456677777 46999999999 99999999999875 69999999999999996 7888885 79999999854 5
Q ss_pred CCC--CCCccEEEEcCCCC-CchHHHHhcc-ccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccCC
Q psy8015 84 FGD--NGPYDAIHVGAAYP-RYPEIFIHHL-KSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDVK 156 (165)
Q Consensus 84 ~~~--~~~fD~I~i~~~~~-~~p~~l~~~L-kpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~ 156 (165)
+.+ ...||+||++-..| +..+.+.+.| ||||++++..+..+. +......+. .+|...+..|+....+.-.+
T Consensus 106 ~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~--~gf~~i~~~Evl~R~~~v~~ 181 (247)
T PF08704_consen 106 FDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALRE--HGFTDIETVEVLLREWEVRP 181 (247)
T ss_dssp -STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHH--TTEEEEEEEEEEEEEEEEET
T ss_pred ccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHH--CCCeeeEEEEEEeeEEEEEe
Confidence 532 36799999997765 4667788999 999999998876542 333222232 24777777777666555443
No 34
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=1.4e-14 Score=115.38 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCC-CCCCC
Q psy8015 15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASF-GDNGP 89 (165)
Q Consensus 15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~-~~~~~ 89 (165)
..+++.+. .++.+|||+ ||+|+++..+++...+|+++|++++|++.|+ .+..+. +|++++++|+.+.. ...++
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~ 112 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP 112 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence 34555553 457899999 9999999999999889999999999999996 455565 47999999986532 12468
Q ss_pred ccEEEEcCCCCCch------HHHHhccccCcEEEEEecC
Q psy8015 90 YDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 90 fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~~ 122 (165)
||+|++....++++ +.+.+.|||||++++....
T Consensus 113 fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 113 VDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 99999998876553 3678999999999886543
No 35
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.56 E-value=3.1e-14 Score=114.14 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=86.2
Q ss_pred ecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC
Q psy8015 6 VSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS 83 (165)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~ 83 (165)
++++... ...++..+. +.++.+|||| ||+|..+..+++.. .+|+++|++++|++.|+.+....++++++.+|+...
T Consensus 34 ~~gg~~~-~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 34 SSGGIEA-TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK 111 (263)
T ss_pred CCCchHH-HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC
Confidence 3444444 567777774 5789999999 99999999888654 599999999999999973222245799999998753
Q ss_pred CCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEec
Q psy8015 84 FGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 84 ~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~ 121 (165)
..+.++||+|++.....+++ .++.+.|||||++++...
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 33357899999976554443 357899999999998643
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=1.3e-14 Score=97.13 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=70.1
Q ss_pred EEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCch-----
Q psy8015 31 LAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYP----- 103 (165)
Q Consensus 31 Lei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p----- 103 (165)
||+ ||+|..+..+++. ..+|+++|.++++++.++... ...++.++.+|..+...++++||+|++....++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRL-KNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHT-TTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcc-cccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 899 9999999999999 789999999999999997322 23457799999877554578999999999888764
Q ss_pred -HHHHhccccCcEEEE
Q psy8015 104 -EIFIHHLKSGGRLVI 118 (165)
Q Consensus 104 -~~l~~~LkpgG~lvi 118 (165)
+++.+.|||||++++
T Consensus 80 l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHEEEEEEEEE
T ss_pred HHHHHHHcCcCeEEeC
Confidence 368999999999986
No 37
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.55 E-value=4.2e-14 Score=116.08 Aligned_cols=134 Identities=7% Similarity=-0.119 Sum_probs=103.3
Q ss_pred HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-CCCCcc
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG-DNGPYD 91 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~-~~~~fD 91 (165)
...+++.. .++.+|||+ ||+|.++..+|+...+|+++|+++++++.|+ .+..+++|++++.+|+.+... ..+.||
T Consensus 164 ~v~~~l~~-~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D 242 (315)
T PRK03522 164 TARDWVRE-LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPD 242 (315)
T ss_pred HHHHHHHh-cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCe
Confidence 33445532 357999999 9999999999998889999999999999996 566678889999999865322 235799
Q ss_pred EEEEcCCCCCchH---HHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015 92 AIHVGAAYPRYPE---IFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV 155 (165)
Q Consensus 92 ~I~i~~~~~~~p~---~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~ 155 (165)
+|+++....-+.+ .+...++|++.+++.|++.+. ..+..+ ++|....+..+++.|++.+
T Consensus 243 ~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-----~~y~~~~~~~~DmFP~T~H 305 (315)
T PRK03522 243 LVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-----PGYRIERVQLFDMFPHTAH 305 (315)
T ss_pred EEEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-----cCcEEEEEEEeccCCCCCe
Confidence 9999966544433 345567888999999988764 344433 2599999999999998864
No 38
>PRK04266 fibrillarin; Provisional
Probab=99.55 E-value=5.2e-14 Score=110.67 Aligned_cols=111 Identities=18% Similarity=0.120 Sum_probs=81.2
Q ss_pred chHHHHHHHHHH--hcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC
Q psy8015 10 VSGAVAKYVTYL--SGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF 84 (165)
Q Consensus 10 ~~~~~~~~l~~l--~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~ 84 (165)
.+...+.++..+ ..+.++++|||+ ||+|+++..+++.+ ++|+++|++++|++.++.+.....||.++.+|+.+..
T Consensus 54 r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~ 133 (226)
T PRK04266 54 RSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPE 133 (226)
T ss_pred ccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcc
Confidence 344455555522 245799999999 99999999999986 5899999999999866411112368999999986421
Q ss_pred ---CCCCCccEEEEcCCCCCc----hHHHHhccccCcEEEEEe
Q psy8015 85 ---GDNGPYDAIHVGAAYPRY----PEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 85 ---~~~~~fD~I~i~~~~~~~----p~~l~~~LkpgG~lvi~~ 120 (165)
+-..+||+|+++...++. .+.+.+.|||||++++.+
T Consensus 134 ~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 134 RYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred hhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 112569999987654432 356788999999999953
No 39
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.54 E-value=1.9e-14 Score=110.05 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=76.3
Q ss_pred cCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015 23 GHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR 101 (165)
Q Consensus 23 ~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~ 101 (165)
+..+-.++||+ ||.|.+|..||..+.+++++|+++..++.||.+..+.+||+++++|..+.+| .++||.|++......
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P-~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWP-EGRFDLIVLSEVLYY 118 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred CccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCC-CCCeeEEEEehHhHc
Confidence 33667899999 9999999999999999999999999999998555577899999999987665 479999999977665
Q ss_pred ch---------HHHHhccccCcEEEEEec
Q psy8015 102 YP---------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 102 ~p---------~~l~~~LkpgG~lvi~~~ 121 (165)
+. +.+.+.|+|||.||+-..
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 42 246789999999999753
No 40
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.53 E-value=2.7e-14 Score=117.54 Aligned_cols=97 Identities=8% Similarity=-0.036 Sum_probs=79.5
Q ss_pred CCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhccc--ccCC-CCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLS--STID-PDHDYDLIADGRASFGDNGPYDAIHVGAAYPR 101 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~--~~~~-~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~ 101 (165)
++.+|||| ||+|+++..|++...+|+++|.+++|++.|+. +..+ ..+++++++|+.+.....++||+|++....++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 57799999 99999999999888899999999999999972 2222 24799999998653334578999999988887
Q ss_pred chH------HHHhccccCcEEEEEecC
Q psy8015 102 YPE------IFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 102 ~p~------~l~~~LkpgG~lvi~~~~ 122 (165)
+++ ++.+.|||||++++....
T Consensus 211 v~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 211 VANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 653 678999999999987643
No 41
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.52 E-value=9.9e-14 Score=114.45 Aligned_cols=118 Identities=16% Similarity=0.113 Sum_probs=89.4
Q ss_pred ecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC
Q psy8015 6 VSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA 82 (165)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~ 82 (165)
+.++.....++.+-.+...+++++|||+ ||||.++..++....+|+++|+|++|++.|+ ++..|.+++++..+|+.+
T Consensus 162 ~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~ 241 (329)
T TIGR01177 162 KPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK 241 (329)
T ss_pred CCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc
Confidence 3444444444443333345789999999 9999999988888889999999999999886 677788889999999876
Q ss_pred CCCCCCCccEEEEcCCCC---------------CchHHHHhccccCcEEEEEecCC
Q psy8015 83 SFGDNGPYDAIHVGAAYP---------------RYPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 83 ~~~~~~~fD~I~i~~~~~---------------~~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
.....+.||+|+++..+. .+.+.+.+.|||||++++...+.
T Consensus 242 l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 242 LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 433357899999985431 11235678999999999988654
No 42
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=1.3e-13 Score=109.67 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCC
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGP 89 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~ 89 (165)
....++..+. ..++.+|||| ||+|.++..+++.. .+|+++|++++|++.|+.+ .+|++++.+|+... ....+
T Consensus 19 ~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~---~~~~~~~~~d~~~~-~~~~~ 93 (258)
T PRK01683 19 PARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR---LPDCQFVEADIASW-QPPQA 93 (258)
T ss_pred HHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh---CCCCeEEECchhcc-CCCCC
Confidence 4556666664 3678999999 99999999999864 6899999999999999632 35789999998653 33468
Q ss_pred ccEEEEcCCCCCchH------HHHhccccCcEEEEEec
Q psy8015 90 YDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 90 fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~ 121 (165)
||+|+++...+++++ .+.+.|||||++++.+.
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 999999998876653 57899999999998653
No 43
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.51 E-value=1.2e-13 Score=110.88 Aligned_cols=105 Identities=14% Similarity=0.039 Sum_probs=81.8
Q ss_pred HHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015 17 YVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPY 90 (165)
Q Consensus 17 ~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~f 90 (165)
+...+...+++++|||+ ||+|..|..++... ++|+++|+++++++.++ +++.|..||+++++|+.......+.|
T Consensus 62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCC
Confidence 33333345789999999 99999999998875 58999999999999985 77788889999999986533334579
Q ss_pred cEEEEcCCCCC----------------------------chHHHHhccccCcEEEEEec
Q psy8015 91 DAIHVGAAYPR----------------------------YPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 91 D~I~i~~~~~~----------------------------~p~~l~~~LkpgG~lvi~~~ 121 (165)
|+|+++..+.. +.+...+.|||||+|+....
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99999865431 11245688999999998754
No 44
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.51 E-value=1.7e-14 Score=113.02 Aligned_cols=95 Identities=14% Similarity=0.037 Sum_probs=79.8
Q ss_pred CCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhccc--ccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCc
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLS--STIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRY 102 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~--~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~ 102 (165)
++.+|||| ||-|.++..||+...+|+++|.++++++.|+. .+-++ ++++......+.....++||+|++.-..+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 78999999 99999999999999999999999999999983 22233 4678777776544444799999999999988
Q ss_pred hH------HHHhccccCcEEEEEec
Q psy8015 103 PE------IFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 103 p~------~l~~~LkpgG~lvi~~~ 121 (165)
|+ .|.+++||||.+++...
T Consensus 138 ~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 138 PDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEecc
Confidence 75 48899999999999743
No 45
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=1.7e-13 Score=108.53 Aligned_cols=104 Identities=11% Similarity=-0.016 Sum_probs=81.0
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA 92 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~ 92 (165)
..++++.+.. .++.+|||+ ||+|.++..+++...+|+++|+|++|++.|+.+. .+..++.+|+.......++||+
T Consensus 31 a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~---~~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 31 ADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKD---AADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC---CCCCEEEcCcccCcCCCCcEEE
Confidence 3455666643 467899999 9999999999888889999999999999996331 2357889998664334568999
Q ss_pred EEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015 93 IHVGAAYPRYP------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 93 I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~ 121 (165)
|+++...+..+ .++.+.|+|||++++...
T Consensus 107 V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 107 AWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred EEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99987765443 467899999999998753
No 46
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.50 E-value=2.2e-13 Score=104.64 Aligned_cols=104 Identities=14% Similarity=-0.022 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPY 90 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~f 90 (165)
...+++.+.. .++.+|||+ ||+|+.+..+++...+|+++|+|+.|++.++ .+..++ ++++..+|... ++..++|
T Consensus 19 ~~~l~~~~~~-~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~-~~~~~~f 95 (195)
T TIGR00477 19 HSAVREAVKT-VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINA-AALNEDY 95 (195)
T ss_pred hHHHHHHhcc-CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchh-ccccCCC
Confidence 3455566643 467899999 9999999999998889999999999999985 333455 47788888653 2223579
Q ss_pred cEEEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015 91 DAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 91 D~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~ 120 (165)
|+|++....++++ +.+.+.|+|||++++..
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 9999987776543 35788999999966653
No 47
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.50 E-value=2.7e-13 Score=102.46 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=76.1
Q ss_pred CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR 101 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~ 101 (165)
.++++|||+ ||+|+++..+++...+|+++|+++++++.|+ ++..+. +++++.+|..+.. .++||.|+++.....
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc--CCcccEEEECCCCCC
Confidence 567899999 9999999999988779999999999999996 444444 6899999986643 358999999865431
Q ss_pred c---------------------------hHHHHhccccCcEEEEEecCC
Q psy8015 102 Y---------------------------PEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 102 ~---------------------------p~~l~~~LkpgG~lvi~~~~~ 123 (165)
. .+.+.+.|+|||++++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 1 234568999999999976543
No 48
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.49 E-value=4.1e-13 Score=107.96 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=76.3
Q ss_pred CCCCeEEEE-ccccHHHHHHhccCC-----cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFIP-----NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~~-----~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~ 98 (165)
.+..+|||+ ||+|+++..+++... +|+++|+|++|++.|+.+ ..|+++.++|+.+...++++||+|+...+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR---YPQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh---CCCCeEEEeecccCCCcCCceeEEEEecC
Confidence 456889999 999999999987542 689999999999998632 35789999998764334578999998665
Q ss_pred CCCchHHHHhccccCcEEEEEecCC
Q psy8015 99 YPRYPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 99 ~~~~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
+...+++.+.|||||++++.....
T Consensus 161 -~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 -PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred -CCCHHHHHhhccCCCEEEEEeCCC
Confidence 445678999999999999986543
No 49
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.49 E-value=3.7e-14 Score=120.81 Aligned_cols=137 Identities=9% Similarity=-0.089 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC----CC
Q psy8015 15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG----DN 87 (165)
Q Consensus 15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~----~~ 87 (165)
.++.+++. ..++++|||+ ||+|.++..+|+.+.+|+++|+++++++.|+ ++..+++|++++.+|+.+.++ ..
T Consensus 282 ~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 282 DRALEALE-LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcC
Confidence 34455553 3677999999 9999999999999899999999999999996 556678899999999865322 13
Q ss_pred CCccEEEEcCCCCCchHH---HHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015 88 GPYDAIHVGAAYPRYPEI---FIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV 155 (165)
Q Consensus 88 ~~fD~I~i~~~~~~~p~~---l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~ 155 (165)
..||+|+++.....+... ....++|++.+++.+++.+. ..+..+.+ .+|..+.+..+++.|.+.+
T Consensus 361 ~~~D~vi~dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~tlard~~~l~~---~gy~~~~~~~~DmFP~T~H 429 (431)
T TIGR00479 361 QIPDVLLLDPPRKGCAAEVLRTIIELKPERIVYVSCNPATLARDLEFLCK---EGYGITWVQPVDMFPHTAH 429 (431)
T ss_pred CCCCEEEECcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHH---CCeeEEEEEEeccCCCCCC
Confidence 479999998765432221 23458999988898876543 33333433 3499999999999998764
No 50
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.49 E-value=1.8e-13 Score=109.72 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=78.5
Q ss_pred CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcC
Q psy8015 24 HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGA 97 (165)
Q Consensus 24 ~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~ 97 (165)
+.++++|||+ ||+|..+..+++.. ++|+++|++++|++.|+ .+..+.+|++++.+|..+...+.+.||+|+.+.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4689999999 99999888777754 47999999999999996 455677899999999865333346899999987
Q ss_pred CCCCch------HHHHhccccCcEEEEE
Q psy8015 98 AYPRYP------EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 98 ~~~~~p------~~l~~~LkpgG~lvi~ 119 (165)
..+..+ +++.+.|||||++++.
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 765544 4678999999999985
No 51
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=2.1e-13 Score=116.38 Aligned_cols=106 Identities=20% Similarity=0.150 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC----
Q psy8015 15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF---- 84 (165)
Q Consensus 15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~---- 84 (165)
+.++..+....++++|||+ ||+|..|..+++.. ++|+++|+++++++.++ ++++|.+||+++.+|+....
T Consensus 241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc
Confidence 3334333345789999999 99999999999875 58999999999999995 77889989999999987543
Q ss_pred CCCCCccEEEEcCCCC------Cc----------------------hHHHHhccccCcEEEEEe
Q psy8015 85 GDNGPYDAIHVGAAYP------RY----------------------PEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 85 ~~~~~fD~I~i~~~~~------~~----------------------p~~l~~~LkpgG~lvi~~ 120 (165)
...+.||+|++++.+. +- .+...+.|||||+||...
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1236899999986432 11 124578999999998764
No 52
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.47 E-value=4.3e-13 Score=112.49 Aligned_cols=117 Identities=14% Similarity=0.038 Sum_probs=93.2
Q ss_pred EEecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCC---CCCeEE
Q psy8015 4 VFVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTID---PDHDYD 75 (165)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~---~~nV~~ 75 (165)
|||...++.-..-|++.+.. ..+.+|||+ ||+|.++..+++.. .+|+++|.|+.+++.|+ ++..+ ..++++
T Consensus 207 VFs~~~LD~GtrllL~~lp~-~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~ 285 (378)
T PRK15001 207 VFSRTGLDIGARFFMQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEF 285 (378)
T ss_pred ccCCCCcChHHHHHHHhCCc-ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEE
Confidence 78888888888889999864 456799999 99999999999875 58999999999999996 33333 347899
Q ss_pred EEccCCCCCCCCCCccEEEEcCCCCCc-----------hHHHHhccccCcEEEEEecC
Q psy8015 76 LIADGRASFGDNGPYDAIHVGAAYPRY-----------PEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 76 ~~gD~~~~~~~~~~fD~I~i~~~~~~~-----------p~~l~~~LkpgG~lvi~~~~ 122 (165)
+.+|+....+ ..+||+|+++..++.. .....+.|+|||++++..+.
T Consensus 286 ~~~D~l~~~~-~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 286 MINNALSGVE-PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred EEccccccCC-CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 9999876543 3589999998776521 12457899999999998653
No 53
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=3.7e-13 Score=115.77 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCC-CCeEEEEccCCCCCCCCCC
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDP-DHDYDLIADGRASFGDNGP 89 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~-~nV~~~~gD~~~~~~~~~~ 89 (165)
....+++.+. ..++.+|||| ||+|..+..+++.. .+|+++|+|+++++.|+.+..+. .+++++.+|..+...+.++
T Consensus 254 ~te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 254 TTKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 3566777775 4788999999 99999999888754 58999999999999996332233 3699999998764333568
Q ss_pred ccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015 90 YDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 90 fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~ 120 (165)
||+|++.....+++ .++.+.|||||++++..
T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 99999988887665 36789999999999864
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.46 E-value=1.2e-13 Score=106.60 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccC-CCCC-
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADG-RASF- 84 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~-~~~~- 84 (165)
.....+.+++. .++.+|||+ ||+|..+..+++.. .+|+++|+++++++.|+ ++..+.+|++++++|+ ....
T Consensus 28 ~~~~~~~~~~~--~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~ 105 (202)
T PRK00121 28 PAPLDWAELFG--NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLD 105 (202)
T ss_pred CCCCCHHHHcC--CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHH
Confidence 34445666664 368899999 99999999998865 47999999999999996 4555678899999998 3311
Q ss_pred -CCCCCccEEEEcCCCCC--------------chHHHHhccccCcEEEEEecCC
Q psy8015 85 -GDNGPYDAIHVGAAYPR--------------YPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 85 -~~~~~fD~I~i~~~~~~--------------~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
.+.++||.|++....+. +.+.+.+.|||||++++.....
T Consensus 106 ~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 106 MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 23468999999754321 2346789999999999976543
No 55
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.46 E-value=1.6e-13 Score=115.11 Aligned_cols=126 Identities=6% Similarity=-0.122 Sum_probs=99.4
Q ss_pred CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYP 100 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~ 100 (165)
.++.+|||+ ||+|.++..+|....+|+++|+++++++.|+ .+..+.+|++++.+|+.+.... ..+||.|+++....
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 356899999 9999999999988889999999999999996 5566778999999998653321 24699999997765
Q ss_pred CchHH---HHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015 101 RYPEI---FIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV 155 (165)
Q Consensus 101 ~~p~~---l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~ 155 (165)
...+. ....++|++.+++.+++.+. ..+..+ ++|..+.+..+++.|.+..
T Consensus 312 G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L-----~gy~l~~~~~~DmFPqT~H 365 (374)
T TIGR02085 312 GIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL-----SGYQIERVQLFDMFPHTSH 365 (374)
T ss_pred CCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh-----cCceEEEEEEeccCCCCCc
Confidence 43332 24568999999999987654 444444 2499999999999998764
No 56
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=3e-13 Score=115.45 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC-C
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF-G 85 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~-~ 85 (165)
..+.++..+....++++|||+ ||+|..|..++.+. ++|+++|+++++++.++ ++++|++|++++++|+.... .
T Consensus 224 ~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 224 ESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY 303 (431)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh
Confidence 334445444455889999999 99999999999875 68999999999999996 77788888999999986532 1
Q ss_pred CCCCccEEEEcCCCC------Cch----------------------HHHHhccccCcEEEEEec
Q psy8015 86 DNGPYDAIHVGAAYP------RYP----------------------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 86 ~~~~fD~I~i~~~~~------~~p----------------------~~l~~~LkpgG~lvi~~~ 121 (165)
..++||+|++++.+. .-| +...+.|||||+|+....
T Consensus 304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 246799999986652 112 235789999999998764
No 57
>PRK14967 putative methyltransferase; Provisional
Probab=99.45 E-value=9.4e-13 Score=102.94 Aligned_cols=110 Identities=11% Similarity=0.028 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC
Q psy8015 11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD 86 (165)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~ 86 (165)
+.....++..+. ..++++|||+ ||+|.++..+++.. .+|+++|+++++++.|+ ++..+. +++++.+|.....+
T Consensus 22 s~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~- 98 (223)
T PRK14967 22 TQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVE- 98 (223)
T ss_pred HHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhcc-
Confidence 334445554442 3678999999 99999999999865 48999999999999886 444444 68999999866433
Q ss_pred CCCccEEEEcCCCCC---------------------------chHHHHhccccCcEEEEEecCC
Q psy8015 87 NGPYDAIHVGAAYPR---------------------------YPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 87 ~~~fD~I~i~~~~~~---------------------------~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
.++||+|+++..... +.+...+.|||||++++...+.
T Consensus 99 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 99 FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 468999999853221 1134578999999999876553
No 58
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.45 E-value=1.7e-13 Score=96.00 Aligned_cols=95 Identities=16% Similarity=0.017 Sum_probs=75.5
Q ss_pred CCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCC--CCCCCccEEEEcCCC
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASF--GDNGPYDAIHVGAAY 99 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~--~~~~~fD~I~i~~~~ 99 (165)
|.+|||+ ||+|.++..+++.. .+++++|+|+..++.|+ ++..+. ++++++++|..+.. .+.++||+|+.+...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5799999 99999999999888 89999999999999996 555565 57999999986532 345899999998765
Q ss_pred CCc--------------hHHHHhccccCcEEEEEec
Q psy8015 100 PRY--------------PEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 100 ~~~--------------p~~l~~~LkpgG~lvi~~~ 121 (165)
... -+.+.+.|||||++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 421 1357899999999998764
No 59
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.45 E-value=8e-13 Score=102.10 Aligned_cols=113 Identities=8% Similarity=0.089 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHH-HhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTT-LPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG 85 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~-la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~ 85 (165)
.+.....++.++....++.+|||+ ||||+++.. +++...+|+++|.++++++.|+ ++.++.+|++++.+|+.+.++
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~ 116 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA 116 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh
Confidence 344555667777533568899999 999999985 6777789999999999999986 666777789999999876443
Q ss_pred C-CCCccEEEEcCCCC-CchHHH----Hh--ccccCcEEEEEecC
Q psy8015 86 D-NGPYDAIHVGAAYP-RYPEIF----IH--HLKSGGRLVIPIGD 122 (165)
Q Consensus 86 ~-~~~fD~I~i~~~~~-~~p~~l----~~--~LkpgG~lvi~~~~ 122 (165)
. ..+||+||++..+. .+.+.+ .+ +|+|++.+++.+..
T Consensus 117 ~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 117 QPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred hcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 2 34799999998843 333332 22 36889999988764
No 60
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=8.4e-13 Score=113.06 Aligned_cols=102 Identities=20% Similarity=0.129 Sum_probs=80.7
Q ss_pred HHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015 19 TYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDA 92 (165)
Q Consensus 19 ~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~ 92 (165)
.++ ...++++|||+ ||+|..|..+++.. ++|+++|+++++++.++ ++++|++||+++.+|+.... +.++||+
T Consensus 244 ~~l-~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~ 321 (445)
T PRK14904 244 LLL-NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDA 321 (445)
T ss_pred Hhc-CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCE
Confidence 344 44789999999 99999999888754 58999999999999985 67788889999999987643 3468999
Q ss_pred EEEcCCCC------C----------------------chHHHHhccccCcEEEEEecC
Q psy8015 93 IHVGAAYP------R----------------------YPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 93 I~i~~~~~------~----------------------~p~~l~~~LkpgG~lvi~~~~ 122 (165)
|+++..+. . +.+...+.|||||+++...-.
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99975431 0 123457899999999997643
No 61
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=8.7e-13 Score=106.91 Aligned_cols=102 Identities=13% Similarity=0.013 Sum_probs=78.9
Q ss_pred HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDA 92 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~ 92 (165)
.+++.+.. .++.+|||+ ||+|..+..+++...+|+++|+|+++++.++ .+..++ ++++...|...... .++||+
T Consensus 111 ~~~~~~~~-~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~-~~~fD~ 187 (287)
T PRK12335 111 EVLEAVQT-VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI-QEEYDF 187 (287)
T ss_pred HHHHHhhc-cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc-cCCccE
Confidence 34444433 345699999 9999999999998889999999999999986 444566 79999998765322 468999
Q ss_pred EEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015 93 IHVGAAYPRYP--------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 93 I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~ 120 (165)
|++....++++ ..+.+.|+|||++++..
T Consensus 188 I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 188 ILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99988766443 35788999999977654
No 62
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.43 E-value=2.4e-12 Score=100.41 Aligned_cols=111 Identities=15% Similarity=0.061 Sum_probs=82.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhccc-ccC-------------CCCC
Q psy8015 8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLS-STI-------------DPDH 72 (165)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~-~~~-------------~~~n 72 (165)
+..+.....++..+.. .++.+|||+ ||.|..+.+||..+.+|+|+|+|+.+++.+.. +.. ...+
T Consensus 17 ~~p~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (213)
T TIGR03840 17 SEVNPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGN 95 (213)
T ss_pred CCCCHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCc
Confidence 3445556666665532 577899999 99999999999999999999999999998631 100 1236
Q ss_pred eEEEEccCCCCCCC-CCCccEEEEcCCCCCchH--------HHHhccccCcEEEEE
Q psy8015 73 DYDLIADGRASFGD-NGPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIP 119 (165)
Q Consensus 73 V~~~~gD~~~~~~~-~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~ 119 (165)
|+++++|..+...+ .++||.|+-.+...++|. .+.+.|||||++++.
T Consensus 96 v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 96 IEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred eEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99999998764322 357999988777666653 578999999985554
No 63
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.43 E-value=8.6e-13 Score=106.47 Aligned_cols=108 Identities=15% Similarity=0.052 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHhc---CCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCC
Q psy8015 10 VSGAVAKYVTYLSG---HSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGR 81 (165)
Q Consensus 10 ~~~~~~~~l~~l~~---~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~ 81 (165)
...+..+.++.+.. ++||++|||| ||-|.++..+|+. .-+|+++.+|++..+.|+ +++.|+.+ +++...|..
T Consensus 43 Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~ 122 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence 44445555554433 3799999999 9999999999988 569999999999999996 67778764 999999965
Q ss_pred CCCCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015 82 ASFGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 82 ~~~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~ 120 (165)
+ ++ .+||+|+.-+..+++. +.+.+.|||||++++-.
T Consensus 123 ~-~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 123 D-LP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp G------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred c-cC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 4 33 3899999998887663 35789999999998743
No 64
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.42 E-value=1.8e-13 Score=114.35 Aligned_cols=125 Identities=10% Similarity=-0.002 Sum_probs=97.7
Q ss_pred CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC----------------C
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD----------------N 87 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~----------------~ 87 (165)
+.+|||+ ||+|.++..+++.+.+|+++|.++.+++.|+ .+..+++|++++.+|+.+.++. .
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 3689999 9999999999999999999999999999996 5556788999999998653211 1
Q ss_pred CCccEEEEcCCCCCchHHHH-hccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015 88 GPYDAIHVGAAYPRYPEIFI-HHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV 155 (165)
Q Consensus 88 ~~fD~I~i~~~~~~~p~~l~-~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~ 155 (165)
.+||+||++....-+.+++. ...+|++.+++.|++.+. ..+..+.+ +|..+.+..+++.|.+.+
T Consensus 287 ~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~~----gY~l~~v~~~DmFPqT~H 352 (362)
T PRK05031 287 YNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLSQ----THKVERFALFDQFPYTHH 352 (362)
T ss_pred CCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHcC----CcEEEEEEEcccCCCCCc
Confidence 25999999988765555443 334578999999987654 44555532 399999999999998864
No 65
>PRK08317 hypothetical protein; Provisional
Probab=99.42 E-value=2.1e-12 Score=100.21 Aligned_cols=108 Identities=13% Similarity=0.055 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccc-cCCCCCeEEEEccCCCCCCCC
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSS-TIDPDHDYDLIADGRASFGDN 87 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~-~~~~~nV~~~~gD~~~~~~~~ 87 (165)
....+++.+. ..++++|||+ ||+|..+..+++.. .+|+++|.++++++.|+.+ .....+++++.+|........
T Consensus 7 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 85 (241)
T PRK08317 7 YRARTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPD 85 (241)
T ss_pred HHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCC
Confidence 3455666664 4789999999 99999999998865 5899999999999999732 223457999999986532334
Q ss_pred CCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015 88 GPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 88 ~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~ 121 (165)
++||.|++....++++ +.+.+.|||||++++...
T Consensus 86 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 86 GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 7899999987776543 468899999999998653
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.42 E-value=1.5e-12 Score=108.03 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=89.1
Q ss_pred EEecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEc
Q psy8015 4 VFVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIA 78 (165)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g 78 (165)
||+-...+.-...+++.+.. ....+|||+ ||+|.++..+++.. .+|+++|+|+.+++.|+ ++..++ +.+++.+
T Consensus 175 vFs~~~lD~gt~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~ 252 (342)
T PRK09489 175 VFSRDGLDVGSQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFAS 252 (342)
T ss_pred CCCCCCCCHHHHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEc
Confidence 56666676677788888854 456689999 99999999999876 38999999999999996 454454 3577888
Q ss_pred cCCCCCCCCCCccEEEEcCCCCCc-----------hHHHHhccccCcEEEEEecC
Q psy8015 79 DGRASFGDNGPYDAIHVGAAYPRY-----------PEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 79 D~~~~~~~~~~fD~I~i~~~~~~~-----------p~~l~~~LkpgG~lvi~~~~ 122 (165)
|..... .++||.|+++..++.- ...+.+.|||||+++++.+.
T Consensus 253 D~~~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 253 NVFSDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cccccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 876533 4689999998776531 23467889999999997754
No 67
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=1.4e-12 Score=111.14 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=80.1
Q ss_pred HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC--CCCC
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF--GDNG 88 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~--~~~~ 88 (165)
....++ ...++++|||+ ||+|..|..+++.. ++|+++|+++++++.++ +++.|.. ++++.+|+.... ...+
T Consensus 235 ~~~~~l-~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 235 LAATLL-APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHHc-CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcccC
Confidence 333455 45789999999 99999999999876 48999999999999995 6666764 789999987532 2246
Q ss_pred CccEEEEcCCCCC----------------------------chHHHHhccccCcEEEEEec
Q psy8015 89 PYDAIHVGAAYPR----------------------------YPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 89 ~fD~I~i~~~~~~----------------------------~p~~l~~~LkpgG~lvi~~~ 121 (165)
+||.|++++.+.. +.+.+.+.|||||+++....
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 7999998865421 12346789999999998753
No 68
>PRK14968 putative methyltransferase; Provisional
Probab=99.42 E-value=2.5e-12 Score=96.90 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=81.1
Q ss_pred HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCC--eEEEEccCCCCCCCCCCc
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDH--DYDLIADGRASFGDNGPY 90 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~n--V~~~~gD~~~~~~~~~~f 90 (165)
.+.+++.. .+++++||+ ||+|+++..+++...+|+++|+++++++.++ ++..+..+ +.++++|..+.+.+ .+|
T Consensus 14 ~l~~~~~~-~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~ 91 (188)
T PRK14968 14 LLAENAVD-KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG-DKF 91 (188)
T ss_pred HHHHhhhc-cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc-cCc
Confidence 34555543 688999999 9999999999988889999999999999885 44445544 89999998765543 489
Q ss_pred cEEEEcCCCCC---------------------------chHHHHhccccCcEEEEEecC
Q psy8015 91 DAIHVGAAYPR---------------------------YPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 91 D~I~i~~~~~~---------------------------~p~~l~~~LkpgG~lvi~~~~ 122 (165)
|+|+.+..... +.+++.+.|||||.+++....
T Consensus 92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 99998754311 234667999999999887654
No 69
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=1.5e-12 Score=103.33 Aligned_cols=94 Identities=11% Similarity=-0.023 Sum_probs=75.4
Q ss_pred CCCCeEEEE-ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEc
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~ 96 (165)
.++.+|||+ ||+|..+..+++. ..+|+++|.|++|++.|+ ++..+.. +++++.+|+.+. + ...||+|+++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A-IENASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-C-CCCCCEEehh
Confidence 578999999 9999999888874 258999999999999996 4444543 799999998653 2 2459999988
Q ss_pred CCCCCch--------HHHHhccccCcEEEEEe
Q psy8015 97 AAYPRYP--------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 97 ~~~~~~p--------~~l~~~LkpgG~lvi~~ 120 (165)
...++++ .++.+.|||||++++..
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7776553 36789999999999964
No 70
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=1.2e-12 Score=111.96 Aligned_cols=106 Identities=15% Similarity=0.082 Sum_probs=81.5
Q ss_pred HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-C
Q psy8015 15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-N 87 (165)
Q Consensus 15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~ 87 (165)
..++..+....++++|||+ ||+|..|..+++.. ++|+++|+++++++.++ ++++|++|++++++|+.+.... .
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc
Confidence 3344433345789999999 99999999999864 68999999999999995 6778888899999998764221 2
Q ss_pred CCccEEEEcCCCCC----------------------------chHHHHhccccCcEEEEEe
Q psy8015 88 GPYDAIHVGAAYPR----------------------------YPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 88 ~~fD~I~i~~~~~~----------------------------~p~~l~~~LkpgG~lvi~~ 120 (165)
+.||+|++++.+.. +.+...+.|||||+|+...
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 68999999865321 1224568899999999653
No 71
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=1.5e-12 Score=107.31 Aligned_cols=103 Identities=13% Similarity=0.003 Sum_probs=79.7
Q ss_pred HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCCCCC
Q psy8015 15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGDNGP 89 (165)
Q Consensus 15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~~~~ 89 (165)
.+++..+.. .++++|||| ||+|+++..++... .+|+++|.++.++..++ .+..+ ..|++++.+|..+. +..++
T Consensus 112 ~~l~~~l~~-l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~~~~ 189 (322)
T PRK15068 112 DRVLPHLSP-LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PALKA 189 (322)
T ss_pred HHHHHhhCC-CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CCcCC
Confidence 455556643 468999999 99999999998875 46999999999998764 12222 24799999998653 33578
Q ss_pred ccEEEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015 90 YDAIHVGAAYPRYP------EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 90 fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~ 119 (165)
||+|++.+..++.. ..+.+.|+|||++++.
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99999988876653 3678999999999975
No 72
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.41 E-value=1.7e-12 Score=103.33 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=77.5
Q ss_pred EEecCCchHHHHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCC-CCeEEEE
Q psy8015 4 VFVSGSVSGAVAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDP-DHDYDLI 77 (165)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~ 77 (165)
.|+++.-+. ...+++.+.. ..++++|||+ ||+|+++..+++... +|+++|+|+.+++.|+ .+..++ .++++..
T Consensus 97 afgtg~h~t-t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~ 175 (250)
T PRK00517 97 AFGTGTHPT-TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ 175 (250)
T ss_pred ccCCCCCHH-HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc
Confidence 467776444 3335555532 2578999999 999999998888764 5999999999999996 444454 3355444
Q ss_pred ccCCCCCCCCCCccEEEEcCCCCC---chHHHHhccccCcEEEEEe
Q psy8015 78 ADGRASFGDNGPYDAIHVGAAYPR---YPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 78 gD~~~~~~~~~~fD~I~i~~~~~~---~p~~l~~~LkpgG~lvi~~ 120 (165)
+|. +||+|+++...+. +.+.+.+.|||||++++.-
T Consensus 176 ~~~--------~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 176 GDL--------KADVIVANILANPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred CCC--------CcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 432 7999998755432 3356789999999999863
No 73
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.41 E-value=2.7e-13 Score=113.00 Aligned_cols=125 Identities=10% Similarity=-0.043 Sum_probs=97.5
Q ss_pred CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC----------------C
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD----------------N 87 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~----------------~ 87 (165)
+++|||+ ||+|.++..|++.+.+|+++|.++++++.|+ .+..+++|++++.+|+.+.++. .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 3579999 9999999999999899999999999999996 5556788999999998653221 1
Q ss_pred CCccEEEEcCCCCCchH-HHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015 88 GPYDAIHVGAAYPRYPE-IFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV 155 (165)
Q Consensus 88 ~~fD~I~i~~~~~~~p~-~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~ 155 (165)
..||.|+++....-+.+ .+...++|++.+++.|++.+. ..+..+.+ + |....+..+++.|.+.+
T Consensus 278 ~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~~L~~---~-Y~l~~v~~~DmFP~T~H 343 (353)
T TIGR02143 278 YNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANLEQLSE---T-HRVERFALFDQFPYTHH 343 (353)
T ss_pred CCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHhc---C-cEEEEEEEcccCCCCCc
Confidence 24899999987655433 334445689999999987664 45555542 3 99999999999998864
No 74
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.41 E-value=6.8e-13 Score=101.80 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=79.6
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC---CCCCCccEEEEc
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF---GDNGPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~---~~~~~fD~I~i~ 96 (165)
.+..++||| ||+|.++..+|+.. .+|+++|+++++++.|+ .+..+++|++++++|+...+ .+.+.||.|+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 356799999 99999999999875 58999999999999985 55667889999999986422 234589999998
Q ss_pred CCCCC--------------chHHHHhccccCcEEEEEecCC
Q psy8015 97 AAYPR--------------YPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 97 ~~~~~--------------~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
...+. +...+.+.|||||++++.....
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 65431 2346789999999999877654
No 75
>PTZ00146 fibrillarin; Provisional
Probab=99.41 E-value=2e-12 Score=104.81 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=72.8
Q ss_pred CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--C-CCCCccEEEEc
Q psy8015 24 HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--G-DNGPYDAIHVG 96 (165)
Q Consensus 24 ~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--~-~~~~fD~I~i~ 96 (165)
++|+++|||+ ||+|++|..+|+++ ++|+|+|++++|.+.........+||.++.+|+.... . ....||+||++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 3789999999 99999999999987 6899999999755333200001268999999986432 1 23579999999
Q ss_pred CCCCCch----HHHHhccccCcEEEEEec
Q psy8015 97 AAYPRYP----EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 97 ~~~~~~p----~~l~~~LkpgG~lvi~~~ 121 (165)
.+.++-. .++.+.|||||++++.+.
T Consensus 210 va~pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 210 VAQPDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CCCcchHHHHHHHHHHhccCCCEEEEEEe
Confidence 8754422 346789999999999543
No 76
>PLN03075 nicotianamine synthase; Provisional
Probab=99.39 E-value=2.3e-12 Score=104.62 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-cccc-HHHHHHhcc-C--CcEEEEeCCHHHHHhcc--cc-cCCCC-CeEEEEccCCC
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNT-KQSTTLPTF-I--PNSFNINVYYYLSGGPL--SS-TIDPD-HDYDLIADGRA 82 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG-~~t~~la~~-~--~~V~aiD~~~~~~~~A~--~~-~~~~~-nV~~~~gD~~~ 82 (165)
....+++..+.. .+.++|+|| ||.| +.+.+++.. . ++++++|+|+++++.|| ++ ..++. +++|+.+|+.+
T Consensus 110 ~lE~~~L~~~~~-~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~ 188 (296)
T PLN03075 110 KLEFDLLSQHVN-GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD 188 (296)
T ss_pred HHHHHHHHHhhc-CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh
Confidence 344566666654 478999999 9955 666666642 2 57999999999999997 43 36765 49999999977
Q ss_pred CCCCCCCccEEEEcCCCCC--------chHHHHhccccCcEEEEEe
Q psy8015 83 SFGDNGPYDAIHVGAAYPR--------YPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 83 ~~~~~~~fD~I~i~~~~~~--------~p~~l~~~LkpgG~lvi~~ 120 (165)
..+..++||+||+. +... +-+.+.+.|+|||.+++-.
T Consensus 189 ~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 54445789999999 4332 2256889999999999965
No 77
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.39 E-value=1.4e-12 Score=95.55 Aligned_cols=102 Identities=16% Similarity=0.080 Sum_probs=78.5
Q ss_pred HHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015 14 VAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD 91 (165)
Q Consensus 14 ~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD 91 (165)
....+..+.. ..++.+|||+ ||+|.++..+++...+|+++|+++.+++. .++.....+........++||
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~fD 80 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPPFPDGSFD 80 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHHCHSSSEE
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhhccccchh
Confidence 3444454432 3689999999 99999999998887899999999999986 234444443333333457999
Q ss_pred EEEEcCCCCCchH------HHHhccccCcEEEEEecCC
Q psy8015 92 AIHVGAAYPRYPE------IFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 92 ~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~~~ 123 (165)
+|++....+++++ .+.+.|||||++++.....
T Consensus 81 ~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 81 LIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 9999999998874 5789999999999987653
No 78
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=1.7e-12 Score=111.64 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC-C-CCCCCc
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS-F-GDNGPY 90 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~-~-~~~~~f 90 (165)
...+++.+.. .++.+|||+ ||+|.++..|++..++|+++|.+++|++.++......+|++++++|+... + .+.++|
T Consensus 26 ~~~il~~l~~-~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 26 RPEILSLLPP-YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred hhHHHhhcCc-cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence 4566666643 567899999 99999999999998999999999999998862222246899999998532 2 234689
Q ss_pred cEEEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015 91 DAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPI 120 (165)
Q Consensus 91 D~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~ 120 (165)
|+|++....+++++ .+.+.|||||++++..
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 99999988776543 5789999999998853
No 79
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.39 E-value=2.1e-12 Score=106.06 Aligned_cols=102 Identities=12% Similarity=0.008 Sum_probs=77.5
Q ss_pred HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc-ccc-CC-CCCeEEEEccCCCCCCCCCCc
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL-SST-ID-PDHDYDLIADGRASFGDNGPY 90 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~-~~~-~~-~~nV~~~~gD~~~~~~~~~~f 90 (165)
+++..+.. .++++|||| ||+|+++..++... .+|+++|.|+.|+.+++ .++ .+ ..++.+...+..+ ++....|
T Consensus 112 ~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~-lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ-LHELYAF 189 (314)
T ss_pred HHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH-CCCCCCc
Confidence 45555533 578999999 99999998888765 47999999999998764 221 12 3468888888754 3434689
Q ss_pred cEEEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015 91 DAIHVGAAYPRYP------EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 91 D~I~i~~~~~~~p------~~l~~~LkpgG~lvi~ 119 (165)
|+|++.+...+.+ .++.+.|||||+|++.
T Consensus 190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999887654 3678999999999985
No 80
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=8.3e-13 Score=112.50 Aligned_cols=139 Identities=9% Similarity=-0.022 Sum_probs=109.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC---
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD--- 86 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~--- 86 (165)
+....++++.. .+++++||+ ||.|-+|..||+...+|+++|+++++++.|+ .+..+++|++|+.+|+.+-.+.
T Consensus 281 l~~~a~~~~~~-~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 281 LYETALEWLEL-AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHHHhh-cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34455666643 678999999 9999999999999999999999999999996 6777899999999998763332
Q ss_pred CCCccEEEEcCCCCCchH---HHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015 87 NGPYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV 155 (165)
Q Consensus 87 ~~~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~ 155 (165)
...||.|+++....-..+ .....++|-.++++.|++.+. ..+..+.. ++|....+..++..|.+.+
T Consensus 360 ~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~---~gy~i~~v~~~DmFP~T~H 429 (432)
T COG2265 360 GYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILAS---TGYEIERVQPFDMFPHTHH 429 (432)
T ss_pred cCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh---CCeEEEEEEEeccCCCccc
Confidence 357899999977654443 234678899999999998764 45555544 3477888888888888764
No 81
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.39 E-value=2.7e-12 Score=106.36 Aligned_cols=103 Identities=9% Similarity=-0.029 Sum_probs=79.3
Q ss_pred HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA 92 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~ 92 (165)
..++.+....++.+|||+ ||+|.++..+++.. .+|+++|.+++|++.|+.+ ....|++++.+|+.+...+.++||+
T Consensus 103 ~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k-~~~~~i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 103 DALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred HHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-hhccCCeEEeccHHhCCCCCCceeE
Confidence 344443222468899999 99999998888754 5899999999999999732 2345799999998763334578999
Q ss_pred EEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015 93 IHVGAAYPRYP------EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 93 I~i~~~~~~~p------~~l~~~LkpgG~lvi~ 119 (165)
|++....++.+ +++.+.|||||++++.
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99988777654 3688999999999875
No 82
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.38 E-value=5e-12 Score=107.75 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCC
Q psy8015 11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASF 84 (165)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~ 84 (165)
+.....+..+|. ..++++|||+ ||+|+.|..+++.. ++|+++|+++++++.++ ++++|++ ++++..+|+....
T Consensus 224 d~~s~~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 224 DASAQWVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred CHHHHHHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 333444555554 5789999999 99999999999876 59999999999999985 6677775 2344667765322
Q ss_pred C--CCCCccEEEEcCCCC------Cch----------------------HHHHhccccCcEEEEEec
Q psy8015 85 G--DNGPYDAIHVGAAYP------RYP----------------------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 85 ~--~~~~fD~I~i~~~~~------~~p----------------------~~l~~~LkpgG~lvi~~~ 121 (165)
. +.++||+|++++.+. +.| +...+.|||||+|+....
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 1 356899999975432 222 235788999999999754
No 83
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.38 E-value=4.3e-12 Score=103.00 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=81.0
Q ss_pred EEecCCchHH--HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEE
Q psy8015 4 VFVSGSVSGA--VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDL 76 (165)
Q Consensus 4 ~~~~~~~~~~--~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~ 76 (165)
.|++|.-+.. ..++++.+. .++++|||+ ||+|+++..+++.. .+|+++|+|+.+++.|+ .+..+.. ++.+.
T Consensus 137 aFgtG~h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~ 214 (288)
T TIGR00406 137 AFGTGTHPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVK 214 (288)
T ss_pred cccCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEE
Confidence 4777764433 223344332 578999999 99999999888875 58999999999999996 4444554 46777
Q ss_pred EccCCCCCCCCCCccEEEEcCCCCC---chHHHHhccccCcEEEEEe
Q psy8015 77 IADGRASFGDNGPYDAIHVGAAYPR---YPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 77 ~gD~~~~~~~~~~fD~I~i~~~~~~---~p~~l~~~LkpgG~lvi~~ 120 (165)
.+|... . ..++||+|+++...+. +.+.+.+.|||||++++.-
T Consensus 215 ~~~~~~-~-~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 215 LIYLEQ-P-IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred eccccc-c-cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 776322 2 2468999999765543 3356789999999999853
No 84
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.38 E-value=3.2e-13 Score=92.29 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=54.0
Q ss_pred EEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC--CCCccEEEEcCCCCCch
Q psy8015 31 LAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD--NGPYDAIHVGAAYPRYP 103 (165)
Q Consensus 31 Lei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~--~~~fD~I~i~~~~~~~p 103 (165)
||| ||+|.++..+... ..+++++|+|+.|++.|+ ++..+..+......+..+.... .++||.|++....++++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799 9999999999888 468999999999998885 4555555555555554443222 25899999999998875
Q ss_pred H------HHHhccccCcEE
Q psy8015 104 E------IFIHHLKSGGRL 116 (165)
Q Consensus 104 ~------~l~~~LkpgG~l 116 (165)
+ .+.+.|||||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 3 578999999986
No 85
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=4.1e-12 Score=102.83 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=97.1
Q ss_pred EEecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEc
Q psy8015 4 VFVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIA 78 (165)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g 78 (165)
|||-..++.=.+-+++.|.. ..+.+|||+ ||.|++++.+++..+ +|+-+|+|..+++.|| ++..+.+|.+++..
T Consensus 137 VFS~~~lD~GS~lLl~~l~~-~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s 215 (300)
T COG2813 137 VFSRDKLDKGSRLLLETLPP-DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS 215 (300)
T ss_pred CCcCCCcChHHHHHHHhCCc-cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe
Confidence 68888899999999999976 556699999 999999999999985 8999999999999997 55556777788888
Q ss_pred cCCCCCCCCCCccEEEEcCCCCC-----------chHHHHhccccCcEEEEEecC
Q psy8015 79 DGRASFGDNGPYDAIHVGAAYPR-----------YPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 79 D~~~~~~~~~~fD~I~i~~~~~~-----------~p~~l~~~LkpgG~lvi~~~~ 122 (165)
|..+...+ +||.|+++..++. +.....+.|++||.|.++...
T Consensus 216 ~~~~~v~~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 216 NLYEPVEG--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR 268 (300)
T ss_pred cccccccc--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence 88776554 8999999988762 223457899999999998873
No 86
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.37 E-value=7.1e-12 Score=101.62 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=76.0
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~ 98 (165)
.++.+|||+ ||+|.++..+++.. .+|+++|+|+++++.|+ .+..++. +++++.+|..+.++ ..+||+|+++..
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~-~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP-GRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC-CCCccEEEECCC
Confidence 456799999 99999999999875 48999999999999996 5556664 69999999876553 357999999743
Q ss_pred CC-------------Cc------------------hHHHHhccccCcEEEEEecC
Q psy8015 99 YP-------------RY------------------PEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 99 ~~-------------~~------------------p~~l~~~LkpgG~lvi~~~~ 122 (165)
.. +- ...+.+.|+|||++++-++.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 21 01 12346799999999998874
No 87
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.8e-12 Score=104.08 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=82.4
Q ss_pred EEecCCchHH--HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEE
Q psy8015 4 VFVSGSVSGA--VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDL 76 (165)
Q Consensus 4 ~~~~~~~~~~--~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~ 76 (165)
-|++|+=+.. --++++.+. .++++|||+ ||||.++...++++ .+|+++|+||-+++.|+ .+..+.++ ++..
T Consensus 140 AFGTG~HpTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 140 AFGTGTHPTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217 (300)
T ss_pred ccCCCCChhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcc
Confidence 4788875544 346666653 589999999 99999999999997 57999999999999996 44444443 2233
Q ss_pred EccCCCCCCCCCCccEEEEcCCCC---CchHHHHhccccCcEEEEE
Q psy8015 77 IADGRASFGDNGPYDAIHVGAAYP---RYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 77 ~gD~~~~~~~~~~fD~I~i~~~~~---~~p~~l~~~LkpgG~lvi~ 119 (165)
..+... .+..++||+|+.+--.. .+.+.+.+.|||||+++..
T Consensus 218 ~~~~~~-~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 218 GFLLLE-VPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred cccchh-hcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEE
Confidence 333322 23346999999985322 3456788999999999986
No 88
>PRK05785 hypothetical protein; Provisional
Probab=99.36 E-value=7.1e-12 Score=98.48 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCC
Q psy8015 12 GAVAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNG 88 (165)
Q Consensus 12 ~~~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~ 88 (165)
.+..++++.+... .++.+|||+ ||||.++..+++.. .+|+++|.|++|++.|+.+ ..++++|+.+...+++
T Consensus 36 ~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~------~~~~~~d~~~lp~~d~ 109 (226)
T PRK05785 36 RWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA------DDKVVGSFEALPFRDK 109 (226)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc------cceEEechhhCCCCCC
Confidence 3444555555322 457899999 99999999999874 7999999999999999743 1357888876434468
Q ss_pred CccEEEEcCCCCCchH------HHHhccccC
Q psy8015 89 PYDAIHVGAAYPRYPE------IFIHHLKSG 113 (165)
Q Consensus 89 ~fD~I~i~~~~~~~p~------~l~~~Lkpg 113 (165)
+||+|++..+.+++++ ++.+.|||.
T Consensus 110 sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 110 SFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 9999999988876653 678999994
No 89
>KOG1540|consensus
Probab=99.36 E-value=8.2e-12 Score=98.74 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=84.5
Q ss_pred chHHHHHH-HHHHhcCCCCCeEEEE-ccccHHHHHHhccC--------CcEEEEeCCHHHHHhcc--cccCCC---CCeE
Q psy8015 10 VSGAVAKY-VTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--------PNSFNINVYYYLSGGPL--SSTIDP---DHDY 74 (165)
Q Consensus 10 ~~~~~~~~-l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--------~~V~aiD~~~~~~~~A~--~~~~~~---~nV~ 74 (165)
+-+.+..+ +.+| ...++.++||+ +|||..|-.+.+.+ .+|+.+|+|++|+..++ .++.++ ..+.
T Consensus 84 iHRlWKd~~v~~L-~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~ 162 (296)
T KOG1540|consen 84 IHRLWKDMFVSKL-GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVE 162 (296)
T ss_pred hhHHHHHHhhhcc-CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceE
Confidence 44445544 4444 34788999999 99999998887754 47999999999999985 323343 2399
Q ss_pred EEEccCCCCCCCCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015 75 DLIADGRASFGDNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 75 ~~~gD~~~~~~~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~ 120 (165)
++.+||.+...+++.||+..+..+..+.+ .+..+.||||||+.+..
T Consensus 163 w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 163 WVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred EEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999988666678999999998876544 36789999999998753
No 90
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.36 E-value=6.1e-13 Score=91.45 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=64.6
Q ss_pred EEEE-ccccHHHHHHhccC-----CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCC-CC
Q psy8015 30 CLAL-TSNTKQSTTLPTFI-----PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAA-YP 100 (165)
Q Consensus 30 vLei-~GsG~~t~~la~~~-----~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~-~~ 100 (165)
|||+ ||+|..+..+++.. .+++++|+|++|++.|+ .+..+. +++++++|+.+.....++||+|++.+. .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999 99999999999875 68999999999999996 433444 899999999763334579999999554 66
Q ss_pred Cch--------HHHHhccccCc
Q psy8015 101 RYP--------EIFIHHLKSGG 114 (165)
Q Consensus 101 ~~p--------~~l~~~LkpgG 114 (165)
++. +++.+.|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 554 35788999987
No 91
>PRK04457 spermidine synthase; Provisional
Probab=99.36 E-value=5.5e-12 Score=101.20 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCC-C
Q psy8015 15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGD-N 87 (165)
Q Consensus 15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~-~ 87 (165)
..|+..+....+.++|||| ||+|+++..+++.. .+|+++|+|+++++.|+ +...+ .++++++.+|+.+.+.. .
T Consensus 55 ~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~ 134 (262)
T PRK04457 55 RAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR 134 (262)
T ss_pred HHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC
Confidence 3444444433567899999 99999999888765 58999999999999997 33323 35799999998653322 3
Q ss_pred CCccEEEEcCCCC-Cch---------HHHHhccccCcEEEEEecC
Q psy8015 88 GPYDAIHVGAAYP-RYP---------EIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 88 ~~fD~I~i~~~~~-~~p---------~~l~~~LkpgG~lvi~~~~ 122 (165)
++||+|+++.-.. .+| +.+.+.|+|||++++.+..
T Consensus 135 ~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 135 HSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 5899999985322 222 3577999999999997643
No 92
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.36 E-value=7.4e-12 Score=97.31 Aligned_cols=108 Identities=11% Similarity=0.076 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC
Q psy8015 12 GAVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD 86 (165)
Q Consensus 12 ~~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~ 86 (165)
.....+++.+... .++.+|||+ ||+|.++..+++.. .+++++|+++++++.++.+. . +|++++.+|.......
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~-~-~~~~~~~~d~~~~~~~ 95 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL-S-ENVQFICGDAEKLPLE 95 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-C-CCCeEEecchhhCCCC
Confidence 3445566666532 234799999 99999999999876 46899999999999886321 1 4799999998764434
Q ss_pred CCCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015 87 NGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 87 ~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~ 121 (165)
.++||+|++....++.+ +.+.+.|+|||++++...
T Consensus 96 ~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 96 DSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 57899999988776542 467899999999998653
No 93
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.35 E-value=9.3e-12 Score=95.99 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCC
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNG 88 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~ 88 (165)
....+++.+.. .++.+|||+ ||+|..+..+++... +++++|+++.+++.++.+.....+++++.+|..+...+.+
T Consensus 27 ~~~~~~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (223)
T TIGR01934 27 WRRRAVKLIGV-FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDN 105 (223)
T ss_pred HHHHHHHHhcc-CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCC
Confidence 34456666643 578999999 999999999988764 8999999999999886221134579999999876433456
Q ss_pred CccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015 89 PYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 89 ~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~ 120 (165)
+||+|++....++++ +.+.+.|+|||++++..
T Consensus 106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred cEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 899999987766543 36789999999999754
No 94
>KOG1270|consensus
Probab=99.35 E-value=6e-13 Score=105.41 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=74.2
Q ss_pred CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccc-cCCC---C----CeEEEEccCCCCCCCCCCccEEEEcC
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSS-TIDP---D----HDYDLIADGRASFGDNGPYDAIHVGA 97 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~-~~~~---~----nV~~~~gD~~~~~~~~~~fD~I~i~~ 97 (165)
|++|||+ ||+|-++..||+++..|+++|.+++|++.||.. ..+. . .+++.+.|+... .++||+|++.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence 4889999 999999999999999999999999999999732 2221 1 256666776432 24699999998
Q ss_pred CCCCc--h----HHHHhccccCcEEEEEecCC
Q psy8015 98 AYPRY--P----EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 98 ~~~~~--p----~~l~~~LkpgG~lvi~~~~~ 123 (165)
.++|+ | +.+.+.|||||+|++.....
T Consensus 167 vleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 167 VLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 88876 4 35789999999999976543
No 95
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.35 E-value=1.3e-12 Score=101.02 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=86.7
Q ss_pred HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015 15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD 91 (165)
Q Consensus 15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD 91 (165)
..++..+. ..+..+|.|+ ||+|..|..|++.- ..++++|-|++|++.|+-+ +.|++|..+|.. .|.+..++|
T Consensus 20 ~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r---lp~~~f~~aDl~-~w~p~~~~d 94 (257)
T COG4106 20 RDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR---LPDATFEEADLR-TWKPEQPTD 94 (257)
T ss_pred HHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh---CCCCceecccHh-hcCCCCccc
Confidence 34555543 3678999999 99999999999875 5899999999999999532 568999999985 466678999
Q ss_pred EEEEcCCCCCchH------HHHhccccCcEEEEEecCC
Q psy8015 92 AIHVGAAYPRYPE------IFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 92 ~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~~~ 123 (165)
++|.+++++.+|+ .+..+|+|||.|.+-+.+.
T Consensus 95 llfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 95 LLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 9999999998886 5789999999999987643
No 96
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.34 E-value=2e-11 Score=95.02 Aligned_cols=107 Identities=17% Similarity=0.133 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCC
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFG 85 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~ 85 (165)
....++..+. ..++.+|||+ ||+|.++..+++.. .+|+++|+++++++.++ +...+. .+++++.+|......
T Consensus 39 ~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 39 WRRKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 3445566664 3578999999 99999999998876 68999999999999996 333223 469999999876443
Q ss_pred CCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015 86 DNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 86 ~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~ 120 (165)
+.++||+|++....++.+ +.+.+.|+|||++++..
T Consensus 118 ~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 457899999987666443 36789999999998754
No 97
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.34 E-value=1.1e-11 Score=104.34 Aligned_cols=102 Identities=12% Similarity=0.033 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015 15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA 92 (165)
Q Consensus 15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~ 92 (165)
..+++.+. ++++++|||| ||+|.++..+++.. .+|+++|+|+++++.|+.+..+. ++++..+|.... .++||.
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l---~~~fD~ 231 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDL---NGQFDR 231 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhc---CCCCCE
Confidence 34445543 4789999999 99999999999764 58999999999999997332233 588888987542 368999
Q ss_pred EEEcCCCCCch--------HHHHhccccCcEEEEEec
Q psy8015 93 IHVGAAYPRYP--------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 93 I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~ 121 (165)
|++....++++ +.+.+.|||||++++...
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 99877665542 357889999999998653
No 98
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.34 E-value=1.4e-11 Score=96.95 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN 87 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~ 87 (165)
....++..+. ..+.+|||+ ||+|.++..+++.. .+|+++|+++++++.|+ .+..+.+|++++.+|..+.++ .
T Consensus 76 l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~ 152 (251)
T TIGR03534 76 LVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP-G 152 (251)
T ss_pred HHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc-C
Confidence 3444455542 345699999 99999999999874 48999999999999996 555677789999999876443 4
Q ss_pred CCccEEEEcCCCCC--------------------------------chHHHHhccccCcEEEEEecCC
Q psy8015 88 GPYDAIHVGAAYPR--------------------------------YPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 88 ~~fD~I~i~~~~~~--------------------------------~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
++||+|+++..... +.+.+.+.|+|||++++..+..
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~ 220 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD 220 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc
Confidence 78999998643221 1134568999999999988653
No 99
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.34 E-value=1.4e-11 Score=97.02 Aligned_cols=94 Identities=13% Similarity=-0.009 Sum_probs=75.5
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC----CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEc
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~ 96 (165)
.++.+|||+ ||+|..+..+++.. .+|+++|++++|++.|+ ++..+. .+++++++|..... ...+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCCCCEEeee
Confidence 578899999 99999999888753 47999999999999996 444443 47999999986532 2368999998
Q ss_pred CCCCCch--------HHHHhccccCcEEEEEe
Q psy8015 97 AAYPRYP--------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 97 ~~~~~~p--------~~l~~~LkpgG~lvi~~ 120 (165)
...++++ +++.+.|+|||++++..
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 8877664 35789999999999864
No 100
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.33 E-value=1.2e-11 Score=100.08 Aligned_cols=109 Identities=19% Similarity=0.126 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCC
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDN 87 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~ 87 (165)
+...++.+....+..+|||+ ||+|.++..++... .+|+++|+|+++++.|+ .+.++..+ ++++.+|..+.++.
T Consensus 102 v~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~- 180 (284)
T TIGR00536 102 VEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG- 180 (284)
T ss_pred HHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC-
Confidence 33444443222333799999 99999999999875 48999999999999996 55566654 99999998765532
Q ss_pred CCccEEEEcCCCC-------------Cch------------------HHHHhccccCcEEEEEecCC
Q psy8015 88 GPYDAIHVGAAYP-------------RYP------------------EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 88 ~~fD~I~i~~~~~-------------~~p------------------~~l~~~LkpgG~lvi~~~~~ 123 (165)
.+||+|+++...- +-| +...+.|+|||.+++-++..
T Consensus 181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 3799999974221 111 23457999999999988753
No 101
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.32 E-value=1.9e-11 Score=94.74 Aligned_cols=87 Identities=9% Similarity=0.035 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCC
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGP 89 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~ 89 (165)
..+.+.+.+....++.+|||+ ||+|+.+..|++. ..+|+++|+|++|++.|+.+ ..++++.++|+.+. .+.++
T Consensus 30 ~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~---~~~~~~~~~d~~~~-~~~~s 105 (204)
T TIGR03587 30 KLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY---LPNINIIQGSLFDP-FKDNF 105 (204)
T ss_pred HHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh---CCCCcEEEeeccCC-CCCCC
Confidence 344444444444678899999 9999999999886 36899999999999999732 24678899998773 34578
Q ss_pred ccEEEEcCCCCCch
Q psy8015 90 YDAIHVGAAYPRYP 103 (165)
Q Consensus 90 fD~I~i~~~~~~~p 103 (165)
||+|++.+...+++
T Consensus 106 fD~V~~~~vL~hl~ 119 (204)
T TIGR03587 106 FDLVLTKGVLIHIN 119 (204)
T ss_pred EEEEEECChhhhCC
Confidence 99999999887664
No 102
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.32 E-value=2e-11 Score=91.59 Aligned_cols=105 Identities=10% Similarity=-0.065 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA 92 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~ 92 (165)
..++++.+. ..++++|||+ ||+|.+|..+++...+|+++|+|+++++.++.+..+.+|++++++|+.+...+...||.
T Consensus 2 ~~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 2 IDKIVRAAN-LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHHHHhcC-CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCE
Confidence 356777774 4678999999 99999999999888899999999999999962222346899999999764433456999
Q ss_pred EEEcCCCCCchH---HHHhc--cccCcEEEEE
Q psy8015 93 IHVGAAYPRYPE---IFIHH--LKSGGRLVIP 119 (165)
Q Consensus 93 I~i~~~~~~~p~---~l~~~--LkpgG~lvi~ 119 (165)
|+.+..++...+ .+.+. +.++|.+++-
T Consensus 81 vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 81 VVGNLPYNISTPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred EEECCCcccHHHHHHHHHhcCCCcceEEEEEE
Confidence 998766553222 33322 2355555553
No 103
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.32 E-value=2.5e-11 Score=94.95 Aligned_cols=108 Identities=15% Similarity=0.033 Sum_probs=80.2
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc-cccC-------------CCCCeE
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL-SSTI-------------DPDHDY 74 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~-~~~~-------------~~~nV~ 74 (165)
......+.++.+. ..++.+|||+ ||.|..+.+||..+.+|+|+|+++.+++.+. .+.+ ...+|+
T Consensus 22 p~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 22 VNPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CCHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 4445555555443 2567899999 9999999999999889999999999999763 1111 124699
Q ss_pred EEEccCCCCCCC-CCCccEEEEcCCCCCch--------HHHHhccccCcEEEE
Q psy8015 75 DLIADGRASFGD-NGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVI 118 (165)
Q Consensus 75 ~~~gD~~~~~~~-~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi 118 (165)
+.++|..+..+. .+.||.|+-.+...++| ..+.+.|+|||++++
T Consensus 101 ~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 101 IYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999998764332 35899999777666665 357899999997444
No 104
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.32 E-value=2e-11 Score=94.97 Aligned_cols=88 Identities=14% Similarity=0.023 Sum_probs=69.7
Q ss_pred HHHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCC
Q psy8015 13 AVAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDN 87 (165)
Q Consensus 13 ~~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~ 87 (165)
...++++++.. ..++++|||+ ||+|.++..+++...+|+++|++++|++.|+ +...+. +++++.++|+.+. +
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~-- 117 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-C-- 117 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC-C--
Confidence 34567777752 3578999999 9999999999988789999999999999996 333344 4799999998653 2
Q ss_pred CCccEEEEcCCCCCch
Q psy8015 88 GPYDAIHVGAAYPRYP 103 (165)
Q Consensus 88 ~~fD~I~i~~~~~~~p 103 (165)
++||+|++.....+++
T Consensus 118 ~~fD~ii~~~~l~~~~ 133 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYP 133 (219)
T ss_pred CCcCEEEEhhHHHhCC
Confidence 6899999877765543
No 105
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.31 E-value=2.2e-11 Score=99.76 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=75.1
Q ss_pred CCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
..+|||+ ||+|.++..+++.. .+|+++|+|+++++.|+ .+..++. +++++++|..+.++ .++||+|+++...-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~-~~~fDlIvsNPPyi 212 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP-GRRYDLIVSNPPYV 212 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC-CCCccEEEECCCCC
Confidence 3799999 99999999999875 48999999999999996 5556664 59999999866554 35799999974321
Q ss_pred -------------Cc------------------hHHHHhccccCcEEEEEecCC
Q psy8015 101 -------------RY------------------PEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 101 -------------~~------------------p~~l~~~LkpgG~lvi~~~~~ 123 (165)
+- ...+.+.|+|||++++-++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 01 123567999999999987753
No 106
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.31 E-value=8.1e-12 Score=97.17 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=73.9
Q ss_pred CeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015 28 LDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAAYPR 101 (165)
Q Consensus 28 ~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~ 101 (165)
++|||| ||+|..+..+++.. .+|+++|+|+++++.|+ ++..|+. +++++.+|.... +..++||+|++....++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PFPDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CCCCCCCEeehHHHHHh
Confidence 479999 99999999998875 48999999999999996 4555654 699999998554 22358999998776655
Q ss_pred ch------HHHHhccccCcEEEEEe
Q psy8015 102 YP------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 102 ~p------~~l~~~LkpgG~lvi~~ 120 (165)
++ +.+.+.|||||++++..
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 43 46789999999999864
No 107
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.30 E-value=2.7e-11 Score=96.60 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=71.3
Q ss_pred CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC--CCCccEEEEcCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD--NGPYDAIHVGAA 98 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~--~~~fD~I~i~~~ 98 (165)
+..+|||+ ||+|.++..+++.. .+|+++|+|+++++.|+ ++.. +++++++|..+.++. .++||.|+++..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---~~~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---GGTVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CCEEEEeechhhcchhcCCCEeEEEECCC
Confidence 34689999 99999999998765 38999999999999996 3332 358899998654432 257999999864
Q ss_pred CC------Cc--------------------------hHHHHhccccCcEEEEEecCC
Q psy8015 99 YP------RY--------------------------PEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 99 ~~------~~--------------------------p~~l~~~LkpgG~lvi~~~~~ 123 (165)
+. .+ .+...+.|+|||++++..+..
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 31 01 012348999999999988754
No 108
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.30 E-value=1.9e-11 Score=102.68 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=84.9
Q ss_pred HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC--CCCCC
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS--FGDNG 88 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~--~~~~~ 88 (165)
.+++.+.. ..+..+||| ||+|.++..+|+.. ..++|+|+++.+++.|. ....+++|+.++.+|+... ..+.+
T Consensus 113 ~~~~~~~~-~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFISK-NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhcC-CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 45555543 457899999 99999999999886 58999999999999984 5667889999999998542 22357
Q ss_pred CccEEEEcCCCCC------------chHHHHhccccCcEEEEEecCC
Q psy8015 89 PYDAIHVGAAYPR------------YPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 89 ~fD~I~i~~~~~~------------~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
.+|.|++....+. ..+.+.+.|+|||.+.+.....
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 8999999876652 2346789999999999976543
No 109
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.29 E-value=4.8e-12 Score=103.04 Aligned_cols=110 Identities=10% Similarity=0.058 Sum_probs=76.1
Q ss_pred EEecCCchH--HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEE
Q psy8015 4 VFVSGSVSG--AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDL 76 (165)
Q Consensus 4 ~~~~~~~~~--~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~ 76 (165)
.|++|.=+. +--++++.+. .++++|||+ ||||.++...++++ ++|+|+|+||.+++.|+ .+..++.+ +.+.
T Consensus 139 AFGTG~H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~ 216 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS 216 (295)
T ss_dssp SS-SSHCHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES
T ss_pred cccCCCCHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE
Confidence 377776443 3445666653 688999999 99999999999987 58999999999999996 44445554 4332
Q ss_pred EccCCCCCCCCCCccEEEEcCCCC---CchHHHHhccccCcEEEEE
Q psy8015 77 IADGRASFGDNGPYDAIHVGAAYP---RYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 77 ~gD~~~~~~~~~~fD~I~i~~~~~---~~p~~l~~~LkpgG~lvi~ 119 (165)
.. .... .++||+|+.+-..+ .+.+.+.+.|+|||++++.
T Consensus 217 --~~-~~~~-~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 217 --LS-EDLV-EGKFDLVVANILADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp --CT-SCTC-CS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred --Ee-cccc-cccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEc
Confidence 21 1222 37899999875543 3345678899999999995
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=6.9e-11 Score=94.53 Aligned_cols=98 Identities=19% Similarity=0.118 Sum_probs=75.7
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
.++.+|||+ ||+|..+..++... .+|+++|+++++++.|+ .+.....+++++.+|.....+ .++||+|+++...
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP-GGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC-CCceeEEEECCCc
Confidence 577899999 99999999999876 68999999999999996 332234579999999866543 4689999997433
Q ss_pred CC------ch--------------------------HHHHhccccCcEEEEEecCC
Q psy8015 100 PR------YP--------------------------EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 100 ~~------~p--------------------------~~l~~~LkpgG~lvi~~~~~ 123 (165)
.. ++ +.+.+.|+|||++++.++..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~ 241 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD 241 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch
Confidence 10 11 12348999999999988653
No 111
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.28 E-value=2.7e-11 Score=97.28 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=74.0
Q ss_pred CCCeEEEE-ccccH----HHHHHhccC-------CcEEEEeCCHHHHHhcccccC------C------------------
Q psy8015 26 KRLDCLAL-TSNTK----QSTTLPTFI-------PNSFNINVYYYLSGGPLSSTI------D------------------ 69 (165)
Q Consensus 26 ~~~~vLei-~GsG~----~t~~la~~~-------~~V~aiD~~~~~~~~A~~~~~------~------------------ 69 (165)
++.+|||+ ||||. +|..++... .+|+|+|+|++|++.|+.... +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999 99995 555565532 379999999999999972110 1
Q ss_pred -----CCCeEEEEccCCCCCCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEecCC
Q psy8015 70 -----PDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 70 -----~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~~~ 123 (165)
.++|+|.++|..+..++.++||+|++.....+++ ..+.+.|+|||.|++-..+.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 1369999999987555567899999987776553 35789999999999866543
No 112
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.26 E-value=6.5e-11 Score=92.02 Aligned_cols=88 Identities=14% Similarity=0.047 Sum_probs=68.2
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--------CCCCCccE
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--------GDNGPYDA 92 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--------~~~~~fD~ 92 (165)
+++++|||+ ||+|.++..+++.. ++|+++|+++ |. ...+++++++|+.+.. ...++||+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------PIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------CCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 678999999 99999999998875 5899999998 21 2357999999987631 22468999
Q ss_pred EEEcCCCCC-----------------chHHHHhccccCcEEEEEec
Q psy8015 93 IHVGAAYPR-----------------YPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 93 I~i~~~~~~-----------------~p~~l~~~LkpgG~lvi~~~ 121 (165)
|+++.+... ..+.+.+.|||||++++-+-
T Consensus 121 V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 121 VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999765421 12457899999999999554
No 113
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=3.1e-11 Score=97.31 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=84.1
Q ss_pred HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCc
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPY 90 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~f 90 (165)
..++.| .++||++|||| ||=|.++..+|+.. .+|+++++|++..+.++ +++.|++ ||+++..|-.+. . ++|
T Consensus 63 ~~~~kl-~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-~--e~f 138 (283)
T COG2230 63 LILEKL-GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-E--EPF 138 (283)
T ss_pred HHHHhc-CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-c--ccc
Confidence 344444 34899999999 99999999999986 79999999999999996 6778887 899999996543 2 359
Q ss_pred cEEEEcCCCCCc-----h---HHHHhccccCcEEEEEecCC
Q psy8015 91 DAIHVGAAYPRY-----P---EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 91 D~I~i~~~~~~~-----p---~~l~~~LkpgG~lvi~~~~~ 123 (165)
|.|+.-+..+++ + +.+.+.|+|||+++.-....
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 999998877643 3 36789999999999866543
No 114
>PRK00811 spermidine synthase; Provisional
Probab=99.26 E-value=2.7e-11 Score=98.17 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=76.0
Q ss_pred CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccC-----CCCCeEEEEccCCCCCC-CCCCccEE
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTI-----DPDHDYDLIADGRASFG-DNGPYDAI 93 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~-----~~~nV~~~~gD~~~~~~-~~~~fD~I 93 (165)
...++||+| ||+|..+..+.+. ..+|+++|+|+++++.|+ +... .-++++++.+|+.+-+. ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 467899999 9999999988775 468999999999999997 3322 23579999999876333 24689999
Q ss_pred EEcCCCCCch----------HHHHhccccCcEEEEEec
Q psy8015 94 HVGAAYPRYP----------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 94 ~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~ 121 (165)
+++...+.-| +.+.+.|+|||++++..+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9987554322 356899999999998654
No 115
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.25 E-value=7.7e-11 Score=89.75 Aligned_cols=95 Identities=13% Similarity=-0.011 Sum_probs=69.2
Q ss_pred HHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--------CC
Q psy8015 19 TYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--------GD 86 (165)
Q Consensus 19 ~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--------~~ 86 (165)
+....+.++++|||+ ||+|.++..+++.. ++|+++|+++.+ ...+++++.+|..+.. .+
T Consensus 25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred HHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhC
Confidence 334444789999999 99999999888764 369999999965 2357889999976421 12
Q ss_pred CCCccEEEEcCCCC-----C------------chHHHHhccccCcEEEEEecC
Q psy8015 87 NGPYDAIHVGAAYP-----R------------YPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 87 ~~~fD~I~i~~~~~-----~------------~p~~l~~~LkpgG~lvi~~~~ 122 (165)
.+.||+|+++++.+ . ....+.+.|+|||++++....
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 45799999976422 1 123468899999999996543
No 116
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.24 E-value=9.1e-11 Score=91.34 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=68.8
Q ss_pred HHHHHHHHHhc--CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCC
Q psy8015 13 AVAKYVTYLSG--HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGD 86 (165)
Q Consensus 13 ~~~~~l~~l~~--~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~ 86 (165)
....+++++.. ..++.+|||+ ||+|+++..+++...+|+++|++++|++.|+ ....+. +++++..+|... .
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~ 124 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---L 124 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---c
Confidence 34456666643 3578899999 9999999999988888999999999999996 444444 479999999432 2
Q ss_pred CCCccEEEEcCCCCCch
Q psy8015 87 NGPYDAIHVGAAYPRYP 103 (165)
Q Consensus 87 ~~~fD~I~i~~~~~~~p 103 (165)
.++||+|++....++++
T Consensus 125 ~~~fD~v~~~~~l~~~~ 141 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYP 141 (230)
T ss_pred cCCcCEEEEcchhhcCC
Confidence 46899999988876654
No 117
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.24 E-value=2.3e-12 Score=107.40 Aligned_cols=137 Identities=13% Similarity=0.039 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC----
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG---- 85 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~---- 85 (165)
++...++++.. .++ ++||+ ||+|.+|..||+.+++|+|+|.++++++.|+ ++..+++|++|+.+++.+...
T Consensus 185 l~~~~~~~l~~-~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~ 262 (352)
T PF05958_consen 185 LYEQALEWLDL-SKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAK 262 (352)
T ss_dssp HHHHHHHHCTT--TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCC
T ss_pred HHHHHHHHhhc-CCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHh
Confidence 34455566542 344 89999 9999999999999999999999999999996 666788999999987643211
Q ss_pred ------------CCCCccEEEEcCCCCCchHHHHhcc-ccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEee
Q psy8015 86 ------------DNGPYDAIHVGAAYPRYPEIFIHHL-KSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGL 151 (165)
Q Consensus 86 ------------~~~~fD~I~i~~~~~~~p~~l~~~L-kpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~p 151 (165)
....+|+|+++....-+.+.+.+.+ ++.=.+++.|++.+. ..+..+. . +|....+..+++.|
T Consensus 263 ~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tlaRDl~~L~---~-~y~~~~v~~~DmFP 338 (352)
T PF05958_consen 263 AREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATLARDLKILK---E-GYKLEKVQPVDMFP 338 (352)
T ss_dssp S-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHHHHHHHHHH---C-CEEEEEEEEE-SST
T ss_pred hHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHHHHHHHHHh---h-cCEEEEEEEeecCC
Confidence 1126899999977665544332222 445677778877653 3444442 2 49999999999999
Q ss_pred eccC
Q psy8015 152 LYDV 155 (165)
Q Consensus 152 l~~~ 155 (165)
.+.+
T Consensus 339 ~T~H 342 (352)
T PF05958_consen 339 QTHH 342 (352)
T ss_dssp TSS-
T ss_pred CCCc
Confidence 8764
No 118
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.24 E-value=5e-11 Score=98.19 Aligned_cols=118 Identities=18% Similarity=0.105 Sum_probs=97.1
Q ss_pred EEecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEc-c
Q psy8015 4 VFVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIA-D 79 (165)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g-D 79 (165)
+|.++|.+--.||.+--|...++|+.|||- ||||.+...+..++.+|++.|++.+|++-|+ ++..++++..+... |
T Consensus 175 f~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~D 254 (347)
T COG1041 175 FFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLD 254 (347)
T ss_pred ccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecc
Confidence 467788888888888888777999999999 9999999999998999999999999999996 77777778777766 9
Q ss_pred CCCCCCCCCCccEEEEcCCCCC---------------chHHHHhccccCcEEEEEec
Q psy8015 80 GRASFGDNGPYDAIHVGAAYPR---------------YPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 80 ~~~~~~~~~~fD~I~i~~~~~~---------------~p~~l~~~LkpgG~lvi~~~ 121 (165)
+.+...+...||+|..+..... ..+.+.+.|++||+++++..
T Consensus 255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 8774333346999999865431 11357899999999999887
No 119
>PRK06922 hypothetical protein; Provisional
Probab=99.23 E-value=5.8e-11 Score=104.92 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=74.4
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC--CCCCCccEEEEcC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF--GDNGPYDAIHVGA 97 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~--~~~~~fD~I~i~~ 97 (165)
.++.+|||+ ||+|.++..+++.. .+|+++|+|+.|++.|+ ....+ .+++++++|+.+.. .+.++||+|+++.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 568999999 99999998888754 59999999999999996 22223 46889999986532 2357899999876
Q ss_pred CCCCc-------------------hHHHHhccccCcEEEEEec
Q psy8015 98 AYPRY-------------------PEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 98 ~~~~~-------------------p~~l~~~LkpgG~lvi~~~ 121 (165)
..+++ ..++.+.|||||++++..+
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 55432 1356899999999999754
No 120
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.22 E-value=9.4e-11 Score=96.37 Aligned_cols=89 Identities=11% Similarity=0.038 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccC-----CCCCeEEEEccCCC
Q psy8015 13 AVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTI-----DPDHDYDLIADGRA 82 (165)
Q Consensus 13 ~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~-----~~~nV~~~~gD~~~ 82 (165)
.+.++++++... .++.+|||+ ||+|.++..+++...+|+++|+|++|++.|+ .+.. +..++++..+|...
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 456677777532 267899999 9999999999998889999999999999996 3322 23468899999743
Q ss_pred CCCCCCCccEEEEcCCCCCchH
Q psy8015 83 SFGDNGPYDAIHVGAAYPRYPE 104 (165)
Q Consensus 83 ~~~~~~~fD~I~i~~~~~~~p~ 104 (165)
. .++||+|++.....++|+
T Consensus 209 l---~~~fD~Vv~~~vL~H~p~ 227 (315)
T PLN02585 209 L---SGKYDTVTCLDVLIHYPQ 227 (315)
T ss_pred c---CCCcCEEEEcCEEEecCH
Confidence 2 368999999888777764
No 121
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.20 E-value=3.2e-11 Score=102.00 Aligned_cols=104 Identities=9% Similarity=-0.083 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCC--CCeEEEEccCCCCCC--
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDP--DHDYDLIADGRASFG-- 85 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~--~nV~~~~gD~~~~~~-- 85 (165)
...++..+ .++++|||+ ||||.++..++.. ..+|+++|+|+.+++.|+ ++..++ ++++++++|+.+.+.
T Consensus 211 ~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~ 287 (396)
T PRK15128 211 SRLATRRY---VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTY 287 (396)
T ss_pred HHHHHHHh---cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHH
Confidence 33444444 468999999 9999998765543 458999999999999996 555565 379999999876432
Q ss_pred --CCCCccEEEEcCCCCC-----ch----------HHHHhccccCcEEEEEe
Q psy8015 86 --DNGPYDAIHVGAAYPR-----YP----------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 86 --~~~~fD~I~i~~~~~~-----~p----------~~l~~~LkpgG~lvi~~ 120 (165)
..++||.|+++...-. +. ....+.|+|||.++...
T Consensus 288 ~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 288 RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 2358999999865411 11 13468999999999743
No 122
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.20 E-value=1.1e-10 Score=89.62 Aligned_cols=103 Identities=15% Similarity=-0.002 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPY 90 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~f 90 (165)
+..+++.+. ..+..++||+ ||.|-.|..||+.+-.|+|+|.|+..++.++ .++.+++ |+....|..+... ...|
T Consensus 19 hs~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~-~~~y 95 (192)
T PF03848_consen 19 HSEVLEAVP-LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDF-PEEY 95 (192)
T ss_dssp -HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS--TTTE
T ss_pred cHHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhccc-cCCc
Confidence 334555553 3567899999 9999999999999999999999999999875 3444554 9999999755322 3689
Q ss_pred cEEEEcCCCCCch--------HHHHhccccCcEEEEE
Q psy8015 91 DAIHVGAAYPRYP--------EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 91 D~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~ 119 (165)
|.|+.......++ +.+.+.++|||..++.
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 9999876555433 3567889999998884
No 123
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.20 E-value=1.9e-10 Score=97.36 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=73.9
Q ss_pred CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC-CCCCCCccEEEEcCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS-FGDNGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~-~~~~~~fD~I~i~~~ 98 (165)
.++.+|||+ ||||.++..+++. ..+|+++|+|+++++.|+ .+..+. +++++++|..+. ++..++||+|+++..
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccCCCccEEEECCC
Confidence 456799999 9999999988865 358999999999999996 444454 799999998653 233458999999764
Q ss_pred CC-----C-c-------h------------------HHHHhccccCcEEEEEecCC
Q psy8015 99 YP-----R-Y-------P------------------EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 99 ~~-----~-~-------p------------------~~l~~~LkpgG~lvi~~~~~ 123 (165)
.- . . | +.+.+.|+|||.+++.++..
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD 384 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc
Confidence 31 0 0 1 12347899999999877653
No 124
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.19 E-value=2.5e-10 Score=93.19 Aligned_cols=103 Identities=12% Similarity=-0.031 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCC
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDN 87 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~ 87 (165)
...+++.+. .+++.+|||| ||+|.++..+++.. .+++++|. +.+++.|+ .++.|+. +++++.+|..+...
T Consensus 138 ~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-- 213 (306)
T TIGR02716 138 IQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-- 213 (306)
T ss_pred HHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--
Confidence 344555553 3678999999 99999999999876 47999997 78999885 5556664 59999999875322
Q ss_pred CCccEEEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015 88 GPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 88 ~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~ 120 (165)
..+|+|++....+..+ .++.+.|+|||++++..
T Consensus 214 ~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 214 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2479999887666443 35789999999999874
No 125
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.19 E-value=1.1e-10 Score=92.54 Aligned_cols=107 Identities=16% Similarity=0.084 Sum_probs=80.1
Q ss_pred HHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCC--CCC
Q psy8015 17 YVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFG--DNG 88 (165)
Q Consensus 17 ~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~--~~~ 88 (165)
++..........+|||+ ||+|..+..+|+.. .+++++|+++++++.|+ .+..++ ++++++++|..+..+ ...
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~ 114 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA 114 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence 34444334568999999 99999999999885 58999999999999996 444444 469999999865332 235
Q ss_pred CccEEEEcCCCCCch--------------------H----HHHhccccCcEEEEEecCC
Q psy8015 89 PYDAIHVGAAYPRYP--------------------E----IFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 89 ~fD~I~i~~~~~~~p--------------------~----~l~~~LkpgG~lvi~~~~~ 123 (165)
+||.|+++..+-... + ...+.|||||++.+++...
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 799999986543111 1 2468999999999997654
No 126
>PRK06202 hypothetical protein; Provisional
Probab=99.18 E-value=2e-10 Score=90.17 Aligned_cols=90 Identities=7% Similarity=-0.031 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD 86 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~ 86 (165)
....+.......++.+|||+ ||+|.++..|++.. .+|+++|++++|++.|+.+. ...++++..+++......
T Consensus 48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~~~l~~~ 126 (232)
T PRK06202 48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-RRPGVTFRQAVSDELVAE 126 (232)
T ss_pred HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-ccCCCeEEEEeccccccc
Confidence 33343333233567899999 99999998887642 38999999999999997332 234577777765432223
Q ss_pred CCCccEEEEcCCCCCchH
Q psy8015 87 NGPYDAIHVGAAYPRYPE 104 (165)
Q Consensus 87 ~~~fD~I~i~~~~~~~p~ 104 (165)
.++||+|+++...+++++
T Consensus 127 ~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 127 GERFDVVTSNHFLHHLDD 144 (232)
T ss_pred CCCccEEEECCeeecCCh
Confidence 578999999999888764
No 127
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.18 E-value=2.6e-10 Score=88.51 Aligned_cols=96 Identities=14% Similarity=-0.010 Sum_probs=75.4
Q ss_pred CCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYPR 101 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~~ 101 (165)
++.+|||+ ||+|+++..+++...+|+++|.++++++.++ +...+..++++..+|+.+...+ .++||+|++....++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 47899999 9999999999887778999999999999886 3344444789999987653322 368999999866554
Q ss_pred ch------HHHHhccccCcEEEEEec
Q psy8015 102 YP------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 102 ~p------~~l~~~LkpgG~lvi~~~ 121 (165)
.. +.+.+.|+|||.+++...
T Consensus 125 ~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 125 VPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 32 456789999999887653
No 128
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.18 E-value=6.9e-11 Score=106.37 Aligned_cols=99 Identities=14% Similarity=0.033 Sum_probs=76.4
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC--CeEEEEccCCCCCCC-CCCccEEEEcC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD--HDYDLIADGRASFGD-NGPYDAIHVGA 97 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~--nV~~~~gD~~~~~~~-~~~fD~I~i~~ 97 (165)
.++++|||+ ||||.++..++... .+|+++|+|+.+++.|+ ++..+++ +++++++|+.+.+.. ..+||+|+++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 468999999 99999999999864 47999999999999996 5545554 799999998653321 35899999986
Q ss_pred CCC-------C----------chHHHHhccccCcEEEEEecCC
Q psy8015 98 AYP-------R----------YPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 98 ~~~-------~----------~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
..- . +...+.+.|+|||.+++.....
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 431 1 1124578999999998876544
No 129
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.1e-10 Score=92.94 Aligned_cols=93 Identities=20% Similarity=0.187 Sum_probs=74.9
Q ss_pred eEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC-C-C
Q psy8015 29 DCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY-P-R 101 (165)
Q Consensus 29 ~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~-~-~ 101 (165)
+|||+ ||||..+..++.... +|+++|+|+++++.|+ .+.+|+.|+.++.+|....... +||.|+++..+ + .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~--~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRG--KFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCC--ceeEEEeCCCCCCCc
Confidence 79999 999999999999886 8999999999999996 6666777788888887766553 89999998543 1 1
Q ss_pred ----ch-------------------------HHHHhccccCcEEEEEecCC
Q psy8015 102 ----YP-------------------------EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 102 ----~p-------------------------~~l~~~LkpgG~lvi~~~~~ 123 (165)
.| +...+.|+|||.+++-++..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~ 241 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT 241 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC
Confidence 11 02468999999999998843
No 130
>KOG1663|consensus
Probab=99.17 E-value=7.2e-11 Score=92.05 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCC
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRA 82 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~ 82 (165)
++...+.+++.+...-..+++||| +=|||.+...|... |+|+++|++++.++.+. .+..|.. .|++++|++.+
T Consensus 57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence 444556666666555578999999 99999998888765 79999999999999995 5666765 59999999875
Q ss_pred CCC------CCCCccEEEEcCCCCCc---hHHHHhccccCcEEEEE
Q psy8015 83 SFG------DNGPYDAIHVGAAYPRY---PEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 83 ~~~------~~~~fD~I~i~~~~~~~---p~~l~~~LkpgG~lvi~ 119 (165)
.++ +.++||.+|+++...++ -+++.++||+||.|++.
T Consensus 137 sLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence 443 24799999999988754 46889999999999984
No 131
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.17 E-value=8.1e-11 Score=92.15 Aligned_cols=100 Identities=15% Similarity=0.063 Sum_probs=79.0
Q ss_pred CCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhccccc----CCCCCeEEEEccCCCCCC--CCCCccEEEEc
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSST----IDPDHDYDLIADGRASFG--DNGPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~----~~~~nV~~~~gD~~~~~~--~~~~fD~I~i~ 96 (165)
+.|.+|||. +|-||.|++..+... +|+++|.||..++.|.++- +--.+++++.||+.+... ++.+||+|+-+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 569999999 999999999888776 9999999999999996332 212268999999976332 35789999887
Q ss_pred CCCC-----Cch----HHHHhccccCcEEEEEecCCC
Q psy8015 97 AAYP-----RYP----EIFIHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 97 ~~~~-----~~p----~~l~~~LkpgG~lvi~~~~~~ 124 (165)
...- -+. .++++.|||||+|+=.+++++
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 5431 122 468999999999999998765
No 132
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.17 E-value=2.9e-10 Score=89.01 Aligned_cols=96 Identities=9% Similarity=-0.015 Sum_probs=75.4
Q ss_pred CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC-CCCCCccEEEEcCCCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF-GDNGPYDAIHVGAAYP 100 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~-~~~~~fD~I~i~~~~~ 100 (165)
.++.+|||+ ||+|.++..+++...+|+++|.++++++.|+ ....+. +++++.+|..... ...++||+|++....+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 578999999 9999999999987778999999999999886 333343 6788888875432 1346899999987666
Q ss_pred Cch------HHHHhccccCcEEEEEec
Q psy8015 101 RYP------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 101 ~~p------~~l~~~LkpgG~lvi~~~ 121 (165)
+.+ +.+.+.|+|||++++...
T Consensus 126 ~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 126 HVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 543 356789999999998653
No 133
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.15 E-value=5.4e-10 Score=87.86 Aligned_cols=111 Identities=12% Similarity=-0.003 Sum_probs=84.5
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccc--------------cCCCCCeE
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSS--------------TIDPDHDY 74 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~--------------~~~~~nV~ 74 (165)
+.....+....+.. .++.+||.. ||.|+-+.+||..+.+|+++|+|+..++.+..+ ...-.+++
T Consensus 28 pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 28 PNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 44444445555532 467899999 999999999999999999999999999986311 11124799
Q ss_pred EEEccCCCCCC---CCCCccEEEEcCCCCCchH--------HHHhccccCcEEEEEec
Q psy8015 75 DLIADGRASFG---DNGPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 75 ~~~gD~~~~~~---~~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~~ 121 (165)
+.++|..+.-+ ..++||.|+-.+.+..+|+ .+.+.|+|||++++..-
T Consensus 107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 107 IYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred EEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 99999886422 1368999999888877764 47889999999988753
No 134
>KOG1271|consensus
Probab=99.14 E-value=3e-10 Score=86.00 Aligned_cols=119 Identities=14% Similarity=-0.016 Sum_probs=81.1
Q ss_pred EEEecCCchHHHHHHHHHHhc--C-CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCC-e
Q psy8015 3 IVFVSGSVSGAVAKYVTYLSG--H-SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDH-D 73 (165)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~l~~--~-~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~n-V 73 (165)
+.|++.+..+.+..++..... + +...+|||+ ||.|.+-..|++-. ++.+++|.++++++.|+ .++.+.+| |
T Consensus 41 vWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I 120 (227)
T KOG1271|consen 41 VWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEI 120 (227)
T ss_pred eecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcce
Confidence 356655444444433333320 0 234599999 99999999998764 67999999999999996 55667887 9
Q ss_pred EEEEccCCCCCCCCCCccEEE---------EcCCCC-----CchHHHHhccccCcEEEEEec
Q psy8015 74 YDLIADGRASFGDNGPYDAIH---------VGAAYP-----RYPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 74 ~~~~gD~~~~~~~~~~fD~I~---------i~~~~~-----~~p~~l~~~LkpgG~lvi~~~ 121 (165)
+|.+.|...+-...++||+|+ +++..+ -+-+.+.+.|+|||+++|.-.
T Consensus 121 ~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 121 RFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 999999876432334555554 332221 133567899999999999644
No 135
>PLN02366 spermidine synthase
Probab=99.14 E-value=5.9e-10 Score=91.44 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=75.3
Q ss_pred CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--ccc----CCCCCeEEEEccCCCCCC--CCCCccEE
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SST----IDPDHDYDLIADGRASFG--DNGPYDAI 93 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~----~~~~nV~~~~gD~~~~~~--~~~~fD~I 93 (165)
.+.++||+| +|.|..+..+++. +.+|+.+|+|+++++.|| +.. +.-++++++.+|+..-+. +.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 567999999 9999999999876 368999999999999996 332 223579999999864332 13689999
Q ss_pred EEcCCCCCch----------HHHHhccccCcEEEEEec
Q psy8015 94 HVGAAYPRYP----------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 94 ~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~ 121 (165)
+++...+.-| +.+.+.|+|||+++...+
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9987665322 357899999999987543
No 136
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.13 E-value=3.6e-10 Score=97.36 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=79.7
Q ss_pred CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC-CCCCCccEEEEc
Q psy8015 24 HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF-GDNGPYDAIHVG 96 (165)
Q Consensus 24 ~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~-~~~~~fD~I~i~ 96 (165)
.+|+++|||+ +|.|.-|..+|.+. +.|+|.|+++..++..+ ++++|+.||.+...|+.... ...+.||.|+++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 4799999999 99999999999876 68999999999999885 88899999999999986421 113579999999
Q ss_pred CCCC------CchH----------------------HHHhccccCcEEEEEecC
Q psy8015 97 AAYP------RYPE----------------------IFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 97 ~~~~------~~p~----------------------~l~~~LkpgG~lvi~~~~ 122 (165)
+.+. .-|+ ...+.|||||+||...-+
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 7664 2222 246899999999887543
No 137
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.12 E-value=4.4e-10 Score=92.93 Aligned_cols=113 Identities=14% Similarity=0.087 Sum_probs=90.8
Q ss_pred EecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCc-EEEEeCCHHHHHhcc--cccCCCCC-eEEEEcc
Q psy8015 5 FVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPN-SFNINVYYYLSGGPL--SSTIDPDH-DYDLIAD 79 (165)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~-V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD 79 (165)
|=|+.-+...+|+.++. .+|++|+|. +|.|++|..+|+.... |+|+|+||+.++..+ ++..+..+ |+.++||
T Consensus 170 ~Fsprl~~ER~Rva~~v---~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD 246 (341)
T COG2520 170 YFSPRLSTERARVAELV---KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGD 246 (341)
T ss_pred EECCCchHHHHHHHhhh---cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEecc
Confidence 44555677788888876 469999999 9999999999998865 999999999999985 55556666 9999999
Q ss_pred CCCCCCCCCCccEEEEcCCC--CCchHHHHhccccCcEEEEEe
Q psy8015 80 GRASFGDNGPYDAIHVGAAY--PRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 80 ~~~~~~~~~~fD~I~i~~~~--~~~p~~l~~~LkpgG~lvi~~ 120 (165)
+....+..+.||.|+++... +++-+...+.+++||.+-.-.
T Consensus 247 ~rev~~~~~~aDrIim~~p~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 247 AREVAPELGVADRIIMGLPKSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred HHHhhhccccCCEEEeCCCCcchhhHHHHHHHhhcCcEEEEEe
Confidence 98755555889999998654 344455668999999988754
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=99.12 E-value=3.4e-10 Score=94.28 Aligned_cols=98 Identities=10% Similarity=0.027 Sum_probs=75.1
Q ss_pred CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhccc----c-----cCCCCCeEEEEccCCCCCC-CCCCc
Q psy8015 24 HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLS----S-----TIDPDHDYDLIADGRASFG-DNGPY 90 (165)
Q Consensus 24 ~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~----~-----~~~~~nV~~~~gD~~~~~~-~~~~f 90 (165)
+...++||++ +|+|+.+..+.+.. .+|+++|+|+++++.|+. . .++-++++++.+|+.+-+. ..+.|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3566899999 99999988887753 699999999999999972 1 1234579999999976332 24689
Q ss_pred cEEEEcCCCCCc-----------hHHHHhccccCcEEEEEec
Q psy8015 91 DAIHVGAAYPRY-----------PEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 91 D~I~i~~~~~~~-----------p~~l~~~LkpgG~lvi~~~ 121 (165)
|+|+++...+.- -+.+.+.|+|||++++..+
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 999999654421 1357899999999988654
No 139
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.11 E-value=8.5e-10 Score=90.11 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=68.9
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCCCCC-----ccE
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGDNGP-----YDA 92 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~~~~-----fD~ 92 (165)
.++.+|||+ ||||..|..|++.. .+|+++|+|++|++.|+ ++... ..++.++++|..+..+.... ..+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 467899999 99999999888764 68999999999999985 33211 12477889998654321122 234
Q ss_pred EEEcCCCCCch--------HHHHhccccCcEEEEEec
Q psy8015 93 IHVGAAYPRYP--------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 93 I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~ 121 (165)
++++....+++ ..+.+.|+|||++++.+.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 44445555543 246899999999998664
No 140
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.10 E-value=5.3e-10 Score=90.79 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc-c-ccCCCCCeEEEEccCCCCCCCCCC
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL-S-STIDPDHDYDLIADGRASFGDNGP 89 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~-~-~~~~~~nV~~~~gD~~~~~~~~~~ 89 (165)
+.++...+.. -.|++|||| ||+||.+-.|+... ..|+++|.++...-+.+ + +-+|.++..+....+.+.++..+.
T Consensus 104 W~rl~p~l~~-L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 104 WDRLLPHLPD-LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHHHhhhCC-cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 4567777754 479999999 99999998888776 57999999999887765 2 233444444444445555555789
Q ss_pred ccEEEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015 90 YDAIHVGAAYPRYP------EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 90 fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~ 119 (165)
||.||+-+.+-|.. ..+.+.|+|||.||+-
T Consensus 183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 99999999876543 3678899999999974
No 141
>PRK03612 spermidine synthase; Provisional
Probab=99.09 E-value=6.1e-10 Score=97.25 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=75.5
Q ss_pred CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhccc----cc-----CCCCCeEEEEccCCCCCC-CCCCc
Q psy8015 24 HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLS----ST-----IDPDHDYDLIADGRASFG-DNGPY 90 (165)
Q Consensus 24 ~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~----~~-----~~~~nV~~~~gD~~~~~~-~~~~f 90 (165)
+.+.++|||| ||+|..+..+.+.. .+|+.+|+|+++++.||. .. ++-++++++.+|+.+-+. ..++|
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 3567899999 99999998888753 699999999999999963 11 223579999999876332 23689
Q ss_pred cEEEEcCCCCCch-----------HHHHhccccCcEEEEEec
Q psy8015 91 DAIHVGAAYPRYP-----------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 91 D~I~i~~~~~~~p-----------~~l~~~LkpgG~lvi~~~ 121 (165)
|+|+++...+..+ +.+.+.|||||++++...
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9999986654322 356899999999998653
No 142
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.08 E-value=7.3e-10 Score=90.35 Aligned_cols=97 Identities=9% Similarity=0.001 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCC
Q psy8015 11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGD 86 (165)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~ 86 (165)
+....++++.+. ..++++|||| ||+|.+|..+++.+.+|+++|+|++|++.++ ++..+ .+|++++++|+....
T Consensus 22 ~~i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-- 98 (294)
T PTZ00338 22 PLVLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-- 98 (294)
T ss_pred HHHHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--
Confidence 456777888774 4789999999 9999999999998899999999999999996 44444 468999999997632
Q ss_pred CCCccEEEEcCCCCCchHHHHhcc
Q psy8015 87 NGPYDAIHVGAAYPRYPEIFIHHL 110 (165)
Q Consensus 87 ~~~fD~I~i~~~~~~~p~~l~~~L 110 (165)
...||.|+.+..+.--.+.+++.|
T Consensus 99 ~~~~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 99 FPYFDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred ccccCEEEecCCcccCcHHHHHHH
Confidence 246898887654432223344444
No 143
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.08 E-value=5e-10 Score=90.10 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=73.2
Q ss_pred CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccC----CCCCeEEEEccCCCCCCC-CCCccEEE
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTI----DPDHDYDLIADGRASFGD-NGPYDAIH 94 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~----~~~nV~~~~gD~~~~~~~-~~~fD~I~ 94 (165)
...++|||| ||+|.++..+.+. ..+|+++|+++++++.|+ +... ..++++++.+|+.+.+.. .++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 455699999 9999999877665 468999999999999996 3222 235689999998653322 36899999
Q ss_pred EcCCCCCch----------HHHHhccccCcEEEEEec
Q psy8015 95 VGAAYPRYP----------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 95 i~~~~~~~p----------~~l~~~LkpgG~lvi~~~ 121 (165)
++...+.-+ +.+.+.|+|||++++...
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 987643221 357899999999998744
No 144
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.08 E-value=1.9e-10 Score=88.89 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=71.8
Q ss_pred EecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhc--cCCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEc
Q psy8015 5 FVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPT--FIPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIA 78 (165)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~--~~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~g 78 (165)
|++ ..+....|+.+.. .++++|+|. ||.|+++..+|+ ...+|+|+|++|+.++..+ .+..++++ ++.+++
T Consensus 84 fs~-rl~~Er~Ri~~~v---~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~ 159 (200)
T PF02475_consen 84 FSP-RLSTERRRIANLV---KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVING 159 (200)
T ss_dssp --G-GGHHHHHHHHTC-----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES
T ss_pred Ecc-ccHHHHHHHHhcC---CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcC
Confidence 444 3455556666553 689999999 999999999998 5578999999999999885 44445554 899999
Q ss_pred cCCCCCCCCCCccEEEEcCCCC--CchHHHHhccccCcEE
Q psy8015 79 DGRASFGDNGPYDAIHVGAAYP--RYPEIFIHHLKSGGRL 116 (165)
Q Consensus 79 D~~~~~~~~~~fD~I~i~~~~~--~~p~~l~~~LkpgG~l 116 (165)
|+.+..+ ...||.|+++.... +..+.....+++||.+
T Consensus 160 D~~~~~~-~~~~drvim~lp~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 160 DAREFLP-EGKFDRVIMNLPESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp -GGG----TT-EEEEEE--TSSGGGGHHHHHHHEEEEEEE
T ss_pred CHHHhcC-ccccCEEEECChHHHHHHHHHHHHHhcCCcEE
Confidence 9976554 67899999976543 4556677899999876
No 145
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.07 E-value=7.6e-10 Score=73.53 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=72.2
Q ss_pred eEEEE-ccccHHHHHHhc-cCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCCCC--
Q psy8015 29 DCLAL-TSNTKQSTTLPT-FIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAYPR-- 101 (165)
Q Consensus 29 ~vLei-~GsG~~t~~la~-~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~~~-- 101 (165)
+++|+ ||+|..+..+++ ...+++++|.++++++.++ .+..+..+++++.+|..+... ...+||+|+++...+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 58999 999999999987 4579999999999999886 233345679999999876443 4568999999887754
Q ss_pred -c----hHHHHhccccCcEEEEE
Q psy8015 102 -Y----PEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 102 -~----p~~l~~~LkpgG~lvi~ 119 (165)
. .+.+.+.|+|||++++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 23567899999999875
No 146
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.07 E-value=5e-10 Score=94.32 Aligned_cols=97 Identities=11% Similarity=0.066 Sum_probs=75.7
Q ss_pred CCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
++.+|||+ ||+|..+..++...+ +|+++|+++++++.++ ++..+++++++.++|+...+.....||+|+++.--.
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~Gs 136 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFGS 136 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCCC
Confidence 45799999 999999999987654 8999999999999996 555677788999999865443235799999985311
Q ss_pred --CchHHHHhccccCcEEEEEecC
Q psy8015 101 --RYPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 101 --~~p~~l~~~LkpgG~lvi~~~~ 122 (165)
.+.+...+.+++||.+++...+
T Consensus 137 ~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 137 PAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred cHHHHHHHHHHhcCCCEEEEEecC
Confidence 2234546779999999998543
No 147
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.07 E-value=1.6e-09 Score=86.38 Aligned_cols=102 Identities=11% Similarity=-0.069 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCC
Q psy8015 11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGP 89 (165)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~ 89 (165)
+....++++.+. ..++++|||+ ||+|.+|..+++.+.+|+++|+|+++++.++.+....+|++++++|+.+...+ .
T Consensus 15 ~~i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~ 91 (253)
T TIGR00755 15 ESVIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--D 91 (253)
T ss_pred HHHHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--H
Confidence 345677888774 4788999999 99999999999999999999999999999862211246899999998764322 4
Q ss_pred cc---EEEEcCCCCCchHHHHhcc-ccCcE
Q psy8015 90 YD---AIHVGAAYPRYPEIFIHHL-KSGGR 115 (165)
Q Consensus 90 fD---~I~i~~~~~~~p~~l~~~L-kpgG~ 115 (165)
|| .|+.+-..+.-.+-+.++| .++..
T Consensus 92 ~d~~~~vvsNlPy~i~~~il~~ll~~~~~~ 121 (253)
T TIGR00755 92 FPKQLKVVSNLPYNISSPLIFKLLEKPKFR 121 (253)
T ss_pred cCCcceEEEcCChhhHHHHHHHHhccCCCc
Confidence 66 5555443332223344555 45544
No 148
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.06 E-value=9.8e-10 Score=95.65 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
++.+|||+ ||||.++..++... .+|+++|+|+++++.|+ .+..++. +++++.+|..+..+ .++||+|+++...
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-KQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-CCCccEEEECCCC
Confidence 35689999 99999999888653 58999999999999996 4555654 69999999865443 3589999997532
Q ss_pred C--------------Cch------------------HHHHhccccCcEEEEEecC
Q psy8015 100 P--------------RYP------------------EIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 100 ~--------------~~p------------------~~l~~~LkpgG~lvi~~~~ 122 (165)
- +-| +.+.+.|+|||++++.++.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 1 001 1245799999999997764
No 149
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.05 E-value=1.2e-09 Score=83.48 Aligned_cols=99 Identities=9% Similarity=0.071 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC--CCCCc
Q psy8015 15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG--DNGPY 90 (165)
Q Consensus 15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~--~~~~f 90 (165)
+.+.+.+ .++.+|||+ ||+|.++..+++.. ..++++|+++++++.|+. .+++++.+|+.+.++ +.++|
T Consensus 5 ~~i~~~i---~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-----~~~~~~~~d~~~~l~~~~~~sf 76 (194)
T TIGR02081 5 ESILNLI---PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-----RGVNVIQGDLDEGLEAFPDKSF 76 (194)
T ss_pred HHHHHhc---CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-----cCCeEEEEEhhhcccccCCCCc
Confidence 3444444 467899999 99999999887643 478999999999998853 257888999865332 34689
Q ss_pred cEEEEcCCCCCchH---HHHhccccCcEEEEEec
Q psy8015 91 DAIHVGAAYPRYPE---IFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 91 D~I~i~~~~~~~p~---~l~~~LkpgG~lvi~~~ 121 (165)
|+|++....+++++ .+.+.++++|..++.++
T Consensus 77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p 110 (194)
T TIGR02081 77 DYVILSQTLQATRNPEEILDEMLRVGRHAIVSFP 110 (194)
T ss_pred CEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcC
Confidence 99999988877643 35567778887777654
No 150
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.03 E-value=3.5e-09 Score=84.67 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPY 90 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~f 90 (165)
....++++.+. ..++++|||| ||+|.+|..+++...+|+++|+|++|++.++.+....+|++++++|+.+.. ...|
T Consensus 16 ~~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~--~~~~ 92 (258)
T PRK14896 16 RVVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD--LPEF 92 (258)
T ss_pred HHHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC--chhc
Confidence 45567777664 4788999999 999999999999988999999999999999622112568999999997632 2358
Q ss_pred cEEEEcCCCC
Q psy8015 91 DAIHVGAAYP 100 (165)
Q Consensus 91 D~I~i~~~~~ 100 (165)
|.|+.+....
T Consensus 93 d~Vv~NlPy~ 102 (258)
T PRK14896 93 NKVVSNLPYQ 102 (258)
T ss_pred eEEEEcCCcc
Confidence 9888865554
No 151
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.03 E-value=2.6e-09 Score=81.82 Aligned_cols=107 Identities=6% Similarity=-0.085 Sum_probs=76.5
Q ss_pred HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCC---CC
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFG---DN 87 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~---~~ 87 (165)
.+..++...-++.+|||+ ||||.++..++..+ .+|+++|.++++++.++ ++..+.. +++++.+|+...+. ..
T Consensus 39 a~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~ 118 (189)
T TIGR00095 39 LFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK 118 (189)
T ss_pred HHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc
Confidence 344444322468999999 99999999998765 58999999999999985 5556664 69999999854221 12
Q ss_pred -CCccEEEEcCCCCC-chHH----H--HhccccCcEEEEEecC
Q psy8015 88 -GPYDAIHVGAAYPR-YPEI----F--IHHLKSGGRLVIPIGD 122 (165)
Q Consensus 88 -~~fD~I~i~~~~~~-~p~~----l--~~~LkpgG~lvi~~~~ 122 (165)
..||+||.+..... ..+. + ..+|+++|.+|+-...
T Consensus 119 ~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 119 PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 24899999877642 2222 2 2468888988876543
No 152
>KOG1541|consensus
Probab=99.01 E-value=2.5e-09 Score=83.25 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=84.0
Q ss_pred chHHHHHHHHHHhcCCC--CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC
Q psy8015 10 VSGAVAKYVTYLSGHSK--RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD 86 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~--~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~ 86 (165)
|-.+.++-+++|.. .. ..-+||| ||||-.+..|..-.+..+++|+|+.|++.|..++.. -.++.+|--+++|.
T Consensus 33 Q~em~eRaLELLal-p~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~Glpf 108 (270)
T KOG1541|consen 33 QAEMAERALELLAL-PGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE---GDLILCDMGEGLPF 108 (270)
T ss_pred hHHHHHHHHHHhhC-CCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCCCC
Confidence 45567788888864 33 5679999 999999999998888999999999999999643222 35778887676653
Q ss_pred -CCCccEEEEcCCCC---------CchH--------HHHhccccCcEEEEEecCC
Q psy8015 87 -NGPYDAIHVGAAYP---------RYPE--------IFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 87 -~~~fD~I~i~~~~~---------~~p~--------~l~~~LkpgG~lvi~~~~~ 123 (165)
.++||.+++-.+.. +.|. .+...|++|+|.|+-.-+.
T Consensus 109 rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 109 RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 58999998865553 3343 3678999999999876443
No 153
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=3.7e-09 Score=88.34 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC----cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP----NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA 82 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~----~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~ 82 (165)
+++..+.+...+...+||++|||. ++.|.=|+++|.+.. .|+|+|+++..++..+ ++++|..|+.+++.|+..
T Consensus 140 vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~ 219 (355)
T COG0144 140 VQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARR 219 (355)
T ss_pred EcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccc
Confidence 334444455555556899999999 999999999999874 3799999999999875 889999999999988753
Q ss_pred ---CCCCCCCccEEEEcCCCCC---c---hH----------------------HHHhccccCcEEEEEec
Q psy8015 83 ---SFGDNGPYDAIHVGAAYPR---Y---PE----------------------IFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 83 ---~~~~~~~fD~I~i~~~~~~---~---p~----------------------~l~~~LkpgG~lvi~~~ 121 (165)
.++..++||.|++++.+.- + |+ ...+.|||||+||...-
T Consensus 220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 2233346999999976641 1 21 24689999999999754
No 154
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.00 E-value=2.1e-10 Score=87.51 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=79.3
Q ss_pred chHHHHHHHHHHhcC-CCCCeEEEE-ccccHHHHH-HhccCCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCC
Q psy8015 10 VSGAVAKYVTYLSGH-SKRLDCLAL-TSNTKQSTT-LPTFIPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRAS 83 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~-la~~~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~ 83 (165)
-+..-..+..+|... -++.+|||+ +|||.++.+ |++-+.+|+.+|.|++.++..+ ++.++..+ ++++.+|+...
T Consensus 25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence 345556677777543 379999999 999999974 5566789999999999999885 67777765 99999997543
Q ss_pred CC----CCCCccEEEEcCCCCCc---hH---HHH--hccccCcEEEEEecCC
Q psy8015 84 FG----DNGPYDAIHVGAAYPRY---PE---IFI--HHLKSGGRLVIPIGDT 123 (165)
Q Consensus 84 ~~----~~~~fD~I~i~~~~~~~---p~---~l~--~~LkpgG~lvi~~~~~ 123 (165)
+. ...+||+||++..+..- ++ .+. .+|+++|.+++-+...
T Consensus 105 l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 31 24789999999887633 22 233 6889999999987544
No 155
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.00 E-value=2.4e-09 Score=86.24 Aligned_cols=85 Identities=8% Similarity=-0.100 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPY 90 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~f 90 (165)
....++++++. ..++++|||| ||+|.+|..+++.+.+|+++|+|++|++.++.+..+ +|++++++|+.+...+.-.+
T Consensus 29 ~i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 29 NILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCCHHHcCc
Confidence 45667778774 4788999999 999999999999888999999999999999632112 68999999987642221114
Q ss_pred cEEEEcCC
Q psy8015 91 DAIHVGAA 98 (165)
Q Consensus 91 D~I~i~~~ 98 (165)
|.|+.+-.
T Consensus 107 ~~vv~NlP 114 (272)
T PRK00274 107 LKVVANLP 114 (272)
T ss_pred ceEEEeCC
Confidence 77766543
No 156
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.99 E-value=2.1e-09 Score=84.11 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=81.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc----c----cc------CCCCC
Q psy8015 8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL----S----ST------IDPDH 72 (165)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~----~----~~------~~~~n 72 (165)
+.++-...++++.+. ..++.+||.. ||.|+-..+||..+.+|+++|+++.+++.|. . .. ....+
T Consensus 20 ~~~~p~L~~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 20 GEPNPALVEYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp TTSTHHHHHHHHHHT-TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 445556667777764 3778899999 9999999999999889999999999999872 1 00 12346
Q ss_pred eEEEEccCCCCCCC-CCCccEEEEcCCCCCchH--------HHHhccccCcE
Q psy8015 73 DYDLIADGRASFGD-NGPYDAIHVGAAYPRYPE--------IFIHHLKSGGR 115 (165)
Q Consensus 73 V~~~~gD~~~~~~~-~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~ 115 (165)
|++.++|.++.-+. .++||+|+=.+.+..+|. .+.++|+|||+
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 89999998874333 358999998888876663 57899999999
No 157
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.98 E-value=1.6e-09 Score=82.72 Aligned_cols=99 Identities=9% Similarity=0.150 Sum_probs=77.0
Q ss_pred HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC--CCCCcc
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG--DNGPYD 91 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~--~~~~fD 91 (165)
.+.+|. +|+.||||+ ||.|.+-..|.+.- -+.+++|++++.+..+..+ .+.++++|..+++. ++++||
T Consensus 6 ~I~~~I---~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD 77 (193)
T PF07021_consen 6 IIAEWI---EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFD 77 (193)
T ss_pred HHHHHc---CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCcc
Confidence 344543 689999999 99999888887743 4789999999988766432 36789999987653 468999
Q ss_pred EEEEcCCCCCc--hH-HHHhccccCcEEEEEecC
Q psy8015 92 AIHVGAAYPRY--PE-IFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 92 ~I~i~~~~~~~--p~-~l~~~LkpgG~lvi~~~~ 122 (165)
.|+++.+...+ |+ -+.+.|+-|.+.++.+++
T Consensus 78 ~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPN 111 (193)
T PF07021_consen 78 YVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPN 111 (193)
T ss_pred EEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecC
Confidence 99999988754 44 356788999999988764
No 158
>KOG2915|consensus
Probab=98.93 E-value=7.4e-09 Score=82.74 Aligned_cols=104 Identities=17% Similarity=0.083 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC-CCC
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA-SFG 85 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~-~~~ 85 (165)
.+.++..|. +.||.+|+|- ||||.++-.+++.+ |++++.|..+..++.|+ +++.++ +||++++-|... ++.
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 456666664 6999999999 99999999999987 89999999999999996 777886 589999999865 444
Q ss_pred C-CCCccEEEEcCCCCC--chHHHHhccccCc-EEEEE
Q psy8015 86 D-NGPYDAIHVGAAYPR--YPEIFIHHLKSGG-RLVIP 119 (165)
Q Consensus 86 ~-~~~fD~I~i~~~~~~--~p~~l~~~LkpgG-~lvi~ 119 (165)
. ...+|+||++-.-|+ +|-. .+.||.+| +++..
T Consensus 173 ~ks~~aDaVFLDlPaPw~AiPha-~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 173 IKSLKADAVFLDLPAPWEAIPHA-AKILKDEGGRLCSF 209 (314)
T ss_pred ccccccceEEEcCCChhhhhhhh-HHHhhhcCceEEec
Confidence 3 578999999876553 4444 45788776 55543
No 159
>KOG4300|consensus
Probab=98.93 E-value=2.9e-09 Score=82.17 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=70.1
Q ss_pred CCCeEEEE-ccccHHHHHHhc-cCCcEEEEeCCHHHHHhcc--cccCCCCCeE-EEEccCCCCC-CCCCCccEEEEcCCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPT-FIPNSFNINVYYYLSGGPL--SSTIDPDHDY-DLIADGRASF-GDNGPYDAIHVGAAY 99 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~-~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~-~~~gD~~~~~-~~~~~fD~I~i~~~~ 99 (165)
....|||| ||||..=..+-. -..+|+.+|.++.|-+.|. .++....+++ |+++++.+.. .++++||.|+++-..
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 34568999 999965443331 2458999999999999995 4443556787 9999997632 257899999998654
Q ss_pred CC------chHHHHhccccCcEEEEEe
Q psy8015 100 PR------YPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 100 ~~------~p~~l~~~LkpgG~lvi~~ 120 (165)
-. ...++.+.|||||++++..
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 32 2246789999999999875
No 160
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.91 E-value=2.2e-08 Score=76.33 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=86.4
Q ss_pred CchHHHHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhc-cCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC
Q psy8015 9 SVSGAVAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPT-FIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA 82 (165)
Q Consensus 9 ~~~~~~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~-~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~ 82 (165)
+-++.-..+..++.. .-.|.+|||+ +|||.++.+... -+.+|+.+|.|.+..+..+ .+.++. .+++++..|+..
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence 345566677788865 2579999999 999999976654 5689999999999999985 666774 469999999874
Q ss_pred CC---CCCCCccEEEEcCCCC-Cch--H-H-----HHhccccCcEEEEEecCC
Q psy8015 83 SF---GDNGPYDAIHVGAAYP-RYP--E-I-----FIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 83 ~~---~~~~~fD~I~i~~~~~-~~p--~-~-----l~~~LkpgG~lvi~~~~~ 123 (165)
.+ ....+||.||++..++ .+. + . -..+|+|+|.+|+-....
T Consensus 105 ~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 105 ALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 32 2223599999998887 232 1 1 136799999999976643
No 161
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.89 E-value=8.8e-09 Score=81.16 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhc-cc----ccCCCCCeEEEEcc
Q psy8015 10 VSGAVAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGP-LS----STIDPDHDYDLIAD 79 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A-~~----~~~~~~nV~~~~gD 79 (165)
+++...++.+.+... .++++|||+ ||||++|..+++. +++|+|+|++++|+... +. ...+..|++.. +
T Consensus 56 vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~--~ 133 (228)
T TIGR00478 56 VSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYV--T 133 (228)
T ss_pred hhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccC--C
Confidence 345555555555432 367899999 9999999999998 57899999999887752 21 12344555522 2
Q ss_pred CCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCC
Q psy8015 80 GRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 80 ~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
....+++...||+.|++... +.+.+.+.|+| |.+++.+-++
T Consensus 134 ~~~~~~d~~~~DvsfiS~~~--~l~~i~~~l~~-~~~~~L~KPq 174 (228)
T TIGR00478 134 PADIFPDFATFDVSFISLIS--ILPELDLLLNP-NDLTLLFKPQ 174 (228)
T ss_pred HhHcCCCceeeeEEEeehHh--HHHHHHHHhCc-CeEEEEcChH
Confidence 11222344578988885444 56678899999 9888877543
No 162
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.87 E-value=5.3e-10 Score=87.45 Aligned_cols=111 Identities=13% Similarity=0.048 Sum_probs=84.9
Q ss_pred CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--C
Q psy8015 9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--G 85 (165)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--~ 85 (165)
++|..++.|+..+.. .+-.++||+ ||||-.+..|-.++.+.+++|+|++|++.|..+. .++ ++.++|+..-. .
T Consensus 109 ~vP~~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg-~YD--~L~~Aea~~Fl~~~ 184 (287)
T COG4976 109 SVPELLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG-LYD--TLYVAEAVLFLEDL 184 (287)
T ss_pred ccHHHHHHHHHhccC-CccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhcc-chH--HHHHHHHHHHhhhc
Confidence 688899999998864 678999999 9999999999999999999999999999996432 122 33445543211 2
Q ss_pred CCCCccEEEEcCCCCC------chHHHHhccccCcEEEEEecCC
Q psy8015 86 DNGPYDAIHVGAAYPR------YPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 86 ~~~~fD~I~i~~~~~~------~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
+..+||.|......+. +.......|+|||.+.+++.+-
T Consensus 185 ~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 185 TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 3578999988755543 3345678999999999998753
No 163
>PHA03412 putative methyltransferase; Provisional
Probab=98.87 E-value=2.8e-08 Score=78.53 Aligned_cols=71 Identities=7% Similarity=-0.101 Sum_probs=56.8
Q ss_pred CCCeEEEE-ccccHHHHHHhcc-----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTF-----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~-----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
.+.+|||+ ||||.++..+++. ..+|+++|+++.+++.|+.. ..+++++.+|..... ..++||+|+.+...
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n---~~~~~~~~~D~~~~~-~~~~FDlIIsNPPY 124 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI---VPEATWINADALTTE-FDTLFDMAISNPPF 124 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh---ccCCEEEEcchhccc-ccCCccEEEECCCC
Confidence 47899999 9999999988864 24899999999999999732 346899999986532 24689999998654
Q ss_pred C
Q psy8015 100 P 100 (165)
Q Consensus 100 ~ 100 (165)
.
T Consensus 125 ~ 125 (241)
T PHA03412 125 G 125 (241)
T ss_pred C
Confidence 3
No 164
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.3e-08 Score=79.97 Aligned_cols=100 Identities=13% Similarity=-0.000 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC-CCCCCCc
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS-FGDNGPY 90 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~-~~~~~~f 90 (165)
...++++... ..+++.|||| +|.|.+|..|++.+.+|+|+|+|+++++..+......+|++++++|+..- ++....+
T Consensus 18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 4667778775 4779999999 99999999999999999999999999998763222467999999999763 2322267
Q ss_pred cEEEEcCCCCCchHHHHhccccC
Q psy8015 91 DAIHVGAAYPRYPEIFIHHLKSG 113 (165)
Q Consensus 91 D~I~i~~~~~~~p~~l~~~Lkpg 113 (165)
+.|+.+-.+.-=.+-++++|+.+
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~ 119 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEK 119 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhcc
Confidence 88887655432223344445544
No 165
>PLN02672 methionine S-methyltransferase
Probab=98.86 E-value=9.5e-09 Score=95.64 Aligned_cols=72 Identities=13% Similarity=-0.091 Sum_probs=57.2
Q ss_pred CCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCC----------------CCCeEEEEccCCCCCC
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTID----------------PDHDYDLIADGRASFG 85 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~----------------~~nV~~~~gD~~~~~~ 85 (165)
+.+|||+ ||||.++..+++.. .+|+++|+|+++++.|+ .+..+ .++|+++++|..+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999 99999999999865 58999999999999995 33221 2469999999877554
Q ss_pred CC-CCccEEEEcCC
Q psy8015 86 DN-GPYDAIHVGAA 98 (165)
Q Consensus 86 ~~-~~fD~I~i~~~ 98 (165)
.. .+||+|+.+..
T Consensus 199 ~~~~~fDlIVSNPP 212 (1082)
T PLN02672 199 DNNIELDRIVGCIP 212 (1082)
T ss_pred ccCCceEEEEECCC
Confidence 32 37999999753
No 166
>PHA03411 putative methyltransferase; Provisional
Probab=98.86 E-value=1.4e-08 Score=81.80 Aligned_cols=73 Identities=8% Similarity=-0.065 Sum_probs=58.9
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR 101 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~ 101 (165)
.+..+|||+ ||+|.++..+++.. .+|+++|++++|++.|+.+ ..+++++++|..+.. ...+||+|+++.....
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n---~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL---LPEAEWITSDVFEFE-SNEKFDVVISNPPFGK 138 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---CcCCEEEECchhhhc-ccCCCcEEEEcCCccc
Confidence 456799999 99999998887754 5899999999999999732 347999999987643 3468999999876643
No 167
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.84 E-value=6.4e-09 Score=77.48 Aligned_cols=71 Identities=15% Similarity=0.011 Sum_probs=55.7
Q ss_pred EEEeCCHHHHHhcc--cc--cC-CCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCchH------HHHhccccCcEEEEE
Q psy8015 51 FNINVYYYLSGGPL--SS--TI-DPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIP 119 (165)
Q Consensus 51 ~aiD~~~~~~~~A~--~~--~~-~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~ 119 (165)
+++|+|++|++.|+ .+ .. +..|++++++|+.+...+.++||+|++....+++++ ++.+.|||||++++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999995 22 11 235799999999764444578999999988877653 689999999999886
Q ss_pred ec
Q psy8015 120 IG 121 (165)
Q Consensus 120 ~~ 121 (165)
.-
T Consensus 81 d~ 82 (160)
T PLN02232 81 DF 82 (160)
T ss_pred EC
Confidence 54
No 168
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.84 E-value=6.5e-09 Score=87.63 Aligned_cols=107 Identities=12% Similarity=0.041 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCC--CCeEEEEccCCCCCC--
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDP--DHDYDLIADGRASFG-- 85 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~--~nV~~~~gD~~~~~~-- 85 (165)
..+++.-+ ..|++||++ |=||.+|...|..+. +|++||.|...++.|+ .+..|+ +.+.++++|+.+-+.
T Consensus 208 ~R~~l~~~---~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 208 NRRALGEL---AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred HHHHHhhh---ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHH
Confidence 33444443 249999999 999999999998764 9999999999999995 333343 458999999975332
Q ss_pred --CCCCccEEEEcCCC-C----C----------chHHHHhccccCcEEEEEecCC
Q psy8015 86 --DNGPYDAIHVGAAY-P----R----------YPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 86 --~~~~fD~I~i~~~~-~----~----------~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
...+||+|+++... . . +...+.+.|+|||.+++.....
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 23489999998532 1 1 1235789999999999976543
No 169
>PLN02823 spermine synthase
Probab=98.84 E-value=2.3e-08 Score=82.96 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=73.9
Q ss_pred CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--ccc----CCCCCeEEEEccCCCCCCC-CCCccEEE
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SST----IDPDHDYDLIADGRASFGD-NGPYDAIH 94 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~----~~~~nV~~~~gD~~~~~~~-~~~fD~I~ 94 (165)
...++||.| +|.|..+..+.+. ..+|+.+|+|+++++.|| +.. +.-++++++.+|+.+-+.. .++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 456899999 9999999877664 468999999999999997 321 1235799999999764332 46899999
Q ss_pred EcCCCCC------------chH-HHHhccccCcEEEEEecC
Q psy8015 95 VGAAYPR------------YPE-IFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 95 i~~~~~~------------~p~-~l~~~LkpgG~lvi~~~~ 122 (165)
++...+. .-+ .+.+.|+|||.+++..+.
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 9954431 112 567899999999987643
No 170
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.75 E-value=4e-08 Score=82.60 Aligned_cols=94 Identities=9% Similarity=0.068 Sum_probs=75.7
Q ss_pred CeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCC
Q psy8015 28 LDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYP 100 (165)
Q Consensus 28 ~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~ 100 (165)
-+|||. ||||..+..++.. +.+|+++|+|+++++.++ ++..+.+|++++++|+...+.. ...||+|+++. +.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 589999 9999999999875 368999999999999985 5555677899999998764432 25799999987 33
Q ss_pred ---CchHHHHhccccCcEEEEEecC
Q psy8015 101 ---RYPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 101 ---~~p~~l~~~LkpgG~lvi~~~~ 122 (165)
.+-+...+.+++||.|.+...+
T Consensus 125 s~~~fld~al~~~~~~glL~vTaTD 149 (374)
T TIGR00308 125 TPAPFVDSAIQASAERGLLLVTATD 149 (374)
T ss_pred CcHHHHHHHHHhcccCCEEEEEecc
Confidence 2335677899999999998654
No 171
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.74 E-value=4.1e-08 Score=74.58 Aligned_cols=93 Identities=13% Similarity=0.010 Sum_probs=63.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC-----------cEEEEeCCHHHHHhcc--cccCCCCC-
Q psy8015 8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP-----------NSFNINVYYYLSGGPL--SSTIDPDH- 72 (165)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~-----------~V~aiD~~~~~~~~A~--~~~~~~~n- 72 (165)
.|.....|..+-.+....+++.|||- ||||.+..+.+.... ++++.|+++++++.|+ ++..+..+
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 44455555555555566889999999 999999977776542 2779999999999996 67777764
Q ss_pred eEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 73 DYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 73 V~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
+++.++|+.+.....+.+|.|+.+....
T Consensus 90 i~~~~~D~~~l~~~~~~~d~IvtnPPyG 117 (179)
T PF01170_consen 90 IDFIQWDARELPLPDGSVDAIVTNPPYG 117 (179)
T ss_dssp EEEEE--GGGGGGTTSBSCEEEEE--ST
T ss_pred eEEEecchhhcccccCCCCEEEECcchh
Confidence 8999999876443457899999987664
No 172
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.72 E-value=3.3e-08 Score=76.11 Aligned_cols=98 Identities=18% Similarity=0.104 Sum_probs=73.5
Q ss_pred CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC---CCCCCccEEEEcC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF---GDNGPYDAIHVGA 97 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~---~~~~~fD~I~i~~ 97 (165)
....+||| ||.|.+...+|..- ..++|+|++...+..|. ..+.+++|+.++.+|+...+ .+.+++|.|++..
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 44589999 99999999999876 47999999999999884 56668999999999997622 3457999999987
Q ss_pred CCCCc--------------hHHHHhccccCcEEEEEecCC
Q psy8015 98 AYPRY--------------PEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 98 ~~~~~--------------p~~l~~~LkpgG~lvi~~~~~ 123 (165)
..|.. .+.+.+.|+|||.+.+..+..
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 66522 135789999999998876643
No 173
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.72 E-value=6.8e-09 Score=77.74 Aligned_cols=70 Identities=7% Similarity=-0.046 Sum_probs=51.8
Q ss_pred CeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCC---CCccEEEEcC
Q psy8015 28 LDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDN---GPYDAIHVGA 97 (165)
Q Consensus 28 ~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~---~~fD~I~i~~ 97 (165)
+.|+|+ ||.|..|..+|+.+.+|+++|+|+..++.|+ .+-.|. +||+++++|..+.+... ..||+||++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999 9999999999999999999999999999996 666775 47999999987643321 1289999974
No 174
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.71 E-value=1e-08 Score=83.19 Aligned_cols=107 Identities=16% Similarity=0.052 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc----cccCCCCCeEEEEccCCCCCC--
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL----SSTIDPDHDYDLIADGRASFG-- 85 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~----~~~~~~~nV~~~~gD~~~~~~-- 85 (165)
..+++... ..+++||++ |=||.++...+... .+|+++|.|..+++.|+ ++.+..++++++.+|+.+-+.
T Consensus 114 nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~ 190 (286)
T PF10672_consen 114 NRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRL 190 (286)
T ss_dssp HHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHH
T ss_pred hHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHH
Confidence 34444443 468999999 99999998877655 58999999999999995 344445679999999875332
Q ss_pred -CCCCccEEEEcCCCC-----Cc-------hHHHHhccccCcEEEEEecCC
Q psy8015 86 -DNGPYDAIHVGAAYP-----RY-------PEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 86 -~~~~fD~I~i~~~~~-----~~-------p~~l~~~LkpgG~lvi~~~~~ 123 (165)
..++||+|+++...- .+ ...+.+.|+|||.|+......
T Consensus 191 ~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 191 KKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp HHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred hcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 246899999985421 11 124679999999998766543
No 175
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.2e-07 Score=72.31 Aligned_cols=71 Identities=8% Similarity=0.013 Sum_probs=58.9
Q ss_pred CCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
.|.+|+|+ ||||.++.-.+.+. .+|+++|+|+++++.++ .++ ...+|+|+.+|+... .++||.++.+..+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~---~~~~dtvimNPPFG 119 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF---RGKFDTVIMNPPFG 119 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc---CCccceEEECCCCc
Confidence 57889999 99999999888876 68999999999999996 444 456899999998753 35799998886553
No 176
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.66 E-value=1.7e-07 Score=74.68 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=75.8
Q ss_pred EEEecCCchHHHHHHHHHHhc----CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEE
Q psy8015 3 IVFVSGSVSGAVAKYVTYLSG----HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLI 77 (165)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~l~~----~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~ 77 (165)
.|||.. +..+++..-.. -....++||| +|.|-.|..+++...+|++.|.|+.|... +++.|. +++.
T Consensus 71 FvfS~~----Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~r--L~~kg~---~vl~ 141 (265)
T PF05219_consen 71 FVFSEE----QFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWR--LSKKGF---TVLD 141 (265)
T ss_pred EEecHH----HHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHH--HHhCCC---eEEe
Confidence 355543 67777775411 0246789999 99999999999999999999999999664 333344 3333
Q ss_pred ccCCCCCCCCCCccEEEEcCCCC--C----chHHHHhccccCcEEEEEec
Q psy8015 78 ADGRASFGDNGPYDAIHVGAAYP--R----YPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 78 gD~~~~~~~~~~fD~I~i~~~~~--~----~p~~l~~~LkpgG~lvi~~~ 121 (165)
.|-.. ....+||+|-+-..+. . +...+.+.|+|+|++++.+-
T Consensus 142 ~~~w~--~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 142 IDDWQ--QTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred hhhhh--ccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 33221 1235899999876554 2 33578899999999998754
No 177
>PRK04148 hypothetical protein; Provisional
Probab=98.65 E-value=2.4e-07 Score=67.23 Aligned_cols=93 Identities=11% Similarity=-0.054 Sum_probs=68.9
Q ss_pred CCCCeEEEE-ccccH-HHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCCC
Q psy8015 25 SKRLDCLAL-TSNTK-QSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYPR 101 (165)
Q Consensus 25 ~~~~~vLei-~GsG~-~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~~ 101 (165)
.++.++||| ||+|+ ++..|++...+|+++|++++.++.|+.. .++++.+|.++.-.+ ...+|+|+.-...++
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 467899999 99997 9999999889999999999999888522 368899998764433 467999999888877
Q ss_pred chHHHHhcccc-CcEEEE-EecC
Q psy8015 102 YPEIFIHHLKS-GGRLVI-PIGD 122 (165)
Q Consensus 102 ~p~~l~~~Lkp-gG~lvi-~~~~ 122 (165)
+...+.+.-+. |.-+++ +...
T Consensus 90 l~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 90 LQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCC
Confidence 76654443332 333333 4443
No 178
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.61 E-value=9.9e-08 Score=77.46 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC
Q psy8015 11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF 84 (165)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~ 84 (165)
.+....+...+....++++|||. ++.|.-|..++.+. ++|+|.|++++.++..+ ++++|..|+.....|+....
T Consensus 70 Qd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~ 149 (283)
T PF01189_consen 70 QDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD 149 (283)
T ss_dssp HHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH
T ss_pred cccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc
Confidence 33444444444445899999999 99999999999886 58999999999999874 78899999999998876532
Q ss_pred --CCCCCccEEEEcCCCCC------chH----------------------HHHhcc----ccCcEEEEEec
Q psy8015 85 --GDNGPYDAIHVGAAYPR------YPE----------------------IFIHHL----KSGGRLVIPIG 121 (165)
Q Consensus 85 --~~~~~fD~I~i~~~~~~------~p~----------------------~l~~~L----kpgG~lvi~~~ 121 (165)
.....||.|++++.+.. -|+ ...+.+ ||||++|...-
T Consensus 150 ~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 150 PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 22346999999976642 121 246889 99999999753
No 179
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.61 E-value=5.4e-07 Score=70.96 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=71.3
Q ss_pred cCCCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 23 GHSKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 23 ~~~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
...+..+|+|| .|+|.++..+++... +++..|. |+.++.++. .++|+++.||..+.+|. +|++++...+
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~~~P~---~D~~~l~~vL 168 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFDPLPV---ADVYLLRHVL 168 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTTCCSS---ESEEEEESSG
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHhhhcc---ccceeeehhh
Confidence 34677899999 999999999998764 7888998 888887754 56899999999865553 9999999999
Q ss_pred CCchH--------HHHhccccC--cEEEEEe
Q psy8015 100 PRYPE--------IFIHHLKSG--GRLVIPI 120 (165)
Q Consensus 100 ~~~p~--------~l~~~Lkpg--G~lvi~~ 120 (165)
++.++ .+.+.|+|| |+|++..
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 87664 468899999 9999864
No 180
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.60 E-value=4.1e-07 Score=73.82 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=75.7
Q ss_pred CeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccC----CCCCeEEEEccCCCCCCCC-CCccEEEEcC
Q psy8015 28 LDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTI----DPDHDYDLIADGRASFGDN-GPYDAIHVGA 97 (165)
Q Consensus 28 ~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~----~~~nV~~~~gD~~~~~~~~-~~fD~I~i~~ 97 (165)
++||-| -|.|..+..+.+.- .+++.+|+|+++++.|| +... .-+.++++.+|+.+-+... .+||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999 99999999998865 79999999999999997 3222 1357999999997744432 3799999997
Q ss_pred CCCCch----------HHHHhccccCcEEEEEecC
Q psy8015 98 AYPRYP----------EIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 98 ~~~~~p----------~~l~~~LkpgG~lvi~~~~ 122 (165)
..+.=| +.+.+.|+|+|.+++..+.
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 766222 4689999999999998443
No 181
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.58 E-value=5.3e-07 Score=71.04 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=80.5
Q ss_pred CCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC---CCCCCCCccEEEEcCC
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA---SFGDNGPYDAIHVGAA 98 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~---~~~~~~~fD~I~i~~~ 98 (165)
...+||| ||.|.+...+|+.-. ..+|||+....+..|. .++.+++|+.++++||.. -+.+.++.|.|++...
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 3689999 999999999998864 6999999999999883 777888899999999975 3345569999999877
Q ss_pred CCCc--------------hHHHHhccccCcEEEEEecCCC
Q psy8015 99 YPRY--------------PEIFIHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 99 ~~~~--------------p~~l~~~LkpgG~lvi~~~~~~ 124 (165)
.|.. .+.+.+.|+|||.+.+..+..+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~ 168 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE 168 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHH
Confidence 6532 2457899999999999876543
No 182
>KOG2904|consensus
Probab=98.57 E-value=8.1e-07 Score=71.35 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCC-eEEE----EccC
Q psy8015 13 AVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDH-DYDL----IADG 80 (165)
Q Consensus 13 ~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~----~gD~ 80 (165)
.+...++.+... .++..+||+ ||||..+.-+++.. ..|+|+|.|+.++..|. ..++++.+ +.++ .+|.
T Consensus 133 ~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~ 212 (328)
T KOG2904|consen 133 WVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDA 212 (328)
T ss_pred HHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccc
Confidence 455566665432 356689999 99999998888765 57999999999999994 55556554 7777 4555
Q ss_pred CCCCC-CCCCccEEEEcCCCC---Cch-----------H------------------HHHhccccCcEEEEEec
Q psy8015 81 RASFG-DNGPYDAIHVGAAYP---RYP-----------E------------------IFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 81 ~~~~~-~~~~fD~I~i~~~~~---~~p-----------~------------------~l~~~LkpgG~lvi~~~ 121 (165)
....+ ..+++|.++++..+- +++ . -..+.|+|||.++...+
T Consensus 213 ~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 213 SDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 54332 247899999875431 111 0 13589999999999887
No 183
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.56 E-value=1.3e-07 Score=77.11 Aligned_cols=88 Identities=8% Similarity=-0.090 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS 83 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~ 83 (165)
+|=+...+++.|. ..|+..++|. ||.|..|..+++.. ++|+|+|.|+++++.|+ ++. .++++++++|..+.
T Consensus 4 ~pVll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l 80 (296)
T PRK00050 4 IPVLLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNL 80 (296)
T ss_pred ccccHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHH
Confidence 3456778899985 3789999999 99999999999875 68999999999999996 433 46899999997542
Q ss_pred ---CCC-CCCccEEEEcCCCC
Q psy8015 84 ---FGD-NGPYDAIHVGAAYP 100 (165)
Q Consensus 84 ---~~~-~~~fD~I~i~~~~~ 100 (165)
.++ ..+||.|+++-+..
T Consensus 81 ~~~l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 81 KEVLAEGLGKVDGILLDLGVS 101 (296)
T ss_pred HHHHHcCCCccCEEEECCCcc
Confidence 122 12799999985543
No 184
>KOG3010|consensus
Probab=98.55 E-value=1.8e-07 Score=73.73 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=65.3
Q ss_pred CCCC-eEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccc-cCCCCC--eEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 25 SKRL-DCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSS-TIDPDH--DYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 25 ~~~~-~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~-~~~~~n--V~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
.++. ..+|+ ||+|.-+..+|....+|+|+|+|++|++.|+.. ..-..+ ......+.......+++.|.|.+.-+.
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 3444 89999 999988888888889999999999999999621 111111 222223333333235789999998888
Q ss_pred CCc--h---HHHHhccccCcEEEEE
Q psy8015 100 PRY--P---EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 100 ~~~--p---~~l~~~LkpgG~lvi~ 119 (165)
|.. + ....+.||+.|-++++
T Consensus 111 HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 111 HWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HhhchHHHHHHHHHHcCCCCCEEEE
Confidence 743 2 3578899998855554
No 185
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.55 E-value=6.1e-07 Score=67.26 Aligned_cols=109 Identities=17% Similarity=0.071 Sum_probs=80.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHH-HhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC
Q psy8015 8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTT-LPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS 83 (165)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~-la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~ 83 (165)
+|-|...++|...... +.|.-|||+ .|||-+|.. |++.. ..++++|.|++.+..-+.. .+.+.+++||+...
T Consensus 31 PsSs~lA~~M~s~I~p-esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~---~p~~~ii~gda~~l 106 (194)
T COG3963 31 PSSSILARKMASVIDP-ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL---YPGVNIINGDAFDL 106 (194)
T ss_pred CCcHHHHHHHHhccCc-ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh---CCCccccccchhhH
Confidence 3445567778777754 788999999 999999954 55554 4799999999999877522 34677999998642
Q ss_pred C-----CCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015 84 F-----GDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 84 ~-----~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~ 120 (165)
- .....||+|+++-..-++| +.+...|.+||.+|-..
T Consensus 107 ~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 107 RTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 2 2235799999987666655 56788899999887654
No 186
>KOG2899|consensus
Probab=98.54 E-value=1.1e-07 Score=74.97 Aligned_cols=39 Identities=5% Similarity=0.024 Sum_probs=35.7
Q ss_pred CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL 64 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~ 64 (165)
.+..+||| |-+|.+|+.+|+.. ..|.++|+|+.+++.||
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ar 99 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRAR 99 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHH
Confidence 57889999 99999999999875 57999999999999996
No 187
>KOG1499|consensus
Probab=98.54 E-value=1.9e-07 Score=77.01 Aligned_cols=91 Identities=10% Similarity=-0.085 Sum_probs=69.3
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCC-CCCCCCCccEEEEcCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRA-SFGDNGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~-~~~~~~~fD~I~i~~~ 98 (165)
-+++.|||+ ||||.++...|+.+ .+|+|+|.+.=+ +.|+ .+..+.++ |+++.|.+.+ .+| ..+.|.|+.-..
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP-~eKVDiIvSEWM 136 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP-VEKVDIIVSEWM 136 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC-ccceeEEeehhh
Confidence 368999999 99999999888876 689999988744 7775 55567777 9999999877 344 578999988643
Q ss_pred CC-----CchHHH----HhccccCcEEE
Q psy8015 99 YP-----RYPEIF----IHHLKSGGRLV 117 (165)
Q Consensus 99 ~~-----~~p~~l----~~~LkpgG~lv 117 (165)
-. .+.+.+ -++|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 32 233322 37899999865
No 188
>KOG2187|consensus
Probab=98.52 E-value=3.1e-07 Score=78.96 Aligned_cols=136 Identities=7% Similarity=-0.033 Sum_probs=91.7
Q ss_pred HHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC-----CC
Q psy8015 18 VTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN-----GP 89 (165)
Q Consensus 18 l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~-----~~ 89 (165)
-+|+ +...++.++|+ ||||.++..+|+.+++|+++|++++.++.|+ ....|++|.+|+.|-+.+.++.. +.
T Consensus 376 ~e~~-~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~ 454 (534)
T KOG2187|consen 376 GEWA-GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDS 454 (534)
T ss_pred HHHh-CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCC
Confidence 3444 55778999999 9999999999999999999999999999996 56668999999999766544331 23
Q ss_pred cc-EEEEcCCCCCchHHHH---hccc-cCcEEEEEecCCCc----eEEEEEEE--ccCCcEEEEEeeeEEEeeecc
Q psy8015 90 YD-AIHVGAAYPRYPEIFI---HHLK-SGGRLVIPIGDTKQ----QMLTIYDK--FHNGTIDIQHWGVVQVGLLYD 154 (165)
Q Consensus 90 fD-~I~i~~~~~~~p~~l~---~~Lk-pgG~lvi~~~~~~~----~~~~~~~k--~~~~~~~~~~l~~~~~~pl~~ 154 (165)
=+ +++++....-+...+. +..+ +-=.+++.|...+. ..+..=.+ ...|.|.......++.+|.++
T Consensus 455 ~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr~~~~~~VDlfP~T~ 530 (534)
T KOG2187|consen 455 ETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFRLVKAVGVDLFPHTP 530 (534)
T ss_pred CceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcCccccccccccceeeeeecccCCCCC
Confidence 35 6666655544433222 3333 55666777765431 11111111 112457777777887777664
No 189
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.50 E-value=2.8e-07 Score=73.39 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=73.4
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--ccc----CCCCCeEEEEccCCCCCCC-CC-CccEE
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SST----IDPDHDYDLIADGRASFGD-NG-PYDAI 93 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~----~~~~nV~~~~gD~~~~~~~-~~-~fD~I 93 (165)
...++||-| -|.|..+..+.+.- .+|+.+|+|+++++.|+ +.. ..-++++++.+|+..-+.. .+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 568999999 99999999988764 68999999999999996 221 2345799999999653222 23 79999
Q ss_pred EEcCCCCCch----------HHHHhccccCcEEEEEec
Q psy8015 94 HVGAAYPRYP----------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 94 ~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~ 121 (165)
+++...+.-+ +.+.+.|+|||.++...+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 9987765322 357899999999999864
No 190
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.49 E-value=3.7e-07 Score=74.47 Aligned_cols=110 Identities=17% Similarity=0.101 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---------CCcEEEEeCCHHHHHhcc----cccCCCCCeEEEE
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---------IPNSFNINVYYYLSGGPL----SSTIDPDHDYDLI 77 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---------~~~V~aiD~~~~~~~~A~----~~~~~~~nV~~~~ 77 (165)
..+++++..+....++.+|+|- ||+|.+...+.+. -.+++++|+++.++..|+ +...+..+..+..
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 3444444333355778899999 9999988776652 257999999999999986 2222233457889
Q ss_pred ccCCCCCCC--CCCccEEEEcCCCCCc------------------h---------HHHHhccccCcEEEEEec
Q psy8015 78 ADGRASFGD--NGPYDAIHVGAAYPRY------------------P---------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 78 gD~~~~~~~--~~~fD~I~i~~~~~~~------------------p---------~~l~~~LkpgG~lvi~~~ 121 (165)
+|....... ...||+|+.+...... + ....+.|++||++++.++
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 997653322 4689999998544321 0 135799999999888765
No 191
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.48 E-value=3.2e-07 Score=70.08 Aligned_cols=94 Identities=14% Similarity=0.055 Sum_probs=73.8
Q ss_pred eEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC--C
Q psy8015 29 DCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP--R 101 (165)
Q Consensus 29 ~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~--~ 101 (165)
+++|| ||.|+-+..||=.. .+|+-+|.+.+-+..-+ .+.+|++|++++++.+.+ .....+||+|+.-+..+ .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~l~~ 129 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAPLDK 129 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSSHHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcCHHH
Confidence 89999 99999999888665 47999999999998876 678899999999999877 33457899998876553 3
Q ss_pred chHHHHhccccCcEEEEEecCC
Q psy8015 102 YPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 102 ~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
+-+-+...|++||++++.-|..
T Consensus 130 l~~~~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 130 LLELARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp HHHHHGGGEEEEEEEEEEESS-
T ss_pred HHHHHHHhcCCCCEEEEEcCCC
Confidence 4456678999999999988754
No 192
>PRK00536 speE spermidine synthase; Provisional
Probab=98.43 E-value=2.3e-06 Score=68.81 Aligned_cols=96 Identities=9% Similarity=-0.062 Sum_probs=73.0
Q ss_pred CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--c----ccCCCCCeEEEEccCCCCCCCCCCccEEEEc
Q psy8015 24 HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--S----STIDPDHDYDLIADGRASFGDNGPYDAIHVG 96 (165)
Q Consensus 24 ~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~----~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~ 96 (165)
+...++||=| .|-|..+.++.+--.+|+-+|+|+++++.+| + ..++-++++++.. ..+ ...++||+|+++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 3567999999 9999999999987679999999999999996 2 2234456888762 111 113689999999
Q ss_pred CCCC-CchHHHHhccccCcEEEEEecC
Q psy8015 97 AAYP-RYPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 97 ~~~~-~~p~~l~~~LkpgG~lvi~~~~ 122 (165)
...+ +.-+.+.+.|+|||.++.-.+.
T Consensus 147 s~~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 147 QEPDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred CCCChHHHHHHHHhcCCCcEEEECCCC
Confidence 6543 3445789999999999996543
No 193
>KOG0820|consensus
Probab=98.43 E-value=1.8e-06 Score=69.24 Aligned_cols=83 Identities=7% Similarity=-0.110 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCC---CeEEEEccCCCCCCCC
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPD---HDYDLIADGRASFGDN 87 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~---nV~~~~gD~~~~~~~~ 87 (165)
.....+++... +++++.|||+ .|||.+|..|-..+.+|+|+|+|+.|+.....+-.|.+ ..++++||..... .
T Consensus 45 ~v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--~ 121 (315)
T KOG0820|consen 45 LVIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--L 121 (315)
T ss_pred HHHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC--C
Confidence 34555666653 5899999999 99999999999999999999999999987742223433 4899999986532 2
Q ss_pred CCccEEEEcC
Q psy8015 88 GPYDAIHVGA 97 (165)
Q Consensus 88 ~~fD~I~i~~ 97 (165)
..||.++.+-
T Consensus 122 P~fd~cVsNl 131 (315)
T KOG0820|consen 122 PRFDGCVSNL 131 (315)
T ss_pred cccceeeccC
Confidence 3689877753
No 194
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.42 E-value=1.1e-06 Score=66.28 Aligned_cols=97 Identities=8% Similarity=-0.023 Sum_probs=60.1
Q ss_pred CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCC---CCCeEEEEccCCCCC----CCCCCccE
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTID---PDHDYDLIADGRASF----GDNGPYDA 92 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~---~~nV~~~~gD~~~~~----~~~~~fD~ 92 (165)
.++.+|||+ ||+|..+..++.+ ..+|+..|.++ .++..+ ++..+ ..++++..-|-.+.. .+..+||.
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 678999999 9999999999998 57999999999 777664 33322 346787776643311 22358999
Q ss_pred EEEcCCCCC------chHHHHhccccCcEEEEEecC
Q psy8015 93 IHVGAAYPR------YPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 93 I~i~~~~~~------~p~~l~~~LkpgG~lvi~~~~ 122 (165)
|+....... +.+.+.+.|+|+|.+++....
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 988765532 224578899999997776654
No 195
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.42 E-value=1.9e-06 Score=70.13 Aligned_cols=96 Identities=18% Similarity=0.117 Sum_probs=68.7
Q ss_pred CCeEEEE-cccc----HHHHHHhccC------CcEEEEeCCHHHHHhccc---c-----c-----------------CC-
Q psy8015 27 RLDCLAL-TSNT----KQSTTLPTFI------PNSFNINVYYYLSGGPLS---S-----T-----------------ID- 69 (165)
Q Consensus 27 ~~~vLei-~GsG----~~t~~la~~~------~~V~aiD~~~~~~~~A~~---~-----~-----------------~~- 69 (165)
.-|||-. |+|| .+|..+.... -+|+|+|+|+.+++.|+. . . -|
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999 9999 3444444432 269999999999999951 1 0 01
Q ss_pred ------C-CCeEEEEccCCC-CCCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEecC
Q psy8015 70 ------P-DHDYDLIADGRA-SFGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 70 ------~-~nV~~~~gD~~~-~~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~~ 122 (165)
+ ..|+|...|..+ .++..+.||+|+|.....++. +.+.+.|+|||.|++-..+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 2 347899999876 344457899999987665442 3578999999998886654
No 196
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.41 E-value=1.6e-06 Score=71.60 Aligned_cols=75 Identities=8% Similarity=-0.037 Sum_probs=54.6
Q ss_pred CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccC-CCC-CeEEEE-ccC---CCCC-CCCCCccEE
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTI-DPD-HDYDLI-ADG---RASF-GDNGPYDAI 93 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~-~~~-nV~~~~-gD~---~~~~-~~~~~fD~I 93 (165)
++.++||| ||+|.+...++... -+++++|+|+.+++.|+ .+.. ++. +|+++. .|. ..+. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 56899999 99998887777543 48999999999999996 4444 454 588764 332 2222 234689999
Q ss_pred EEcCCCC
Q psy8015 94 HVGAAYP 100 (165)
Q Consensus 94 ~i~~~~~ 100 (165)
+++..+.
T Consensus 194 vcNPPf~ 200 (321)
T PRK11727 194 LCNPPFH 200 (321)
T ss_pred EeCCCCc
Confidence 9987654
No 197
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.40 E-value=1.5e-06 Score=67.16 Aligned_cols=94 Identities=16% Similarity=0.076 Sum_probs=66.8
Q ss_pred CCCeEEEE-ccccHHHHHHhccCCc--EEEEeCCHHHHHhcc--cccCCCCCe-EEEEccCCCC-CC-------CCCCcc
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFIPN--SFNINVYYYLSGGPL--SSTIDPDHD-YDLIADGRAS-FG-------DNGPYD 91 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~~~--V~aiD~~~~~~~~A~--~~~~~~~nV-~~~~gD~~~~-~~-------~~~~fD 91 (165)
.+.+|||| +|||.-+..+|+...+ -.-.|.++....-.+ .+..+.+|+ .-+.-|+... ++ ..++||
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 34469999 9999999999998764 456788888854332 445566664 2344454432 22 235899
Q ss_pred EEEEcCCCCCchH--------HHHhccccCcEEEEE
Q psy8015 92 AIHVGAAYPRYPE--------IFIHHLKSGGRLVIP 119 (165)
Q Consensus 92 ~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~ 119 (165)
+||+....|-.|. ...+.|++||.|++.
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 9999988887763 356899999999884
No 198
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.36 E-value=2.2e-06 Score=68.72 Aligned_cols=70 Identities=11% Similarity=-0.070 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA 82 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~ 82 (165)
....++++.+. ..++..|+|| +|+|.+|..|++.+.+|+++|+|+++++..+.+....+|++++.+|+..
T Consensus 17 ~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 17 NIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence 45667888875 4689999999 9999999999999999999999999999886322245789999999976
No 199
>PRK10742 putative methyltransferase; Provisional
Probab=98.36 E-value=1.1e-06 Score=69.95 Aligned_cols=79 Identities=8% Similarity=-0.019 Sum_probs=63.2
Q ss_pred cCCCCC--eEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccC------C--C-CCeEEEEccCCCCCCC-C
Q psy8015 23 GHSKRL--DCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTI------D--P-DHDYDLIADGRASFGD-N 87 (165)
Q Consensus 23 ~~~~~~--~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~------~--~-~nV~~~~gD~~~~~~~-~ 87 (165)
.++++. +|||. +|+|..+..++..+.+|+.+|.++.+....+ ++++ + + .+++++++|+.+-+.. .
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 446777 99999 9999999999999888999999999998874 4432 3 2 5799999998654332 2
Q ss_pred CCccEEEEcCCCCC
Q psy8015 88 GPYDAIHVGAAYPR 101 (165)
Q Consensus 88 ~~fD~I~i~~~~~~ 101 (165)
..||+||++..+++
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 47999999988874
No 200
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.35 E-value=1.9e-06 Score=74.11 Aligned_cols=90 Identities=13% Similarity=-0.046 Sum_probs=60.6
Q ss_pred CCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEc
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVG 96 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~ 96 (165)
+..|||| ||+|-++...++.+ .+|+|+|.|+.+....+ .+..+. ++|+++++|..+- ....+.|+|+.-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v-~lpekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV-ELPEKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS-CHSS-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC-CCCCceeEEEEe
Confidence 5789999 99999986665543 58999999998877653 255566 4699999998763 323589999884
Q ss_pred C----CCCCc-hH---HHHhccccCcEEE
Q psy8015 97 A----AYPRY-PE---IFIHHLKSGGRLV 117 (165)
Q Consensus 97 ~----~~~~~-p~---~l~~~LkpgG~lv 117 (165)
- ...++ |+ ..-+.|||||+++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 2 22333 33 3457899998754
No 201
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.30 E-value=2.1e-06 Score=71.24 Aligned_cols=98 Identities=14% Similarity=0.015 Sum_probs=67.4
Q ss_pred CCCeEEEE-cccc-HHHHHHhccCCcEEEEeCCHHHHHhcc--c---cc----CCC---CCeEEEEccCCCC-----CCC
Q psy8015 26 KRLDCLAL-TSNT-KQSTTLPTFIPNSFNINVYYYLSGGPL--S---ST----IDP---DHDYDLIADGRAS-----FGD 86 (165)
Q Consensus 26 ~~~~vLei-~GsG-~~t~~la~~~~~V~aiD~~~~~~~~A~--~---~~----~~~---~nV~~~~gD~~~~-----~~~ 86 (165)
++.+|||+ ||=| -+--|...-.++++++|+++..++.|+ . ++ ... -..+++.+|.... +++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 78999999 9955 566777666799999999999999995 2 11 011 2468899998631 222
Q ss_pred -CCCccEEEEcCCCCCch----------HHHHhccccCcEEEEEecCC
Q psy8015 87 -NGPYDAIHVGAAYPRYP----------EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 87 -~~~fD~I~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~~~ 123 (165)
..+||+|-+-.+.|..- ..+.+.|+|||+++..+.+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 25899999988887432 35789999999999988754
No 202
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.30 E-value=1.4e-06 Score=66.61 Aligned_cols=90 Identities=9% Similarity=-0.072 Sum_probs=69.1
Q ss_pred CCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC---
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY--- 99 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~--- 99 (165)
..+.+.|+ +|||.++...|+.+.+|+|+|.+|..++.|. +.--|..|++++.||+..--. ...|.|+|---.
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 35899999 9999999999999999999999999999995 545678899999999975222 356888774221
Q ss_pred ---CCch--HHHHhccccCcEEE
Q psy8015 100 ---PRYP--EIFIHHLKSGGRLV 117 (165)
Q Consensus 100 ---~~~p--~~l~~~LkpgG~lv 117 (165)
+++| ....+.||..+.++
T Consensus 110 i~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccc
Confidence 1233 35567788887754
No 203
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.29 E-value=2.2e-06 Score=66.11 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=59.8
Q ss_pred CCCeEEEE-cccc----HHHHHHhcc----CC---cEEEEeCCHHHHHhcc--------cccC-------------C---
Q psy8015 26 KRLDCLAL-TSNT----KQSTTLPTF----IP---NSFNINVYYYLSGGPL--------SSTI-------------D--- 69 (165)
Q Consensus 26 ~~~~vLei-~GsG----~~t~~la~~----~~---~V~aiD~~~~~~~~A~--------~~~~-------------~--- 69 (165)
+.-+||-. |+|| .+|..+... .+ +++|.|+|+.+++.|+ ++.. |
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999 9999 344444441 23 7999999999999995 2111 1
Q ss_pred ------CCCeEEEEccCCCCCCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEecC
Q psy8015 70 ------PDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 70 ------~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~~ 122 (165)
.++|+|...|..+..+..+.||+|||-...-.+. +.+.+.|+|||.|++-..+
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 2368999999877455568999999987765433 4678999999999996654
No 204
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.29 E-value=7.4e-07 Score=67.24 Aligned_cols=103 Identities=17% Similarity=0.056 Sum_probs=66.2
Q ss_pred chHHHHHHHHHHhcCC-----CCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccC
Q psy8015 10 VSGAVAKYVTYLSGHS-----KRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADG 80 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~-----~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~ 80 (165)
++++.-+|.|.+.... ++.+|||+ |++|.++..+.+.. ++|+|+|+.+.- ...++..+.+|.
T Consensus 2 vsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~~~~~~~i~~d~ 72 (181)
T PF01728_consen 2 VSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------PLQNVSFIQGDI 72 (181)
T ss_dssp SSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S-TTEEBTTGGG
T ss_pred CCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------cccceeeeeccc
Confidence 4567778888887653 34999999 99999999999987 799999998761 123444444443
Q ss_pred CC--------C-CC-CCCCccEEEEcCCCCC--ch---------------HHHHhccccCcEEEEEec
Q psy8015 81 RA--------S-FG-DNGPYDAIHVGAAYPR--YP---------------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 81 ~~--------~-~~-~~~~fD~I~i~~~~~~--~p---------------~~l~~~LkpgG~lvi~~~ 121 (165)
.+ . +. ...+||+|+++++... .+ .-..+.|+|||.+|+-+-
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 21 1 11 1258999999985431 11 113578999999888653
No 205
>KOG3420|consensus
Probab=98.28 E-value=1.7e-06 Score=63.54 Aligned_cols=89 Identities=8% Similarity=-0.073 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC
Q psy8015 11 SGAVAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS 83 (165)
Q Consensus 11 ~~~~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~ 83 (165)
|...+-|++.+..- -.|++++|+ ||+|-++...+... ..|.++|++|+.+++++ .+++.+ |+++.+.|....
T Consensus 30 p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildl 108 (185)
T KOG3420|consen 30 PHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDL 108 (185)
T ss_pred HHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccch
Confidence 45666777766432 258999999 99999997777665 57999999999999996 444444 679999998776
Q ss_pred CCCCCCccEEEEcCCCC
Q psy8015 84 FGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 84 ~~~~~~fD~I~i~~~~~ 100 (165)
-+..+.||..+++..+.
T Consensus 109 e~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 109 ELKGGIFDTAVINPPFG 125 (185)
T ss_pred hccCCeEeeEEecCCCC
Confidence 66678999999987654
No 206
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.25 E-value=2.6e-06 Score=66.42 Aligned_cols=94 Identities=15% Similarity=0.092 Sum_probs=63.9
Q ss_pred CCCeEEEE-ccccHHHH-HHhccCCcEEEEeCCHHHHHhcc--cccCCCCCe-EEEEccCCCCC-CCCCCccEEEEcCCC
Q psy8015 26 KRLDCLAL-TSNTKQST-TLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHD-YDLIADGRASF-GDNGPYDAIHVGAAY 99 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~-~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV-~~~~gD~~~~~-~~~~~fD~I~i~~~~ 99 (165)
+..++||. +|.|-+|. .|.+.+.+|.-+|..++.++.|+ +.. +...+ ++.+. +.+.+ |+..+||+|-+-...
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~-~~~~v~~~~~~-gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK-DNPRVGEFYCV-GLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC-GGCCEEEEEES--GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc-cCCCcceEEec-CHhhccCCCCcEeEEEehHhh
Confidence 46899999 99999996 66788899999999999999997 322 12343 44444 34445 445799999999888
Q ss_pred CCchH--------HHHhccccCcEEEEEec
Q psy8015 100 PRYPE--------IFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 100 ~~~p~--------~l~~~LkpgG~lvi~~~ 121 (165)
.++.+ .|.+.|+|||.+++=.+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence 77765 57899999999998543
No 207
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.24 E-value=1.3e-05 Score=65.04 Aligned_cols=107 Identities=10% Similarity=0.061 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHH-HHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCe-EEEEccCCCC--
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQST-TLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHD-YDLIADGRAS-- 83 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~-~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV-~~~~gD~~~~-- 83 (165)
..+-++.|......-+|||| ||.|-.-. .+...- .+|.-.|.++..++..+ .++.|+.++ +|.++|+++.
T Consensus 123 i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~ 202 (311)
T PF12147_consen 123 IRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS 202 (311)
T ss_pred HHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH
Confidence 33444445433466899999 99995433 333322 47888999999999987 677899986 9999999763
Q ss_pred CCC-CCCccEEEEcCCCCCchH---------HHHhccccCcEEEEEe
Q psy8015 84 FGD-NGPYDAIHVGAAYPRYPE---------IFIHHLKSGGRLVIPI 120 (165)
Q Consensus 84 ~~~-~~~fD~I~i~~~~~~~p~---------~l~~~LkpgG~lvi~~ 120 (165)
+.. ...+|.+++++-.+.+|+ .+.+.+.|||.|+..-
T Consensus 203 l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 203 LAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred hhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 322 235799999999887775 3567899999998854
No 208
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.22 E-value=6e-06 Score=72.12 Aligned_cols=98 Identities=16% Similarity=0.075 Sum_probs=78.1
Q ss_pred CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC--CCCCCCCccEEEEcCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA--SFGDNGPYDAIHVGAA 98 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~--~~~~~~~fD~I~i~~~ 98 (165)
.+..+||| ||.|-++..+|..- ..++++|++...+..|. .++.++.|+.++.+|+.. ...+.+++|.|++...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 47889999 99999999999886 47999999999888873 566789999999988742 1223578999999877
Q ss_pred CCCc-----------h---HHHHhccccCcEEEEEecCC
Q psy8015 99 YPRY-----------P---EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 99 ~~~~-----------p---~~l~~~LkpgG~lvi~~~~~ 123 (165)
.|+. | +.+.+.|||||.+.+..+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 6632 1 35789999999999876643
No 209
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.21 E-value=8.4e-06 Score=63.78 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHh--cCCCCCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHH----hcccccCCCCCeEEEEccC
Q psy8015 11 SGAVAKYVTYLS--GHSKRLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSG----GPLSSTIDPDHDYDLIADG 80 (165)
Q Consensus 11 ~~~~~~~l~~l~--~~~~~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~----~A~~~~~~~~nV~~~~gD~ 80 (165)
|-..|.++.-+. .+++|.+||=+ +++|..-.++|.+++ .|+|+|.++...+ .|+. .+||--+.+||
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----R~NIiPIl~DA 131 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----RPNIIPILEDA 131 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----STTEEEEES-T
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----CCceeeeeccC
Confidence 334444443332 23789999999 999999999999875 8999999996554 4432 36999999999
Q ss_pred CCCCC---CCCCccEEEEcCCCCCch----HHHHhccccCcEEEEEec
Q psy8015 81 RASFG---DNGPYDAIHVGAAYPRYP----EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 81 ~~~~~---~~~~fD~I~i~~~~~~~p----~~l~~~LkpgG~lvi~~~ 121 (165)
..... --+..|+||.+-+-++-. ......||+||.+++.+-
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 75321 125899999998866433 345578999999999863
No 210
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.20 E-value=1.8e-07 Score=64.53 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=38.3
Q ss_pred EEE-ccccHHHHHHhccC-----CcEEEEeCCHHHHHhc-c-cccCCC-CCeEEEEccCCCCCCC--CCCccEEEEcCCC
Q psy8015 31 LAL-TSNTKQSTTLPTFI-----PNSFNINVYYYLSGGP-L-SSTIDP-DHDYDLIADGRASFGD--NGPYDAIHVGAAY 99 (165)
Q Consensus 31 Lei-~GsG~~t~~la~~~-----~~V~aiD~~~~~~~~A-~-~~~~~~-~nV~~~~gD~~~~~~~--~~~fD~I~i~~~~ 99 (165)
||+ |..|+.|.++++.. ++++++|..+. .+.+ + .++.++ ++++++.+|..+.++. ..+||.+++++.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 689 88999999998864 27999999995 2222 1 333344 3699999998653322 3689999999863
Q ss_pred C--C---chHHHHhccccCcEEEE
Q psy8015 100 P--R---YPEIFIHHLKSGGRLVI 118 (165)
Q Consensus 100 ~--~---~p~~l~~~LkpgG~lvi 118 (165)
. . .-+.+.+.|+|||.+++
T Consensus 80 ~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 80 SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 2 1 12457889999998876
No 211
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.19 E-value=1.4e-05 Score=72.37 Aligned_cols=113 Identities=8% Similarity=-0.015 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhccC-----------------------------------------
Q psy8015 11 SGAVAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTFI----------------------------------------- 47 (165)
Q Consensus 11 ~~~~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~~----------------------------------------- 47 (165)
+...+.|+.+. .. .++..++|. ||||.+.++.|...
T Consensus 175 etlAaa~l~~a-~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 175 ENLAAAILLRS-GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred HHHHHHHHHHc-CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34455666543 43 568999999 99999987776421
Q ss_pred ---CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCC--CCCccEEEEcCCCC-Cch--H-------H---H
Q psy8015 48 ---PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGD--NGPYDAIHVGAAYP-RYP--E-------I---F 106 (165)
Q Consensus 48 ---~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~--~~~fD~I~i~~~~~-~~p--~-------~---l 106 (165)
.+++++|+++++++.|+ ++.+|+.+ +++.++|+.+.... .+.||+|+++..+. .+. + . .
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 25999999999999996 66778765 99999998764322 24699999986653 221 1 1 2
Q ss_pred HhccccCcEEEEEecCCC
Q psy8015 107 IHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 107 ~~~LkpgG~lvi~~~~~~ 124 (165)
++...+|+++++..++..
T Consensus 334 lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 334 LKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHhCCCCeEEEEeCCHH
Confidence 344459999998887543
No 212
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=3.2e-06 Score=66.06 Aligned_cols=94 Identities=12% Similarity=0.018 Sum_probs=74.2
Q ss_pred CCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCC-ccEEEEcCCCC
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGP-YDAIHVGAAYP 100 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~-fD~I~i~~~~~ 100 (165)
+.+++|| +|.|.=+..||=.. .+|+-+|...+-+..-+ .+++|++|++++++.+.+-..+ .+ ||+|.+-+..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-KKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-cccCcEEEeehccc
Confidence 5899999 99999999888332 46999999998888876 6778999999999998764432 23 99988865443
Q ss_pred --CchHHHHhccccCcEEEEEec
Q psy8015 101 --RYPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 101 --~~p~~l~~~LkpgG~lvi~~~ 121 (165)
.+-+-+...||+||.+++..+
T Consensus 147 L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 147 LNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred hHHHHHHHHHhcccCCcchhhhH
Confidence 455677899999999876544
No 213
>KOG1500|consensus
Probab=98.14 E-value=7.1e-06 Score=67.86 Aligned_cols=137 Identities=13% Similarity=0.054 Sum_probs=88.2
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC-CCCCCCCccEEEEcCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA-SFGDNGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~-~~~~~~~fD~I~i~~~ 98 (165)
..++.|||+ ||+|.++...|..+ ++|+++|.++ |++.|| .+...+ +++.++.|...+ .+| ++.|+|+....
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP--Ek~DviISEPM 252 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP--EKVDVIISEPM 252 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc--hhccEEEeccc
Confidence 368899999 99999998887765 7999999875 999997 333333 569999998876 334 57898877543
Q ss_pred CC-----CchH---HHHhccccCcEEEEEecCCCc-----eEEEEEEEccCCcEEEEEeeeEEEeeeccC--CCCCCCCC
Q psy8015 99 YP-----RYPE---IFIHHLKSGGRLVIPIGDTKQ-----QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV--KAGYSMPI 163 (165)
Q Consensus 99 ~~-----~~p~---~l~~~LkpgG~lvi~~~~~~~-----~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~--~~~~~~~~ 163 (165)
-. .+.+ ...+.|+|.|.++=.+++... ..+..=.-+...=|-......++..||.+. ..-|+.||
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPv 332 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPV 332 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhcccc
Confidence 22 2233 235899999999876664320 011100001122344555556777777763 23466776
Q ss_pred C
Q psy8015 164 I 164 (165)
Q Consensus 164 ~ 164 (165)
.
T Consensus 333 V 333 (517)
T KOG1500|consen 333 V 333 (517)
T ss_pred c
Confidence 4
No 214
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.12 E-value=3.4e-05 Score=62.21 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=69.1
Q ss_pred CCeEEEE-cccc----HHHHHHhccCC-------cEEEEeCCHHHHHhcc---cc------cC--------------C--
Q psy8015 27 RLDCLAL-TSNT----KQSTTLPTFIP-------NSFNINVYYYLSGGPL---SS------TI--------------D-- 69 (165)
Q Consensus 27 ~~~vLei-~GsG----~~t~~la~~~~-------~V~aiD~~~~~~~~A~---~~------~~--------------~-- 69 (165)
.-+||-+ |+|| .+|..|.+..+ +|+|.|+|..+++.|+ .. .. |
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999 9999 34444444331 6999999999999995 11 10 1
Q ss_pred ------CCCeEEEEccCCCCCCCCCCccEEEEcCCCCC--------chHHHHhccccCcEEEEEecC
Q psy8015 70 ------PDHDYDLIADGRASFGDNGPYDAIHVGAAYPR--------YPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 70 ------~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~--------~p~~l~~~LkpgG~lvi~~~~ 122 (165)
.++|.|...|.....+..+.||+|||-...-. +-+.+...|+|||.|++-..+
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 13578888887765534578999999876543 335688999999999996654
No 215
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.12 E-value=1.4e-05 Score=67.11 Aligned_cols=106 Identities=11% Similarity=0.005 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC-----------------------------------------cEEE
Q psy8015 15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP-----------------------------------------NSFN 52 (165)
Q Consensus 15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~-----------------------------------------~V~a 52 (165)
+.|+.+ ..-.++..++|- ||||.+.++.|.+.. ..++
T Consensus 181 aAil~l-agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 181 AAILLL-AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHH-cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 344443 344778899999 999999988887653 3789
Q ss_pred EeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCCCccEEEEcCCCC-Cch-----H--------HHHhccccCcE
Q psy8015 53 INVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNGPYDAIHVGAAYP-RYP-----E--------IFIHHLKSGGR 115 (165)
Q Consensus 53 iD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~~fD~I~i~~~~~-~~p-----~--------~l~~~LkpgG~ 115 (165)
+|+|+++++.|+ .+++|... |+|.++|+...-++.+.+|+|+++.... .+. + .+.+.++--++
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~ 339 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSR 339 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCce
Confidence 999999999996 67788765 9999999976433337899999987653 121 1 34456665566
Q ss_pred EEEEec
Q psy8015 116 LVIPIG 121 (165)
Q Consensus 116 lvi~~~ 121 (165)
.++.-.
T Consensus 340 ~v~tt~ 345 (381)
T COG0116 340 YVFTTS 345 (381)
T ss_pred EEEEcc
Confidence 666443
No 216
>KOG3191|consensus
Probab=98.11 E-value=2.7e-05 Score=59.22 Aligned_cols=96 Identities=14% Similarity=0.066 Sum_probs=71.3
Q ss_pred CCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
..-++|| ||||+.+..|++..+ ...+.|+||++++..+ .+..+ -++..++.|...++.+ ++.|+++.+..+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-~~~~~V~tdl~~~l~~-~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-VHIDVVRTDLLSGLRN-ESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-CccceeehhHHhhhcc-CCccEEEECCCcC
Confidence 6889999 999999999998753 5789999999999764 33222 3578899998877765 8899999975431
Q ss_pred -----Cch------------------H----HHHhccccCcEEEEEecCCC
Q psy8015 101 -----RYP------------------E----IFIHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 101 -----~~p------------------~----~l~~~LkpgG~lvi~~~~~~ 124 (165)
.+. + .+-+.|.|.|.++...-..+
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 121 1 13356789999999876544
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.09 E-value=2.1e-05 Score=68.84 Aligned_cols=74 Identities=7% Similarity=-0.061 Sum_probs=50.0
Q ss_pred CCCeEEEE-ccccHHHHHHhccC----------CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC---C--CCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI----------PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS---F--GDN 87 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~----------~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~---~--~~~ 87 (165)
...+|||. ||+|.+...++... ..++++|+++.+++.|+ +...+..+..+..+|.... . ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 34699999 99999987776532 36899999999999996 3333322345555553321 1 113
Q ss_pred CCccEEEEcCCC
Q psy8015 88 GPYDAIHVGAAY 99 (165)
Q Consensus 88 ~~fD~I~i~~~~ 99 (165)
+.||+|+.+...
T Consensus 111 ~~fD~IIgNPPy 122 (524)
T TIGR02987 111 DLFDIVITNPPY 122 (524)
T ss_pred CcccEEEeCCCc
Confidence 579999998543
No 218
>KOG1122|consensus
Probab=98.05 E-value=1.2e-05 Score=67.95 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=76.1
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC-CC-CCCccEEEEc
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF-GD-NGPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~-~~-~~~fD~I~i~ 96 (165)
+||.||||. +..|-=|.++|.+. |.|+|.|.+...++..+ +.++|..|-.+...|+.+.. .. .++||+|+++
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLD 319 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLD 319 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeeec
Confidence 789999999 99998888888876 68999999999998764 78899999888889985311 01 1379999999
Q ss_pred CCCCC--ch--------------------------HHHHhccccCcEEEEEec
Q psy8015 97 AAYPR--YP--------------------------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 97 ~~~~~--~p--------------------------~~l~~~LkpgG~lvi~~~ 121 (165)
+.+.- +. ....+++++||+||...-
T Consensus 320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 76642 11 124689999999998743
No 219
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.00 E-value=1.2e-05 Score=61.90 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=63.7
Q ss_pred CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHH----HHHhcc----cccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015 24 HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYY----LSGGPL----SSTIDPDHDYDLIADGRASFGDNGPYD 91 (165)
Q Consensus 24 ~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~----~~~~A~----~~~~~~~nV~~~~gD~~~~~~~~~~fD 91 (165)
.+|+++|.|+ .|.||+|..++..+ +.|+++--++- ..+..+ .++....|++.+-.+.....+ ....|
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~-pq~~d 124 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGA-PQKLD 124 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCC-CCccc
Confidence 3789999999 99999999999986 57888743332 111111 222345678877777654333 34567
Q ss_pred EEEEcCCCCCc-----h--------HHHHhccccCcEEEEEe
Q psy8015 92 AIHVGAAYPRY-----P--------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 92 ~I~i~~~~~~~-----p--------~~l~~~LkpgG~lvi~~ 120 (165)
.+.-....+.+ + ..+++.|||||.+++..
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 66664444322 1 25789999999998864
No 220
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.98 E-value=5.9e-05 Score=62.66 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=75.6
Q ss_pred CchHHHHHHHHHHhcC----------CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEE
Q psy8015 9 SVSGAVAKYVTYLSGH----------SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLI 77 (165)
Q Consensus 9 ~~~~~~~~~l~~l~~~----------~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~ 77 (165)
-.|+..-|+.+.+... .+|+++||+ |++|.+|-.|.+...+|+|||..+ |... + ...++|+...
T Consensus 184 apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~--L--~~~~~V~h~~ 258 (357)
T PRK11760 184 APSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQS--L--MDTGQVEHLR 258 (357)
T ss_pred CCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHh--h--hCCCCEEEEe
Confidence 3567777887774322 479999999 999999999999988999999544 3321 2 2346799999
Q ss_pred ccCCCCCCCCCCccEEEEcCCCC--CchHHHHhccccC--cEEEEEe
Q psy8015 78 ADGRASFGDNGPYDAIHVGAAYP--RYPEIFIHHLKSG--GRLVIPI 120 (165)
Q Consensus 78 gD~~~~~~~~~~fD~I~i~~~~~--~~p~~l~~~Lkpg--G~lvi~~ 120 (165)
+|+....+..+++|.++++.... .+-+-+.++|..| ...|+.+
T Consensus 259 ~d~fr~~p~~~~vDwvVcDmve~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 259 ADGFKFRPPRKNVDWLVCDMVEKPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred ccCcccCCCCCCCCEEEEecccCHHHHHHHHHHHHhcCcccEEEEEE
Confidence 99977555467899999987643 2233344555554 4556554
No 221
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.98 E-value=2.7e-05 Score=59.86 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=71.4
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
-.+++|||. +|+|-.+...++.+ ..|++.|++|...+.++ .+..| .++.+...|... +...||+++.+..+-
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang-v~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG-VSILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc-ceeEEeeccccC---CCcceeEEEeeceec
Confidence 469999999 99999999888876 68999999999998876 33333 478888888753 346799999986653
Q ss_pred Cch-----HHHHhccccCcEEEEEec
Q psy8015 101 RYP-----EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 101 ~~p-----~~l~~~LkpgG~lvi~~~ 121 (165)
+-+ -.|+..|+..|.-|++-.
T Consensus 154 ~~~~a~~l~~~~~~l~~~g~~vlvgd 179 (218)
T COG3897 154 NHTEADRLIPWKDRLAEAGAAVLVGD 179 (218)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEEeC
Confidence 222 238889999998888443
No 222
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=9.2e-05 Score=57.38 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC
Q psy8015 10 VSGAVAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA 82 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~ 82 (165)
-+++.-+++|+...+ +++++|+|+ +..|..+..+++.++ +|+++|+.|= + -..+|.++++|...
T Consensus 26 RSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------~--~~~~V~~iq~d~~~ 96 (205)
T COG0293 26 RSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------K--PIPGVIFLQGDITD 96 (205)
T ss_pred cchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------c--cCCCceEEeeeccC
Confidence 356777888887655 689999999 999999999999875 4999999771 1 24579999999764
Q ss_pred CC--------CCCCCccEEEEcCCCC--------Cc---------hHHHHhccccCcEEEEEec
Q psy8015 83 SF--------GDNGPYDAIHVGAAYP--------RY---------PEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 83 ~~--------~~~~~fD~I~i~~~~~--------~~---------p~~l~~~LkpgG~lvi~~~ 121 (165)
.- ....++|+|.++.+.. +. ++-..+.|+|||.+++-.=
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 21 1124579999987763 11 1224679999999999763
No 223
>KOG2361|consensus
Probab=97.95 E-value=1.5e-05 Score=63.06 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=64.8
Q ss_pred CeEEEE-ccccHHHHHHhccCC----cEEEEeCCHHHHHhcc-cccCCCCCeEEEEccCCC----CCCCCCCccEEEEcC
Q psy8015 28 LDCLAL-TSNTKQSTTLPTFIP----NSFNINVYYYLSGGPL-SSTIDPDHDYDLIADGRA----SFGDNGPYDAIHVGA 97 (165)
Q Consensus 28 ~~vLei-~GsG~~t~~la~~~~----~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~gD~~~----~~~~~~~fD~I~i~~ 97 (165)
.++||| ||.|-..-.+-+... +|++.|.+|++++..+ -.....+++.-.+.|... ...+.+.+|.|.+-.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 379999 999988876666542 6999999999999886 222223445555555432 223457899887765
Q ss_pred CCCCch--------HHHHhccccCcEEEEE
Q psy8015 98 AYPRYP--------EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 98 ~~~~~p--------~~l~~~LkpgG~lvi~ 119 (165)
.+..++ +.+.+.|||||.|++=
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 555443 4688999999999884
No 224
>KOG2671|consensus
Probab=97.81 E-value=3.3e-05 Score=63.94 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhc---------ccccCCCC-C-eEEEE
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGP---------LSSTIDPD-H-DYDLI 77 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A---------~~~~~~~~-n-V~~~~ 77 (165)
-++...-+..-+...+||+.|+|- .|||.+-...|+.+..|++.|+|-.+++.. ++++.|.. . +.+..
T Consensus 192 mDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~ 271 (421)
T KOG2671|consen 192 MDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT 271 (421)
T ss_pred cchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence 334444444444445899999999 999999998999999999999999999832 35666643 3 78888
Q ss_pred ccCCC-CCCCCCCccEEEEcCCCC------------------------CchH---------------HHHhccccCcEEE
Q psy8015 78 ADGRA-SFGDNGPYDAIHVGAAYP------------------------RYPE---------------IFIHHLKSGGRLV 117 (165)
Q Consensus 78 gD~~~-~~~~~~~fD~I~i~~~~~------------------------~~p~---------------~l~~~LkpgG~lv 117 (165)
+|-.. +|.....||+|+++.... ++|. -+.+.|..||||+
T Consensus 272 ~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv 351 (421)
T KOG2671|consen 272 ADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLV 351 (421)
T ss_pred ecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEE
Confidence 99765 555567899999984321 1221 1468999999999
Q ss_pred EEecC
Q psy8015 118 IPIGD 122 (165)
Q Consensus 118 i~~~~ 122 (165)
.-.++
T Consensus 352 ~w~p~ 356 (421)
T KOG2671|consen 352 FWLPT 356 (421)
T ss_pred EecCc
Confidence 96653
No 225
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.81 E-value=0.00019 Score=49.29 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=62.9
Q ss_pred EEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhccccc--CCCCCeEEEEccCCCC-CCCC--CCccEEEEcCCCC
Q psy8015 30 CLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPLSST--IDPDHDYDLIADGRAS-FGDN--GPYDAIHVGAAYP 100 (165)
Q Consensus 30 vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~~~~--~~~~nV~~~~gD~~~~-~~~~--~~fD~I~i~~~~~ 100 (165)
++|+ ||+|..+ .++.... .++++|.++.+++.++... .+..++.+..+|.... .+-. ..||.+.......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 9999 9999976 5555543 7999999999999865322 2221268888887652 3322 3799993333332
Q ss_pred -----CchHHHHhccccCcEEEEEecC
Q psy8015 101 -----RYPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 101 -----~~p~~l~~~LkpgG~lvi~~~~ 122 (165)
.....+.+.|+|+|.+++....
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2335678999999999887654
No 226
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.81 E-value=5.7e-05 Score=62.72 Aligned_cols=89 Identities=16% Similarity=0.058 Sum_probs=66.3
Q ss_pred CCCCCeEEEE--ccccHHHHHHhc-cCCcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cC--CCCCCCCCCccEEEEcC
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPT-FIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DG--RASFGDNGPYDAIHVGA 97 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~-~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~--~~~~~~~~~fD~I~i~~ 97 (165)
.+||++|+=+ .|.|.++..+|+ +..+|+++|++++-.+.|+ ++|.+. ++.+ |. .+... +.||.|+...
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~--~lGAd~--~i~~~~~~~~~~~~--~~~d~ii~tv 237 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK--KLGADH--VINSSDSDALEAVK--EIADAIIDTV 237 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH--HhCCcE--EEEcCCchhhHHhH--hhCcEEEECC
Confidence 4789999999 667789999998 4579999999999999885 345432 2332 22 11112 2499999988
Q ss_pred CCCCchHHHHhccccCcEEEEE
Q psy8015 98 AYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 98 ~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
. +.-.+...+.||+||++++.
T Consensus 238 ~-~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 238 G-PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred C-hhhHHHHHHHHhcCCEEEEE
Confidence 8 66666677999999999985
No 227
>KOG2730|consensus
Probab=97.79 E-value=3e-05 Score=60.62 Aligned_cols=73 Identities=8% Similarity=-0.050 Sum_probs=59.9
Q ss_pred CCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCC----CCCCccEEEEcC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFG----DNGPYDAIHVGA 97 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~----~~~~fD~I~i~~ 97 (165)
....++|. ||.|-.|..+|..+..|+++|+||--+..|| ++-.|+++ |+|++||...... ....+|++|.++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 46889999 9999999999999999999999999999996 77778865 9999999754221 234577888875
Q ss_pred C
Q psy8015 98 A 98 (165)
Q Consensus 98 ~ 98 (165)
.
T Consensus 174 p 174 (263)
T KOG2730|consen 174 P 174 (263)
T ss_pred C
Confidence 4
No 228
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.79 E-value=0.00015 Score=60.71 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=75.2
Q ss_pred CCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc----cccC-----CCCCeEEEEccCCCCCC-CCCCccE
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL----SSTI-----DPDHDYDLIADGRASFG-DNGPYDA 92 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~----~~~~-----~~~nV~~~~gD~~~~~~-~~~~fD~ 92 (165)
...+||-+ -|.|--...+-+. ..+++-+|.||+|++.++ ++.. .-++|+++..|+.+-+. ..+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 45789999 9999888888765 579999999999999996 2222 23459999999976222 2358999
Q ss_pred EEEcCCCCCchH-----------HHHhccccCcEEEEEecCC
Q psy8015 93 IHVGAAYPRYPE-----------IFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 93 I~i~~~~~~~p~-----------~l~~~LkpgG~lvi~~~~~ 123 (165)
|+++-..|+-|. -+.+.|+++|++|+..+..
T Consensus 369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 999877665442 3578999999999987753
No 229
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00016 Score=55.97 Aligned_cols=107 Identities=17% Similarity=0.138 Sum_probs=79.2
Q ss_pred HHHHHHHHHh--cCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015 13 AVAKYVTYLS--GHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG 85 (165)
Q Consensus 13 ~~~~~l~~l~--~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~ 85 (165)
..|.++.-|. .++++.+||=+ +.+|....+.|.++ |.++++|.++++.+.-- ++ ..+|+--+.+||..+..
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~--~R~Ni~PIL~DA~~P~~ 138 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE--KRPNIIPILEDARKPEK 138 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH--hCCCceeeecccCCcHH
Confidence 3444444443 24789999999 99999999999987 58999999998877542 22 24688999999975322
Q ss_pred C---CCCccEEEEcCCCCCch----HHHHhccccCcEEEEEec
Q psy8015 86 D---NGPYDAIHVGAAYPRYP----EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 86 ~---~~~fD~I~i~~~~~~~p----~~l~~~LkpgG~lvi~~~ 121 (165)
- -+..|+||.+-+-++-. ......||+||.+++.+-
T Consensus 139 Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 139 YRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred hhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 1 25789999998877533 345567999998888763
No 230
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.76 E-value=3.9e-05 Score=59.60 Aligned_cols=71 Identities=10% Similarity=-0.009 Sum_probs=53.1
Q ss_pred EEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 30 CLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 30 vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
|+|| |-=||+...|.+.. .+|+++|+++.-++.|+ +++.|+. +++++.+|+.+.+++.+..|.|++.|.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH
Confidence 6899 99999999999865 58999999999999996 6777765 49999999988776655589999987554
No 231
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.72 E-value=9.5e-05 Score=57.44 Aligned_cols=107 Identities=14% Similarity=0.019 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc-----c----ccCC--CCCeEEE
Q psy8015 11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL-----S----STID--PDHDYDL 76 (165)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~-----~----~~~~--~~nV~~~ 76 (165)
+..+.++++.+. +++++.++|+ ||.|-.....|-. +.++++||+.+...+.|+ + +.+| ..++++.
T Consensus 28 ~~~~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~ 106 (205)
T PF08123_consen 28 PEFVSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI 106 (205)
T ss_dssp HHHHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred HHHHHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence 456778888874 5899999999 9999877655543 578999999999999884 1 1234 3468889
Q ss_pred EccCCCCC-CC--CCCccEEEEcCCCC--Cch---HHHHhccccCcEEEE
Q psy8015 77 IADGRASF-GD--NGPYDAIHVGAAYP--RYP---EIFIHHLKSGGRLVI 118 (165)
Q Consensus 77 ~gD~~~~~-~~--~~~fD~I~i~~~~~--~~p---~~l~~~LkpgG~lvi 118 (165)
+||..+.. .. -..-|+||++...= .+. ...+..||+|-++|.
T Consensus 107 ~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 107 HGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp CS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 99865421 00 13469999987642 222 245678888877664
No 232
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.71 E-value=7.3e-05 Score=61.33 Aligned_cols=88 Identities=10% Similarity=-0.129 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC-
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS- 83 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~- 83 (165)
+|=+...+++.|.. .++..++|. +|.|.-|..+++.. ++|+++|.|+++++.|+ ++..+ +++++++++-.+.
T Consensus 5 ~pVll~Evl~~L~~-~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 5 QSVLLDEVVEGLNI-KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFF 82 (305)
T ss_pred cchhHHHHHHhcCc-CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHH
Confidence 45567788898854 788999999 99999998888764 79999999999999996 44332 4799999985431
Q ss_pred --CC--CCCCccEEEEcCCC
Q psy8015 84 --FG--DNGPYDAIHVGAAY 99 (165)
Q Consensus 84 --~~--~~~~fD~I~i~~~~ 99 (165)
+. ...++|.|+.+-++
T Consensus 83 ~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 83 EHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHhcCCCcccEEEEeccC
Confidence 11 22579999998544
No 233
>KOG1975|consensus
Probab=97.70 E-value=8e-05 Score=61.30 Aligned_cols=100 Identities=16% Similarity=0.062 Sum_probs=70.3
Q ss_pred CCCCeEEEE-ccccHHHH-HHhccCCcEEEEeCCHHHHHhcc--ccc-CC-----CCCeEEEEccCCC-----CCCCCCC
Q psy8015 25 SKRLDCLAL-TSNTKQST-TLPTFIPNSFNINVYYYLSGGPL--SST-ID-----PDHDYDLIADGRA-----SFGDNGP 89 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~-~la~~~~~V~aiD~~~~~~~~A~--~~~-~~-----~~nV~~~~gD~~~-----~~~~~~~ 89 (165)
++++.++++ ||-|-=.. |-.-..++++++|+.+-.+++|+ .+. .+ .-.+.|+.+|... .++..++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 689999999 99875444 33334589999999999999995 111 11 1248999999753 2222344
Q ss_pred -ccEEEEcCCCCCc----------hHHHHhccccCcEEEEEecCCC
Q psy8015 90 -YDAIHVGAAYPRY----------PEIFIHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 90 -fD~I~i~~~~~~~----------p~~l~~~LkpgG~lvi~~~~~~ 124 (165)
||+|-+-.+.|.- ...+.+.|+|||.++..+++..
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 9998887666531 1246799999999999887653
No 234
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.66 E-value=0.00025 Score=55.21 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD 91 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD 91 (165)
.+..++++|....++..|.|+ ||-+.+|..+. ...+|++.|+-.. |-.++..|......+++..|
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-------------n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-------------NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------------STTEEES-TTS-S--TT-EE
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-------------CCCEEEecCccCcCCCCcee
Confidence 466889999765556899999 99998886543 2346999998541 22355677655444568999
Q ss_pred EEEEcCCC--CCch---HHHHhccccCcEEEEEecCC
Q psy8015 92 AIHVGAAY--PRYP---EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 92 ~I~i~~~~--~~~p---~~l~~~LkpgG~lvi~~~~~ 123 (165)
+++++-++ .+++ .+..+.|||||.|.|....+
T Consensus 125 v~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 125 VAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp EEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred EEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecc
Confidence 99998665 3444 46789999999999986543
No 235
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.61 E-value=0.00012 Score=52.76 Aligned_cols=53 Identities=6% Similarity=-0.247 Sum_probs=44.2
Q ss_pred eEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCC
Q psy8015 29 DCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGR 81 (165)
Q Consensus 29 ~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~ 81 (165)
.+||+ ||.|+.+..+++... +|+++|.++++.+.++ ++..+.+|++++.....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 48999 999999999998774 6999999999999885 45556678888887654
No 236
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.58 E-value=0.00018 Score=56.87 Aligned_cols=79 Identities=8% Similarity=0.039 Sum_probs=48.4
Q ss_pred cCCCC--CeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--c----ccCCC-----CCeEEEEccCCCCCC-CC
Q psy8015 23 GHSKR--LDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--S----STIDP-----DHDYDLIADGRASFG-DN 87 (165)
Q Consensus 23 ~~~~~--~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~----~~~~~-----~nV~~~~gD~~~~~~-~~ 87 (165)
.++++ .+|||. +|-|.=|..+|.++.+|+++|.||-+....+ + +.... .+++++++|+.+-+. +.
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~ 149 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPD 149 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHS
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcC
Confidence 33454 489999 9999999999998889999999998887653 1 11122 469999999987554 35
Q ss_pred CCccEEEEcCCCCC
Q psy8015 88 GPYDAIHVGAAYPR 101 (165)
Q Consensus 88 ~~fD~I~i~~~~~~ 101 (165)
.+||+|+++..+++
T Consensus 150 ~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 150 NSFDVVYFDPMFPE 163 (234)
T ss_dssp S--SEEEE--S---
T ss_pred CCCCEEEECCCCCC
Confidence 78999999988764
No 237
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.57 E-value=0.00017 Score=52.67 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=48.8
Q ss_pred cEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCC--CCCCCccEEEEcCC-----CCCc---h-------HHHHh
Q psy8015 49 NSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASF--GDNGPYDAIHVGAA-----YPRY---P-------EIFIH 108 (165)
Q Consensus 49 ~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~--~~~~~fD~I~i~~~-----~~~~---p-------~~l~~ 108 (165)
+|+|.|+.+++++.++ +++.+.. +|++++.+-.+.. -+.+++|+++.+-+ .+.+ + +...+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 6999999999999996 6666664 5999998865421 12258999999733 2222 2 35789
Q ss_pred ccccCcEEEEEe
Q psy8015 109 HLKSGGRLVIPI 120 (165)
Q Consensus 109 ~LkpgG~lvi~~ 120 (165)
.|+|||++++.+
T Consensus 81 lL~~gG~i~iv~ 92 (140)
T PF06962_consen 81 LLKPGGIITIVV 92 (140)
T ss_dssp HEEEEEEEEEEE
T ss_pred hhccCCEEEEEE
Confidence 999999999986
No 238
>KOG2940|consensus
Probab=97.51 E-value=0.00013 Score=57.65 Aligned_cols=95 Identities=11% Similarity=0.027 Sum_probs=73.2
Q ss_pred CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc-cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC-
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL-SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP- 100 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~- 100 (165)
+....++|| ||-|+++.++-.. +++++-+|.|..|++.++ .+.-++ .++...+|-........+||.|+.+-+.|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCce-EEEEEecchhcccccccchhhhhhhhhhhh
Confidence 456889999 9999999887654 589999999999999987 432222 35667777655444568999999988776
Q ss_pred --CchH---HHHhccccCcEEEEEe
Q psy8015 101 --RYPE---IFIHHLKSGGRLVIPI 120 (165)
Q Consensus 101 --~~p~---~l~~~LkpgG~lvi~~ 120 (165)
++|. .|...|||+|.++...
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHH
Confidence 4553 6788999999988864
No 239
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.50 E-value=0.00065 Score=49.37 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=54.3
Q ss_pred CCCCeEEEE-ccccHHHHHHhc-----c-CCcEEEEeCCHHHHHhcc--cccCC--C-CCeEEEEccCCCCCCCCCCccE
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPT-----F-IPNSFNINVYYYLSGGPL--SSTID--P-DHDYDLIADGRASFGDNGPYDA 92 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~-----~-~~~V~aiD~~~~~~~~A~--~~~~~--~-~nV~~~~gD~~~~~~~~~~fD~ 92 (165)
.+..+|+|+ +|-||++..|+. . .-+|+++|.++.+.+.|+ .++++ . .+.++..++...... ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 578999999 999999999998 3 348999999999999885 33444 3 467777776543211 334555
Q ss_pred EEEcCCCCCchH
Q psy8015 93 IHVGAAYPRYPE 104 (165)
Q Consensus 93 I~i~~~~~~~p~ 104 (165)
++---+...+-+
T Consensus 103 ~vgLHaCG~Ls~ 114 (141)
T PF13679_consen 103 LVGLHACGDLSD 114 (141)
T ss_pred EEEeecccchHH
Confidence 544344444443
No 240
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0002 Score=56.63 Aligned_cols=111 Identities=17% Similarity=0.073 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeE-EEEccCCCC
Q psy8015 10 VSGAVAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDY-DLIADGRAS 83 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~gD~~~~ 83 (165)
||+---++...+... .+++++||| +.||-+|-++.+. +.+|+|+|....-+..- ++. -++|. +..-|+...
T Consensus 60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k-LR~--d~rV~~~E~tN~r~l 136 (245)
T COG1189 60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK-LRN--DPRVIVLERTNVRYL 136 (245)
T ss_pred cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh-Hhc--CCcEEEEecCChhhC
Confidence 666666676666533 479999999 9999999998887 68999999876443321 111 12222 222333322
Q ss_pred CCC--CCCccEEEEcCCCC---CchHHHHhccccCcEEEEEecCC
Q psy8015 84 FGD--NGPYDAIHVGAAYP---RYPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 84 ~~~--~~~fD~I~i~~~~~---~~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
.++ .+..|.++++-++- .+...+...|+|++-++..+-+.
T Consensus 137 ~~~~~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQ 181 (245)
T COG1189 137 TPEDFTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQ 181 (245)
T ss_pred CHHHcccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecch
Confidence 111 23678999987765 34567789999999999987654
No 241
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.48 E-value=0.00029 Score=57.09 Aligned_cols=92 Identities=17% Similarity=0.110 Sum_probs=57.1
Q ss_pred CeEEEE-ccc-cHHHHHHhccC---CcEEEEeCCHHHHHhcc--cc-cCCCC-CeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015 28 LDCLAL-TSN-TKQSTTLPTFI---PNSFNINVYYYLSGGPL--SS-TIDPD-HDYDLIADGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 28 ~~vLei-~Gs-G~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~-~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~ 98 (165)
.+|+=| +|. -..+.+|++.. ..|+++|+|+++.+.|+ .+ ..|+. +++|+.+|+.....+...||+|++.+-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 489888 542 26667787542 46999999999999996 34 44554 599999998654334568999999876
Q ss_pred CC-------CchHHHHhccccCcEEEEE
Q psy8015 99 YP-------RYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 99 ~~-------~~p~~l~~~LkpgG~lvi~ 119 (165)
.. .+.+.+.+.++||.++++=
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 64 3446788889999988874
No 242
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.44 E-value=0.001 Score=51.66 Aligned_cols=105 Identities=7% Similarity=0.000 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---C---CcEEEEeCCHHHHHhcccccCCC-CCeEEEEccCCCC--
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---I---PNSFNINVYYYLSGGPLSSTIDP-DHDYDLIADGRAS-- 83 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~---~~V~aiD~~~~~~~~A~~~~~~~-~nV~~~~gD~~~~-- 83 (165)
...+-+++-. .+.+.++|+ +-.|-.+.++|.+ . ++|+++|++.+.......+.+.. ++|++++||..+.
T Consensus 21 m~~~qeli~~-~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~ 99 (206)
T PF04989_consen 21 MVAYQELIWE-LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEI 99 (206)
T ss_dssp HHHHHHHHHH-H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHH
T ss_pred HHHHHHHHHH-hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHH
Confidence 3444455544 355999999 9888888777764 2 69999999877766554444333 5799999997531
Q ss_pred ------CCCCCCccEEEEcCCC--CCch---HHHHhccccCcEEEEE
Q psy8015 84 ------FGDNGPYDAIHVGAAY--PRYP---EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 84 ------~~~~~~fD~I~i~~~~--~~~p---~~l~~~LkpgG~lvi~ 119 (165)
.........|+.++.- .++. +.+...+++|+.+|+-
T Consensus 100 ~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 100 VDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp HHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred HHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 1112344566666652 2333 3568899999998873
No 243
>KOG3178|consensus
Probab=97.41 E-value=0.0013 Score=54.53 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=73.5
Q ss_pred CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCchH-
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPE- 104 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~- 104 (165)
-...+|+ .|.|..+..+.....+|-+++.+...+-.++- .+. +.|+.+.||..+..|+ -|+|++-.-.++.+|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~-~~~-~gV~~v~gdmfq~~P~---~daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAP-YLA-PGVEHVAGDMFQDTPK---GDAIWMKWILHDWTDE 252 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhh-hhc-CCcceecccccccCCC---cCeEEEEeecccCChH
Confidence 5889999 99999998888888899999999988876652 122 4589999999887553 479999988887665
Q ss_pred -------HHHhccccCcEEEEEec
Q psy8015 105 -------IFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 105 -------~l~~~LkpgG~lvi~~~ 121 (165)
.|++.|+|||.+++...
T Consensus 253 dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 253 DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEec
Confidence 57899999999999765
No 244
>KOG2198|consensus
Probab=97.35 E-value=0.0011 Score=55.48 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=68.9
Q ss_pred cCCCCCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC-------CCC-
Q psy8015 23 GHSKRLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA-------SFG- 85 (165)
Q Consensus 23 ~~~~~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~-------~~~- 85 (165)
..+|+++|||. +..|.-|+.|-... +.|++=|.++..+..-+ .+.+...|+.+...|+.. .+.
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 45899999999 99998887666543 38999999999888764 555555566666655432 111
Q ss_pred -CCCCccEEEEcCCCC------CchH-----------------------HHHhccccCcEEEEEe
Q psy8015 86 -DNGPYDAIHVGAAYP------RYPE-----------------------IFIHHLKSGGRLVIPI 120 (165)
Q Consensus 86 -~~~~fD~I~i~~~~~------~~p~-----------------------~l~~~LkpgG~lvi~~ 120 (165)
+...||.|+++..+. +.++ .-+++||+||+||...
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 235799999986543 1111 1358999999999974
No 245
>KOG1269|consensus
Probab=97.25 E-value=0.00042 Score=58.25 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=77.0
Q ss_pred CCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015 24 HSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 24 ~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~~fD~I~i~~~ 98 (165)
..++..++++ ||.|..+..++... .+++++|.++.-+.+++ ....+++| -.++.+|..+...++..||.+.+-.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 3678899999 99999999998876 68999999999998885 33334443 34477887777677889999999877
Q ss_pred CCCch------HHHHhccccCcEEEEEe
Q psy8015 99 YPRYP------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 99 ~~~~p------~~l~~~LkpgG~lvi~~ 120 (165)
..+.| +++++.++|||..++-.
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHH
Confidence 77666 36789999999988853
No 246
>KOG1596|consensus
Probab=97.23 E-value=0.001 Score=52.94 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHH----HhcccccCCCCCeEEEEccCCC
Q psy8015 13 AVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLS----GGPLSSTIDPDHDYDLIADGRA 82 (165)
Q Consensus 13 ~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~----~~A~~~~~~~~nV~~~~gD~~~ 82 (165)
+.+-++.-+.++ +|+.+||=+ +++|..-.+.+.++ +-|||+|.++..= ..|+. ..||--+..|+..
T Consensus 141 LAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----RtNiiPIiEDArh 216 (317)
T KOG1596|consen 141 LAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----RTNIIPIIEDARH 216 (317)
T ss_pred HHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----cCCceeeeccCCC
Confidence 344444433333 799999999 99999999999987 4799999987544 34432 4688888999864
Q ss_pred CCCC---CCCccEEEEcCCCCCchH----HHHhccccCcEEEEEec
Q psy8015 83 SFGD---NGPYDAIHVGAAYPRYPE----IFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 83 ~~~~---~~~fD~I~i~~~~~~~p~----~l~~~LkpgG~lvi~~~ 121 (165)
...- -+-.|+||.+-+-+.... .....||+||-+++.+-
T Consensus 217 P~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred chheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 3221 145799999877664322 34578999999999864
No 247
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.17 E-value=0.0029 Score=52.39 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=65.7
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcc--cccCCCCCeEE--EEccCCCC---CCC---C
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPL--SSTIDPDHDYD--LIADGRAS---FGD---N 87 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~--~~~~~~~nV~~--~~gD~~~~---~~~---~ 87 (165)
.++..++|+ ||+|.-+..|.+.. -+.+++|+|.++++.+. +.....+++++ +.||-.++ ++. .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 567799999 99998876655432 25899999999999884 44234566666 78875443 211 1
Q ss_pred CCccEEEE-cCCCCCchH--------HHHh-ccccCcEEEEEec
Q psy8015 88 GPYDAIHV-GAAYPRYPE--------IFIH-HLKSGGRLVIPIG 121 (165)
Q Consensus 88 ~~fD~I~i-~~~~~~~p~--------~l~~-~LkpgG~lvi~~~ 121 (165)
....+++. +.+..+++. .+.+ .|+|||.|++-+.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 23455554 445666542 4556 7999999999765
No 248
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.17 E-value=0.0005 Score=58.08 Aligned_cols=96 Identities=9% Similarity=0.019 Sum_probs=67.9
Q ss_pred CCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCCC--eEEEEccCCCCCC-CCCCccEEEEcC
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPDH--DYDLIADGRASFG-DNGPYDAIHVGA 97 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~n--V~~~~gD~~~~~~-~~~~fD~I~i~~ 97 (165)
.-++||. +|||.=+...+.- ..+|++-|+|+++++..+ ++..++++ +++.+.|+...+. ....||+|=++.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 4589999 9999999888876 268999999999999985 44455544 8999999876542 357899999985
Q ss_pred CCC--CchHHHHhccccCcEEEEEecC
Q psy8015 98 AYP--RYPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 98 ~~~--~~p~~l~~~LkpgG~lvi~~~~ 122 (165)
--. .+.+..++.++.||.|.+...+
T Consensus 130 fGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 130 FGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred CCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 433 3447778999999999997654
No 249
>KOG3045|consensus
Probab=97.14 E-value=0.0025 Score=51.26 Aligned_cols=95 Identities=12% Similarity=0.072 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA 92 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~ 92 (165)
+.++++++........|.|+ ||-+-+|. ..-.+|++.|+-+ -|=+++..|..+...++++.|+
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-------------~~~~V~~cDm~~vPl~d~svDv 231 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-------------VNERVIACDMRNVPLEDESVDV 231 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-------------CCCceeeccccCCcCccCcccE
Confidence 45788888764556789999 99886655 4557899999743 1345566776664455789999
Q ss_pred EEEcCCC--CCc---hHHHHhccccCcEEEEEecCCC
Q psy8015 93 IHVGAAY--PRY---PEIFIHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 93 I~i~~~~--~~~---p~~l~~~LkpgG~lvi~~~~~~ 124 (165)
++.+-+. .++ ..+..+.|+|||.++|....+.
T Consensus 232 aV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 232 AVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred EEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 9887554 233 3577899999999999877654
No 250
>KOG3987|consensus
Probab=97.12 E-value=6.7e-05 Score=58.39 Aligned_cols=104 Identities=10% Similarity=0.077 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCC
Q psy8015 11 SGAVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDN 87 (165)
Q Consensus 11 ~~~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~ 87 (165)
+.+.++++..-.+. +...++||+ +|.|-.|..++....+|+|.|.|..|..+-+.+ +. || +... +....+
T Consensus 95 e~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk--~y-nV--l~~~--ew~~t~ 167 (288)
T KOG3987|consen 95 EEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK--NY-NV--LTEI--EWLQTD 167 (288)
T ss_pred HHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc--CC-ce--eeeh--hhhhcC
Confidence 35777777654221 234799999 999999999999999999999999999866432 22 21 1111 111112
Q ss_pred CCccEEEEcCCCC------CchHHHHhcccc-CcEEEEEec
Q psy8015 88 GPYDAIHVGAAYP------RYPEIFIHHLKS-GGRLVIPIG 121 (165)
Q Consensus 88 ~~fD~I~i~~~~~------~~p~~l~~~Lkp-gG~lvi~~~ 121 (165)
-+||+|.+-.... .+.+.++..|+| +||+++..-
T Consensus 168 ~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred ceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence 3689887754332 344678889999 899888653
No 251
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.11 E-value=0.0021 Score=50.96 Aligned_cols=96 Identities=14% Similarity=0.065 Sum_probs=53.9
Q ss_pred CCCeEEEEcccc---HHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC--CCccEEEEcCC
Q psy8015 26 KRLDCLALTSNT---KQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN--GPYDAIHVGAA 98 (165)
Q Consensus 26 ~~~~vLei~GsG---~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~--~~fD~I~i~~~ 98 (165)
.|+++|=+ |-. .++..+.....+|+-+|+|+++++..+ .++.|++ ++.++.|..+++|+. +.||++|.+..
T Consensus 44 ~gk~il~l-GDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFL-GDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEE-S-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE---
T ss_pred cCCEEEEE-cCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 57888877 555 344445555679999999999999886 5667876 999999999988864 89999999755
Q ss_pred CCC-----chHHHHhccccCc-EEEEEecCC
Q psy8015 99 YPR-----YPEIFIHHLKSGG-RLVIPIGDT 123 (165)
Q Consensus 99 ~~~-----~p~~l~~~LkpgG-~lvi~~~~~ 123 (165)
..- ......+.||.-| ..++..+..
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 431 1123456777666 666666543
No 252
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.10 E-value=0.0011 Score=50.70 Aligned_cols=51 Identities=4% Similarity=-0.081 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL 64 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~ 64 (165)
.+..+++.... .+|+.|||- +|||..+....++..+.+++|++++.++.|+
T Consensus 179 ~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 179 ELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhhh--ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 45677887764 689999999 9999999888888899999999999999874
No 253
>KOG1709|consensus
Probab=97.08 E-value=0.0038 Score=49.00 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=68.8
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccC-CCCCeEEEEcc---CCCCCCCCCCccEEEEcCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTI-DPDHDYDLIAD---GRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~-~~~nV~~~~gD---~~~~~~~~~~fD~I~i~~~ 98 (165)
.+|.|||+| -|-|.....+-..- .+=+-+|.+|+..+.-|.... ..+||....|- +...++ ++.||-|+-+.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~-d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLP-DKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcccc-ccCcceeEeech
Confidence 689999999 99998887665542 345668999999987652221 24688888874 444444 356999999866
Q ss_pred CCCc------hHHHHhccccCcEEEEEec
Q psy8015 99 YPRY------PEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 99 ~~~~------p~~l~~~LkpgG~lvi~~~ 121 (165)
.+.+ .+.+.++|||+|.+-..=+
T Consensus 179 ~e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred hhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 4433 3567899999998766433
No 254
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.07 E-value=0.0024 Score=50.03 Aligned_cols=76 Identities=9% Similarity=-0.038 Sum_probs=63.1
Q ss_pred CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~~~ 98 (165)
..+.+++|| |-=+|++..|-+. +..+++.|+++..++.|. +++.++ +.+++..+|+...+...+.+|.+++.|.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 457779999 9999999998875 468999999999999994 555555 4699999999877766678999999876
Q ss_pred CC
Q psy8015 99 YP 100 (165)
Q Consensus 99 ~~ 100 (165)
-.
T Consensus 95 GG 96 (226)
T COG2384 95 GG 96 (226)
T ss_pred cH
Confidence 54
No 255
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.05 E-value=0.0043 Score=54.15 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCC
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGR 81 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~ 81 (165)
+.+.+++..+....+.++|+|- ||||.+-...+... ...++.|+++..+..|+ +--+|.+ ++...++|..
T Consensus 172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl 251 (489)
T COG0286 172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL 251 (489)
T ss_pred HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence 4444444444333678899999 99998776666654 24899999999999996 2223444 5677788765
Q ss_pred CCC-C----CCCCccEEEEcCCCC-------C--------------ch----------HHHHhccccCcEEEEEecC
Q psy8015 82 ASF-G----DNGPYDAIHVGAAYP-------R--------------YP----------EIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 82 ~~~-~----~~~~fD~I~i~~~~~-------~--------------~p----------~~l~~~LkpgG~lvi~~~~ 122 (165)
... . ..+.||.|+.+.... . .+ ..+...|+|||+..+++..
T Consensus 252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 432 2 236799998874432 0 00 1367899999987776653
No 256
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.99 E-value=0.0029 Score=49.42 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcC---CC----CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC
Q psy8015 13 AVAKYVTYLSGH---SK----RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF 84 (165)
Q Consensus 13 ~~~~~l~~l~~~---~~----~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~ 84 (165)
....+++||... .+ .-++||| |=+.+....-..... |++||+++.- -++..-.|..-....
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fd-vt~IDLns~~--------~~I~qqDFm~rplp~-- 99 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFD-VTRIDLNSQH--------PGILQQDFMERPLPK-- 99 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCcee-eEEeecCCCC--------CCceeeccccCCCCC--
Confidence 344566666543 11 2599999 776666554444445 9999998711 122222222222111
Q ss_pred CCCCCccEEEEcCCCCCchH---------HHHhccccCcE-----EEEEec
Q psy8015 85 GDNGPYDAIHVGAAYPRYPE---------IFIHHLKSGGR-----LVIPIG 121 (165)
Q Consensus 85 ~~~~~fD~I~i~~~~~~~p~---------~l~~~LkpgG~-----lvi~~~ 121 (165)
.+.+.||+|.++-....+|+ .+.+.|+|+|. |+++.+
T Consensus 100 ~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 100 NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 13578999999988887774 46789999999 888765
No 257
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.98 E-value=0.0041 Score=50.30 Aligned_cols=78 Identities=6% Similarity=-0.125 Sum_probs=46.6
Q ss_pred CCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~~~~fD~I~i~~~ 98 (165)
...+|||+ +|+|..+-.+... ..+++++|.|+.|.+.++ ++... ..+.... .+......+..+.|.|++...
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccccCCCCcEEEEehh
Confidence 45799999 9998644333332 358999999999999986 22211 1111111 111111112234599999988
Q ss_pred CCCchH
Q psy8015 99 YPRYPE 104 (165)
Q Consensus 99 ~~~~p~ 104 (165)
+.++++
T Consensus 112 L~EL~~ 117 (274)
T PF09243_consen 112 LNELPS 117 (274)
T ss_pred hhcCCc
Confidence 776663
No 258
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.88 E-value=0.003 Score=52.01 Aligned_cols=93 Identities=9% Similarity=-0.068 Sum_probs=58.5
Q ss_pred CCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 25 SKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 25 ~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
.++++||=. .+.|..+..+|+..+ +|+++|.+++..+.|+ ++|.+.+ .....|..+.....+.||+||-....
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~--~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR--EMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH--HcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 478999877 445566667777653 6999999999988875 3454321 11111111111112359988876554
Q ss_pred CCchHHHHhccccCcEEEEE
Q psy8015 100 PRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi~ 119 (165)
+..-+...+.|++||+++..
T Consensus 246 ~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 246 PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred HHHHHHHHHHhhcCCEEEEE
Confidence 44445677999999998874
No 259
>PRK11524 putative methyltransferase; Provisional
Probab=96.88 E-value=0.0027 Score=51.46 Aligned_cols=51 Identities=8% Similarity=-0.101 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015 12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL 64 (165)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~ 64 (165)
.+..+++.... .+|+.|||- +|||..+....++..+.+++|++++.++.|+
T Consensus 196 ~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~ 247 (284)
T PRK11524 196 ALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGL 247 (284)
T ss_pred HHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHH
Confidence 34566666663 589999999 9999999888888899999999999999995
No 260
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.77 E-value=0.014 Score=47.28 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=68.7
Q ss_pred CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--ccc----------------------------C-------
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SST----------------------------I------- 68 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~----------------------------~------- 68 (165)
..+||=- ||.|-++-.+|...-.|.+.|.|--|+=..+ ++. .
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p 136 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP 136 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence 5789999 9999999999999889999999999865432 110 0
Q ss_pred -----CCCCeEEEEccCCCCCCCC---CCccEEEEcCCCC------CchHHHHhccccCcEEEEEecC
Q psy8015 69 -----DPDHDYDLIADGRASFGDN---GPYDAIHVGAAYP------RYPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 69 -----~~~nV~~~~gD~~~~~~~~---~~fD~I~i~~~~~------~~p~~l~~~LkpgG~lvi~~~~ 122 (165)
...|.....||-.+...+. +.||+|+...-.. ++.+.+.+.||||| +.|.+|+
T Consensus 137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP 203 (270)
T PF07942_consen 137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP 203 (270)
T ss_pred ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence 1224666777766554444 7899987764332 23467889999999 6777775
No 261
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.77 E-value=0.0024 Score=55.44 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=54.2
Q ss_pred CeEEEE-ccccHHHHHHhccCCcEEEE---eCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC-Cc
Q psy8015 28 LDCLAL-TSNTKQSTTLPTFIPNSFNI---NVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP-RY 102 (165)
Q Consensus 28 ~~vLei-~GsG~~t~~la~~~~~V~ai---D~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~-~~ 102 (165)
..+||+ ||+|.+++.|....=.+.++ |..+..++.|-.+ |+.-.--+.+.-.-.+ +...||.|.+....- ..
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR--Gvpa~~~~~~s~rLPf-p~~~fDmvHcsrc~i~W~ 195 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER--GVPAMIGVLGSQRLPF-PSNAFDMVHCSRCLIPWH 195 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc--CcchhhhhhccccccC-Cccchhhhhcccccccch
Confidence 569999 99999999887543222222 3444455555212 4332111222222233 357899999975542 22
Q ss_pred ------hHHHHhccccCcEEEEEec
Q psy8015 103 ------PEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 103 ------p~~l~~~LkpgG~lvi~~~ 121 (165)
.-++-+.|||||.++..-.
T Consensus 196 ~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 196 PNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hcccceeehhhhhhccCceEEecCC
Confidence 2256799999999988654
No 262
>KOG1253|consensus
Probab=96.76 E-value=0.00059 Score=58.93 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=76.8
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCC----CCCCccEE
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFG----DNGPYDAI 93 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~----~~~~fD~I 93 (165)
.++-+|||. ++||.-+...|+.. ++|++-|.++..++..+ .+..+.++ |+..++|+...+- ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 578899999 99999999888864 68999999999999664 44434544 7788888854321 23689999
Q ss_pred EEc--CCCCCchHHHHhccccCcEEEEEecC
Q psy8015 94 HVG--AAYPRYPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 94 ~i~--~~~~~~p~~l~~~LkpgG~lvi~~~~ 122 (165)
-++ ++...+.|..++.++.||.|.+.+.+
T Consensus 188 DLDPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 188 DLDPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ecCCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 998 45557778888999999999998754
No 263
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.0043 Score=52.02 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=74.5
Q ss_pred CCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCC-
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAY- 99 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~- 99 (165)
..+|+|. +|||.=+..+|.-.+ +|+.=|+||+.++.++ .+.....+...++.|+...+.+ ...||+|=++.--
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPFGS 132 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPFGS 132 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCCCC
Confidence 6899999 999999998887664 6999999999999995 4433355778888888665543 4789999887433
Q ss_pred -CCchHHHHhccccCcEEEEEecC
Q psy8015 100 -PRYPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 100 -~~~p~~l~~~LkpgG~lvi~~~~ 122 (165)
.-+.+..++..+.||.|-+...+
T Consensus 133 PaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 133 PAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred CchHHHHHHHHhhcCCEEEEEecc
Confidence 34447778899999999887654
No 264
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.60 E-value=0.0037 Score=51.50 Aligned_cols=88 Identities=7% Similarity=-0.117 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-C-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC-
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-I-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS- 83 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~- 83 (165)
+|=+....+++|.. .++...+|. -|.|--|..+... - ++|+++|.|+++++.|+ ++.. -+++.+++++-.+.
T Consensus 5 ~PVll~Evl~~L~~-~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 5 IPVLLKEVLEALNP-KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLD 82 (310)
T ss_dssp --TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHH
T ss_pred ecccHHHHHHhhCc-CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHH
Confidence 34467788899964 889999999 8888777666543 3 79999999999999885 4433 35799999985321
Q ss_pred -----CCCCCCccEEEEcCCC
Q psy8015 84 -----FGDNGPYDAIHVGAAY 99 (165)
Q Consensus 84 -----~~~~~~fD~I~i~~~~ 99 (165)
......+|.|+++-++
T Consensus 83 ~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHccCCCccCEEEEcccc
Confidence 1123579999998544
No 265
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=96.47 E-value=0.012 Score=45.96 Aligned_cols=106 Identities=10% Similarity=0.012 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccH--HHHHHh---c-cCCcEEEEeCCHHHHHhc-c-cccCCCCC-eEEEEccCCC
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTK--QSTTLP---T-FIPNSFNINVYYYLSGGP-L-SSTIDPDH-DYDLIADGRA 82 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~--~t~~la---~-~~~~V~aiD~~~~~~~~A-~-~~~~~~~n-V~~~~gD~~~ 82 (165)
.++.++..|..=-..+.++|+ ++.|. .|..|| + .++++++|-.+++-.... + +...+..+ ++|+.|+..+
T Consensus 28 ~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e 107 (218)
T PF07279_consen 28 GVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE 107 (218)
T ss_pred CHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence 366777777642345778899 55332 333333 2 358999998887765444 3 66667655 7999998643
Q ss_pred -CCCCCCCccEEEEcCCCCCchHHHHhccc--cCcEEEE
Q psy8015 83 -SFGDNGPYDAIHVGAAYPRYPEIFIHHLK--SGGRLVI 118 (165)
Q Consensus 83 -~~~~~~~fD~I~i~~~~~~~p~~l~~~Lk--pgG~lvi 118 (165)
.++.....|.++++.-..+.-..+++.++ |.|-+|+
T Consensus 108 ~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 108 EVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred HHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEE
Confidence 45566789999999998777755555554 4565444
No 266
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.47 E-value=0.001 Score=46.88 Aligned_cols=85 Identities=12% Similarity=0.002 Sum_probs=58.4
Q ss_pred cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC------CCCCCCCCccEEEEcCCCCCchHHHH
Q psy8015 35 SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR------ASFGDNGPYDAIHVGAAYPRYPEIFI 107 (165)
Q Consensus 35 GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~------~~~~~~~~fD~I~i~~~~~~~p~~l~ 107 (165)
|.|..+..+|+.. .+|+++|.+++-.+.++ ++|.+. ++..+-. ..+.....+|++|-..+.+...+..+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~--~~Ga~~--~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~ 76 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAK--ELGADH--VIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI 76 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHH--HTTESE--EEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHH--hhcccc--cccccccccccccccccccccceEEEEecCcHHHHHHHH
Confidence 5688898899876 58999999999988885 344322 2222211 01112247999988777566667778
Q ss_pred hccccCcEEEEEecCC
Q psy8015 108 HHLKSGGRLVIPIGDT 123 (165)
Q Consensus 108 ~~LkpgG~lvi~~~~~ 123 (165)
+.|+++|++++.-...
T Consensus 77 ~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 77 KLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHEEEEEEEEEESSTS
T ss_pred HHhccCCEEEEEEccC
Confidence 9999999999865443
No 267
>PRK13699 putative methylase; Provisional
Probab=96.46 E-value=0.0087 Score=47.13 Aligned_cols=50 Identities=4% Similarity=-0.059 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL 64 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~ 64 (165)
...++++... .+|+.|||- +|||..+....++..+.+++|++++..+.|.
T Consensus 152 l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 152 SLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred HHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHH
Confidence 3445555543 589999999 9999998888888889999999999999984
No 268
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.46 E-value=0.0086 Score=49.43 Aligned_cols=92 Identities=11% Similarity=-0.022 Sum_probs=56.1
Q ss_pred CCCCeEEEE-c-cccHHHHHHhccCC-cEEEEeC---CHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015 25 SKRLDCLAL-T-SNTKQSTTLPTFIP-NSFNINV---YYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei-~-GsG~~t~~la~~~~-~V~aiD~---~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~ 98 (165)
.++++||=. + +.|.++..+++..+ +|++++. +++-.+.++ ++|.+.+.....|..+ ......||+||-...
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~--~~Ga~~v~~~~~~~~~-~~~~~~~d~vid~~g 247 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE--ELGATYVNSSKTPVAE-VKLVGEFDLIIEATG 247 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH--HcCCEEecCCccchhh-hhhcCCCCEEEECcC
Confidence 578999766 3 33566666776654 8999987 566666664 3454322111111111 111246998887766
Q ss_pred CCCchHHHHhccccCcEEEEE
Q psy8015 99 YPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 99 ~~~~p~~l~~~LkpgG~lvi~ 119 (165)
.+...+...+.|++||+++..
T Consensus 248 ~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 248 VPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CHHHHHHHHHHccCCcEEEEE
Confidence 554556677999999998763
No 269
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.45 E-value=0.016 Score=47.48 Aligned_cols=88 Identities=10% Similarity=-0.033 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHH-HHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC-
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQS-TTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA- 82 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t-~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~- 82 (165)
+|=+....++.|.. .|+...+|. -|.|--| +.|.++. ++++++|.|+.+++.|+ +...+ +++.+++++-.+
T Consensus 8 ipVLl~E~i~~L~~-~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l 85 (314)
T COG0275 8 IPVLLNEVVELLAP-KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANL 85 (314)
T ss_pred cchHHHHHHHhccc-CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHH
Confidence 55677888898864 889999999 7766555 5555553 78999999999999997 44433 579999987432
Q ss_pred --CCCC--CCCccEEEEcCCC
Q psy8015 83 --SFGD--NGPYDAIHVGAAY 99 (165)
Q Consensus 83 --~~~~--~~~fD~I~i~~~~ 99 (165)
.++. .+.+|-|+.+-++
T Consensus 86 ~~~l~~~~i~~vDGiL~DLGV 106 (314)
T COG0275 86 AEALKELGIGKVDGILLDLGV 106 (314)
T ss_pred HHHHHhcCCCceeEEEEeccC
Confidence 1111 3589999998544
No 270
>KOG1331|consensus
Probab=96.38 E-value=0.0055 Score=49.68 Aligned_cols=102 Identities=18% Similarity=0.093 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA 92 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~ 92 (165)
+-+..+.+.....+..++|+ ||.|-.+-.= + .-.+++.|+...++..|+.. |. .....+|+........+||.
T Consensus 33 Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~-p-~~~~ig~D~c~~l~~~ak~~--~~--~~~~~ad~l~~p~~~~s~d~ 106 (293)
T KOG1331|consen 33 WPMVRQFLDSQPTGSVGLDVGCGNGKYLGVN-P-LCLIIGCDLCTGLLGGAKRS--GG--DNVCRADALKLPFREESFDA 106 (293)
T ss_pred cHHHHHHHhccCCcceeeecccCCcccCcCC-C-cceeeecchhhhhccccccC--CC--ceeehhhhhcCCCCCCcccc
Confidence 34555555555668999999 9999554321 1 12588999999999988633 22 26778998876666789999
Q ss_pred EEEcCCCCCch---------HHHHhccccCcEEEEEec
Q psy8015 93 IHVGAAYPRYP---------EIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 93 I~i~~~~~~~p---------~~l~~~LkpgG~lvi~~~ 121 (165)
++..+..+++- +++.+.|+|||...+.+.
T Consensus 107 ~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 107 ALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 99988888654 568899999999888765
No 271
>PHA01634 hypothetical protein
Probab=96.24 E-value=0.016 Score=41.90 Aligned_cols=70 Identities=4% Similarity=-0.179 Sum_probs=49.7
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~ 98 (165)
-.+++|+|| .+.|..+..++... ++|+++|.++.+.+..+ ++.. ||. =.+-....|+ ..++||...++..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n---nI~-DK~v~~~eW~~~Y~~~Di~~iDCe 101 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF---NIC-DKAVMKGEWNGEYEDVDIFVMDCE 101 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh---eee-eceeecccccccCCCcceEEEEcc
Confidence 478999999 99999999998764 78999999999999885 3322 211 1111112233 3578999998743
No 272
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=96.12 E-value=0.021 Score=46.13 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=60.2
Q ss_pred CCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC-C--CCCCCCCccEEEEcC
Q psy8015 24 HSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR-A--SFGDNGPYDAIHVGA 97 (165)
Q Consensus 24 ~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~-~--~~~~~~~fD~I~i~~ 97 (165)
..++++||.. +| .|..+..+|+.. .+|++++.+++..+.++ ..|.+.+-....+.. . .......+|.++-..
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAK--ELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH--HhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 4678999998 65 477777777754 47999999999888774 234422111111100 0 012235699877654
Q ss_pred CCCCchHHHHhccccCcEEEEE
Q psy8015 98 AYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 98 ~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
......+...+.|+++|+++..
T Consensus 241 g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 241 GTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCHHHHHHHHHHhhcCCEEEEE
Confidence 4444556678999999998875
No 273
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.97 E-value=0.0081 Score=48.24 Aligned_cols=97 Identities=11% Similarity=-0.058 Sum_probs=58.1
Q ss_pred CCCeEEEE-cccc-HHHHHHhccCCcEEEEeCCHHHHHhcc--cccC----------------C-----------C-CCe
Q psy8015 26 KRLDCLAL-TSNT-KQSTTLPTFIPNSFNINVYYYLSGGPL--SSTI----------------D-----------P-DHD 73 (165)
Q Consensus 26 ~~~~vLei-~GsG-~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~----------------~-----------~-~nV 73 (165)
+|.++||| ||.- |....+++.+.+++..|..+.-.+..+ ++.- | + ..|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 57899999 8865 444444556689999999988776432 1110 1 0 113
Q ss_pred -EEEEccCCCCCC--C---C-CCccEEEEcCCCC----Cch------HHHHhccccCcEEEEEecC
Q psy8015 74 -YDLIADGRASFG--D---N-GPYDAIHVGAAYP----RYP------EIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 74 -~~~~gD~~~~~~--~---~-~~fD~I~i~~~~~----~~p------~~l~~~LkpgG~lvi~~~~ 122 (165)
.++..|..+.-+ + . .+||+|+.....+ ... ..+.++|||||.|++...-
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 366788765322 1 1 2499998875443 222 3578999999999997543
No 274
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.96 E-value=0.068 Score=43.86 Aligned_cols=89 Identities=11% Similarity=-0.052 Sum_probs=56.3
Q ss_pred cCCCCCeEEEE-c-cccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 23 GHSKRLDCLAL-T-SNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 23 ~~~~~~~vLei-~-GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
..+++++||=. + +.|..+..+|+..+ +|++++.+++-.+.|+ ++|.+.+ +..+ +. ..+.+|.++.....
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~--~~Ga~~v--i~~~--~~--~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLAL--ALGAASA--GGAY--DT--PPEPLDAAILFAPA 233 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH--HhCCcee--cccc--cc--CcccceEEEECCCc
Confidence 34789999877 3 34555566666554 7999999998887774 3455432 1111 11 12358877765444
Q ss_pred CCchHHHHhccccCcEEEEE
Q psy8015 100 PRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi~ 119 (165)
....+...+.|++||++++.
T Consensus 234 ~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 234 GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred HHHHHHHHHhhCCCcEEEEE
Confidence 44445567999999999763
No 275
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.91 E-value=0.1 Score=43.68 Aligned_cols=96 Identities=8% Similarity=-0.098 Sum_probs=61.0
Q ss_pred CCCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEcc-CCC---CCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD-GRA---SFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD-~~~---~~~~~~~fD~I~i 95 (165)
..++++||.. +|+ |..+..+|+..+ +|+++|.+++..+.++.. .+...+.....+ ... .+.....+|.++-
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH-LGAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 4688999999 877 888888888765 599999999999887521 122112211111 111 1122236898876
Q ss_pred cCCCC---------------------CchHHHHhccccCcEEEEEe
Q psy8015 96 GAAYP---------------------RYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 96 ~~~~~---------------------~~p~~l~~~LkpgG~lvi~~ 120 (165)
....+ ...+..++.|+++|+++..-
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 43211 12356789999999998863
No 276
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.80 E-value=0.0078 Score=47.17 Aligned_cols=50 Identities=10% Similarity=0.001 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC----CcEEEEeCCHHHHHhcc
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPL 64 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~ 64 (165)
.+|-+..+.. ...-+++|- ||+||+...+.-+- ..|++-|+|+++++.|+
T Consensus 40 ~qR~l~~l~~-~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~ 94 (246)
T PF11599_consen 40 FQRALHYLEG-KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELAR 94 (246)
T ss_dssp HHHHHCTSSS--S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHH
T ss_pred HHHHHHhhcC-CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHH
Confidence 3444444432 445689999 99999998887653 58999999999999884
No 277
>KOG0023|consensus
Probab=95.76 E-value=0.015 Score=48.15 Aligned_cols=93 Identities=11% Similarity=-0.094 Sum_probs=62.0
Q ss_pred CCCCeEEEE--ccccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCC-eEEE-EccCCCCCCCCCCccEEEEcCC-
Q psy8015 25 SKRLDCLAL--TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDH-DYDL-IADGRASFGDNGPYDAIHVGAA- 98 (165)
Q Consensus 25 ~~~~~vLei--~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~n-V~~~-~gD~~~~~~~~~~fD~I~i~~~- 98 (165)
.||+++-=+ .|-|.++..+|+..+ +|+++|.+++--+.| ++.+|.+. +.+. ..|-.+.. .+..|.++-+..
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea-~~~LGAd~fv~~~~d~d~~~~~--~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEA-IKSLGADVFVDSTEDPDIMKAI--MKTTDGGIDTVSN 256 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHH-HHhcCcceeEEecCCHHHHHHH--HHhhcCcceeeee
Confidence 689998888 889999999999874 999999997544434 45567654 2222 11211111 134565554433
Q ss_pred -CCCchHHHHhccccCcEEEEEe
Q psy8015 99 -YPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 99 -~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
..+-.+.+.+.||++|++|..-
T Consensus 257 ~a~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 257 LAEHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred ccccchHHHHHHhhcCCEEEEEe
Confidence 4455577889999999999854
No 278
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.56 E-value=0.036 Score=44.78 Aligned_cols=68 Identities=7% Similarity=-0.178 Sum_probs=47.9
Q ss_pred eEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC--CCCccEEEEcCCCC
Q psy8015 29 DCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD--NGPYDAIHVGAAYP 100 (165)
Q Consensus 29 ~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~--~~~fD~I~i~~~~~ 100 (165)
+|+|+ ||+|.++.-+.... ..|+++|+++.+++.-+.. .++. ++.+|..+.... ...+|+++.+..+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N---~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEAN---FPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHh---CCCC-CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 69999 99999988777764 5689999999999876521 1121 456676543322 35799999876543
No 279
>KOG2352|consensus
Probab=95.48 E-value=0.16 Score=44.15 Aligned_cols=95 Identities=14% Similarity=0.042 Sum_probs=71.5
Q ss_pred CCCC-eEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhccccc-CCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 25 SKRL-DCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSST-IDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 25 ~~~~-~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~-~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
.+.. ++|.+ ||.--++..+-.-+ ..++.+|+|+-.++....+. ...+-..+...|......++++||.++--+..+
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 4556 89999 99988888777654 68999999999998775322 344558899999887666778999888766554
Q ss_pred Cc----------------hHHHHhccccCcEEEEE
Q psy8015 101 RY----------------PEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 101 ~~----------------p~~l~~~LkpgG~lvi~ 119 (165)
.. -+++.+.|++||+.+..
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 22 13568999999996654
No 280
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.35 E-value=0.073 Score=41.20 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=59.3
Q ss_pred CCCCeEEEE-ccc-cHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCCC--CCCCCCccEEEEcCC
Q psy8015 25 SKRLDCLAL-TSN-TKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRAS--FGDNGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei-~Gs-G~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~~--~~~~~~fD~I~i~~~ 98 (165)
.++++||-. +|+ |..++.+++.. .+|++++.+++..+.++ ..+..++ .....+.... ......+|.++....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 210 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK--ELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG 210 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH--HhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC
Confidence 678999988 664 66666666654 58999999988777664 2232211 1000010000 112357999987655
Q ss_pred CCCchHHHHhccccCcEEEEEec
Q psy8015 99 YPRYPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 99 ~~~~p~~l~~~LkpgG~lvi~~~ 121 (165)
.....+...+.|+++|+++..-.
T Consensus 211 ~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 211 GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CHHHHHHHHHhcccCCEEEEEcc
Confidence 43556667899999999887543
No 281
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.35 E-value=0.14 Score=41.33 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccH--HHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCC--eEEEEccCCCC--
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTK--QSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDH--DYDLIADGRAS-- 83 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~--~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~n--V~~~~gD~~~~-- 83 (165)
..|..+.|.....=..+||| ||--. .+-..|+.. .+|+-+|.+|-.+..+|.-..+.++ ..++.+|..+.
T Consensus 56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEA 135 (267)
T ss_dssp HHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHH
T ss_pred HHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHH
Confidence 45677777642144789999 66431 223343332 5899999999999999821123445 89999997531
Q ss_pred ---------CCCCCCccEEEEcCCCCCchH---------HHHhccccCcEEEEEecCC
Q psy8015 84 ---------FGDNGPYDAIHVGAAYPRYPE---------IFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 84 ---------~~~~~~fD~I~i~~~~~~~p~---------~l~~~LkpgG~lvi~~~~~ 123 (165)
+-+....=++++.+..+++++ .+.+.|.||..|++.+.+.
T Consensus 136 iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 136 ILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp HHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred HhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 111123336777777776654 5789999999999998754
No 282
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.32 E-value=0.1 Score=43.48 Aligned_cols=95 Identities=11% Similarity=0.034 Sum_probs=59.5
Q ss_pred CCCCeEEEE-ccc-cHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCCC---CCCCCCCccEEEEc
Q psy8015 25 SKRLDCLAL-TSN-TKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGRA---SFGDNGPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei-~Gs-G~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~~---~~~~~~~fD~I~i~ 96 (165)
.++.+|+=+ +|. |.++..+++.. .+|+.+|.+++.++.|+.. .+.+-+..... +... .......||++|-.
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~-~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA-GGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh-CCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 345578777 553 56666677765 5899999999999999621 12211111111 1110 11112369999987
Q ss_pred CCCCCchHHHHhccccCcEEEEEe
Q psy8015 97 AAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 97 ~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
.+.+..-+...+.++|||++++.=
T Consensus 246 ~G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 246 VGSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEe
Confidence 774444467889999999998853
No 283
>KOG1562|consensus
Probab=95.32 E-value=0.057 Score=44.26 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=70.9
Q ss_pred CCCCeEEEE-ccccHHHHHHhc--cCCcEEEEeCCHHHHHhcc--cc----cCCCCCeEEEEccCCCCCC--CCCCccEE
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPT--FIPNSFNINVYYYLSGGPL--SS----TIDPDHDYDLIADGRASFG--DNGPYDAI 93 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~--~~~~V~aiD~~~~~~~~A~--~~----~~~~~nV~~~~gD~~~~~~--~~~~fD~I 93 (165)
...++||=| -|-|-+....++ .++.+.-+|+++..++..+ +. ...-+.|.+..||+...+. ..++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 456889999 888766655444 3578999999999999885 22 2233469999999865332 25799999
Q ss_pred EEcCCCCCchH----------HHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPE----------IFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~----------~l~~~LkpgG~lvi~ 119 (165)
+.+.+.+..|. .+.+.||++|.++..
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 99988887663 467999999998875
No 284
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.24 E-value=0.073 Score=43.85 Aligned_cols=86 Identities=9% Similarity=-0.099 Sum_probs=51.8
Q ss_pred CCCCeEEEE-c-cccHHHHHHhcc---CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 25 SKRLDCLAL-T-SNTKQSTTLPTF---IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 25 ~~~~~vLei-~-GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
+++++||=+ + |.|.++..+++. ..+|+++|.+++-++.|+. ++.. ..+ .+ +.+...+|+||=....
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~--~~~~--~~~-~~----~~~~~g~d~viD~~G~ 232 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF--ADET--YLI-DD----IPEDLAVDHAFECVGG 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh--cCce--eeh-hh----hhhccCCcEEEECCCC
Confidence 678999866 3 234444555553 2479999999988887752 2321 111 11 1122248988754442
Q ss_pred ---CCchHHHHhccccCcEEEEE
Q psy8015 100 ---PRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 100 ---~~~p~~l~~~LkpgG~lvi~ 119 (165)
+...+...+.|++||++++.
T Consensus 233 ~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 233 RGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CccHHHHHHHHHhCcCCcEEEEE
Confidence 22335567999999998864
No 285
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.17 E-value=0.086 Score=42.11 Aligned_cols=94 Identities=9% Similarity=-0.046 Sum_probs=56.3
Q ss_pred CCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEc--cCCCCCCCCCCccEEEEcCC
Q psy8015 25 SKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIA--DGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g--D~~~~~~~~~~fD~I~i~~~ 98 (165)
.++++||=. .+.|..++.+|+..+ +|+++|.+++..+.|+ ++|.+.+--... +..........+|+++-...
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~--~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G 196 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELAL--SFGATALAEPEVLAERQGGLQNGRGVDVALEFSG 196 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC
Confidence 578999877 334555566666543 4999999998888775 234322110000 00001112235898876554
Q ss_pred CCCchHHHHhccccCcEEEEEe
Q psy8015 99 YPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 99 ~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
.+...+...+.|+++|+++..-
T Consensus 197 ~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 197 ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred ChHHHHHHHHHhcCCCEEEEec
Confidence 4444556679999999998743
No 286
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.08 E-value=0.098 Score=42.46 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=53.5
Q ss_pred CCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 25 SKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 25 ~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
.++++||=+ + |.|.++..+|+..+ .|+++|.+++.++.|.. ... + |..+. ....||+||=..+.+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~--~~~-----i--~~~~~--~~~g~Dvvid~~G~~ 211 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG--YEV-----L--DPEKD--PRRDYRAIYDASGDP 211 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh--ccc-----c--Chhhc--cCCCCCEEEECCCCH
Confidence 467888877 3 34566676776543 47788999888776641 111 1 11000 124689887665555
Q ss_pred CchHHHHhccccCcEEEEE
Q psy8015 101 RYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 101 ~~p~~l~~~LkpgG~lvi~ 119 (165)
...+...+.|+++|+++..
T Consensus 212 ~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HHHHHHHHhhhcCcEEEEE
Confidence 5556778999999999864
No 287
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.02 E-value=0.058 Score=44.60 Aligned_cols=94 Identities=6% Similarity=-0.046 Sum_probs=57.0
Q ss_pred CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i 95 (165)
..++++||=. + +.|..+..+|+..+ +|+++|.+++..+.++ ++|.+.+ .....|..+ .......+|+++-
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~--~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid 251 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR--EFGATHTVNSSGTDPVEAIRALTGGFGADVVID 251 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEE
Confidence 4689999977 3 33555666776654 5999999999888874 3454321 111111110 0112235898876
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
..+.+..-+..++.|++||++++.
T Consensus 252 ~~g~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 252 AVGRPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCCHHHHHHHHHHhccCCEEEEE
Confidence 544333445567899999998874
No 288
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.02 E-value=0.08 Score=43.48 Aligned_cols=77 Identities=6% Similarity=-0.072 Sum_probs=40.3
Q ss_pred CeEEEE-ccccHH-HHHHhccCC-cEEEEeCCHHHHHhcc--cccC-CCC-CeEEEEccCC----CCC-CCCCCccEEEE
Q psy8015 28 LDCLAL-TSNTKQ-STTLPTFIP-NSFNINVYYYLSGGPL--SSTI-DPD-HDYDLIADGR----ASF-GDNGPYDAIHV 95 (165)
Q Consensus 28 ~~vLei-~GsG~~-t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~-~~~-nV~~~~gD~~----~~~-~~~~~fD~I~i 95 (165)
-++||| ||+-.. ....++..+ +++|.|+|+..++.|+ .+.. +++ .|+++...-. .+. .+.+.||...|
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence 479999 766533 333334334 7999999999999996 4443 554 5888765432 222 22368999999
Q ss_pred cCCCCCchH
Q psy8015 96 GAAYPRYPE 104 (165)
Q Consensus 96 ~~~~~~~p~ 104 (165)
+..+..-.+
T Consensus 184 NPPFy~s~~ 192 (299)
T PF05971_consen 184 NPPFYSSQE 192 (299)
T ss_dssp -----SS--
T ss_pred CCccccChh
Confidence 877654333
No 289
>KOG4589|consensus
Probab=94.96 E-value=0.21 Score=38.61 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=61.3
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCC---------CCCCCCCCc
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGR---------ASFGDNGPY 90 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~---------~~~~~~~~f 90 (165)
.|+++|||+ +..|..+...-+.+ +.|.++|+-. -+-.+.+.++.+ |.. +.+ +..+.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~ki~e~l-p~r~V 137 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYRKIFEAL-PNRPV 137 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHHHHHHhC-CCCcc
Confidence 689999999 99999999888876 6899999743 112334566666 432 122 24689
Q ss_pred cEEEEcCCCC----CchH---------H----HHhccccCcEEEEEecCC
Q psy8015 91 DAIHVGAAYP----RYPE---------I----FIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 91 D~I~i~~~~~----~~p~---------~----l~~~LkpgG~lvi~~~~~ 123 (165)
|+|+.+.+.. .+.| . ....++|+|.+++=+.+.
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 9999885542 2222 1 247789999999987643
No 290
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.79 E-value=0.022 Score=46.39 Aligned_cols=68 Identities=7% Similarity=0.044 Sum_probs=52.7
Q ss_pred CCeEEEEcccc---HHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC--CCccEEEE
Q psy8015 27 RLDCLALTSNT---KQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN--GPYDAIHV 95 (165)
Q Consensus 27 ~~~vLei~GsG---~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~--~~fD~I~i 95 (165)
|++++=+ |-- .+++.|..+..+|.-+|+++.++...+ .+++|++|++.+.-|..+++|++ ..||+++-
T Consensus 153 gK~I~vv-GDDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 153 GKEIFVV-GDDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred CCeEEEE-cCchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec
Confidence 5556655 433 344556666689999999999999885 67889999999999999888863 78996544
No 291
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.77 E-value=0.21 Score=44.03 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=60.0
Q ss_pred CCCCeEEEE-ccc-cHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEcc---CC-----C---C-------
Q psy8015 25 SKRLDCLAL-TSN-TKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIAD---GR-----A---S------- 83 (165)
Q Consensus 25 ~~~~~vLei-~Gs-G~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD---~~-----~---~------- 83 (165)
.++++|+=+ +|. |-.++..|+.. .+|+++|.+++..+.++ ++|.+.+.+-..+ .. + .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae--slGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE--SMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 478999999 553 55555566554 48999999999999885 2444322211111 00 0 0
Q ss_pred -CCC-CCCccEEEEcCCCCC-----c-hHHHHhccccCcEEEEEec
Q psy8015 84 -FGD-NGPYDAIHVGAAYPR-----Y-PEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 84 -~~~-~~~fD~I~i~~~~~~-----~-p~~l~~~LkpgG~lvi~~~ 121 (165)
+.+ ...+|+++-+...+. . .++..+.+||||+++..-.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 136999988876532 3 4778899999999887543
No 292
>KOG1227|consensus
Probab=94.76 E-value=0.019 Score=47.12 Aligned_cols=97 Identities=14% Similarity=0.035 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCCCCeEEEE-ccccHHHH-HHhcc-CCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCC
Q psy8015 14 VAKYVTYLSGHSKRLDCLAL-TSNTKQST-TLPTF-IPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDN 87 (165)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~-~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~ 87 (165)
-+|++.+-. .++.|.|+ +|.||+|. -+-+. +..|+|+|.+|..++.-| ++..+. +...++.||-.. ....
T Consensus 185 K~Rv~~~sc---~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~ 260 (351)
T KOG1227|consen 185 KKRVLNTSC---DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPR 260 (351)
T ss_pred HHHhhhccc---ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCcc
Confidence 445555542 36999999 99999997 44443 468999999999999775 222221 123445677543 3345
Q ss_pred CCccEEEEcCCCC---CchHHHHhccccCcE
Q psy8015 88 GPYDAIHVGAAYP---RYPEIFIHHLKSGGR 115 (165)
Q Consensus 88 ~~fD~I~i~~~~~---~~p~~l~~~LkpgG~ 115 (165)
...|.|.++--.. .-|-. .+.|||.|-
T Consensus 261 ~~AdrVnLGLlPSse~~W~~A-~k~Lk~egg 290 (351)
T KOG1227|consen 261 LRADRVNLGLLPSSEQGWPTA-IKALKPEGG 290 (351)
T ss_pred ccchheeeccccccccchHHH-HHHhhhcCC
Confidence 6789998874332 23444 467777443
No 293
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.65 E-value=0.062 Score=44.70 Aligned_cols=93 Identities=8% Similarity=-0.097 Sum_probs=57.5
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i 95 (165)
.+++++||=. .+.|..+..+|+..+ +|+++|.+++-.+.|+ ++|.+.+ .....|..+ .... +.+|+++-
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~--~~Ga~~~i~~~~~~~~~~i~~~~~-~g~d~vid 265 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR--ELGATATVNAGDPNAVEQVRELTG-GGVDYAFE 265 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH--HcCCceEeCCCchhHHHHHHHHhC-CCCCEEEE
Confidence 4678998887 344566666676653 6999999999888774 3454321 111111100 0111 26898876
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
....+...+...+.|+++|+++..
T Consensus 266 ~~G~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 266 MAGSVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCCChHHHHHHHHHHhcCCEEEEE
Confidence 544444455667899999998874
No 294
>KOG4058|consensus
Probab=94.51 E-value=0.087 Score=39.22 Aligned_cols=105 Identities=12% Similarity=0.080 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccc--cCCC-CCeEEEEccCCCCCC
Q psy8015 11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSS--TIDP-DHDYDLIADGRASFG 85 (165)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~--~~~~-~nV~~~~gD~~~~~~ 85 (165)
..+++..+.++.. .|..+.+|+ +|.|-.-...++-+ ..-+++|+++-++..+|+. +.|. ....|..-|....
T Consensus 58 teQv~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~-- 134 (199)
T KOG4058|consen 58 TEQVENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV-- 134 (199)
T ss_pred HHHHHHHHHHccC-CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc--
Confidence 3567778888865 677899999 99998887777766 6789999999999999732 2344 3588888887652
Q ss_pred CCCCccEEEEcCCCCCch---HHHHhccccCcEEEE
Q psy8015 86 DNGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVI 118 (165)
Q Consensus 86 ~~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi 118 (165)
+..+|.-+++-++..-+| +++...+..|-+++.
T Consensus 135 dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 135 DLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred cccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 234566666666554444 466666777777665
No 295
>KOG0024|consensus
Probab=94.50 E-value=0.13 Score=42.68 Aligned_cols=94 Identities=10% Similarity=-0.064 Sum_probs=64.7
Q ss_pred CCCCeEEEE-cc-ccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccC--------CCCCCCCCCccE
Q psy8015 25 SKRLDCLAL-TS-NTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADG--------RASFGDNGPYDA 92 (165)
Q Consensus 25 ~~~~~vLei-~G-sG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~--------~~~~~~~~~fD~ 92 (165)
++|.+||=+ +| .|-.|...|+.. .+|+.+|.++..++.|+. +|.+.+....... .+.......||+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~--~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK--FGATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH--hCCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 689999999 66 477777777765 599999999999999963 5654443333321 011111245898
Q ss_pred EEEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015 93 IHVGAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 93 I~i~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
.|-....+--.+.....+|.||.+++.-
T Consensus 246 ~~dCsG~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 246 TFDCSGAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred EEEccCchHHHHHHHHHhccCCEEEEec
Confidence 8877666655556678999999966643
No 296
>KOG1501|consensus
Probab=94.45 E-value=0.051 Score=46.93 Aligned_cols=87 Identities=11% Similarity=-0.009 Sum_probs=56.7
Q ss_pred eEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC---C------CCCCCCccEEE
Q psy8015 29 DCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA---S------FGDNGPYDAIH 94 (165)
Q Consensus 29 ~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~---~------~~~~~~fD~I~ 94 (165)
.|||| ||||-++...++.+ ..|+|+|.-..|.+.|| ..+.|. +++.++.--..+ + ..-.+-||-=+
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEl 148 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTEL 148 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhh
Confidence 48999 99999999888876 68999999999999997 445564 457776533221 1 11113455444
Q ss_pred Ec-CCCCCchHHHHhccccCcE
Q psy8015 95 VG-AAYPRYPEIFIHHLKSGGR 115 (165)
Q Consensus 95 i~-~~~~~~p~~l~~~LkpgG~ 115 (165)
++ ++.+.+-...-.+++||=+
T Consensus 149 igeGalps~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 149 IGEGALPSLQHAHDMLLVDNCK 170 (636)
T ss_pred hccccchhHHHHHHHhcccCCe
Confidence 43 3556555555455555533
No 297
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=94.36 E-value=0.16 Score=41.24 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=56.4
Q ss_pred CCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEcc---CCCCCCCCCCccEEEEcC
Q psy8015 25 SKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD---GRASFGDNGPYDAIHVGA 97 (165)
Q Consensus 25 ~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD---~~~~~~~~~~fD~I~i~~ 97 (165)
.++++||-. +|. |..+..+++..+ +|++++.+++..+.++ .++.+. ++..+ ........+.+|.++-..
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~--~~g~~~--vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR--AMGADE--TVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HcCCCE--EEcCCchhhhhhhccCCCccEEEECC
Confidence 378899888 554 667666776543 6899999988887553 233322 11111 111111224599888755
Q ss_pred CCCCchHHHHhccccCcEEEEE
Q psy8015 98 AYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 98 ~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
......+..++.|+++|+++..
T Consensus 240 g~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 240 GAPAALASALRVVRPGGTVVQV 261 (339)
T ss_pred CCHHHHHHHHHHHhcCCEEEEE
Confidence 4333445678999999998874
No 298
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.11 E-value=0.16 Score=42.03 Aligned_cols=97 Identities=12% Similarity=-0.022 Sum_probs=62.6
Q ss_pred CCCCCeEEEE---ccccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCC-eEEEEccCCCC---CCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL---TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGRAS---FGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei---~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~~~---~~~~~~fD~I~i 95 (165)
.+++++||=. .|.|.++..||+..+ +++++--+++-.+.+ +++|.+. +.+...|..+. +.....+|+|+-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~--~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELL--KELGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHH--HhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 4789999988 445577777888776 887777777666544 4556543 33344432221 122246998877
Q ss_pred cCCCCCchHHHHhccccCcEEEEEecCC
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
.-..+...+ ..+.|+++|+++..-...
T Consensus 218 ~vG~~~~~~-~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 218 TVGGDTFAA-SLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCCHHHHHH-HHHHhccCCEEEEEecCC
Confidence 665555555 568999999999866544
No 299
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=93.94 E-value=0.68 Score=36.37 Aligned_cols=92 Identities=12% Similarity=-0.022 Sum_probs=57.0
Q ss_pred cCCCCCeEEEE-ccc-cHHHHHHhccC-Cc-EEEEeCCHHHHHhcccccCC-CCCeEEEEccCCCCCCCCCCccEEEEcC
Q psy8015 23 GHSKRLDCLAL-TSN-TKQSTTLPTFI-PN-SFNINVYYYLSGGPLSSTID-PDHDYDLIADGRASFGDNGPYDAIHVGA 97 (165)
Q Consensus 23 ~~~~~~~vLei-~Gs-G~~t~~la~~~-~~-V~aiD~~~~~~~~A~~~~~~-~~nV~~~~gD~~~~~~~~~~fD~I~i~~ 97 (165)
...+++++|-. +|. |..+..+|+.. .+ |++++.+++..+.++ +.| .+.+.....+ ......+|.++-..
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~--~~g~~~~~~~~~~~----~~~~~~~d~vl~~~ 167 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE--ALGPADPVAADTAD----EIGGRGADVVIEAS 167 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH--HcCCCccccccchh----hhcCCCCCEEEEcc
Confidence 34678999888 543 55666666654 35 999999988887664 223 1211111111 11234699888654
Q ss_pred CCCCchHHHHhccccCcEEEEEe
Q psy8015 98 AYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 98 ~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
......+..++.|+++|+++..-
T Consensus 168 ~~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 168 GSPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CChHHHHHHHHHhcCCcEEEEEe
Confidence 44444556679999999988743
No 300
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.91 E-value=0.28 Score=39.94 Aligned_cols=94 Identities=12% Similarity=0.032 Sum_probs=55.5
Q ss_pred CCCCCeEEEE-c-cccHHHHHHhccC-Cc-EEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC--CCCCCCCccEEEEc
Q psy8015 24 HSKRLDCLAL-T-SNTKQSTTLPTFI-PN-SFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA--SFGDNGPYDAIHVG 96 (165)
Q Consensus 24 ~~~~~~vLei-~-GsG~~t~~la~~~-~~-V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~--~~~~~~~fD~I~i~ 96 (165)
..++++||=. + +.|..+..+++.. .+ |++++.+++-.+.++ ++|.+.+ .....+... .......||+++-.
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~--~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK--ALGADFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 4679999877 3 3344445555544 35 999999998887764 3454321 111111000 11122369988765
Q ss_pred CCCCCchHHHHhccccCcEEEEE
Q psy8015 97 AAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 97 ~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
.......+...+.|+++|+++..
T Consensus 239 ~g~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 239 SGNTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCHHHHHHHHHHhhcCCEEEEE
Confidence 55444445567899999998874
No 301
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.78 E-value=0.31 Score=40.08 Aligned_cols=94 Identities=12% Similarity=0.001 Sum_probs=55.2
Q ss_pred CCCCCeEEEE-ccc-cHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEcc---CCC---CCCCCCCcc--
Q psy8015 24 HSKRLDCLAL-TSN-TKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIAD---GRA---SFGDNGPYD-- 91 (165)
Q Consensus 24 ~~~~~~vLei-~Gs-G~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD---~~~---~~~~~~~fD-- 91 (165)
..++++||=. +|+ |..+..+|+.. .+|+++|.+++..+.++ ++|.+.+ .....| ..+ .+.....+|
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~--~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK--GFGADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH--HhCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 4678999888 543 66667777765 37999999999888774 3454321 111111 000 011112344
Q ss_pred --EEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 92 --AIHVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 92 --~I~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
.|+-..+.....+...+.|++||+++..
T Consensus 242 ~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 242 GWKIFECSGSKPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred cCEEEECCCChHHHHHHHHHHhcCCeEEEE
Confidence 5654444344455567899999999764
No 302
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.69 E-value=0.39 Score=38.44 Aligned_cols=96 Identities=9% Similarity=-0.010 Sum_probs=59.2
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
.+..+|+|| ||.==++...-... ..++|+|+|..+++..+ +..++. +.++...|.....+ ..+.|+.++-=..
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~-~~~~DlaLllK~l 181 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPP-KEPADLALLLKTL 181 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHT-TSEESEEEEET-H
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCC-CCCcchhhHHHHH
Confidence 347999999 98887776555543 38999999999999986 566664 57778888876533 4678999885443
Q ss_pred CCchH-------HHHhccccCcEEEEEecCC
Q psy8015 100 PRYPE-------IFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 100 ~~~p~-------~l~~~LkpgG~lvi~~~~~ 123 (165)
|-+.. .+.+.++- =.+++..++.
T Consensus 182 p~le~q~~g~g~~ll~~~~~-~~~vVSfPtr 211 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALRS-PHVVVSFPTR 211 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSCE-SEEEEEEES-
T ss_pred HHHHHHhcchHHHHHHHhCC-CeEEEecccc
Confidence 32221 23444432 3556666543
No 303
>PLN02740 Alcohol dehydrogenase-like
Probab=93.55 E-value=0.28 Score=41.02 Aligned_cols=92 Identities=7% Similarity=-0.107 Sum_probs=57.6
Q ss_pred cCCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEcc-----CCC---CCCCCCCc
Q psy8015 23 GHSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD-----GRA---SFGDNGPY 90 (165)
Q Consensus 23 ~~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD-----~~~---~~~~~~~f 90 (165)
..+++++||=. .+.|..+..+|+..+ +|+++|.+++..+.|+ ++|.+. ++..+ ..+ .... +.+
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~--~~Ga~~--~i~~~~~~~~~~~~v~~~~~-~g~ 269 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK--EMGITD--FINPKDSDKPVHERIREMTG-GGV 269 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH--HcCCcE--EEecccccchHHHHHHHHhC-CCC
Confidence 34788999888 334555566666553 6999999999888884 345432 22111 100 1111 269
Q ss_pred cEEEEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015 91 DAIHVGAAYPRYPEIFIHHLKSG-GRLVIP 119 (165)
Q Consensus 91 D~I~i~~~~~~~p~~l~~~Lkpg-G~lvi~ 119 (165)
|+++-..+.+...+..++.+++| |++++.
T Consensus 270 dvvid~~G~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 270 DYSFECAGNVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CEEEECCCChHHHHHHHHhhhcCCCEEEEE
Confidence 98877655555555666889997 998763
No 304
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.46 E-value=0.71 Score=37.67 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=57.9
Q ss_pred cCCCCCeEEEE-ccc-cHHHHHHhccCC-c-EEEEeCCHHHHHhcccccCCCCCeE-EEEccC------CCCCCCCCCcc
Q psy8015 23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP-N-SFNINVYYYLSGGPLSSTIDPDHDY-DLIADG------RASFGDNGPYD 91 (165)
Q Consensus 23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~-~-V~aiD~~~~~~~~A~~~~~~~~nV~-~~~gD~------~~~~~~~~~fD 91 (165)
...++++||-. +|+ |..+..+|+..+ + |++++.+++..+.++ .++.+++- ...-+. ...+.....||
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~--~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAK--ELGATHTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HcCCcEEeccccccchhHHHHHHHHhCCCCCC
Confidence 34788999887 443 777777777654 5 999998888776653 23433211 111110 00112234599
Q ss_pred EEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 92 AIHVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 92 ~I~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+|+-............+.|+++|+++..
T Consensus 237 ~vld~~g~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 237 VVIECTGAESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred EEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 8886544433455668999999998764
No 305
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.25 E-value=0.27 Score=33.77 Aligned_cols=85 Identities=8% Similarity=0.021 Sum_probs=58.3
Q ss_pred ccccHHHHHHhccC---C-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCCch--
Q psy8015 34 TSNTKQSTTLPTFI---P-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPRYP-- 103 (165)
Q Consensus 34 ~GsG~~t~~la~~~---~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~~p-- 103 (165)
||.|.++..+++.. + +|+.+|.+++.++.++.+ + +.++.||+.+. + ......|.+++.......-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--~---~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--G---VEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--T---SEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--c---cccccccchhhhHHhhcCccccCEEEEccCCHHHHHH
Confidence 89999998888753 4 799999999999877532 2 67999998652 1 1235789998876543211
Q ss_pred -HHHHhccccCcEEEEEecCC
Q psy8015 104 -EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 104 -~~l~~~LkpgG~lvi~~~~~ 123 (165)
-...+.+.|..++++-..+.
T Consensus 79 ~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 79 IALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp HHHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHHHHCCCCeEEEEECCH
Confidence 23457778888888877643
No 306
>KOG1099|consensus
Probab=93.15 E-value=0.22 Score=39.69 Aligned_cols=86 Identities=16% Similarity=0.093 Sum_probs=61.1
Q ss_pred CCCeEEEE-ccccHHHHHHhccC-C----------cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--------C
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI-P----------NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--------G 85 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~-~----------~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--------~ 85 (165)
.-+||.|+ +..|..+..|++.. . +++++|+.+ |+ -++.|.-+++|....- .
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma--------PI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA--------PIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC--------ccCceEEeecccCCHhHHHHHHHHh
Confidence 45899999 99999999999742 1 389999865 21 3567888889875321 1
Q ss_pred CCCCccEEEEcCCCC-----CchH----H--------HHhccccCcEEEEEe
Q psy8015 86 DNGPYDAIHVGAAYP-----RYPE----I--------FIHHLKSGGRLVIPI 120 (165)
Q Consensus 86 ~~~~fD~I~i~~~~~-----~~p~----~--------l~~~LkpgG~lvi~~ 120 (165)
..++-|.|+++++.. ++.+ + ....|||||.+|.=+
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 235889999998764 3332 1 247899999999854
No 307
>KOG3201|consensus
Probab=93.05 E-value=0.048 Score=41.10 Aligned_cols=99 Identities=10% Similarity=-0.071 Sum_probs=60.3
Q ss_pred CCCCeEEEE-ccccHHH-HHHhccC--CcEEEEeCCHHHHHhcc-cc----cCCCCCeEEEEccCC--CCCCCCCCccEE
Q psy8015 25 SKRLDCLAL-TSNTKQS-TTLPTFI--PNSFNINVYYYLSGGPL-SS----TIDPDHDYDLIADGR--ASFGDNGPYDAI 93 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t-~~la~~~--~~V~aiD~~~~~~~~A~-~~----~~~~~nV~~~~gD~~--~~~~~~~~fD~I 93 (165)
-.|.+|||+ .|--.++ ..+|.-+ ..|.-.|=+++.++..+ .. ..+++.+.+..-+-. +...+..+||.|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 358899999 4432222 3344333 47999999999988764 21 133444444433321 122345689988
Q ss_pred EEcCCCC------CchHHHHhccccCcEEEEEecCC
Q psy8015 94 HVGAAYP------RYPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 94 ~i~~~~~------~~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
++....- .+.+.+...|+|.|+-.+..+..
T Consensus 108 laADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 108 LAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred EeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 8754331 24467889999999977765543
No 308
>KOG3115|consensus
Probab=93.01 E-value=0.34 Score=37.91 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=66.1
Q ss_pred CCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccC-------CCCCeEEEEccCCCCCCC---CCCc
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTI-------DPDHDYDLIADGRASFGD---NGPY 90 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~-------~~~nV~~~~gD~~~~~~~---~~~f 90 (165)
+.-.+.|| ||-|-+...||.+.. -+.+.|+..+..+..+ ++.+ .+.|+.+...++..-+|. .+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 44679999 999999999999873 6899998888877663 2221 277899999988654332 3444
Q ss_pred cEEEEcCCCCC--------------chHHHHhccccCcEEEEEec
Q psy8015 91 DAIHVGAAYPR--------------YPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 91 D~I~i~~~~~~--------------~p~~l~~~LkpgG~lvi~~~ 121 (165)
+-.|.-...++ +..+..-.|++||.++....
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 44554433332 22345668999999998754
No 309
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=92.91 E-value=1.1 Score=35.90 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=54.7
Q ss_pred CCCCCeEEEEccccHHHHHH---hccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 24 HSKRLDCLALTSNTKQSTTL---PTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 24 ~~~~~~vLei~GsG~~t~~l---a~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
..++++||=. |+|.++..+ ++.. .+|++++.+++..+.++ ++|.+.+.....+ .....+|+++-..+.
T Consensus 153 ~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~--~~g~~~~~~~~~~-----~~~~~~d~vid~~g~ 224 (319)
T cd08242 153 ITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR--RLGVETVLPDEAE-----SEGGGFDVVVEATGS 224 (319)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH--HcCCcEEeCcccc-----ccCCCCCEEEECCCC
Confidence 3678888766 455555444 4433 47999999998888775 2454322211111 123569988875444
Q ss_pred CCchHHHHhccccCcEEEE
Q psy8015 100 PRYPEIFIHHLKSGGRLVI 118 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi 118 (165)
....+...+.|+++|+++.
T Consensus 225 ~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 225 PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred hHHHHHHHHHhhcCCEEEE
Confidence 3444566789999999997
No 310
>KOG2360|consensus
Probab=92.67 E-value=0.17 Score=42.81 Aligned_cols=78 Identities=5% Similarity=-0.075 Sum_probs=61.0
Q ss_pred cCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC-CCC-CCCccEEE
Q psy8015 23 GHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS-FGD-NGPYDAIH 94 (165)
Q Consensus 23 ~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~-~~~-~~~fD~I~ 94 (165)
...+|.+|+|. |..|--|.++|.+. ++++|.|.+++.++.-+ ++..|.++++...+|.... .++ ....-.|+
T Consensus 210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~iL 289 (413)
T KOG2360|consen 210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTYIL 289 (413)
T ss_pred CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeEEE
Confidence 34789999999 99999999999875 69999999999888764 6677888888889998763 222 24556788
Q ss_pred EcCCCC
Q psy8015 95 VGAAYP 100 (165)
Q Consensus 95 i~~~~~ 100 (165)
++.++.
T Consensus 290 ~DpscS 295 (413)
T KOG2360|consen 290 VDPSCS 295 (413)
T ss_pred eCCCCC
Confidence 876553
No 311
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=92.63 E-value=0.54 Score=38.96 Aligned_cols=93 Identities=6% Similarity=-0.069 Sum_probs=55.4
Q ss_pred CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccC------CCCCCCCCCccEE
Q psy8015 24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADG------RASFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~------~~~~~~~~~fD~I 93 (165)
..++++||=. + +.|..++.+|+..+ +|+++|.+++-.+.++ ++|.+.+--...+. ...... ..+|.|
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~--~~ga~~~i~~~~~~~~~~~~~~~~~~-~g~d~v 258 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK--EFGATDFINPKDSDKPVSEVIREMTG-GGVDYS 258 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HcCCCcEeccccccchHHHHHHHHhC-CCCCEE
Confidence 4678999877 2 34455555666554 6999999998888774 34543221111100 001112 368988
Q ss_pred EEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSG-GRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~Lkpg-G~lvi~ 119 (165)
+-........+..++.|+++ |+++..
T Consensus 259 id~~g~~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 259 FECTGNADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred EECCCChHHHHHHHHhcccCCCEEEEE
Confidence 76544344445567889886 998875
No 312
>PRK11524 putative methyltransferase; Provisional
Probab=92.60 E-value=0.16 Score=41.07 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=37.5
Q ss_pred CCCeEEEEccCCCCC--CCCCCccEEEEcCCCCC----------------------chHHHHhccccCcEEEEEecC
Q psy8015 70 PDHDYDLIADGRASF--GDNGPYDAIHVGAAYPR----------------------YPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 70 ~~nV~~~~gD~~~~~--~~~~~fD~I~i~~~~~~----------------------~p~~l~~~LkpgG~lvi~~~~ 122 (165)
..+.+++++|+.+.+ -+.++||+|+++..... ...++.+.|||||.+++.+..
T Consensus 6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 345688999987632 22478999999865421 123578999999999997653
No 313
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=92.60 E-value=0.57 Score=37.93 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=56.0
Q ss_pred cCCCCCeEEEEc---cccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEc--cCCC---CCCCCCCccEE
Q psy8015 23 GHSKRLDCLALT---SNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIA--DGRA---SFGDNGPYDAI 93 (165)
Q Consensus 23 ~~~~~~~vLei~---GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g--D~~~---~~~~~~~fD~I 93 (165)
...++++||=.. |.|..+..+|+..+ +|++++.+++-.+.++ ++|.+.+--... +..+ ... .+.+|++
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~--~lGa~~vi~~~~~~~~~~~~~~~~-~~gvdvv 211 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK--KLGFDVAFNYKTVKSLEETLKKAS-PDGYDCY 211 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCCEEEeccccccHHHHHHHhC-CCCeEEE
Confidence 346889988553 34555566666544 7999999988777664 355533211111 1110 111 2368988
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+-..+.+ ..+..++.|+++|+++..
T Consensus 212 ~d~~G~~-~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 212 FDNVGGE-FSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EECCCHH-HHHHHHHHhCcCcEEEEe
Confidence 7544433 346678999999999864
No 314
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.53 E-value=0.29 Score=40.13 Aligned_cols=94 Identities=9% Similarity=0.007 Sum_probs=53.7
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCC--CCCCCCCCccEEEEc
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGR--ASFGDNGPYDAIHVG 96 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~--~~~~~~~~fD~I~i~ 96 (165)
..++++||=. .+.|..+..+|+..+ .|++++.+++-.+.++ ++|.+.+ .....+.. ........+|.++++
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~--~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d 235 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK--SLGAMQTFNSREMSAPQIQSVLRELRFDQLILE 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH--HcCCceEecCcccCHHHHHHHhcCCCCCeEEEE
Confidence 3578899888 334455555666543 4799999998888764 3444221 11111100 011122358844454
Q ss_pred CCC-CCchHHHHhccccCcEEEEE
Q psy8015 97 AAY-PRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 97 ~~~-~~~p~~l~~~LkpgG~lvi~ 119 (165)
..- +..-+...+.|++||++++.
T Consensus 236 ~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 236 TAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCCCHHHHHHHHHHhhcCCEEEEE
Confidence 333 33445567999999998874
No 315
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.45 E-value=0.27 Score=44.43 Aligned_cols=95 Identities=8% Similarity=-0.052 Sum_probs=60.3
Q ss_pred CCCeEEEE-ccccHHHHHHhccC--------------CcEEEEeCCH---HHHHhc-----------c-cc------cCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI--------------PNSFNINVYY---YLSGGP-----------L-SS------TID 69 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~--------------~~V~aiD~~~---~~~~~A-----------~-~~------~~~ 69 (165)
+.-+|||+ =|+|+......+.. =+.+++|.+| +-+..+ + +. ..|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 44789999 99998765444211 1689999754 111111 1 00 012
Q ss_pred C-------C--CeEEEEccCCCCCCCC-CCccEEEEcCCCC-Cch--------HHHHhccccCcEEEEEe
Q psy8015 70 P-------D--HDYDLIADGRASFGDN-GPYDAIHVGAAYP-RYP--------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 70 ~-------~--nV~~~~gD~~~~~~~~-~~fD~I~i~~~~~-~~p--------~~l~~~LkpgG~lvi~~ 120 (165)
. . ++++..||+.+.++.. ..||++|.++-.+ .-| ..+.+.++|||++.-..
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1 1 3567889987655543 5699999997554 333 35778999999998764
No 316
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.11 E-value=0.66 Score=37.98 Aligned_cols=94 Identities=9% Similarity=-0.103 Sum_probs=57.5
Q ss_pred CCCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i 95 (165)
.+++++||=. +| .|..++.+|+..+ +|+++|.+++..+.++ .+|.+.+ .....+... .......+|.++-
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~--~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK--EYGATDIVDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HcCCceEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 4678999888 33 4566666676543 5999999998877775 3444321 111111100 1112246998886
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
...........++.|+++|+++..
T Consensus 242 ~~g~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 242 AGGGQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCCCHHHHHHHHHHhhcCCEEEEe
Confidence 544444556678999999998864
No 317
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=91.98 E-value=0.76 Score=37.29 Aligned_cols=95 Identities=14% Similarity=0.053 Sum_probs=59.0
Q ss_pred cCCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015 23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV 95 (165)
Q Consensus 23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i 95 (165)
...++++||-. +| .|..++.+|+.. .+|+++..+++..+.++ .++.+.+ .....+..+ .......+|.++-
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~--~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAR--ELGADDTINVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHH--HhCCCEEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence 34688999998 54 377777777764 58999988888777663 2333221 111111101 1112345998887
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
...........++.|+++|+++..
T Consensus 234 ~~g~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 234 ATGNPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEE
Confidence 644444556678999999998864
No 318
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=91.96 E-value=0.91 Score=37.55 Aligned_cols=93 Identities=14% Similarity=0.049 Sum_probs=53.7
Q ss_pred CCCCeEEEE--ccccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015 25 SKRLDCLAL--TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR 101 (165)
Q Consensus 25 ~~~~~vLei--~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~ 101 (165)
.++++||=. .+.|..+..+|+..+ +|+.++.+++..+.+. +.+|.+.+ +...+..........+|.++-......
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~-~~~Ga~~~-i~~~~~~~~~~~~~~~D~vid~~g~~~ 256 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEAL-EHLGADDY-LVSSDAAEMQEAADSLDYIIDTVPVFH 256 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HhcCCcEE-ecCCChHHHHHhcCCCcEEEECCCchH
Confidence 578899877 445666666777654 6888888876554442 23454321 111111000001135898876544334
Q ss_pred chHHHHhccccCcEEEEE
Q psy8015 102 YPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 102 ~p~~l~~~LkpgG~lvi~ 119 (165)
..+...+.|+++|+++..
T Consensus 257 ~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 257 PLEPYLSLLKLDGKLILM 274 (357)
T ss_pred HHHHHHHHhccCCEEEEE
Confidence 445567999999998874
No 319
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.89 E-value=0.87 Score=37.02 Aligned_cols=92 Identities=5% Similarity=-0.034 Sum_probs=54.4
Q ss_pred CCC--CeEEEE-c--cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEE-ccCCC---CCCCCCCccEE
Q psy8015 25 SKR--LDCLAL-T--SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLI-ADGRA---SFGDNGPYDAI 93 (165)
Q Consensus 25 ~~~--~~vLei-~--GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~-gD~~~---~~~~~~~fD~I 93 (165)
.++ ++||=. . |.|..+..+|+..+ +|++++.+++..+.++. .+|.+.+-... .+..+ .... ..+|++
T Consensus 151 ~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~-~lGa~~vi~~~~~~~~~~i~~~~~-~gvd~v 228 (345)
T cd08293 151 TPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS-ELGFDAAINYKTDNVAERLRELCP-EGVDVY 228 (345)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-hcCCcEEEECCCCCHHHHHHHHCC-CCceEE
Confidence 454 788766 3 45566666777654 69999999887765531 24554321111 11100 0111 469988
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+-...... .+..++.|+++|+++..
T Consensus 229 id~~g~~~-~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 229 FDNVGGEI-SDTVISQMNENSHIILC 253 (345)
T ss_pred EECCCcHH-HHHHHHHhccCCEEEEE
Confidence 75443333 46678999999998864
No 320
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.80 E-value=0.45 Score=39.36 Aligned_cols=93 Identities=10% Similarity=-0.049 Sum_probs=56.9
Q ss_pred CCCCCeEEEE-c--cccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeE-EEEc-cCCC---CCCCCCCccEEE
Q psy8015 24 HSKRLDCLAL-T--SNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDY-DLIA-DGRA---SFGDNGPYDAIH 94 (165)
Q Consensus 24 ~~~~~~vLei-~--GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~g-D~~~---~~~~~~~fD~I~ 94 (165)
..++++||=. + |.|..+..+|+..+ +|++++.+++-.+.++ +++|.+.+- .... |..+ .... +.+|+++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~-~~lGa~~vi~~~~~~~~~~~i~~~~~-~gvD~v~ 233 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK-NKLGFDEAFNYKEEPDLDAALKRYFP-EGIDIYF 233 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HhcCCCEEEECCCcccHHHHHHHHCC-CCcEEEE
Confidence 4688999877 5 36677777777654 7999999888776553 134543221 1111 1111 1111 3589887
Q ss_pred EcCCCCCchHHHHhccccCcEEEEE
Q psy8015 95 VGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 95 i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
-..+. ...+..++.|++||+++..
T Consensus 234 d~vG~-~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 234 DNVGG-DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred ECCCH-HHHHHHHHHhccCCEEEEE
Confidence 54433 3445678999999998863
No 321
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=91.71 E-value=0.6 Score=37.97 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=54.3
Q ss_pred cCCCCCeEEEE--ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCCCCCCCCCccEEEEcCC
Q psy8015 23 GHSKRLDCLAL--TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 23 ~~~~~~~vLei--~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~~~~~~~~fD~I~i~~~ 98 (165)
...++++||=. .+.|..+..+|+.. .+|+.++.+++-.+.++ ++|.+.+ .....+..........+|+++-..+
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g 237 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR--KLGAHHYIDTSKEDVAEALQELGGAKLILATAP 237 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH--HcCCcEEecCCCccHHHHHHhcCCCCEEEECCC
Confidence 34678888766 23344445555544 37999999988777773 3454221 1111111010111135898885433
Q ss_pred CCCchHHHHhccccCcEEEEE
Q psy8015 99 YPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 99 ~~~~p~~l~~~LkpgG~lvi~ 119 (165)
.....+...+.|+++|+++..
T Consensus 238 ~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 238 NAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred chHHHHHHHHHcccCCEEEEE
Confidence 344455667999999998864
No 322
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=91.70 E-value=0.93 Score=38.31 Aligned_cols=93 Identities=6% Similarity=-0.033 Sum_probs=55.2
Q ss_pred cCCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEc---cCCC---CCCCCCCccE
Q psy8015 23 GHSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIA---DGRA---SFGDNGPYDA 92 (165)
Q Consensus 23 ~~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g---D~~~---~~~~~~~fD~ 92 (165)
...++++||=. .+.|..+..+|+..+ .|++.|.+++..+.|+ ++|.+ .+... +..+ .......+|+
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~--~~Ga~--~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQAR--SFGCE--TVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH--HcCCe--EEecCCcccHHHHHHHHcCCCCCcE
Confidence 34678888776 334455555666543 4677789888888775 34543 12211 1101 1112235898
Q ss_pred EEEcCCCC--------------CchHHHHhccccCcEEEEE
Q psy8015 93 IHVGAAYP--------------RYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 93 I~i~~~~~--------------~~p~~l~~~LkpgG~lvi~ 119 (165)
++-..+.+ ...+...+.+++||++++.
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 87655543 2345667999999999884
No 323
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.45 E-value=0.73 Score=38.29 Aligned_cols=94 Identities=9% Similarity=-0.083 Sum_probs=57.0
Q ss_pred CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccC--CC---CCCCCCCccEE
Q psy8015 24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADG--RA---SFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~--~~---~~~~~~~fD~I 93 (165)
.+++++||=. + +.|..+..+|+..+ +|+++|.+++..+.|+ ++|.+.+ .....+. .+ .... +.+|++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~--~~Ga~~~i~~~~~~~~~~~~v~~~~~-~g~d~v 259 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAK--KLGATDCVNPNDYDKPIQEVIVEITD-GGVDYS 259 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HhCCCeEEcccccchhHHHHHHHHhC-CCCCEE
Confidence 4678999888 3 34556666777654 6999999999888874 3454321 1110010 00 0111 258988
Q ss_pred EEcCCCCCchHHHHhccccC-cEEEEEe
Q psy8015 94 HVGAAYPRYPEIFIHHLKSG-GRLVIPI 120 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~Lkpg-G~lvi~~ 120 (165)
+=....+...+...+.+++| |+++..-
T Consensus 260 id~~G~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 260 FECIGNVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred EECCCCHHHHHHHHHHhhcCCCeEEEEe
Confidence 76544444455667899886 9987643
No 324
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.39 E-value=0.78 Score=37.97 Aligned_cols=94 Identities=7% Similarity=-0.113 Sum_probs=55.4
Q ss_pred cCCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeE-EEEc-c-CC---CCCCCCCCccE
Q psy8015 23 GHSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDY-DLIA-D-GR---ASFGDNGPYDA 92 (165)
Q Consensus 23 ~~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~g-D-~~---~~~~~~~~fD~ 92 (165)
...++++||=. .+.|..+..+|+..+ +|++++.+++..+.++ ++|.+.+- .... + .. ..... +.+|.
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~--~~Ga~~~i~~~~~~~~~~~~v~~~~~-~~~d~ 260 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK--KFGVTEFVNPKDHDKPVQEVIAEMTG-GGVDY 260 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HcCCceEEcccccchhHHHHHHHHhC-CCCCE
Confidence 34789999877 333445555666554 7999999999888774 34543211 1110 0 00 01111 26897
Q ss_pred EEEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015 93 IHVGAAYPRYPEIFIHHLKSG-GRLVIP 119 (165)
Q Consensus 93 I~i~~~~~~~p~~l~~~Lkpg-G~lvi~ 119 (165)
++=....+.......+.+++| |+++..
T Consensus 261 vid~~G~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 261 SFECTGNIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred EEECCCChHHHHHHHHHhhcCCCEEEEE
Confidence 765444444445567889996 998764
No 325
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=91.34 E-value=0.93 Score=37.25 Aligned_cols=93 Identities=10% Similarity=-0.013 Sum_probs=54.9
Q ss_pred CCCCeEEEE--ccccHHHHHHhccC-C-cEEEEeCCHHHHHhcccccCCCCCeEEEEc-cC------CCCCCCCCCccEE
Q psy8015 25 SKRLDCLAL--TSNTKQSTTLPTFI-P-NSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DG------RASFGDNGPYDAI 93 (165)
Q Consensus 25 ~~~~~vLei--~GsG~~t~~la~~~-~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~------~~~~~~~~~fD~I 93 (165)
.++++||=. .+.|..+..+|+.. . +|++++.+++..+.++ ++|.+.+--... +. .........+|.+
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~--~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~v 253 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR--EFGADATIDIDELPDPQRRAIVRDITGGRGADVV 253 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEE
Confidence 478888877 44455555666554 3 7999999888776653 445433211111 10 0011122469988
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+-...........++.|+++|+++..
T Consensus 254 id~~g~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 254 IEASGHPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EECCCChHHHHHHHHHhccCCEEEEE
Confidence 76543333445667999999999864
No 326
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.29 E-value=0.31 Score=41.12 Aligned_cols=98 Identities=16% Similarity=0.066 Sum_probs=58.6
Q ss_pred CCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc-c-ccCCCCCeEEEEccCCC---CCCCCCCccEEEEc
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL-S-STIDPDHDYDLIADGRA---SFGDNGPYDAIHVG 96 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~-~-~~~~~~nV~~~~gD~~~---~~~~~~~fD~I~i~ 96 (165)
..+++||+ .|.|.-.-.+-.+. ..++-+|.|+.+-+..- + +......-.....|... .++....|+++++.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 46789999 88775444333332 57888898887766553 1 11121122222333322 34445678888875
Q ss_pred CCC-C----C----chHHHHhccccCcEEEEEecCC
Q psy8015 97 AAY-P----R----YPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 97 ~~~-~----~----~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
.-. + . +.+.++..+.|||.||+.....
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 322 1 1 3467899999999999987543
No 327
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.23 E-value=1.2 Score=35.88 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=57.3
Q ss_pred cCCCCCeEEEE-cc-ccHHHHHHhccCC-c-EEEEeCCHHHHHhcccccCCCCCeEEEEccCCC----CCCCCCCccEEE
Q psy8015 23 GHSKRLDCLAL-TS-NTKQSTTLPTFIP-N-SFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA----SFGDNGPYDAIH 94 (165)
Q Consensus 23 ~~~~~~~vLei-~G-sG~~t~~la~~~~-~-V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~----~~~~~~~fD~I~ 94 (165)
...++++||-. +| .|..++.+|+..+ + |+.++.+++..+.++ +++.+ .++..+... .......+|.++
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~--~~g~~--~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK--KLGAT--ETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HhCCe--EEecCCCCCHHHHHHhcCCCCcEEE
Confidence 34688999888 43 3556666666554 4 899999998877663 23432 222222111 011235699888
Q ss_pred EcCCCCCchHHHHhccccCcEEEEE
Q psy8015 95 VGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 95 i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
-............+.|+++|+++..
T Consensus 232 ~~~~~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 232 EATGVPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred ECCCChHHHHHHHHHHhcCCEEEEE
Confidence 6543344555667999999998764
No 328
>PLN02827 Alcohol dehydrogenase-like
Probab=91.18 E-value=0.58 Score=39.16 Aligned_cols=93 Identities=9% Similarity=-0.071 Sum_probs=55.3
Q ss_pred CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEc--cCCC---CCCCCCCccEE
Q psy8015 24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIA--DGRA---SFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~g--D~~~---~~~~~~~fD~I 93 (165)
..++++||=. + +.|..+..+|+..+ .|+++|.+++..+.|+ ++|.+.+ ..... +..+ .... +.+|++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~--~lGa~~~i~~~~~~~~~~~~v~~~~~-~g~d~v 267 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK--TFGVTDFINPNDLSEPIQQVIKRMTG-GGADYS 267 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH--HcCCcEEEcccccchHHHHHHHHHhC-CCCCEE
Confidence 4679999877 3 34455555666544 5899999998888774 3454321 11110 1101 0111 258988
Q ss_pred EEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSG-GRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~Lkpg-G~lvi~ 119 (165)
+=..+.+.......+.|++| |+++..
T Consensus 268 id~~G~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 268 FECVGDTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred EECCCChHHHHHHHHhhccCCCEEEEE
Confidence 76555443445667899999 999863
No 329
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.16 E-value=0.9 Score=37.11 Aligned_cols=103 Identities=10% Similarity=-0.029 Sum_probs=60.7
Q ss_pred cCCchHHHHHHHHHHhcC---CCCCeEEEEccccHHHHHHhc----cCCcEEEEeCCHHHHHhcccccCCCCCeEEEE-c
Q psy8015 7 SGSVSGAVAKYVTYLSGH---SKRLDCLALTSNTKQSTTLPT----FIPNSFNINVYYYLSGGPLSSTIDPDHDYDLI-A 78 (165)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~---~~~~~vLei~GsG~~t~~la~----~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~-g 78 (165)
.+|++...+.+.+.+... -.+++|+=+ |.|..+..++. +..+|+.+|++++..+.++ ..|. +++. .
T Consensus 129 ~ns~~~aegav~~a~~~~~~~l~g~kvlVi-G~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~--~~G~---~~~~~~ 202 (296)
T PRK08306 129 LNSIPTAEGAIMMAIEHTPITIHGSNVLVL-GFGRTGMTLARTLKALGANVTVGARKSAHLARIT--EMGL---SPFHLS 202 (296)
T ss_pred hccHhHHHHHHHHHHHhCCCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--HcCC---eeecHH
Confidence 456666666555554321 257888877 55555544443 2358999999987665553 3343 2221 1
Q ss_pred cCCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEE
Q psy8015 79 DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVI 118 (165)
Q Consensus 79 D~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi 118 (165)
+..+. ...+|+||......-+.++.++.++||+.++=
T Consensus 203 ~l~~~---l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 203 ELAEE---VGKIDIIFNTIPALVLTKEVLSKMPPEALIID 239 (296)
T ss_pred HHHHH---hCCCCEEEECCChhhhhHHHHHcCCCCcEEEE
Confidence 11111 24689998865444455677888999776553
No 330
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=91.14 E-value=1.1 Score=37.81 Aligned_cols=97 Identities=12% Similarity=-0.059 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcc---ccHHHHHHhccC----CcEEEEeCCHHHHHhcc-c-ccC----CCCCeEEEEc----cCCC---C
Q psy8015 24 HSKRLDCLALTS---NTKQSTTLPTFI----PNSFNINVYYYLSGGPL-S-STI----DPDHDYDLIA----DGRA---S 83 (165)
Q Consensus 24 ~~~~~~vLei~G---sG~~t~~la~~~----~~V~aiD~~~~~~~~A~-~-~~~----~~~nV~~~~g----D~~~---~ 83 (165)
.+++++||=+-| .|..+..+|+.. .+|+++|.+++.++.|+ + ... |.+ ..++.. |..+ .
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~-~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE-LLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce-EEEECCCccccHHHHHHH
Confidence 367888875533 445555566653 27999999999998885 2 100 221 112211 1100 0
Q ss_pred CCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEec
Q psy8015 84 FGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 84 ~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~ 121 (165)
+.....||.++...+.+.......+.|+++|++++..+
T Consensus 252 ~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 252 LTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred HhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 11223699888765444444556799999998877544
No 331
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=91.03 E-value=2.5 Score=34.03 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=56.7
Q ss_pred CCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC-CCCCCccEEEEcCCC
Q psy8015 24 HSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF-GDNGPYDAIHVGAAY 99 (165)
Q Consensus 24 ~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~-~~~~~fD~I~i~~~~ 99 (165)
..++++||-. +| .|..+..+++.. .+|+.++.+++..+.++ ++|.+.+ +..+..... ...+.+|.++-....
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~--~~g~~~~--~~~~~~~~~~~~~~~~d~vi~~~~~ 235 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELAR--KLGADEV--VDSGAELDEQAAAGGADVILVTVVS 235 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HhCCcEE--eccCCcchHHhccCCCCEEEECCCc
Confidence 4678899888 54 666666666654 48999999998877663 2343211 111100000 012469988765343
Q ss_pred CCchHHHHhccccCcEEEEEe
Q psy8015 100 PRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi~~ 120 (165)
.......++.|+++|+++...
T Consensus 236 ~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 236 GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred HHHHHHHHHhcccCCEEEEEC
Confidence 345566789999999988753
No 332
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.99 E-value=1 Score=37.34 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=50.4
Q ss_pred CCCCeEEEE--ccccHHHHHHhccC-CcEEEEeCCHHHH-HhcccccCCCCCeEEEE-ccCCCCCCCCCCccEEEEcCCC
Q psy8015 25 SKRLDCLAL--TSNTKQSTTLPTFI-PNSFNINVYYYLS-GGPLSSTIDPDHDYDLI-ADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 25 ~~~~~vLei--~GsG~~t~~la~~~-~~V~aiD~~~~~~-~~A~~~~~~~~nV~~~~-gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
.++++||=. .+.|..+..+|+.. .+|++++.+++-. +.+ +++|.+.+ +. .+........+.+|+++-....
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~--~~~Ga~~v--i~~~~~~~~~~~~~~~D~vid~~g~ 257 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI--NRLGADSF--LVSTDPEKMKAAIGTMDYIIDTVSA 257 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH--HhCCCcEE--EcCCCHHHHHhhcCCCCEEEECCCC
Confidence 578898877 34455666666654 4788888776433 222 23454221 11 1100000001258988754443
Q ss_pred CCchHHHHhccccCcEEEEE
Q psy8015 100 PRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi~ 119 (165)
...-+...+.|++||+++..
T Consensus 258 ~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 258 VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred HHHHHHHHHHhcCCcEEEEe
Confidence 33334567999999998864
No 333
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.86 E-value=0.58 Score=39.21 Aligned_cols=91 Identities=13% Similarity=-0.019 Sum_probs=52.0
Q ss_pred CCCCeEEEE--ccccHHHHHHhccCC-cEEEEeCCHHH-HHhcccccCCCCCeEEEEc-cCCCCCCCCCCccEEEEcCCC
Q psy8015 25 SKRLDCLAL--TSNTKQSTTLPTFIP-NSFNINVYYYL-SGGPLSSTIDPDHDYDLIA-DGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 25 ~~~~~vLei--~GsG~~t~~la~~~~-~V~aiD~~~~~-~~~A~~~~~~~~nV~~~~g-D~~~~~~~~~~fD~I~i~~~~ 99 (165)
+++++||=. .+.|..+..+|+..+ +|++++.+++. .+.+ +++|.+.+ +.. +........+.+|+++-..+.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a--~~lGa~~~--i~~~~~~~v~~~~~~~D~vid~~G~ 252 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAI--DRLGADSF--LVTTDSQKMKEAVGTMDFIIDTVSA 252 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHH--HhCCCcEE--EcCcCHHHHHHhhCCCcEEEECCCc
Confidence 478888766 334555566666544 79999877543 4444 34454321 111 100000001258988765544
Q ss_pred CCchHHHHhccccCcEEEEE
Q psy8015 100 PRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi~ 119 (165)
+...+...+.|++||+++..
T Consensus 253 ~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 253 EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred HHHHHHHHHhhcCCCEEEEE
Confidence 44455667999999999874
No 334
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=90.77 E-value=2.5 Score=33.97 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=51.8
Q ss_pred CCCCCeEEEEccccHH---HHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 24 HSKRLDCLALTSNTKQ---STTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 24 ~~~~~~vLei~GsG~~---t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
..++++||=. |+|.+ ++.+++.. .+|++++.+++..+.++ .+|.+. ++..+. . ....+|.++.....
T Consensus 165 ~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~--~~g~~~--~~~~~~---~-~~~~vD~vi~~~~~ 235 (329)
T cd08298 165 LKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRSGEHQELAR--ELGADW--AGDSDD---L-PPEPLDAAIIFAPV 235 (329)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHH--HhCCcE--EeccCc---c-CCCcccEEEEcCCc
Confidence 4678888766 34444 34444433 48999998887776663 344321 111111 1 12358988765333
Q ss_pred CCchHHHHhccccCcEEEE
Q psy8015 100 PRYPEIFIHHLKSGGRLVI 118 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi 118 (165)
....+..++.|+++|+++.
T Consensus 236 ~~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 236 GALVPAALRAVKKGGRVVL 254 (329)
T ss_pred HHHHHHHHHHhhcCCEEEE
Confidence 4455667899999999985
No 335
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=90.69 E-value=0.49 Score=38.39 Aligned_cols=94 Identities=5% Similarity=-0.057 Sum_probs=56.2
Q ss_pred CCCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i 95 (165)
..++++||-. +| .|..+..+|+..+ +|++++.+++..+.++ ++|.+.+ .....+..+ .......+|+++-
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~--~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK--EAGATDIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH--HhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 3678899887 53 4677777777655 6889988887777654 2232211 111111100 1112246998875
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
...........++.|+++|+++..
T Consensus 243 ~~g~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 243 AVGFEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred ccCCHHHHHHHHHHhhcCCEEEEE
Confidence 443333555667999999998754
No 336
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.60 E-value=1.8 Score=30.81 Aligned_cols=86 Identities=13% Similarity=-0.024 Sum_probs=54.1
Q ss_pred CCeEEEEccccHHHHH---HhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCCCCc
Q psy8015 27 RLDCLALTSNTKQSTT---LPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAYPRY 102 (165)
Q Consensus 27 ~~~vLei~GsG~~t~~---la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~~~~ 102 (165)
..+|.|+ |.|+++.. |++.+-.|+++|+++. .| . +.+.++..|.++.-- -....|+|+.--..+++
T Consensus 14 ~gkVvEV-GiG~~~~VA~~L~e~g~dv~atDI~~~---~a-----~-~g~~~v~DDitnP~~~iY~~A~lIYSiRpppEl 83 (129)
T COG1255 14 RGKVVEV-GIGFFLDVAKRLAERGFDVLATDINEK---TA-----P-EGLRFVVDDITNPNISIYEGADLIYSIRPPPEL 83 (129)
T ss_pred CCcEEEE-ccchHHHHHHHHHHcCCcEEEEecccc---cC-----c-ccceEEEccCCCccHHHhhCccceeecCCCHHH
Confidence 3499999 88876654 4444457999999987 22 1 457889999876321 13457999887777766
Q ss_pred hHHHHhccc-cCcEEEE-EecC
Q psy8015 103 PEIFIHHLK-SGGRLVI-PIGD 122 (165)
Q Consensus 103 p~~l~~~Lk-pgG~lvi-~~~~ 122 (165)
...+.+.-+ -|-.+++ |...
T Consensus 84 ~~~ildva~aVga~l~I~pL~G 105 (129)
T COG1255 84 QSAILDVAKAVGAPLYIKPLTG 105 (129)
T ss_pred HHHHHHHHHhhCCCEEEEecCC
Confidence 654443322 2344444 4443
No 337
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.33 E-value=0.68 Score=37.20 Aligned_cols=93 Identities=5% Similarity=-0.052 Sum_probs=54.4
Q ss_pred cCCCCCeEEEEc---cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEE-ccCCC---CCCCCCCccEEE
Q psy8015 23 GHSKRLDCLALT---SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLI-ADGRA---SFGDNGPYDAIH 94 (165)
Q Consensus 23 ~~~~~~~vLei~---GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~-gD~~~---~~~~~~~fD~I~ 94 (165)
...++++||=.- |.|..+..+|+.. .+|++++.+++-.+.++ ++|.+.+--.. .|..+ .... ..+|+|+
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~--~~Ga~~vi~~~~~~~~~~v~~~~~-~gvd~vl 216 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK--ELGFDAVFNYKTVSLEEALKEAAP-DGIDCYF 216 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCCEEEeCCCccHHHHHHHHCC-CCcEEEE
Confidence 346788887553 3445555566654 47999999888777664 34553221111 11100 1112 4589887
Q ss_pred EcCCCCCchHHHHhccccCcEEEEE
Q psy8015 95 VGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 95 i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
-..+. ...+..++.|+++|+++..
T Consensus 217 d~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 217 DNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred ECCCH-HHHHHHHHhhccCCEEEEE
Confidence 54333 4446678999999998764
No 338
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=90.11 E-value=0.89 Score=36.38 Aligned_cols=50 Identities=6% Similarity=-0.065 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL 64 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~ 64 (165)
...+++... . .+++.|||. +|+|......-++..+.+++|++++..+.+.
T Consensus 211 l~~r~i~~~-s-~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~ 261 (302)
T COG0863 211 LIERLIRDY-S-FPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVAL 261 (302)
T ss_pred HHHHHHHhc-C-CCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHH
Confidence 345556552 2 689999999 9999999888888899999999999999984
No 339
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=89.86 E-value=1.4 Score=35.84 Aligned_cols=94 Identities=9% Similarity=0.007 Sum_probs=54.5
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCC-eEEEEccCC---CCCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGR---ASFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~---~~~~~~~~fD~I~i 95 (165)
..++++||=. .+.|..+..+|+..+ +|++++.+++..+.++ .+|.+. +.....+.. ..+.....+|.++-
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~--~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK--KLGATHTVNSAKGDAIEQVLELTDGRGVDVVIE 241 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HhCCCceeccccccHHHHHHHHhCCCCCCEEEE
Confidence 3578887766 444555566666554 7899999887776654 345432 121111110 01122346998875
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
.......-+.+.+.|+++|+++..
T Consensus 242 ~~g~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 242 AVGIPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCCHHHHHHHHHhccCCcEEEEe
Confidence 433223345667999999998753
No 340
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.78 E-value=1.2 Score=38.20 Aligned_cols=84 Identities=5% Similarity=-0.132 Sum_probs=52.6
Q ss_pred CCCCeEEEEccccHHHHHHh---cc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 25 SKRLDCLALTSNTKQSTTLP---TF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 25 ~~~~~vLei~GsG~~t~~la---~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
-+|++|+=+ |.|..+...+ +. ..+|+.+|.++...+.|+. .|.. ...-+ +.. ..+|+|+.....+
T Consensus 200 l~GktVvVi-G~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~--~G~~---~~~~~--e~v---~~aDVVI~atG~~ 268 (413)
T cd00401 200 IAGKVAVVA-GYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM--EGYE---VMTME--EAV---KEGDIFVTTTGNK 268 (413)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh--cCCE---EccHH--HHH---cCCCEEEECCCCH
Confidence 478999776 5555554433 33 3489999999988887752 3432 11111 111 2479888765555
Q ss_pred Cc-hHHHHhccccCcEEEEE
Q psy8015 101 RY-PEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 101 ~~-p~~l~~~LkpgG~lvi~ 119 (165)
.. ....++.+|+||+++..
T Consensus 269 ~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 269 DIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred HHHHHHHHhcCCCCcEEEEe
Confidence 44 44568999999988653
No 341
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.77 E-value=2.5 Score=34.39 Aligned_cols=94 Identities=7% Similarity=-0.053 Sum_probs=55.0
Q ss_pred cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEE-EEc-cCC---CCCCCCCCccEE
Q psy8015 23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYD-LIA-DGR---ASFGDNGPYDAI 93 (165)
Q Consensus 23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~-~~g-D~~---~~~~~~~~fD~I 93 (165)
..++|++||=. + |.|..+..+|+.. .+|++++.+++-.+.++. .+|.+.+-- ... |.. ..... ..+|++
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~-~lGa~~vi~~~~~~~~~~~i~~~~~-~gvd~v 225 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN-KLGFDDAFNYKEEPDLDAALKRYFP-NGIDIY 225 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-hcCCceeEEcCCcccHHHHHHHhCC-CCcEEE
Confidence 34788999855 3 3445555556554 479999988887766531 145543211 111 110 11111 468988
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+-.... ...+..++.|+++|+++..
T Consensus 226 ~d~~g~-~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 226 FDNVGG-KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EECCCH-HHHHHHHHHhccCcEEEEe
Confidence 754433 3445678999999998864
No 342
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.57 E-value=0.65 Score=39.43 Aligned_cols=49 Identities=8% Similarity=-0.143 Sum_probs=35.1
Q ss_pred HHHHhcCCCCCeEEEEccccHHHHHHhc-cCCcEEEEeCCHHHHHhccccc
Q psy8015 18 VTYLSGHSKRLDCLALTSNTKQSTTLPT-FIPNSFNINVYYYLSGGPLSST 67 (165)
Q Consensus 18 l~~l~~~~~~~~vLei~GsG~~t~~la~-~~~~V~aiD~~~~~~~~A~~~~ 67 (165)
.+.| .+.|+++||=||++|-.+..+.. --++|+|||.||.-....+++.
T Consensus 28 ~~aL-~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 28 MEAL-NIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHHh-CCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 4555 46899999999666665554433 3479999999998877665443
No 343
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=89.44 E-value=0.45 Score=37.33 Aligned_cols=53 Identities=6% Similarity=-0.170 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015 11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL 64 (165)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~ 64 (165)
......+++.+.. .+..++.|. +|+|.++..+.....+|+.=|+++.++...+
T Consensus 6 ~~l~~~I~~~ip~-~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 6 RKLAKWIIELIPK-NKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGGHHHHHHHS-S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 3455666676642 178999999 9999999988777889999999998888765
No 344
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=89.43 E-value=1.8 Score=35.39 Aligned_cols=94 Identities=12% Similarity=-0.102 Sum_probs=55.2
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i 95 (165)
..++++||=. .+.|..+..+|+..+ +|++++.+++-.+.++ ++|.+.+ .....+..+ .......+|.++-
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~--~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid 247 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE--ELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFD 247 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HhCCCEEECCCccCHHHHHHHHhCCCCCCEEEE
Confidence 4678888777 344555555666543 7999999988887764 2344211 111111100 0112235998876
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
........+..++.|+++|+++..
T Consensus 248 ~~g~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 248 CAGVQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCCHHHHHHHHHhccCCCEEEEE
Confidence 554433445667899999998764
No 345
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.38 E-value=0.51 Score=41.30 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=51.5
Q ss_pred CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCCCc
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYPRY 102 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~~~ 102 (165)
=..|+|. +|.|.+|+.|... .|.-...-+..-...- .-..|+-. +..|-.+.++. ..+||.|+.++.+..+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~~~~ntL~vIydRGLIG---~yhDWCE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD--PVWVMNVVPVSGPNTLPVIYDRGLIG---VYHDWCEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred eeeeeeecccccHHHHHhccC--CceEEEecccCCCCcchhhhhcccch---hccchhhccCCCCcchhheehhhhhhhh
Confidence 4679999 9999999999753 3444444443111000 11112211 12233333322 3689999998776543
Q ss_pred h---------HHHHhccccCcEEEEE
Q psy8015 103 P---------EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 103 p---------~~l~~~LkpgG~lvi~ 119 (165)
. -++=+.|+|+|.+++=
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEe
Confidence 2 2456899999998873
No 346
>KOG2078|consensus
Probab=89.32 E-value=0.26 Score=42.39 Aligned_cols=70 Identities=6% Similarity=-0.135 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc----cccCCCCCeEEEEccCCC
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL----SSTIDPDHDYDLIADGRA 82 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~----~~~~~~~nV~~~~gD~~~ 82 (165)
.+....|+-.. .++|+.|-|+ ||.|=+++.++.-..+|++-|.++++++.-+ +....-.+++.+..||..
T Consensus 236 L~~Eherlsg~---fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 236 LSHEHERLSGL---FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred chhHHHHHhhc---cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 34456666663 2789999999 9999999999988899999999999999874 334444568888888754
No 347
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.31 E-value=1.4 Score=35.89 Aligned_cols=93 Identities=15% Similarity=0.020 Sum_probs=55.2
Q ss_pred CCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCC--CCCCCCCCccEEEEcC
Q psy8015 25 SKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGR--ASFGDNGPYDAIHVGA 97 (165)
Q Consensus 25 ~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~--~~~~~~~~fD~I~i~~ 97 (165)
.++++||=. + +.|..++.+++..+ +|++++.+++-.+.++ ++|.+.+ .....+.. ......+.+|.++-..
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~ 239 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK--KMGADVVINPREEDVVEVKSVTDGTGVDVVLEMS 239 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HhCcceeeCcccccHHHHHHHcCCCCCCEEEECC
Confidence 578888776 4 34677777777654 6888887776666554 2343221 11111110 0112234699888654
Q ss_pred CCCCchHHHHhccccCcEEEEE
Q psy8015 98 AYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 98 ~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
..........+.|+++|+++..
T Consensus 240 g~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 240 GNPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCHHHHHHHHHHhccCCEEEEE
Confidence 4444456678999999998764
No 348
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=89.29 E-value=2.2 Score=34.60 Aligned_cols=93 Identities=10% Similarity=0.098 Sum_probs=56.5
Q ss_pred cCCCCCeEEEE-ccc-cHHHHHHhccCC-c-EEEEeCCHHHHHhcccccCCCCCeEEEEccC--C---CCCCCCCCccEE
Q psy8015 23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP-N-SFNINVYYYLSGGPLSSTIDPDHDYDLIADG--R---ASFGDNGPYDAI 93 (165)
Q Consensus 23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~-~-V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~--~---~~~~~~~~fD~I 93 (165)
...++++||-. +|+ |..+..+|+..+ + |+.++.+++..+.++ ..+..+ ++..+. . ........+|.+
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~--~~g~~~--~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR--ELGADD--TINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HcCCCE--EecCccccHHHHHHHhCCCCCCEE
Confidence 34688899988 543 667666776553 4 999998887777553 234322 111110 0 011222359988
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+-...........++.|+++|+++..
T Consensus 232 ld~~g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 232 IEAAGSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred EECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 86543334456678999999997764
No 349
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.50 E-value=1.6 Score=39.09 Aligned_cols=85 Identities=5% Similarity=-0.105 Sum_probs=60.1
Q ss_pred ccccHHHHHHhccC----CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCCchH-
Q psy8015 34 TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPRYPE- 104 (165)
Q Consensus 34 ~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~~p~- 104 (165)
||.|-++..+++.. .+++.+|.|++.++.++. . +..++.||+.+. + ..-++.|.+++....++.-.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~---g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~ 480 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK--Y---GYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK 480 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--C---CCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence 89999998888752 589999999999997752 2 357899998752 1 12357898888655543221
Q ss_pred --HHHhccccCcEEEEEecCC
Q psy8015 105 --IFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 105 --~l~~~LkpgG~lvi~~~~~ 123 (165)
...+.+.|.-++++-..++
T Consensus 481 i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 481 IVELCQQHFPHLHILARARGR 501 (601)
T ss_pred HHHHHHHHCCCCeEEEEeCCH
Confidence 3456778888888766543
No 350
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=88.42 E-value=2.7 Score=33.92 Aligned_cols=95 Identities=11% Similarity=0.015 Sum_probs=58.4
Q ss_pred cCCCCCeEEEE-c-cccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cC-CCCC-CCCCCccEEEE
Q psy8015 23 GHSKRLDCLAL-T-SNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DG-RASF-GDNGPYDAIHV 95 (165)
Q Consensus 23 ~~~~~~~vLei-~-GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~-~~~~-~~~~~fD~I~i 95 (165)
...++++||=. + +.|..+..+|+. ..+|++++.+++-.+.++ ++|.+.+--... +. .+.+ ...+.+|.++.
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~--~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~ 236 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK--EVGADLTINSKRVEDVAKIIQEKTGGAHAAVV 236 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH--HcCCcEEecccccccHHHHHHHhcCCCcEEEE
Confidence 34678888777 3 456777777774 568999999999888774 345432211111 11 0000 01124786666
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+.......+..++.|+++|+++..
T Consensus 237 ~~~~~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 237 TAVAKAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred eCCCHHHHHHHHHhccCCCEEEEE
Confidence 654445556778999999998874
No 351
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=88.35 E-value=1.6 Score=36.15 Aligned_cols=93 Identities=9% Similarity=-0.094 Sum_probs=56.5
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEc--cCCC---CCCCCCCccEE
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIA--DGRA---SFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~g--D~~~---~~~~~~~fD~I 93 (165)
.+++++||=. .+.|..+..+|+..+ +|+++|.+++-.+.++ .+|.+.+ ..... |..+ .+.. +.+|+|
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~--~lGa~~~i~~~~~~~~~~~~v~~~~~-~g~d~v 260 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK--KFGATDCVNPKDHDKPIQQVLVEMTD-GGVDYT 260 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HcCCCEEEcccccchHHHHHHHHHhC-CCCcEE
Confidence 4689999888 344555666666543 6999999999888774 3454321 11111 0100 0111 369988
Q ss_pred EEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSG-GRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~Lkpg-G~lvi~ 119 (165)
+-....+...+...+.|+++ |+++..
T Consensus 261 id~~g~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 261 FECIGNVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred EECCCChHHHHHHHHhhccCCCeEEEE
Confidence 76544333445567899997 998874
No 352
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=88.11 E-value=2.9 Score=33.99 Aligned_cols=93 Identities=11% Similarity=0.003 Sum_probs=54.8
Q ss_pred CCCCeEEEE-c-cccHHHHHHhccCC-c-EEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEEc
Q psy8015 25 SKRLDCLAL-T-SNTKQSTTLPTFIP-N-SFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei-~-GsG~~t~~la~~~~-~-V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i~ 96 (165)
.+++++|=. + +.|+.++.+|+..+ + |++++.+++-.+.++ .+|.+.+ .....+..+ .......||.++-.
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~--~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~ 237 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAK--KMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEM 237 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HhCCcEEEcccccCHHHHHHHhcCCCCCCEEEEC
Confidence 578888766 3 34566666676554 4 888888887776653 2343221 111111111 11223469988775
Q ss_pred CCCCCchHHHHhccccCcEEEEE
Q psy8015 97 AAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 97 ~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
.......+...+.|+++|+++..
T Consensus 238 ~g~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 238 SGAPKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCHHHHHHHHHhhcCCCEEEEE
Confidence 34334456678999999998764
No 353
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.10 E-value=2.3 Score=37.65 Aligned_cols=85 Identities=4% Similarity=-0.180 Sum_probs=58.3
Q ss_pred E-ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCCc-
Q psy8015 33 L-TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPRY- 102 (165)
Q Consensus 33 i-~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~~- 102 (165)
+ ||.|-++..+++. ..+|+.+|.|++.++.++. .+...+.||+.+. + ..-++.|.+++.-..+.-
T Consensus 421 iI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~ 495 (558)
T PRK10669 421 LLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----RGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEA 495 (558)
T ss_pred EEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----CCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHH
Confidence 6 9999999888875 3579999999999887752 2578899998752 1 223578988775433211
Q ss_pred --hHHHHhccccCcEEEEEecC
Q psy8015 103 --PEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 103 --p~~l~~~LkpgG~lvi~~~~ 122 (165)
--...+.+.|.-++++-+.+
T Consensus 496 ~~iv~~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 496 GEIVASAREKRPDIEIIARAHY 517 (558)
T ss_pred HHHHHHHHHHCCCCeEEEEECC
Confidence 11234666777777776543
No 354
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=88.09 E-value=3.2 Score=36.35 Aligned_cols=73 Identities=4% Similarity=-0.079 Sum_probs=46.1
Q ss_pred CCCCeEEEE-ccccHHHHHHhcc------CCcEEEEeCCHHHHHhcc--cccCCC--CCeEEEEccCCCCC--CCCCCcc
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTF------IPNSFNINVYYYLSGGPL--SSTIDP--DHDYDLIADGRASF--GDNGPYD 91 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~------~~~V~aiD~~~~~~~~A~--~~~~~~--~nV~~~~gD~~~~~--~~~~~fD 91 (165)
.|+..+.|. ||||.+-....+. ...+++-|.++.+...|+ ..-.+. ++.....+|..... ....+||
T Consensus 216 dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D 295 (501)
T TIGR00497 216 DTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFE 295 (501)
T ss_pred CCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCC
Confidence 367899999 9999876543321 135899999999999886 211222 23344455654321 1235689
Q ss_pred EEEEcC
Q psy8015 92 AIHVGA 97 (165)
Q Consensus 92 ~I~i~~ 97 (165)
.|+.+.
T Consensus 296 ~v~~Np 301 (501)
T TIGR00497 296 VVVSNP 301 (501)
T ss_pred EEeecC
Confidence 888765
No 355
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=87.96 E-value=2.2 Score=34.49 Aligned_cols=93 Identities=12% Similarity=0.029 Sum_probs=55.2
Q ss_pred CCCCeEEEE--ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccC---CCCCCCCCCccEEEEcC
Q psy8015 25 SKRLDCLAL--TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADG---RASFGDNGPYDAIHVGA 97 (165)
Q Consensus 25 ~~~~~vLei--~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~---~~~~~~~~~fD~I~i~~ 97 (165)
.++++||=. .+.|..++.+|+.. .+|++++.+++-.+.++ ++|.+.+--...+. ...+.....+|.++-..
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~ 243 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE--RLGADHVLNASDDVVEEVRELTGGRGADAVIDFV 243 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH--HhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcC
Confidence 567888777 44566666666654 48999998887766553 34442211111110 00112224699888654
Q ss_pred CCCCchHHHHhccccCcEEEEE
Q psy8015 98 AYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 98 ~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
..+...+..++.|+++|+++..
T Consensus 244 g~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 244 GSDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCHHHHHHHHHHhhcCCEEEEE
Confidence 4334455667999999998864
No 356
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=87.77 E-value=3.1 Score=33.53 Aligned_cols=90 Identities=7% Similarity=-0.056 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC----CC
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA----SF 84 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~----~~ 84 (165)
.+...+.++..+....++.+ |.- +||-.++..+.+--.++...|+.|+=...-+..-.+-.||.+..+|++. .+
T Consensus 73 lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~L 151 (279)
T COG2961 73 LPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHL 151 (279)
T ss_pred chHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhC
Confidence 56677788888877677776 899 9999999999988899999999998777665222255689999999874 34
Q ss_pred CCCCCccEEEEcCCCC
Q psy8015 85 GDNGPYDAIHVGAAYP 100 (165)
Q Consensus 85 ~~~~~fD~I~i~~~~~ 100 (165)
|+.+.=-.|+++..++
T Consensus 152 PP~erRglVLIDPPfE 167 (279)
T COG2961 152 PPKERRGLVLIDPPFE 167 (279)
T ss_pred CCCCcceEEEeCCCcc
Confidence 4445557899988776
No 357
>KOG2352|consensus
Probab=87.58 E-value=1.3 Score=38.57 Aligned_cols=98 Identities=14% Similarity=0.040 Sum_probs=62.9
Q ss_pred CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC-------CCCCCCCccEE
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA-------SFGDNGPYDAI 93 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~-------~~~~~~~fD~I 93 (165)
-+...|=+ -|+|.+...+-.-. -+++++|++|.|++.|+ +.........+...|+.. .-++...||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 35567777 78888877664433 47999999999999996 221111233445555531 11245789999
Q ss_pred EEcCCCCC------ch---------HHHHhccccCcEEEEEecCC
Q psy8015 94 HVGAAYPR------YP---------EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 94 ~i~~~~~~------~p---------~~l~~~LkpgG~lvi~~~~~ 123 (165)
+++-.-.. .| ......|.|-|.+.+..-..
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 99744322 11 13568899999998876544
No 358
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.90 E-value=1.1 Score=36.99 Aligned_cols=66 Identities=11% Similarity=-0.071 Sum_probs=43.9
Q ss_pred EEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCC
Q psy8015 30 CLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAY 99 (165)
Q Consensus 30 vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~ 99 (165)
|+|+ ||.|.++.-|-+.+- -|.++|+++...+.-+.. .++ .++.+|..+..+ +...+|+++.+..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N---~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEAN---FGN-KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHh---CCC-CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 6899 999999988876654 467899999998876421 122 344567654321 23458988776443
No 359
>PRK10458 DNA cytosine methylase; Provisional
Probab=86.89 E-value=5.3 Score=34.92 Aligned_cols=38 Identities=5% Similarity=-0.139 Sum_probs=30.7
Q ss_pred CCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL 64 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~ 64 (165)
.-+++|+ ||.|-++.-+-... ..|.++|+++.+.+.=+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~ 127 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYK 127 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHH
Confidence 4599999 99999998876655 46789999998887543
No 360
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.62 E-value=3.1 Score=34.43 Aligned_cols=91 Identities=9% Similarity=0.007 Sum_probs=56.7
Q ss_pred CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccEE
Q psy8015 24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~I 93 (165)
..++++||=. + +.|..+..+|+..+ +|+++|.+++..+.++ .+|.+ .++..+-. + ... ...+|.+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~--~~g~~--~~i~~~~~~~~~~v~~~~-~~~~d~v 258 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK--ELGAT--HVINPKEEDLVAAIREIT-GGGVDYA 258 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HcCCc--EEecCCCcCHHHHHHHHh-CCCCcEE
Confidence 4678899888 4 33666666666543 5999999998887664 23432 11211110 0 011 2469988
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+-....+...+...+.|+++|+++..
T Consensus 259 ld~~g~~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 259 LDTTGVPAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred EECCCCcHHHHHHHHHhccCCEEEEe
Confidence 76544444556678999999998874
No 361
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=86.50 E-value=3.6 Score=33.92 Aligned_cols=92 Identities=11% Similarity=0.096 Sum_probs=54.8
Q ss_pred CCCCeEEEE-c-cccHHHHHHhccCC-c-EEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccEEE
Q psy8015 25 SKRLDCLAL-T-SNTKQSTTLPTFIP-N-SFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDAIH 94 (165)
Q Consensus 25 ~~~~~vLei-~-GsG~~t~~la~~~~-~-V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~I~ 94 (165)
.++++||=. + +.|..+..+|+..+ + |+.++.+++..+.++ .+|.+. ++..+-.. .......||.|+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~--~~g~~~--v~~~~~~~~~~~l~~~~~~~~~d~vl 261 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAK--ELGATH--TVNAAKEDAVAAIREITGGRGVDVVV 261 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HhCCce--EecCCcccHHHHHHHHhCCCCCCEEE
Confidence 578888866 3 35555566665543 5 999998888777663 334322 11111100 111234699888
Q ss_pred EcCCCCCchHHHHhccccCcEEEEEe
Q psy8015 95 VGAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 95 i~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
-........+..++.|+++|+++..-
T Consensus 262 d~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 262 EALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 64333324566789999999988764
No 362
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=85.95 E-value=1.8 Score=31.11 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=44.7
Q ss_pred CCCeEEEEccccHHH---HHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCCC
Q psy8015 26 KRLDCLALTSNTKQS---TTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYPR 101 (165)
Q Consensus 26 ~~~~vLei~GsG~~t---~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~~ 101 (165)
+..++.|| |.|... ..|++..-.|+++|+++. .| . ..+.++..|..+.-.+ ....|+|+.-...++
T Consensus 13 ~~~kiVEV-GiG~~~~vA~~L~~~G~dV~~tDi~~~---~a-----~-~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~E 82 (127)
T PF03686_consen 13 NYGKIVEV-GIGFNPEVAKKLKERGFDVIATDINPR---KA-----P-EGVNFVVDDIFNPNLEIYEGADLIYSIRPPPE 82 (127)
T ss_dssp -SSEEEEE-T-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE---SSS--HHHHTTEEEEEEES--TT
T ss_pred CCCcEEEE-CcCCCHHHHHHHHHcCCcEEEEECccc---cc-----c-cCcceeeecccCCCHHHhcCCcEEEEeCCChH
Confidence 45699999 666544 444444568999999997 12 1 3577888998763221 246899999888888
Q ss_pred chHHHHhcccc-CcEEEE-EecCC
Q psy8015 102 YPEIFIHHLKS-GGRLVI-PIGDT 123 (165)
Q Consensus 102 ~p~~l~~~Lkp-gG~lvi-~~~~~ 123 (165)
+...+.+.-+. |.-+++ +.+.+
T Consensus 83 l~~~il~lA~~v~adlii~pL~~e 106 (127)
T PF03686_consen 83 LQPPILELAKKVGADLIIRPLGGE 106 (127)
T ss_dssp SHHHHHHHHHHHT-EEEEE-BTTB
T ss_pred HhHHHHHHHHHhCCCEEEECCCCC
Confidence 77655443333 333333 44443
No 363
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.93 E-value=5.7 Score=35.13 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=55.1
Q ss_pred CCCeEEEE-ccc-cHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEE---ccCCCC----------------
Q psy8015 26 KRLDCLAL-TSN-TKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLI---ADGRAS---------------- 83 (165)
Q Consensus 26 ~~~~vLei-~Gs-G~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~---gD~~~~---------------- 83 (165)
++.+|+=+ +|. |..++.+++. ..+|+.+|.+++..+.++ .+|.+.+++-. ++...+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~--~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ--SMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 56899888 443 3444444444 357999999999888775 23433222211 110001
Q ss_pred CCC-CCCccEEEEcCCCC------CchHHHHhccccCcEEEEEe
Q psy8015 84 FGD-NGPYDAIHVGAAYP------RYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 84 ~~~-~~~fD~I~i~~~~~------~~p~~l~~~LkpgG~lvi~~ 120 (165)
+++ ...+|+|+.+...+ -+.++..+.+|||+.++=..
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 111 24699997776222 24577889999999877433
No 364
>PRK10083 putative oxidoreductase; Provisional
Probab=85.37 E-value=4.2 Score=32.87 Aligned_cols=94 Identities=9% Similarity=-0.097 Sum_probs=52.9
Q ss_pred CCCCCeEEEE--ccccHHHHHHhc-c-C-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCCCCCC-CCCccEEEEc
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPT-F-I-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRASFGD-NGPYDAIHVG 96 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~-~-~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~~~~~-~~~fD~I~i~ 96 (165)
..++++||=. .+.|..+..+|+ . . ..+++++.+++..+.++ ++|.+.+ .....+..+.+.. ...+|.++-.
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~--~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~ 235 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK--ESGADWVINNAQEPLGEALEEKGIKPTLIIDA 235 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH--HhCCcEEecCccccHHHHHhcCCCCCCEEEEC
Confidence 4678888777 444555566666 2 3 35888999988887764 2343221 1111111111111 1235666654
Q ss_pred CCCCCchHHHHhccccCcEEEEE
Q psy8015 97 AAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 97 ~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
...+.......+.|+++|+++..
T Consensus 236 ~g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 236 ACHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCCHHHHHHHHHHhhcCCEEEEE
Confidence 44333445567999999998874
No 365
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=85.30 E-value=9.8 Score=30.86 Aligned_cols=92 Identities=12% Similarity=0.076 Sum_probs=55.0
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCCCCCCCCCCccEEEEcCCC
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~~~~~~~~~fD~I~i~~~~ 99 (165)
..+++++|=. .+.|..++.+++.. .+|+.++.+++..+.++ .+|.+.+-.... +.... ....+|.++-....
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~--~~g~~~vi~~~~~~~~~~--~~~~~d~v~~~~g~ 242 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDAL--KLGADEFIATKDPEAMKK--AAGSLDLIIDTVSA 242 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH--HcCCcEEecCcchhhhhh--ccCCceEEEECCCC
Confidence 3567777666 35556666666544 47999999988777764 234332211111 11011 12468988865444
Q ss_pred CCchHHHHhccccCcEEEEE
Q psy8015 100 PRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi~ 119 (165)
....+...+.|+++|+++..
T Consensus 243 ~~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 243 SHDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred cchHHHHHHHhcCCCEEEEE
Confidence 43345667999999998874
No 366
>PRK13699 putative methylase; Provisional
Probab=85.29 E-value=0.94 Score=35.58 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=31.8
Q ss_pred eEEEEccCCCCC--CCCCCccEEEEcCCCC---------------------CchHHHHhccccCcEEEEEec
Q psy8015 73 DYDLIADGRASF--GDNGPYDAIHVGAAYP---------------------RYPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 73 V~~~~gD~~~~~--~~~~~fD~I~i~~~~~---------------------~~p~~l~~~LkpgG~lvi~~~ 121 (165)
.++++||+.+.+ -+++++|+|+.+.... ..-.++.+.|||||.+++...
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 356778876532 2346788888874431 011356789999999998655
No 367
>KOG2651|consensus
Probab=85.20 E-value=2.4 Score=36.22 Aligned_cols=51 Identities=10% Similarity=-0.055 Sum_probs=39.3
Q ss_pred HHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc
Q psy8015 14 VAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL 64 (165)
Q Consensus 14 ~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~ 64 (165)
+.+|-++...+ .+-+.|.|+ .|-||++..++-.. ..|++||-|....+.|+
T Consensus 138 i~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 138 IRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence 33444444333 567899999 99999999998654 58999999988888874
No 368
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.12 E-value=4.8 Score=31.82 Aligned_cols=91 Identities=11% Similarity=-0.050 Sum_probs=54.7
Q ss_pred CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC---CCCCCCCccEEEEc
Q psy8015 24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA---SFGDNGPYDAIHVG 96 (165)
Q Consensus 24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~---~~~~~~~fD~I~i~ 96 (165)
..++++||=. + +.|..+..+|+.. .+|+++..+++-.+.++ .+|.+.+-....+..+ .+ ...+|.++-.
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~i~~~--~~~~d~vl~~ 215 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK--ELGADEVVIDDGAIAEQLRAA--PGGFDKVLEL 215 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--hcCCcEEEecCccHHHHHHHh--CCCceEEEEC
Confidence 3578888765 3 4566666666654 47999998888777663 3454322111111100 11 2469988754
Q ss_pred CCCCCchHHHHhccccCcEEEEE
Q psy8015 97 AAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 97 ~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
... ...+..++.|+++|+++..
T Consensus 216 ~~~-~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 216 VGT-ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCh-HHHHHHHHHhccCCEEEEE
Confidence 443 4455667999999998653
No 369
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=84.92 E-value=4.3 Score=32.86 Aligned_cols=96 Identities=17% Similarity=0.041 Sum_probs=59.2
Q ss_pred cCCCCCeEEEE-cc--ccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCC---CCCCCCCCccEEE
Q psy8015 23 GHSKRLDCLAL-TS--NTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGR---ASFGDNGPYDAIH 94 (165)
Q Consensus 23 ~~~~~~~vLei-~G--sG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~---~~~~~~~~fD~I~ 94 (165)
...++++||=. ++ .|..++.+++..+ +|+.+..+++-.+.++ .+|.+.+--... |.. ..+.....+|.++
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl 239 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAK--ELGADAFVDFKKSDDVEAVKELTGGGGAHAVV 239 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH--HcCCcEEEcCCCccHHHHHHHHhcCCCCCEEE
Confidence 34678888877 43 6777777777654 8999999987776653 344332111111 110 0111234699888
Q ss_pred EcCCCCCchHHHHhccccCcEEEEEe
Q psy8015 95 VGAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 95 i~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
-+..........++.|+++|+++..-
T Consensus 240 ~~~~~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 240 VTAVSAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred EcCCchHHHHHHHHHhhcCCEEEEec
Confidence 54444445566789999999998753
No 370
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=84.81 E-value=1.4 Score=35.43 Aligned_cols=67 Identities=9% Similarity=-0.097 Sum_probs=45.0
Q ss_pred eEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC-CC-CccEEEEcCCCC
Q psy8015 29 DCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD-NG-PYDAIHVGAAYP 100 (165)
Q Consensus 29 ~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~-~~-~fD~I~i~~~~~ 100 (165)
+++|+ ||.|.++.-|.... ..|.++|+++.+.+.-+.. ++ ....+|..+.... .. .+|+++.+..+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N-~~----~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKAN-FP----EVICGDITEIDPSDLPKDVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHH-HT----EEEESHGGGCHHHHHHHT-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhc-cc----ccccccccccccccccccceEEEeccCCc
Confidence 79999 99999998887766 5789999999988866422 11 7788887653211 12 599888775543
No 371
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=84.60 E-value=0.17 Score=35.44 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=21.3
Q ss_pred CccEEEEcCCCCC------------chHHHHhccccCcEEEEE
Q psy8015 89 PYDAIHVGAAYPR------------YPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 89 ~fD~I~i~~~~~~------------~p~~l~~~LkpgG~lvi~ 119 (165)
.||+|++-..... +-..+.++|+|||++++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4888887543322 234678999999999985
No 372
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=84.17 E-value=1.1 Score=30.67 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=50.7
Q ss_pred eEEEEccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCchHHHHh
Q psy8015 29 DCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIH 108 (165)
Q Consensus 29 ~vLei~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~~l~~ 108 (165)
+||=+||+|..|..++. ++-+.++ +.|+ ++++......+.......||+|+++.-..+.-+.+.+
T Consensus 2 ~Ill~C~~GaSSs~la~------------km~~~a~--~~gi-~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~ 66 (99)
T cd05565 2 NVLVLCAGGGTSGLLAN------------ALNKGAK--ERGV-PLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKK 66 (99)
T ss_pred EEEEECCCCCCHHHHHH------------HHHHHHH--HCCC-cEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHH
Confidence 35523999988877764 3344443 3354 3665555543322223569999998888788888888
Q ss_pred ccccCcEEEEEec
Q psy8015 109 HLKSGGRLVIPIG 121 (165)
Q Consensus 109 ~LkpgG~lvi~~~ 121 (165)
.+.+.|.-|..+.
T Consensus 67 ~~~~~~ipv~~I~ 79 (99)
T cd05565 67 DTDRLGIKLVTTT 79 (99)
T ss_pred HhhhcCCCEEEeC
Confidence 8888888777665
No 373
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.03 E-value=1.1 Score=38.26 Aligned_cols=31 Identities=3% Similarity=-0.187 Sum_probs=26.8
Q ss_pred ccccHHH----HHHhccCCcEEEEeCCHHHHHhcc
Q psy8015 34 TSNTKQS----TTLPTFIPNSFNINVYYYLSGGPL 64 (165)
Q Consensus 34 ~GsG~~t----~~la~~~~~V~aiD~~~~~~~~A~ 64 (165)
.|+||++ ++||.++++|+++|++++-++.-+
T Consensus 6 iGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln 40 (414)
T COG1004 6 IGTGYVGLVTGACLAELGHEVVCVDIDESKVELLN 40 (414)
T ss_pred ECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHh
Confidence 5999976 678888899999999999998774
No 374
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.99 E-value=4.6 Score=31.49 Aligned_cols=80 Identities=9% Similarity=-0.047 Sum_probs=52.6
Q ss_pred CCCCeEEEE--ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCc
Q psy8015 25 SKRLDCLAL--TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRY 102 (165)
Q Consensus 25 ~~~~~vLei--~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~ 102 (165)
..++++|=+ -=+|..++.+.....+|+-+|++|.|-... ..||+|..+- -+..+.+|+|+=-.+..-+
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~l------p~~v~Fr~~~----~~~~G~~DlivDlTGlGG~ 112 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFL------PNNVKFRNLL----KFIRGEVDLIVDLTGLGGI 112 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcC------CCCccHhhhc----CCCCCceeEEEeccccCCC
Confidence 346777777 445655555444478999999999876433 2457777662 2234789998876666655
Q ss_pred hHHHHhccccCc
Q psy8015 103 PEIFIHHLKSGG 114 (165)
Q Consensus 103 p~~l~~~LkpgG 114 (165)
.++..+.+.|+-
T Consensus 113 ~Pe~L~~fnp~v 124 (254)
T COG4017 113 EPEFLAKFNPKV 124 (254)
T ss_pred CHHHHhccCCce
Confidence 555567788853
No 375
>KOG1198|consensus
Probab=83.71 E-value=2.1 Score=35.81 Aligned_cols=95 Identities=13% Similarity=-0.057 Sum_probs=56.2
Q ss_pred CCCCeEEEE-c--cccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCC-eEEEEccCCCCCCC--CCCccEEEEcC
Q psy8015 25 SKRLDCLAL-T--SNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGRASFGD--NGPYDAIHVGA 97 (165)
Q Consensus 25 ~~~~~vLei-~--GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~~~~~~--~~~fD~I~i~~ 97 (165)
++++.||=+ . |-|..+..+|+..+ ..+..-.+++-.+.++ ++|.+. +.+...|..+.... ...||+|+=..
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k--~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~v 233 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVK--KLGADEVVDYKDENVVELIKKYTGKGVDVVLDCV 233 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHH--HcCCcEeecCCCHHHHHHHHhhcCCCccEEEECC
Confidence 578888887 3 34456666676666 6666677777777664 344433 33333333322222 45799887666
Q ss_pred CCCCchHHHHhccccCcEEEEEec
Q psy8015 98 AYPRYPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 98 ~~~~~p~~l~~~LkpgG~lvi~~~ 121 (165)
+-+.........++.|+..++...
T Consensus 234 g~~~~~~~~~~l~~~g~~~~i~~~ 257 (347)
T KOG1198|consen 234 GGSTLTKSLSCLLKGGGGAYIGLV 257 (347)
T ss_pred CCCccccchhhhccCCceEEEEec
Confidence 555555565556666666666544
No 376
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=83.51 E-value=5.7 Score=32.73 Aligned_cols=92 Identities=8% Similarity=-0.050 Sum_probs=56.6
Q ss_pred CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccC---CC---CCCCCCCccEE
Q psy8015 24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADG---RA---SFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~---~~---~~~~~~~fD~I 93 (165)
..++++||-. + +.|..+..+++..+ +|++++.+++..+.++ .+|.+. ++..+. .. .+.+...+|.+
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~--~~g~~~--vv~~~~~~~~~~l~~~~~~~~vd~v 255 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR--RFGATH--TVNASEDDAVEAVRDLTDGRGADYA 255 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH--HhCCeE--EeCCCCccHHHHHHHHcCCCCCCEE
Confidence 3678899888 4 35666666776553 4999998888777663 344421 221111 00 11223469987
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+-........+..++.|+++|+++..
T Consensus 256 ld~~~~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 256 FEAVGRAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEcCCChHHHHHHHHHhhcCCeEEEE
Confidence 75444344456678999999998875
No 377
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.46 E-value=4.4 Score=36.60 Aligned_cols=84 Identities=4% Similarity=-0.079 Sum_probs=57.1
Q ss_pred ccccHHHHHHhccC----CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCCchH-
Q psy8015 34 TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPRYPE- 104 (165)
Q Consensus 34 ~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~~p~- 104 (165)
||.|-++..+++.. .+++.+|.|++.++.++. . +..++.||+.+. + ..-++.|.+++....++.-.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~---g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~ 480 (621)
T PRK03562 406 AGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--F---GMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQ 480 (621)
T ss_pred EecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--c---CCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHH
Confidence 89999888887742 479999999999998753 2 357899998752 1 22357898888655432221
Q ss_pred --HHHhccccCcEEEEEecC
Q psy8015 105 --IFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 105 --~l~~~LkpgG~lvi~~~~ 122 (165)
...+.+.|.-++++-..+
T Consensus 481 i~~~ar~~~p~~~iiaRa~d 500 (621)
T PRK03562 481 LVELVKEHFPHLQIIARARD 500 (621)
T ss_pred HHHHHHHhCCCCeEEEEECC
Confidence 335666777776664443
No 378
>PLN02702 L-idonate 5-dehydrogenase
Probab=83.26 E-value=7.9 Score=31.83 Aligned_cols=94 Identities=9% Similarity=0.038 Sum_probs=55.6
Q ss_pred CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEE---ccCCCC---C--CCCCCcc
Q psy8015 24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLI---ADGRAS---F--GDNGPYD 91 (165)
Q Consensus 24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~---gD~~~~---~--~~~~~fD 91 (165)
..++++||=. + +.|..+..+|+..+ .|++++.+++..+.++ .+|.+.+.... .+..+. + ...+.+|
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 256 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAK--QLGADEIVLVSTNIEDVESEVEEIQKAMGGGID 256 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HhCCCEEEecCcccccHHHHHHHHhhhcCCCCC
Confidence 3678888887 3 34556666666543 5899999888777654 33443322111 111110 1 1124689
Q ss_pred EEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 92 AIHVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 92 ~I~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
.++-...........++.|+++|+++..
T Consensus 257 ~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 257 VSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred EEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 8876544334456667999999997754
No 379
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=82.95 E-value=4.1 Score=33.05 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=54.2
Q ss_pred CCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeE-EEEccC---CCCCCCCCCccEEEEc
Q psy8015 25 SKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDY-DLIADG---RASFGDNGPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~gD~---~~~~~~~~~fD~I~i~ 96 (165)
.++++||=. +| .|..+..+|+..+ +|+.++.+++-.+.++ ++|.+.+- ....+. ...+.....+|.|+-.
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~ 239 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELAR--KMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEM 239 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HhCCcEEecCccccHHHHHHHhcCCCCCCEEEEC
Confidence 467888776 43 3666677776554 6888888887666553 33432211 111111 0012223468988764
Q ss_pred CCCCCchHHHHhccccCcEEEEEe
Q psy8015 97 AAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 97 ~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
...........+.|+++|+++..-
T Consensus 240 ~g~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 240 SGAPSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEe
Confidence 433333455678999999988864
No 380
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=82.92 E-value=3.8 Score=34.65 Aligned_cols=61 Identities=7% Similarity=0.026 Sum_probs=42.7
Q ss_pred EEecCCchHHHHHHHHH-----HhcC-CC-CCeEEEE-ccccHHHHHHhccC----------CcEEEEeCCHHHHHhcc
Q psy8015 4 VFVSGSVSGAVAKYVTY-----LSGH-SK-RLDCLAL-TSNTKQSTTLPTFI----------PNSFNINVYYYLSGGPL 64 (165)
Q Consensus 4 ~~~~~~~~~~~~~~l~~-----l~~~-~~-~~~vLei-~GsG~~t~~la~~~----------~~V~aiD~~~~~~~~A~ 64 (165)
+||+++++...+.++.. +..+ .| .-.++|+ .|.|.++.-+.+.. -+++-+|.|+++.+.=+
T Consensus 48 FiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk 126 (370)
T COG1565 48 FITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126 (370)
T ss_pred eeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence 57888888886654432 2211 22 4579999 99999987665532 37899999999987543
No 381
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=81.78 E-value=12 Score=29.60 Aligned_cols=93 Identities=10% Similarity=-0.052 Sum_probs=53.1
Q ss_pred cCCCCCeEEEE--ccccHHHHHHhccC-Cc-EEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccE
Q psy8015 23 GHSKRLDCLAL--TSNTKQSTTLPTFI-PN-SFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDA 92 (165)
Q Consensus 23 ~~~~~~~vLei--~GsG~~t~~la~~~-~~-V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~ 92 (165)
...++++||=. .+.|..++.+|+.. .+ |+++..+++-.+.+ +.+|.+. ++..+.. . .+.....+|+
T Consensus 126 ~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~--~~~g~~~--~~~~~~~~~~~~l~~~~~~~~vd~ 201 (312)
T cd08269 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALA--RELGATE--VVTDDSEAIVERVRELTGGAGADV 201 (312)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH--HHhCCce--EecCCCcCHHHHHHHHcCCCCCCE
Confidence 34678888776 33444445555544 35 99998888776644 2334321 1111110 0 1112245998
Q ss_pred EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 93 IHVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 93 I~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
++-........+...+.|+++|+++..
T Consensus 202 vld~~g~~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 202 VIEAVGHQWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred EEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 876543334455667999999998864
No 382
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=81.33 E-value=7.4 Score=32.15 Aligned_cols=93 Identities=8% Similarity=-0.063 Sum_probs=54.5
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCC-eEEEEc--cCC---CCCCCCCCccEE
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDH-DYDLIA--DGR---ASFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~g--D~~---~~~~~~~~fD~I 93 (165)
..++++||=. .+.|..++.+|+..+ .|++++.+++..+.++ ++|.+. +..... +.. ..+.. +.+|.+
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~--~~g~~~~v~~~~~~~~~~~~l~~~~~-~~~d~v 257 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAK--QLGATECINPRDQDKPIVEVLTEMTD-GGVDYA 257 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HhCCCeecccccccchHHHHHHHHhC-CCCcEE
Confidence 4678898887 344555566666554 4889998888877763 344422 111111 100 01112 468988
Q ss_pred EEcCCCCCchHHHHhccc-cCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLK-SGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~Lk-pgG~lvi~ 119 (165)
+-........+...+.|+ ++|+++..
T Consensus 258 id~~g~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 258 FEVIGSADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred EECCCCHHHHHHHHHHhccCCCEEEEE
Confidence 754433334455678899 99998864
No 383
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=81.27 E-value=5.2 Score=32.25 Aligned_cols=90 Identities=8% Similarity=-0.126 Sum_probs=51.4
Q ss_pred CCCeEEEE-ccccH---HHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccEEE
Q psy8015 26 KRLDCLAL-TSNTK---QSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDAIH 94 (165)
Q Consensus 26 ~~~~vLei-~GsG~---~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~I~ 94 (165)
++++++=+ .|+|. .+..+|+.. .+|++++.+++-.+.++ ++|.+. ++..+.. + .......+|.++
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~--~~g~~~--~i~~~~~~~~~~v~~~~~~~~~d~vi 217 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLK--KIGAEY--VLNSSDPDFLEDLKELIAKLNATIFF 217 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCcE--EEECCCccHHHHHHHHhCCCCCcEEE
Confidence 45555544 45554 445555554 47999999998777764 345432 2221111 0 111223589887
Q ss_pred EcCCCCCchHHHHhccccCcEEEEEe
Q psy8015 95 VGAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 95 i~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
-..+.+.. ....+.|+++|+++..-
T Consensus 218 d~~g~~~~-~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 218 DAVGGGLT-GQILLAMPYGSTLYVYG 242 (324)
T ss_pred ECCCcHHH-HHHHHhhCCCCEEEEEE
Confidence 54443333 44578899999998753
No 384
>KOG0822|consensus
Probab=81.24 E-value=3.9 Score=36.43 Aligned_cols=68 Identities=12% Similarity=-0.042 Sum_probs=45.1
Q ss_pred cEEEEeCCHHHHHhcc-cccCCCC-CeEEEEccCCCCCCC-CCCccEEEEc--C--CCCCch----HHHHhccccCcEEE
Q psy8015 49 NSFNINVYYYLSGGPL-SSTIDPD-HDYDLIADGRASFGD-NGPYDAIHVG--A--AYPRYP----EIFIHHLKSGGRLV 117 (165)
Q Consensus 49 ~V~aiD~~~~~~~~A~-~~~~~~~-nV~~~~gD~~~~~~~-~~~fD~I~i~--~--~~~~~p----~~l~~~LkpgG~lv 117 (165)
+++++|.+|.++-.-+ .+..+-+ .|+++..|-.. |.+ ..+.|.++.- | +..++. +...+.|||.|+-+
T Consensus 397 klyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~-w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 397 KLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRK-WNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred EEEEEecCcchhhhhhhhchhhhcCeeEEEeccccc-cCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 6899999999988764 2222233 59999999754 443 4678977653 2 223443 34568999997643
No 385
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=81.22 E-value=10 Score=30.63 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=53.1
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---------CCCCCCCCc
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---------ASFGDNGPY 90 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---------~~~~~~~~f 90 (165)
..++++||=. .+.|..+..+|+..+ .+++++.+++..+.++ ++|.+ .++..+.. ........+
T Consensus 159 ~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~--~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd08262 159 LTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALAL--AMGAD--IVVDPAADSPFAAWAAELARAGGPKP 234 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HcCCc--EEEcCCCcCHHHHHHHHHHHhCCCCC
Confidence 3678888777 444455555665543 4888998888887764 23332 11111110 001122459
Q ss_pred cEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 91 DAIHVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 91 D~I~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
|.++-...........++.|+++|+++..
T Consensus 235 d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 235 AVIFECVGAPGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred CEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 98874333223455667899999998764
No 386
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.04 E-value=16 Score=31.11 Aligned_cols=82 Identities=9% Similarity=-0.050 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCC-CCCeEEEEccccHHHHHHhccC----CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C-
Q psy8015 13 AVAKYVTYLSGHS-KRLDCLALTSNTKQSTTLPTFI----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F- 84 (165)
Q Consensus 13 ~~~~~l~~l~~~~-~~~~vLei~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~- 84 (165)
...++.+.+.... +.++++= ||.|.++..+++.. .+|+.+|.+++.++..+.+ ..++.++.||+.+. +
T Consensus 216 ~l~~~~~~~~~~~~~~~~iiI-iG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~---~~~~~~i~gd~~~~~~L~ 291 (453)
T PRK09496 216 HIRAVMSEFGRLEKPVKRVMI-VGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE---LPNTLVLHGDGTDQELLE 291 (453)
T ss_pred HHHHHHHHhCccCCCCCEEEE-ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---CCCCeEEECCCCCHHHHH
Confidence 4455555553321 2344432 79999988877743 4799999999988866422 13578899998642 1
Q ss_pred -CCCCCccEEEEcCC
Q psy8015 85 -GDNGPYDAIHVGAA 98 (165)
Q Consensus 85 -~~~~~fD~I~i~~~ 98 (165)
.....+|.+++...
T Consensus 292 ~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 292 EEGIDEADAFIALTN 306 (453)
T ss_pred hcCCccCCEEEECCC
Confidence 12357898887544
No 387
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=80.93 E-value=1.1 Score=30.31 Aligned_cols=78 Identities=10% Similarity=-0.075 Sum_probs=46.7
Q ss_pred EEEEccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCchHHHHhc
Q psy8015 30 CLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHH 109 (165)
Q Consensus 30 vLei~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~ 109 (165)
||=+||+|..|..++.. +-+. +++.|+ ++++...+..+.......||+|++..-..+.-+.+.+.
T Consensus 2 Il~~Cg~G~sTS~~~~k------------i~~~--~~~~~~-~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~ 66 (96)
T cd05564 2 ILLVCSAGMSTSILVKK------------MKKA--AEKRGI-DAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKK 66 (96)
T ss_pred EEEEcCCCchHHHHHHH------------HHHH--HHHCCC-ceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHH
Confidence 34339999988876532 2222 234455 36666666543211235699999977776666777666
Q ss_pred cccCcEEEEEecC
Q psy8015 110 LKSGGRLVIPIGD 122 (165)
Q Consensus 110 LkpgG~lvi~~~~ 122 (165)
..+.+.-+..++.
T Consensus 67 ~~~~~~pv~~I~~ 79 (96)
T cd05564 67 AAEYGIPVAVIDM 79 (96)
T ss_pred hccCCCcEEEcCh
Confidence 6666665665543
No 388
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=80.34 E-value=10 Score=30.11 Aligned_cols=82 Identities=5% Similarity=-0.115 Sum_probs=45.2
Q ss_pred cHHHHHHhccCCcEEEEeCCHHHHHhcc-----cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCch---HHHHh
Q psy8015 37 TKQSTTLPTFIPNSFNINVYYYLSGGPL-----SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYP---EIFIH 108 (165)
Q Consensus 37 G~~t~~la~~~~~V~aiD~~~~~~~~A~-----~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p---~~l~~ 108 (165)
++++..|++...+|+.+++++. ++..+ +...+ .+..+....+.....+..+||.|++.--..... +.+..
T Consensus 4 ~~~a~~L~~~G~~V~l~~r~~~-~~~i~~~Gl~i~~~~-~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~~~~~~l~~l~~ 81 (293)
T TIGR00745 4 SLYGAYLARAGHDVTLLARGEQ-LEALNQEGLRIVSLG-GEFQFRPVSAATSPEELPPADLVIITVKAYQTEEAAALLLP 81 (293)
T ss_pred HHHHHHHHhCCCcEEEEecHHH-HHHHHHCCcEEEecC-CcEEEcccccccChhhcCCCCEEEEeccchhHHHHHHHhHh
Confidence 4678888887789999999743 33222 11111 112221112222222245899999975544443 34566
Q ss_pred ccccCcEEEEEe
Q psy8015 109 HLKSGGRLVIPI 120 (165)
Q Consensus 109 ~LkpgG~lvi~~ 120 (165)
.+.++..++...
T Consensus 82 ~l~~~~~iv~~q 93 (293)
T TIGR00745 82 LIGKNTKVLFLQ 93 (293)
T ss_pred hcCCCCEEEEcc
Confidence 777777666543
No 389
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=80.28 E-value=14 Score=28.84 Aligned_cols=91 Identities=13% Similarity=-0.030 Sum_probs=48.7
Q ss_pred CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CCCCCCccEEEEcC
Q psy8015 24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FGDNGPYDAIHVGA 97 (165)
Q Consensus 24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~~~~~fD~I~i~~ 97 (165)
..++++||=. + +.|..++.+++.. .+|+.++.++ ..+.++ .++... ++....... ......+|.++-..
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~--~~g~~~--~~~~~~~~~~~~~~~~~~d~v~~~~ 216 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLR--SLGADE--VIDYTKGDFERAAAPGGVDAVLDTV 216 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHH--HcCCCE--EEeCCCCchhhccCCCCceEEEECC
Confidence 3578888744 3 2344444455443 4788887666 444442 234321 111111000 12234689887643
Q ss_pred CCCCchHHHHhccccCcEEEEEe
Q psy8015 98 AYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 98 ~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
... .....++.|+++|+++..-
T Consensus 217 ~~~-~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 217 GGE-TLARSLALVKPGGRLVSIA 238 (309)
T ss_pred chH-HHHHHHHHHhcCcEEEEEc
Confidence 333 4456678999999987653
No 390
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=80.18 E-value=0.31 Score=34.81 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=31.8
Q ss_pred CeEEEEccCCCCCCC-CCCccEEEEcCCCC-Cch--------HHHHhccccCcEEEEEe
Q psy8015 72 HDYDLIADGRASFGD-NGPYDAIHVGAAYP-RYP--------EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 72 nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~-~~p--------~~l~~~LkpgG~lvi~~ 120 (165)
++++..||+.+.++. ...||+||.++-.+ .-| ..+.+.++|||++....
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee
Confidence 468889998654433 36899999997544 333 36789999999988754
No 391
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=80.16 E-value=8.2 Score=31.19 Aligned_cols=91 Identities=4% Similarity=-0.018 Sum_probs=51.8
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccEE
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~I 93 (165)
..++++||=. .+.|..+..+|+..+ +|++++.+++-.+.++ ++|.. .+..+-. . ...+...+|++
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~--~~g~~---~~~~~~~~~~~~l~~~~~~~~~dvv 239 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAA--ALGAE---PINFEDAEPVERVREATEGRGADVV 239 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH--HhCCe---EEecCCcCHHHHHHHHhCCCCCCEE
Confidence 3577888666 233444455555544 6999988876666543 23431 1211111 0 01122468987
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+-........+...+.|+++|+++..
T Consensus 240 id~~~~~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 240 LEAVGGAAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred EECCCCHHHHHHHHHhcccCCEEEEE
Confidence 76444334455667899999997764
No 392
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=80.00 E-value=4.9 Score=33.52 Aligned_cols=95 Identities=8% Similarity=-0.030 Sum_probs=53.3
Q ss_pred cCCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEc----cC---CCCCCCCCCcc
Q psy8015 23 GHSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIA----DG---RASFGDNGPYD 91 (165)
Q Consensus 23 ~~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g----D~---~~~~~~~~~fD 91 (165)
..+++++||=. .+.|..+..+|+..+ +|++++.+++..+.++ ++|.+.+--... +. ...+.....+|
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~--~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvD 277 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAK--EMGADYVFNPTKMRDCLSGEKVMEVTKGWGAD 277 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HcCCCEEEcccccccccHHHHHHHhcCCCCCC
Confidence 34678888776 333444455555543 6999999888666553 334432110110 10 00112234699
Q ss_pred EEEEcCCCC-CchHHHHhccccCcEEEEE
Q psy8015 92 AIHVGAAYP-RYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 92 ~I~i~~~~~-~~p~~l~~~LkpgG~lvi~ 119 (165)
.|+-..+.+ ...+...+.|+++|+++..
T Consensus 278 vvld~~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 278 IQVEAAGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred EEEECCCCcHHHHHHHHHHHHcCCEEEEE
Confidence 887543322 2345667899999998864
No 393
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=79.85 E-value=16 Score=29.69 Aligned_cols=90 Identities=12% Similarity=0.051 Sum_probs=53.4
Q ss_pred CCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC------CCCCCCCCccEEE
Q psy8015 25 SKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR------ASFGDNGPYDAIH 94 (165)
Q Consensus 25 ~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~------~~~~~~~~fD~I~ 94 (165)
.++++||=. .+.|..++.+|+..+ +|+.++.+++-.+.++ ++|.+ .++..+-. ..... +.+|.++
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~--~~g~~--~~~~~~~~~~~~~~~~~~~-~~~d~vi 248 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAK--AAGAD--VVVNGSDPDAAKRIIKAAG-GGVDAVI 248 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HhCCc--EEecCCCccHHHHHHHHhC-CCCcEEE
Confidence 367888887 334555555665543 7899998888777663 33432 12211100 00111 2689887
Q ss_pred EcCCCCCchHHHHhccccCcEEEEE
Q psy8015 95 VGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 95 i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
-........+..++.|+++|+++..
T Consensus 249 d~~g~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 249 DFVNNSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred ECCCCHHHHHHHHHHhhcCCeEEEE
Confidence 5443334456678999999998863
No 394
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.82 E-value=13 Score=28.15 Aligned_cols=72 Identities=8% Similarity=-0.144 Sum_probs=44.2
Q ss_pred CCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC----------CCCCC
Q psy8015 26 KRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF----------GDNGP 89 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~----------~~~~~ 89 (165)
+++++|=.-|+|.++..+++. ..+|+.++.+++-.+... ++. ..+++++..|..+.. ...+.
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK--YGNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 356666555557666666654 358999999987665442 222 236888888875311 01235
Q ss_pred ccEEEEcCCC
Q psy8015 90 YDAIHVGAAY 99 (165)
Q Consensus 90 fD~I~i~~~~ 99 (165)
.|.++.+.+.
T Consensus 82 id~ii~~ag~ 91 (238)
T PRK05786 82 IDGLVVTVGG 91 (238)
T ss_pred CCEEEEcCCC
Confidence 7988887653
No 395
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=79.76 E-value=19 Score=29.10 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=51.2
Q ss_pred CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC----CCCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR----ASFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~----~~~~~~~~fD~I~i 95 (165)
..++++||=. + +.|..+..+|+.. .+|++++.++ ..+.+ +.+|.+ .+...+-. ........+|.++-
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~--~~~g~~--~~~~~~~~~~~~~~~~~~~~~d~vi~ 249 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAV--RALGAD--TVILRDAPLLADAKALGGEPVDVVAD 249 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHH--HhcCCe--EEEeCCCccHHHHHhhCCCCCcEEEe
Confidence 4678888877 4 4455555566544 4788887654 44444 334542 22211110 00112346998875
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
.... ...+...+.|+++|+++..
T Consensus 250 ~~g~-~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 250 VVGG-PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred cCCH-HHHHHHHHHhccCCEEEEe
Confidence 4332 3445667999999998753
No 396
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=79.60 E-value=5.3 Score=34.49 Aligned_cols=83 Identities=6% Similarity=-0.150 Sum_probs=51.6
Q ss_pred CCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015 26 KRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR 101 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~ 101 (165)
++++|+=+ |.|..+..++.. ..+|+.+|+++.....|... |.. +. +..+.. ..+|+|+......+
T Consensus 211 ~Gk~VlVi-G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~--G~~---v~--~l~eal---~~aDVVI~aTG~~~ 279 (425)
T PRK05476 211 AGKVVVVA-GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD--GFR---VM--TMEEAA---ELGDIFVTATGNKD 279 (425)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc--CCE---ec--CHHHHH---hCCCEEEECCCCHH
Confidence 67888766 666666555543 35899999999776555321 321 11 111111 25898887655555
Q ss_pred ch-HHHHhccccCcEEEEE
Q psy8015 102 YP-EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 102 ~p-~~l~~~LkpgG~lvi~ 119 (165)
+. ...++.+|+|++++..
T Consensus 280 vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 280 VITAEHMEAMKDGAILANI 298 (425)
T ss_pred HHHHHHHhcCCCCCEEEEc
Confidence 44 4678999999876654
No 397
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=79.49 E-value=1.5 Score=33.38 Aligned_cols=31 Identities=3% Similarity=-0.220 Sum_probs=20.6
Q ss_pred ccccHHHHHHh----ccCCcEEEEeCCHHHHHhcc
Q psy8015 34 TSNTKQSTTLP----TFIPNSFNINVYYYLSGGPL 64 (165)
Q Consensus 34 ~GsG~~t~~la----~~~~~V~aiD~~~~~~~~A~ 64 (165)
.|.||.+..+| +.+.+|+++|++++.++..+
T Consensus 6 iGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 6 IGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp E--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred ECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 58898875544 45579999999999888764
No 398
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=79.08 E-value=26 Score=28.24 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=56.0
Q ss_pred cCCCCCeEEEE-c-cccHHHHHHhccC-Cc-EEEEeCCHHHHHhcccccCCCCCeEEEEccCC------CCCCCCCCccE
Q psy8015 23 GHSKRLDCLAL-T-SNTKQSTTLPTFI-PN-SFNINVYYYLSGGPLSSTIDPDHDYDLIADGR------ASFGDNGPYDA 92 (165)
Q Consensus 23 ~~~~~~~vLei-~-GsG~~t~~la~~~-~~-V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~------~~~~~~~~fD~ 92 (165)
...++++||=. + +.|..++.+|+.. .+ |++++.+++..+.++ .++.+ .++..+-. ........+|+
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~--~~g~~--~~~~~~~~~~~~~i~~~~~~~~vd~ 237 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK--KLGAD--YTIDAAEEDLVEKVRELTDGRGADV 237 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HhCCc--EEecCCccCHHHHHHHHhCCcCCCE
Confidence 34678888777 3 3555555666554 36 889998888777653 23432 12211110 01122235898
Q ss_pred EEEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015 93 IHVGAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 93 I~i~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
++-...........++.|+++|+++..-
T Consensus 238 vld~~~~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 238 VIVATGSPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred EEECCCChHHHHHHHHHhhcCCEEEEEe
Confidence 8865544445556679999999988643
No 399
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=78.89 E-value=16 Score=28.47 Aligned_cols=91 Identities=12% Similarity=-0.037 Sum_probs=53.9
Q ss_pred CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC------CCCCCCCCccEE
Q psy8015 24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR------ASFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~------~~~~~~~~fD~I 93 (165)
..++++||=. + +.|..+..+++.. .+|++++.+++..+.++ .+|.+. ++..+-. ..+.....+|.+
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~--~~~~~~~~~~~~~~~~~~~~~~d~v 209 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELAR--AAGADH--VINYRDEDFVERVREITGGRGVDVV 209 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH--HCCCCE--EEeCCchhHHHHHHHHcCCCCeeEE
Confidence 3577888755 3 3445555555544 47999998888777663 234422 1111110 011223469988
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+-.... ...+..++.|+++|+++..
T Consensus 210 l~~~~~-~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 210 YDGVGK-DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred EECCCc-HhHHHHHHhhccCcEEEEE
Confidence 865443 4556678999999998864
No 400
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=78.86 E-value=5.6 Score=32.87 Aligned_cols=71 Identities=11% Similarity=0.012 Sum_probs=47.7
Q ss_pred CCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCC--C-CccEEEEcCCCC
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDN--G-PYDAIHVGAAYP 100 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~--~-~fD~I~i~~~~~ 100 (165)
..+++|+ ||.|.+..-+...+ .-+.++|+++..++.=+.. .+.-.++..|..+...+. . .+|+++-+..+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n---~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKAN---FPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHh---CCCCceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 4689999 99999998777766 5689999999999865421 112455666654322211 1 688887765443
No 401
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=78.06 E-value=10 Score=33.00 Aligned_cols=71 Identities=10% Similarity=-0.040 Sum_probs=47.5
Q ss_pred CCeEEEE--ccccHHHH-HHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 27 RLDCLAL--TSNTKQST-TLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 27 ~~~vLei--~GsG~~t~-~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
+++|+=+ -.||..++ .|.+...+|+..|.++........ .+-.+++++..|.-.. .....||.|+.+.+.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~--~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDD--EDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhh-hhhccCceeecCccch--hccccCCEEEECCCCC
Confidence 7888888 55665544 344456799999998888222212 2234678888887544 2235799999998876
No 402
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=78.03 E-value=2.4 Score=28.67 Aligned_cols=80 Identities=10% Similarity=-0.049 Sum_probs=47.9
Q ss_pred CeEEEEccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCchHHHH
Q psy8015 28 LDCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFI 107 (165)
Q Consensus 28 ~~vLei~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~~l~ 107 (165)
.+||=+||+|..|..++. ++-+.+ ++.|+ ++++...+..+.......||+|+++.-..+.-+++.
T Consensus 4 ~~ILl~C~~G~sSS~l~~------------k~~~~~--~~~gi-~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~ 68 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVN------------KMNKAA--EEYGV-PVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLK 68 (95)
T ss_pred cEEEEECCCchhHHHHHH------------HHHHHH--HHCCC-cEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHH
Confidence 577744999988876653 223333 33344 356666554332112246899999877766667776
Q ss_pred hccccCcEEEEEecC
Q psy8015 108 HHLKSGGRLVIPIGD 122 (165)
Q Consensus 108 ~~LkpgG~lvi~~~~ 122 (165)
+...+-|.=|..++.
T Consensus 69 ~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 69 KETDKKGIPVEVING 83 (95)
T ss_pred HHhhhcCCCEEEeCh
Confidence 666665655555543
No 403
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=77.81 E-value=43 Score=28.55 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=60.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCeEEEE-ccccH-----HHHHHhccCCcEEEE-----eCCHHHHHhcccccCCCCCeEEE
Q psy8015 8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTK-----QSTTLPTFIPNSFNI-----NVYYYLSGGPLSSTIDPDHDYDL 76 (165)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~-----~t~~la~~~~~V~ai-----D~~~~~~~~A~~~~~~~~nV~~~ 76 (165)
+.|..+...+++.+.. +.+.++-. ||+|- .+...+...|..+++ |.--++...-+ ..+....+...
T Consensus 100 ~~Q~~as~~l~q~i~~--k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk-~aF~~~~I~~L 176 (441)
T COG4098 100 PGQKKASNQLVQYIKQ--KEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLK-QAFSNCDIDLL 176 (441)
T ss_pred hhHHHHHHHHHHHHHh--cCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHH-HhhccCCeeeE
Confidence 3355566677777753 34455555 99994 444444333333332 33222222211 01111246667
Q ss_pred EccCCC-------------CCCCCCCccEEEEcCC--CCCchH-----HHHhccccCcEEEEEecCCC
Q psy8015 77 IADGRA-------------SFGDNGPYDAIHVGAA--YPRYPE-----IFIHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 77 ~gD~~~-------------~~~~~~~fD~I~i~~~--~~~~p~-----~l~~~LkpgG~lvi~~~~~~ 124 (165)
.||... .+.-...||.++++-. +|...+ .+.+..|++|-.+....+++
T Consensus 177 yg~S~~~fr~plvVaTtHQLlrFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~ 244 (441)
T COG4098 177 YGDSDSYFRAPLVVATTHQLLRFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPT 244 (441)
T ss_pred ecCCchhccccEEEEehHHHHHHHhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCCh
Confidence 776532 2222358999999854 343332 45678889888887766554
No 404
>PRK08324 short chain dehydrogenase; Validated
Probab=77.73 E-value=6 Score=35.96 Aligned_cols=71 Identities=8% Similarity=-0.108 Sum_probs=45.1
Q ss_pred CCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC----------CCCCCc
Q psy8015 27 RLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF----------GDNGPY 90 (165)
Q Consensus 27 ~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~----------~~~~~f 90 (165)
++++|=.-|+|.++..+++. ..+|+.+|++++-++.+. +... .++.++..|..+.- ...+.+
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45665335577777666654 358999999988766543 2221 46888888865311 012468
Q ss_pred cEEEEcCCC
Q psy8015 91 DAIHVGAAY 99 (165)
Q Consensus 91 D~I~i~~~~ 99 (165)
|.++.+++.
T Consensus 500 DvvI~~AG~ 508 (681)
T PRK08324 500 DIVVSNAGI 508 (681)
T ss_pred CEEEECCCC
Confidence 999888763
No 405
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=77.69 E-value=1.6 Score=35.82 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=34.4
Q ss_pred eEEEEccCCCCCCC----CCCccEEEEcCCC-CCchHHHHhccccCcEEEEEe
Q psy8015 73 DYDLIADGRASFGD----NGPYDAIHVGAAY-PRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 73 V~~~~gD~~~~~~~----~~~fD~I~i~~~~-~~~p~~l~~~LkpgG~lvi~~ 120 (165)
|+|+-.|....++. .+.||+||++... +.+.+.+.+.++|+|+|++-.
T Consensus 202 VhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~l~~~~a~~A~LvvEt 254 (289)
T PF14740_consen 202 VHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPELFQALAPDAVLVVET 254 (289)
T ss_pred EEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchHHHHHhCCCCEEEEEc
Confidence 56665555443322 3689999998775 456667999999999998843
No 406
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=77.66 E-value=3.8 Score=32.78 Aligned_cols=91 Identities=8% Similarity=-0.024 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC----C
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS----F 84 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~----~ 84 (165)
.+...+.+++.+....++.. |.. .||=.++..+.+-..+.+..|+.++-.+.-+..-.+-.+|++.+.|++++ +
T Consensus 42 ~p~~l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~all 120 (245)
T PF04378_consen 42 LPPALQPYLDAVRALNPDGE-LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKALL 120 (245)
T ss_dssp S-GGGHHHHHHHHHHSSSSS---EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHHH-
T ss_pred chHHHHHHHHHHHHhccCCC-cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhhhC
Confidence 44556667776644334333 889 99999999999988999999999998886642111335799999998763 3
Q ss_pred CCCCCccEEEEcCCCCC
Q psy8015 85 GDNGPYDAIHVGAAYPR 101 (165)
Q Consensus 85 ~~~~~fD~I~i~~~~~~ 101 (165)
|+..+==+|+|+..++.
T Consensus 121 PP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 121 PPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp S-TTS-EEEEE-----S
T ss_pred CCCCCCeEEEECCCCCC
Confidence 44444458999987763
No 407
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=77.11 E-value=9.3 Score=30.67 Aligned_cols=95 Identities=11% Similarity=-0.035 Sum_probs=48.5
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccCC-cEEEEeC--CHHHHHhcccccCCCCCeEEEEccCCC---CCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFIP-NSFNINV--YYYLSGGPLSSTIDPDHDYDLIADGRA---SFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~~-~V~aiD~--~~~~~~~A~~~~~~~~nV~~~~gD~~~---~~~~~~~fD~I~i 95 (165)
..++++||=- .+.|..+..+|+..+ +|+.+.. +++-.+.++ .+|.+.+.....|... .......+|.++-
T Consensus 162 ~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~l~~~~~~~~vd~vld 239 (306)
T cd08258 162 IRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAK--ELGADAVNGGEEDLAELVNEITDGDGADVVIE 239 (306)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHH--HhCCcccCCCcCCHHHHHHHHcCCCCCCEEEE
Confidence 3577787655 334555555665543 7777643 333333332 2343222001111100 1112346898876
Q ss_pred cCCCCCchHHHHhccccCcEEEEEe
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
............+.|+++|+++..-
T Consensus 240 ~~g~~~~~~~~~~~l~~~G~~v~~g 264 (306)
T cd08258 240 CSGAVPALEQALELLRKGGRIVQVG 264 (306)
T ss_pred CCCChHHHHHHHHHhhcCCEEEEEc
Confidence 5433334455678999999988643
No 408
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=77.10 E-value=34 Score=26.89 Aligned_cols=88 Identities=10% Similarity=0.006 Sum_probs=53.0
Q ss_pred CCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 25 SKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 25 ~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
.++++||=. + +.|..+..+++.. .+|+.++.+++-.+.++ ++|.+.+ +...+ .+.. +.+|.++-....
T Consensus 131 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~~-~~~~~---~~~~-~~~d~vl~~~g~- 202 (305)
T cd08270 131 LLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLR--ELGAAEV-VVGGS---ELSG-APVDLVVDSVGG- 202 (305)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCcEE-Eeccc---cccC-CCceEEEECCCc-
Confidence 357787765 4 3455555555543 58999998888777664 2454321 11111 1111 368988754333
Q ss_pred CchHHHHhccccCcEEEEEe
Q psy8015 101 RYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 101 ~~p~~l~~~LkpgG~lvi~~ 120 (165)
...+..++.|+++|+++..-
T Consensus 203 ~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 203 PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred HHHHHHHHHhcCCCEEEEEe
Confidence 34456789999999988753
No 409
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=77.00 E-value=28 Score=25.96 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=56.6
Q ss_pred CCCCeEEEE-ccccHHHHHH-hccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CCC--CCCccEEEEcCC
Q psy8015 25 SKRLDCLAL-TSNTKQSTTL-PTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FGD--NGPYDAIHVGAA 98 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~l-a~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~~--~~~fD~I~i~~~ 98 (165)
.++.+|+=| |=|=|.+..- .....+++-+|+|.+..... - + +|+.=|..++ +++ .++||+|+++..
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~------~-~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPP 95 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG------G-D-EFVFYDYNEPEELPEELKGKFDVVVIDPP 95 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC------C-c-ceEECCCCChhhhhhhcCCCceEEEECCC
Confidence 457889999 7777666554 12346899999998766533 1 2 3444443321 221 368999999877
Q ss_pred CCCchH--------HHHhccccCcEEEEEecCC
Q psy8015 99 YPRYPE--------IFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 99 ~~~~p~--------~l~~~LkpgG~lvi~~~~~ 123 (165)
. +.+ .+..++|++++++...+..
T Consensus 96 F--l~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 96 F--LSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred C--CCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 6 333 3445668889988877643
No 410
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=76.67 E-value=18 Score=30.78 Aligned_cols=100 Identities=15% Similarity=0.033 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhc---ccccCCCC--CeEEEEccCCCCCCC
Q psy8015 13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGP---LSSTIDPD--HDYDLIADGRASFGD 86 (165)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A---~~~~~~~~--nV~~~~gD~~~~~~~ 86 (165)
+=..+++.+.......+||=+ =.-|.+|..|+. ..++.+ -|..+.+.| +++..|++ ++++... ...++
T Consensus 31 ade~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~--~~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~~~~- 104 (378)
T PRK15001 31 ADEYLLQQLDDTEIRGPVLILNDAFGALSCALAE--HKPYSI-GDSYISELATRENLRLNGIDESSVKFLDS--TADYP- 104 (378)
T ss_pred HHHHHHHHHhhcccCCCEEEEcCchhHHHHHHHh--CCCCee-ehHHHHHHHHHHHHHHcCCCcccceeecc--ccccc-
Confidence 345677777543222389999 999999999994 333333 455555555 35555554 4555533 33333
Q ss_pred CCCccEEEEcCCCCC-----chHHHHhccccCcEEEEE
Q psy8015 87 NGPYDAIHVGAAYPR-----YPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 87 ~~~fD~I~i~~~~~~-----~p~~l~~~LkpgG~lvi~ 119 (165)
+.+|.|++--.... ....+...|.||+.+++.
T Consensus 105 -~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 105 -QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred -CCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 45999999655431 223567899999997654
No 411
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=76.57 E-value=6.9 Score=30.57 Aligned_cols=61 Identities=11% Similarity=-0.030 Sum_probs=42.7
Q ss_pred ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CC--CCCCccEEEEcC
Q psy8015 34 TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FG--DNGPYDAIHVGA 97 (165)
Q Consensus 34 ~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~--~~~~fD~I~i~~ 97 (165)
.|.|-++..+|+. ...|+.+|.+++.++....+. .....+++|+.+. +. ....+|++++..
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~---~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE---LDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh---cceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6888888777764 468999999999988743211 2478888998641 11 235799888854
No 412
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=76.55 E-value=6 Score=31.86 Aligned_cols=92 Identities=10% Similarity=-0.056 Sum_probs=52.9
Q ss_pred cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcc-cccCCCCCeEEEEccCCCCCCCCCCccEEEEcC
Q psy8015 23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPL-SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGA 97 (165)
Q Consensus 23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~ 97 (165)
...++++||=. + +.|..++.+++.. .+|+.++.+++..+.++ + ....-+.+ +........+.+|.++-..
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~v~~~~~~d~~ld~~ 233 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS----KFSEEVKKIGGADIVIETV 233 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch----hHHHHHHhcCCCcEEEEcC
Confidence 34677887766 4 4566667777655 48999999888777663 2 00000101 1000000112588887543
Q ss_pred CCCCchHHHHhccccCcEEEEEe
Q psy8015 98 AYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 98 ~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
.. .......+.|+++|+++..-
T Consensus 234 g~-~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 234 GT-PTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred Ch-HHHHHHHHHHhcCCEEEEEe
Confidence 33 33456789999999977643
No 413
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=76.36 E-value=9.7 Score=30.88 Aligned_cols=93 Identities=8% Similarity=-0.066 Sum_probs=53.8
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEc--cCCC---CCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA--DGRA---SFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g--D~~~---~~~~~~~fD~I~i 95 (165)
..++++||=. .+.|..+..+|+.. -+|++++.+++..+.++ ++|.+.+--... +... .+... .+|.++-
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~-~~d~vi~ 239 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELAR--ELGAVATVNASEVEDVAAAVRDLTGG-GAHVSVD 239 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH--HhCCCEEEccccchhHHHHHHHHhCC-CCCEEEE
Confidence 3567888766 34455555566544 38999999888777663 345432211111 1100 01112 6998886
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
...........++.|+++|+++..
T Consensus 240 ~~g~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 240 ALGIPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred cCCCHHHHHHHHHHhhcCCEEEEe
Confidence 533233345567999999998764
No 414
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=76.22 E-value=12 Score=32.11 Aligned_cols=84 Identities=5% Similarity=-0.179 Sum_probs=51.2
Q ss_pred CCCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 25 SKRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 25 ~~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
.+|++|+=+ |.|..+..+++. ..+|+.+|.++.....|+. .|. ++. +..+.. ...|+++......
T Consensus 193 l~Gk~VvVi-G~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~--~G~---~v~--~leeal---~~aDVVItaTG~~ 261 (406)
T TIGR00936 193 IAGKTVVVA-GYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM--DGF---RVM--TMEEAA---KIGDIFITATGNK 261 (406)
T ss_pred CCcCEEEEE-CCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh--cCC---EeC--CHHHHH---hcCCEEEECCCCH
Confidence 367888776 666666555543 3589999999976555532 232 111 111111 2469887765555
Q ss_pred C-chHHHHhccccCcEEEEE
Q psy8015 101 R-YPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 101 ~-~p~~l~~~LkpgG~lvi~ 119 (165)
+ +..+.+..+|+|++++..
T Consensus 262 ~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 262 DVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred HHHHHHHHhcCCCCcEEEEE
Confidence 5 445678999999987654
No 415
>KOG2782|consensus
Probab=75.98 E-value=2.3 Score=33.84 Aligned_cols=57 Identities=7% Similarity=0.003 Sum_probs=47.5
Q ss_pred cCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc
Q psy8015 7 SGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL 64 (165)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~ 64 (165)
++-||-+....++.|.+ .++...+|. -|+|--|..+-+-+ -+++++|.+|-+.+.|+
T Consensus 25 ~~HVPVm~devl~~lsp-v~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~ 84 (303)
T KOG2782|consen 25 SSHVPVMLDEVLDILSP-VRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAH 84 (303)
T ss_pred ccCCceehhhHHHHcCC-CCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHH
Confidence 44577888899999975 799999999 99988777666655 47999999999999886
No 416
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=75.91 E-value=9 Score=30.66 Aligned_cols=94 Identities=10% Similarity=-0.029 Sum_probs=52.4
Q ss_pred CCCeEEEE-ccccHHHHHHhcc-------CCcEEEEeCCHH--------------------------HHHhc--ccccCC
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTF-------IPNSFNINVYYY--------------------------LSGGP--LSSTID 69 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~-------~~~V~aiD~~~~--------------------------~~~~A--~~~~~~ 69 (165)
-...++|. +=-|..+..++.. ..+++..|.-+. -.+.. ++++.|
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 45789999 8888776554332 146888873221 11111 144555
Q ss_pred C--CCeEEEEccCCCCCCC--CCCccEEEEcCCCC----CchHHHHhccccCcEEEEE
Q psy8015 70 P--DHDYDLIADGRASFGD--NGPYDAIHVGAAYP----RYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 70 ~--~nV~~~~gD~~~~~~~--~~~fD~I~i~~~~~----~~p~~l~~~LkpgG~lvi~ 119 (165)
+ +|++++.|...+.++. ..++-.+.+++..- ...+.+...|.|||.+++-
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~D 211 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFD 211 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEe
Confidence 4 5799999997655553 34566666665542 2235678999999998873
No 417
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.81 E-value=10 Score=31.71 Aligned_cols=120 Identities=9% Similarity=-0.056 Sum_probs=71.3
Q ss_pred ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEc----CCC-CC-ch
Q psy8015 34 TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVG----AAY-PR-YP 103 (165)
Q Consensus 34 ~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~----~~~-~~-~p 103 (165)
-|-|......|+. ...|+-+|+|.+.+++-.-. ++ .+++....+..+.-......|.++-. ++. |. +.
T Consensus 174 iGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~-f~-~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt 251 (371)
T COG0686 174 LGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL-FG-GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVT 251 (371)
T ss_pred ECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh-hC-ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehh
Confidence 4556555555543 36999999999988766411 11 23666665543322223457866543 222 22 34
Q ss_pred HHHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015 104 EIFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV 155 (165)
Q Consensus 104 ~~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~ 155 (165)
.+..+++|||..++=+..+.+. -.-...+.+.+-.|....+.-..-+.|.+.
T Consensus 252 ~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~~gvvhY~VaNmPga 304 (371)
T COG0686 252 REMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEVDGVVHYGVANMPGA 304 (371)
T ss_pred HHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceeecCEEEEecCCCCcc
Confidence 6788999999998876655543 333356665555677777765555555554
No 418
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=75.74 E-value=10 Score=30.42 Aligned_cols=91 Identities=10% Similarity=-0.059 Sum_probs=54.1
Q ss_pred CCeEEEE---ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--CCCCCccEEEEcCCC
Q psy8015 27 RLDCLAL---TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--GDNGPYDAIHVGAAY 99 (165)
Q Consensus 27 ~~~vLei---~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--~~~~~fD~I~i~~~~ 99 (165)
+++||=. .+.|..+..+|+. ..+|+++..+++..+.++ .+|.+.+--...+....+ .....+|.++-....
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~--~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~~~ 226 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVL--ELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTHT 226 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHH--HcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcCCc
Confidence 7787655 3566677777774 348999988887766663 345433211011110000 112469988753333
Q ss_pred CCchHHHHhccccCcEEEEE
Q psy8015 100 PRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi~ 119 (165)
....+..++.|+++|+++..
T Consensus 227 ~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 227 DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred HHHHHHHHHHhccCCEEEEE
Confidence 44556778999999999865
No 419
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=75.72 E-value=15 Score=29.97 Aligned_cols=92 Identities=9% Similarity=-0.124 Sum_probs=52.6
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEcc---CCC---CCCCCCCccEE
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD---GRA---SFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD---~~~---~~~~~~~fD~I 93 (165)
..++++||=. .+.|..+..+|+..+ .+++++.+++..+.++ ++|.+. ++..+ ... .+.....+|++
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~--~~g~~~--v~~~~~~~~~~~~~~~~~~~~vdvv 247 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR--KFGADV--VLNPPEVDVVEKIKELTGGYGCDIY 247 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHH--HcCCcE--EecCCCcCHHHHHHHHhCCCCCCEE
Confidence 3677877555 344555566666554 5889999887776553 334422 12111 100 11122358988
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+-............+.|+++|+++..
T Consensus 248 ld~~g~~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 248 IEATGHPSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred EECCCChHHHHHHHHHhhcCCEEEEE
Confidence 75433233345568999999998875
No 420
>PLN02494 adenosylhomocysteinase
Probab=75.61 E-value=11 Score=33.07 Aligned_cols=83 Identities=5% Similarity=-0.143 Sum_probs=52.6
Q ss_pred CCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015 26 KRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR 101 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~ 101 (165)
.|++|+=+ |.|..+..+++. ..+|+.+|.++.....|... |.. +. +..+.+ ...|+++......+
T Consensus 253 aGKtVvVi-GyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~--G~~---vv--~leEal---~~ADVVI~tTGt~~ 321 (477)
T PLN02494 253 AGKVAVIC-GYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME--GYQ---VL--TLEDVV---SEADIFVTTTGNKD 321 (477)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc--CCe---ec--cHHHHH---hhCCEEEECCCCcc
Confidence 57777765 667777655553 24899999998755444321 221 11 111111 35799988766666
Q ss_pred c-hHHHHhccccCcEEEEE
Q psy8015 102 Y-PEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 102 ~-p~~l~~~LkpgG~lvi~ 119 (165)
+ -...++.+|+|++++-.
T Consensus 322 vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 322 IIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred chHHHHHhcCCCCCEEEEc
Confidence 5 46778999999997764
No 421
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=75.55 E-value=13 Score=31.43 Aligned_cols=92 Identities=8% Similarity=-0.059 Sum_probs=48.6
Q ss_pred CCCeEEEEccccHHHHHHhc---c-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC--
Q psy8015 26 KRLDCLALTSNTKQSTTLPT---F-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY-- 99 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~---~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~-- 99 (165)
++.+|+=+ |.|..+...++ . ..+|+.+|.+++..+.+.. ..+. .+.....+..........+|+|+.....
T Consensus 166 ~~~~VlVi-GaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~-~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g 242 (370)
T TIGR00518 166 EPGDVTII-GGGVVGTNAAKMANGLGATVTILDINIDRLRQLDA-EFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLIPG 242 (370)
T ss_pred CCceEEEE-cCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-hcCc-eeEeccCCHHHHHHHHccCCEEEEccccCC
Confidence 34567655 55544433333 2 3479999999887665421 1121 1221111110000112468999876422
Q ss_pred ---CC-chHHHHhccccCcEEEEEe
Q psy8015 100 ---PR-YPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 100 ---~~-~p~~l~~~LkpgG~lvi~~ 120 (165)
+. +.++..+.++||+.++-..
T Consensus 243 ~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 243 AKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 22 3467778899998766543
No 422
>KOG2793|consensus
Probab=75.09 E-value=18 Score=29.01 Aligned_cols=95 Identities=8% Similarity=0.019 Sum_probs=49.9
Q ss_pred CCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhc--c------cccCCCC-CeEEEE-ccCCCCCCCCCC-ccE
Q psy8015 26 KRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGP--L------SSTIDPD-HDYDLI-ADGRASFGDNGP-YDA 92 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A--~------~~~~~~~-nV~~~~-gD~~~~~~~~~~-fD~ 92 (165)
...+|||+ +|||..++.+|... ..|+-.|.-.-+.... + +...|.+ .|.... +++.....-... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 35679999 99998888888755 4666666544333322 1 1111211 122222 222111111233 899
Q ss_pred EEEcCCC--CCch----HHHHhccccCcEEEEEe
Q psy8015 93 IHVGAAY--PRYP----EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 93 I~i~~~~--~~~p----~~l~~~LkpgG~lvi~~ 120 (165)
|+..... ++.+ ..+...|..++.+++..
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 9886543 2333 34567777788555543
No 423
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=74.83 E-value=23 Score=27.81 Aligned_cols=93 Identities=14% Similarity=0.006 Sum_probs=49.1
Q ss_pred CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCCCCCCCCCccEEEEcCC
Q psy8015 24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~~~~~~~~fD~I~i~~~ 98 (165)
..++++||-. + +.|..++.+|+.. .+|++++.+ +..+.+ +.+|..++ .....+..........+|.++-...
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 217 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELV--RSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVG 217 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHH--HHcCCCEeecCCCCCcchhccCCCCCcEEEECCC
Confidence 3678999877 5 3566666677654 488888854 444444 23343211 0000010011122346898876433
Q ss_pred CC--CchHHHHhccccCcEEEEEe
Q psy8015 99 YP--RYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 99 ~~--~~p~~l~~~LkpgG~lvi~~ 120 (165)
.. .....+ ..|+++|+++..-
T Consensus 218 ~~~~~~~~~~-~~l~~~g~~i~~g 240 (319)
T cd08267 218 NSPFSLYRAS-LALKPGGRYVSVG 240 (319)
T ss_pred chHHHHHHhh-hccCCCCEEEEec
Confidence 21 112222 3499999988753
No 424
>KOG3924|consensus
Probab=74.72 E-value=9.8 Score=32.60 Aligned_cols=108 Identities=9% Similarity=-0.007 Sum_probs=77.6
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc---------cccCCC-CC-eEE
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL---------SSTIDP-DH-DYD 75 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~---------~~~~~~-~n-V~~ 75 (165)
+..+.+...+.+. +.+++...|+ .|.|-.....|..+ .+-+++|+.....+.|. .+-+|. .| ++.
T Consensus 177 ~~~ql~si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 177 QLEQLRSIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hHHHHHHHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 6778888999985 5899999999 99998887777655 56788998888888773 233454 23 788
Q ss_pred EEccCCCCCC--C-CCCccEEEEcCCCCC------chHHHHhccccCcEEEEE
Q psy8015 76 LIADGRASFG--D-NGPYDAIHVGAAYPR------YPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 76 ~~gD~~~~~~--~-~~~fD~I~i~~~~~~------~p~~l~~~LkpgG~lvi~ 119 (165)
++++....-. + ...-++||++...-. ++ +++..+++|=|++-+
T Consensus 256 i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISS 307 (419)
T ss_pred cccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEecc
Confidence 8888643110 0 246789999765432 23 778999999998764
No 425
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=74.56 E-value=16 Score=30.90 Aligned_cols=98 Identities=8% Similarity=-0.091 Sum_probs=61.2
Q ss_pred HHHHHHhcCCCCCeEEEE-cc-ccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEc----cCC---CCC
Q psy8015 16 KYVTYLSGHSKRLDCLAL-TS-NTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA----DGR---ASF 84 (165)
Q Consensus 16 ~~l~~l~~~~~~~~vLei-~G-sG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g----D~~---~~~ 84 (165)
..+..+. .++|++|.=+ +| -|-.+..-|+.. ++++++|++++-.+.|+ ++|.. +++.. |.. ..+
T Consensus 176 av~nta~-v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~--~fGAT--~~vn~~~~~~vv~~i~~~ 250 (366)
T COG1062 176 AVVNTAK-VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK--KFGAT--HFVNPKEVDDVVEAIVEL 250 (366)
T ss_pred Hhhhccc-CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH--hcCCc--eeecchhhhhHHHHHHHh
Confidence 3444443 4789999998 54 455555555554 69999999999999996 23332 12221 111 111
Q ss_pred CCCCCccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 85 GDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 85 ~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
. .+-.|..|-.....+..+..++.++++|..++.
T Consensus 251 T-~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 251 T-DGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred c-CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 1 125677766655555666667888889998875
No 426
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=74.41 E-value=10 Score=30.83 Aligned_cols=108 Identities=7% Similarity=-0.065 Sum_probs=60.3
Q ss_pred cCCchHHHHHHHHHHhc--C-CCCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEcc
Q psy8015 7 SGSVSGAVAKYVTYLSG--H-SKRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIAD 79 (165)
Q Consensus 7 ~~~~~~~~~~~l~~l~~--~-~~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD 79 (165)
.++++.+...+...+.. . -.+++|+=+ |.|..+..+++. ..+|+.++++++..+.+. ..+...+. ..+
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~Ii-G~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~--~~g~~~~~--~~~ 202 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVL-GFGRTGMTIARTFSALGARVFVGARSSADLARIT--EMGLIPFP--LNK 202 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEE-cChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HCCCeeec--HHH
Confidence 44455554444333321 1 246777655 777777666654 348999999987654432 22322111 111
Q ss_pred CCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCC
Q psy8015 80 GRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 80 ~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
..+. ...+|+|+......-+..+..+.++++ .+++.+...
T Consensus 203 l~~~---l~~aDiVint~P~~ii~~~~l~~~k~~-aliIDlas~ 242 (287)
T TIGR02853 203 LEEK---VAEIDIVINTIPALVLTADVLSKLPKH-AVIIDLASK 242 (287)
T ss_pred HHHH---hccCCEEEECCChHHhCHHHHhcCCCC-eEEEEeCcC
Confidence 1111 246899998765444556677888885 566666543
No 427
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=73.86 E-value=23 Score=28.16 Aligned_cols=86 Identities=6% Similarity=-0.096 Sum_probs=43.2
Q ss_pred ccccHHHHHHhc----cCCcEEEEeCCHHHHHhcccccCCCCCeEEE-EccCCCCCCCCCCccEEEEcCCCCCch---HH
Q psy8015 34 TSNTKQSTTLPT----FIPNSFNINVYYYLSGGPLSSTIDPDHDYDL-IADGRASFGDNGPYDAIHVGAAYPRYP---EI 105 (165)
Q Consensus 34 ~GsG~~t~~la~----~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~-~gD~~~~~~~~~~fD~I~i~~~~~~~p---~~ 105 (165)
.|+|.++..+|. ...+|+.++.+++.++..+.+....++-+.. .........+..++|.|++.-...... +.
T Consensus 6 iG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~~~~~~~~~~ 85 (304)
T PRK06522 6 LGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKAYQLPAALPS 85 (304)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEecccccHHHHHHH
Confidence 477766655554 3468999999877766553221111000000 000111111125799999976554443 34
Q ss_pred HHhccccCcEEEEE
Q psy8015 106 FIHHLKSGGRLVIP 119 (165)
Q Consensus 106 l~~~LkpgG~lvi~ 119 (165)
+...+.++..++..
T Consensus 86 l~~~l~~~~~iv~~ 99 (304)
T PRK06522 86 LAPLLGPDTPVLFL 99 (304)
T ss_pred HhhhcCCCCEEEEe
Confidence 44555555555543
No 428
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=73.46 E-value=35 Score=26.98 Aligned_cols=92 Identities=10% Similarity=-0.080 Sum_probs=53.6
Q ss_pred CCCCCeEEEEc---cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccEE
Q psy8015 24 HSKRLDCLALT---SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei~---GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~I 93 (165)
..++++||=.- +.|..+..+|+.. .+|++++.+++..+.++ .+|.+. ++...-. . .......+|.+
T Consensus 140 ~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~--~~g~~~--~~~~~~~~~~~~~~~~~~~~~~d~v 215 (324)
T cd08244 140 LTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVR--ALGADV--AVDYTRPDWPDQVREALGGGGVTVV 215 (324)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCCCE--EEecCCccHHHHHHHHcCCCCceEE
Confidence 35677765442 3445555555543 58999999888877663 334422 1211100 0 01122459988
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
+-....+. .+..++.|+++|+++..-
T Consensus 216 l~~~g~~~-~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 216 LDGVGGAI-GRAALALLAPGGRFLTYG 241 (324)
T ss_pred EECCChHh-HHHHHHHhccCcEEEEEe
Confidence 76544433 366789999999988754
No 429
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=73.03 E-value=15 Score=28.23 Aligned_cols=90 Identities=10% Similarity=-0.161 Sum_probs=57.3
Q ss_pred CCCeEEEEccccHHHHHHhc----cCCcEEEEe--CCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 26 KRLDCLALTSNTKQSTTLPT----FIPNSFNIN--VYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~----~~~~V~aiD--~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
.+++||=| |.|..+..-++ ...+|+-++ .++++.+.+. . .+++++.++.... ....+|.|++....
T Consensus 8 ~gk~vlVv-GgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~---~--~~i~~~~~~~~~~--dl~~~~lVi~at~d 79 (205)
T TIGR01470 8 EGRAVLVV-GGGDVALRKARLLLKAGAQLRVIAEELESELTLLAE---Q--GGITWLARCFDAD--ILEGAFLVIAATDD 79 (205)
T ss_pred CCCeEEEE-CcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHH---c--CCEEEEeCCCCHH--HhCCcEEEEECCCC
Confidence 46788766 77777654333 345676665 4455544332 1 2688888875432 23568999887766
Q ss_pred CCchHHHHhccccCcEEEEEecCC
Q psy8015 100 PRYPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
+.+-..+...-+.-|.+|-.++..
T Consensus 80 ~~ln~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 80 EELNRRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred HHHHHHHHHHHHHcCCEEEECCCc
Confidence 666667777777778888666543
No 430
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=72.93 E-value=3.3 Score=35.18 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=38.7
Q ss_pred CCCCeEEEEccCCCCCC--CCCCccEEEEcCCCCCchH--------HHHhccccCcEEEE
Q psy8015 69 DPDHDYDLIADGRASFG--DNGPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVI 118 (165)
Q Consensus 69 ~~~nV~~~~gD~~~~~~--~~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi 118 (165)
++++|+++.++..+-+. +.++||.+++......+++ ++.+.++||||++.
T Consensus 273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 46789999999765332 3579999999877666553 57899999999887
No 431
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.91 E-value=0.57 Score=35.13 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=29.4
Q ss_pred CCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEecCCC
Q psy8015 84 FGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 84 ~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~~~~ 124 (165)
...+.+.|+|+..-..+++- ..|++.|||||.|-+.+++-.
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 34456778887765554432 368999999999999987643
No 432
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=72.79 E-value=13 Score=30.91 Aligned_cols=92 Identities=8% Similarity=-0.095 Sum_probs=51.2
Q ss_pred CCCCCeEEEEccccHHH---HHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEcc--CCC---CCCCCCCccE
Q psy8015 24 HSKRLDCLALTSNTKQS---TTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIAD--GRA---SFGDNGPYDA 92 (165)
Q Consensus 24 ~~~~~~vLei~GsG~~t---~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD--~~~---~~~~~~~fD~ 92 (165)
..++++||=. |.|.++ +.+++..+ +|+.++.+++..+.++ .+|.+++ .....+ ... .+.. +.+|.
T Consensus 188 ~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~--~lGa~~~i~~~~~~~~~~~~v~~~~~-~~~d~ 263 (373)
T cd08299 188 VTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAK--ELGATECINPQDYKKPIQEVLTEMTD-GGVDF 263 (373)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HcCCceEecccccchhHHHHHHHHhC-CCCeE
Confidence 3678888777 444444 44555443 7999999998888773 3454321 111111 100 1112 35897
Q ss_pred EEEcCCCCC-chHHHHhccccCcEEEEE
Q psy8015 93 IHVGAAYPR-YPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 93 I~i~~~~~~-~p~~l~~~LkpgG~lvi~ 119 (165)
++=..+.+. +.+.+...++++|+++..
T Consensus 264 vld~~g~~~~~~~~~~~~~~~~G~~v~~ 291 (373)
T cd08299 264 SFEVIGRLDTMKAALASCHEGYGVSVIV 291 (373)
T ss_pred EEECCCCcHHHHHHHHhhccCCCEEEEE
Confidence 765444333 334454455689998875
No 433
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.71 E-value=28 Score=28.13 Aligned_cols=93 Identities=11% Similarity=-0.022 Sum_probs=53.2
Q ss_pred cCCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccE
Q psy8015 23 GHSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDA 92 (165)
Q Consensus 23 ~~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~ 92 (165)
...++++||=. .+.|..+..+|+..+ .|++++.+++-.+.++ .+|.+ .++...-. + .......+|.
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~--~~ga~--~v~~~~~~~~~~~i~~~~~~~~~d~ 240 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAR--EFGAT--DIVAERGEEAVARVRELTGGVGADA 240 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HcCCc--eEecCCcccHHHHHHHhcCCCCCCE
Confidence 34567777666 334455555665544 4899998886666553 23432 11111100 0 0112245898
Q ss_pred EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 93 IHVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 93 I~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
++-..+.....+...+.|+++|+++..
T Consensus 241 il~~~g~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 241 VLECVGTQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred EEECCCCHHHHHHHHHhhccCCEEEEe
Confidence 886544334455678999999998864
No 434
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=72.53 E-value=17 Score=28.47 Aligned_cols=93 Identities=15% Similarity=0.034 Sum_probs=53.1
Q ss_pred CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i 95 (165)
..++++||-. + +.|..++.+++.. .+|+.++.+++..+.++ ..+..++ .....+..+ .......+|.++-
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~ 214 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR--ALGADHVIDYRDPDLRERVKALTGGRGVDVVYD 214 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH--HcCCceeeecCCccHHHHHHHHcCCCCcEEEEE
Confidence 3578888866 5 3455555555543 47999999988777664 2343221 101111100 0112245898876
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
..+. ...+..++.++++|+++..
T Consensus 215 ~~g~-~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 215 PVGG-DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CccH-HHHHHHHHhhccCCEEEEE
Confidence 4433 3445667899999998763
No 435
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=71.38 E-value=23 Score=26.42 Aligned_cols=86 Identities=15% Similarity=0.004 Sum_probs=49.9
Q ss_pred HHHHHHhccCC---cEE--EEeCCHHHHHhcc-----cccCCCCCeEEEE-ccCCCCC--C--CCCCccEEEEcCCCCC-
Q psy8015 38 KQSTTLPTFIP---NSF--NINVYYYLSGGPL-----SSTIDPDHDYDLI-ADGRASF--G--DNGPYDAIHVGAAYPR- 101 (165)
Q Consensus 38 ~~t~~la~~~~---~V~--aiD~~~~~~~~A~-----~~~~~~~nV~~~~-gD~~~~~--~--~~~~fD~I~i~~~~~~- 101 (165)
.++..|++..+ .++ +.|-.+++.+.-. ++.+...++++.. -|+...- . ...+||+|+.+..-.-
T Consensus 9 SFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~ 88 (166)
T PF10354_consen 9 SFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNFPHVGG 88 (166)
T ss_pred HHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeCCCCCC
Confidence 56677776543 554 4566666665431 3333333455444 4665422 2 3478999999633211
Q ss_pred --------ch----------HHHHhccccCcEEEEEecCC
Q psy8015 102 --------YP----------EIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 102 --------~p----------~~l~~~LkpgG~lvi~~~~~ 123 (165)
+. ..+.+.|+++|.+.+.+-+.
T Consensus 89 ~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 89 GSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 10 13568999999999988653
No 436
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=71.16 E-value=22 Score=29.43 Aligned_cols=92 Identities=10% Similarity=-0.064 Sum_probs=53.2
Q ss_pred CCCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---CCCCCCCCccEEEEc
Q psy8015 24 HSKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---ASFGDNGPYDAIHVG 96 (165)
Q Consensus 24 ~~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~~~~~~~~fD~I~i~ 96 (165)
..++++||=. +| .|..+..+++..+ +|+++|.+++-.+.++ ++|..-+.....+.. ..... ..+|.++-.
T Consensus 174 ~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~--~~g~~~v~~~~~~~~~~i~~~~~-~~~d~v~d~ 250 (375)
T cd08282 174 VQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAE--SIGAIPIDFSDGDPVEQILGLEP-GGVDRAVDC 250 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HcCCeEeccCcccHHHHHHHhhC-CCCCEEEEC
Confidence 3678888777 43 4556666666554 6999999988877764 234311111011100 01112 358988765
Q ss_pred CCCCC-----------chHHHHhccccCcEEEE
Q psy8015 97 AAYPR-----------YPEIFIHHLKSGGRLVI 118 (165)
Q Consensus 97 ~~~~~-----------~p~~l~~~LkpgG~lvi 118 (165)
...+. -.....+.|+++|+++.
T Consensus 251 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 251 VGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred CCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 44331 13456789999999854
No 437
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.86 E-value=29 Score=29.46 Aligned_cols=83 Identities=7% Similarity=-0.067 Sum_probs=52.7
Q ss_pred ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CC--CCCCccEEEEcCCCCCchH-
Q psy8015 34 TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FG--DNGPYDAIHVGAAYPRYPE- 104 (165)
Q Consensus 34 ~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~--~~~~fD~I~i~~~~~~~p~- 104 (165)
||.|.++..+++. ..+|+.+|.+++.++.++. . .+++++.||+.+. +. ....+|.+++.........
T Consensus 6 iG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~-~---~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n~~ 81 (453)
T PRK09496 6 VGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQD-R---LDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETNMV 81 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh-h---cCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHHHH
Confidence 7999999888874 3589999999998776542 1 2478889998641 11 1357898888654433222
Q ss_pred --HHHhccccCcEEEEEe
Q psy8015 105 --IFIHHLKSGGRLVIPI 120 (165)
Q Consensus 105 --~l~~~LkpgG~lvi~~ 120 (165)
...+.+.|.-.+++-+
T Consensus 82 ~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 82 ACQIAKSLFGAPTTIARV 99 (453)
T ss_pred HHHHHHHhcCCCeEEEEE
Confidence 2234444555555544
No 438
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=70.76 E-value=16 Score=29.05 Aligned_cols=91 Identities=4% Similarity=-0.076 Sum_probs=50.8
Q ss_pred CCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEcc---CCCCCCCCCCccEEEEcCC
Q psy8015 26 KRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIAD---GRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 26 ~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD---~~~~~~~~~~fD~I~i~~~ 98 (165)
++++||=. + +.|..+..+|+.. .+|++++.+++-.+.++ .+|.+.+--...+ ....+. ...+|.++-...
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~v~~~~~~~~~~~~~~~-~~~~d~vld~~g 222 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLK--KLGAKEVIPREELQEESIKPLE-KQRWAGAVDPVG 222 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHH--HcCCCEEEcchhHHHHHHHhhc-cCCcCEEEECCc
Confidence 35677655 3 2344444455543 48999999988777663 3444221111111 001111 245898764433
Q ss_pred CCCchHHHHhccccCcEEEEEe
Q psy8015 99 YPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 99 ~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
. ...+..++.|+++|+++..-
T Consensus 223 ~-~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 223 G-KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred H-HHHHHHHHHhhcCCEEEEEe
Confidence 3 44556789999999988753
No 439
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=70.51 E-value=10 Score=33.24 Aligned_cols=83 Identities=2% Similarity=-0.195 Sum_probs=52.4
Q ss_pred CCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015 26 KRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR 101 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~ 101 (165)
.|++|+=+ |.|..+..+|+. ..+|+.+|.++.....|.. .|. ++. +..+. ....|+|++.....+
T Consensus 253 aGKtVgVI-G~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~--~G~---~~~--~leel---l~~ADIVI~atGt~~ 321 (476)
T PTZ00075 253 AGKTVVVC-GYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM--EGY---QVV--TLEDV---VETADIFVTATGNKD 321 (476)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh--cCc---eec--cHHHH---HhcCCEEEECCCccc
Confidence 57777766 666677666654 2489999999876544432 132 221 11111 135899998765555
Q ss_pred c-hHHHHhccccCcEEEEE
Q psy8015 102 Y-PEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 102 ~-p~~l~~~LkpgG~lvi~ 119 (165)
+ ..+.++.+|||++++-.
T Consensus 322 iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 322 IITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ccCHHHHhccCCCcEEEEc
Confidence 4 45788999999987664
No 440
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=69.99 E-value=11 Score=25.34 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=11.8
Q ss_pred eEEEEccccHHHHHHh
Q psy8015 29 DCLALTSNTKQSTTLP 44 (165)
Q Consensus 29 ~vLei~GsG~~t~~la 44 (165)
++|=+||+|..|..++
T Consensus 4 kILvvCgsG~~TS~m~ 19 (94)
T PRK10310 4 KIIVACGGAVATSTMA 19 (94)
T ss_pred eEEEECCCchhHHHHH
Confidence 5665599999777663
No 441
>KOG2920|consensus
Probab=69.95 E-value=5.6 Score=32.46 Aligned_cols=38 Identities=5% Similarity=-0.278 Sum_probs=31.3
Q ss_pred CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHh
Q psy8015 25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGG 62 (165)
Q Consensus 25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~ 62 (165)
..+++|||+ ||+|--........ ..|+..|.+.+.++.
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~ 154 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRL 154 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheee
Confidence 579999999 99998887666554 689999999988853
No 442
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=69.87 E-value=10 Score=26.63 Aligned_cols=44 Identities=14% Similarity=-0.002 Sum_probs=32.0
Q ss_pred HHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCH
Q psy8015 14 VAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYY 57 (165)
Q Consensus 14 ~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~ 57 (165)
.+.++++-... .+...+.|| ||.|-+.-.|...+.+=+++|...
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 45555555432 246689999 999999999988877777888643
No 443
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=69.73 E-value=18 Score=31.07 Aligned_cols=93 Identities=10% Similarity=-0.024 Sum_probs=54.3
Q ss_pred CCCCeEEEE--ccccHH--HHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 25 SKRLDCLAL--TSNTKQ--STTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 25 ~~~~~vLei--~GsG~~--t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
.++++|+=+ +|||-. +..|.+...+|++.|.++.- ...++++. ++++..+.....+ ..+|+|+.+.+.+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~-~~~~l~~~---gi~~~~~~~~~~~---~~~d~vv~spgi~ 77 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA-VTQRLLEL---GAIIFIGHDAENI---KDADVVVYSSAIP 77 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh-HHHHHHHC---CCEEeCCCCHHHC---CCCCEEEECCCCC
Confidence 456788888 778876 44566667799999986542 11224333 3555543322222 3699999998775
Q ss_pred C-chH---------------HHHhccccCcEEEEEecCCC
Q psy8015 101 R-YPE---------------IFIHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 101 ~-~p~---------------~l~~~LkpgG~lvi~~~~~~ 124 (165)
. -|. ++...+.+...++.+.|+.+
T Consensus 78 ~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnG 117 (461)
T PRK00421 78 DDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHG 117 (461)
T ss_pred CCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCC
Confidence 2 221 23333333346777777654
No 444
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=69.69 E-value=47 Score=26.12 Aligned_cols=90 Identities=9% Similarity=-0.058 Sum_probs=58.5
Q ss_pred CCCeEEEEccccHHHHH----HhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 26 KRLDCLALTSNTKQSTT----LPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~----la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
++.+||=| |.|..+.. |.+... .|++-++++++.+.++ ..+++++..+..... ...++.|++....
T Consensus 24 ~~~~VLVV-GGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~-----~~~i~~~~r~~~~~d--l~g~~LViaATdD 95 (223)
T PRK05562 24 NKIKVLII-GGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK-----YGNLKLIKGNYDKEF--IKDKHLIVIATDD 95 (223)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh-----CCCEEEEeCCCChHH--hCCCcEEEECCCC
Confidence 57788888 66766643 222233 4666799999887653 235788876643322 2458888887776
Q ss_pred CCchHHHHhccccCcEEEEEecCC
Q psy8015 100 PRYPEIFIHHLKSGGRLVIPIGDT 123 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi~~~~~ 123 (165)
+.+-+.+.+.-+.-|.++..+.+.
T Consensus 96 ~~vN~~I~~~a~~~~~lvn~vd~p 119 (223)
T PRK05562 96 EKLNNKIRKHCDRLYKLYIDCSDY 119 (223)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCCc
Confidence 677777777666767777766543
No 445
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=69.61 E-value=22 Score=27.62 Aligned_cols=94 Identities=14% Similarity=-0.002 Sum_probs=51.8
Q ss_pred cCCCCCeEEEEcccc---HHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEE
Q psy8015 23 GHSKRLDCLALTSNT---KQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIH 94 (165)
Q Consensus 23 ~~~~~~~vLei~GsG---~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~ 94 (165)
...++++||=..|+| ..+..+++.. .+|++++.+++..+.++ .+|.+.+ .....+... ...+...+|.++
T Consensus 117 ~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 194 (303)
T cd08251 117 GLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLK--QLGVPHVINYVEEDFEEEIMRLTGGRGVDVVI 194 (303)
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH--HcCCCEEEeCCCccHHHHHHHHcCCCCceEEE
Confidence 346777776334444 4445455543 47999998887776663 3454321 111111100 111224689776
Q ss_pred EcCCCCCchHHHHhccccCcEEEEE
Q psy8015 95 VGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 95 i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
-.. ........++.|+++|+++..
T Consensus 195 ~~~-~~~~~~~~~~~l~~~g~~v~~ 218 (303)
T cd08251 195 NTL-SGEAIQKGLNCLAPGGRYVEI 218 (303)
T ss_pred ECC-cHHHHHHHHHHhccCcEEEEE
Confidence 433 333444567999999998864
No 446
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=69.41 E-value=41 Score=26.64 Aligned_cols=91 Identities=11% Similarity=-0.031 Sum_probs=51.3
Q ss_pred CCCCCeEEEEcc---ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccEE
Q psy8015 24 HSKRLDCLALTS---NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei~G---sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~I 93 (165)
..++++||=..+ .|..++.+|+.. .+|+.+..+++-.+.++ ..|.+. ++..+-.. .......+|.+
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~--~~g~~~--~~~~~~~~~~~~i~~~~~~~~~d~v 212 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELR--ALGIGP--VVSTEQPGWQDKVREAAGGAPISVA 212 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHH--hcCCCE--EEcCCCchHHHHHHHHhCCCCCcEE
Confidence 367888776523 556666666654 46777766665555443 234421 22111100 11122469988
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
+-.... ......++.|+++|+++..
T Consensus 213 ~d~~g~-~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 213 LDSVGG-KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred EECCCC-hhHHHHHHhhcCCcEEEEE
Confidence 855443 3446678999999998765
No 447
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=68.98 E-value=39 Score=27.58 Aligned_cols=88 Identities=10% Similarity=0.061 Sum_probs=51.3
Q ss_pred CCCeEEEEccccHHHHHHhcc-----CCcEEEEeCCHHHH-HhcccccCCCCCeEEEEc-cCCCCCCCCCCccEEEEcCC
Q psy8015 26 KRLDCLALTSNTKQSTTLPTF-----IPNSFNINVYYYLS-GGPLSSTIDPDHDYDLIA-DGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~~-----~~~V~aiD~~~~~~-~~A~~~~~~~~nV~~~~g-D~~~~~~~~~~fD~I~i~~~ 98 (165)
++++|+=+ |+|.++..+++. ..+|+.++++++.. +.|+ .+|. ..+.. |..+. ...+|+|+...+
T Consensus 177 ~~~~V~Vi-GaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~--~~g~---~~~~~~~~~~~---l~~aDvVi~at~ 247 (311)
T cd05213 177 KGKKVLVI-GAGEMGELAAKHLAAKGVAEITIANRTYERAEELAK--ELGG---NAVPLDELLEL---LNEADVVISATG 247 (311)
T ss_pred cCCEEEEE-CcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH--HcCC---eEEeHHHHHHH---HhcCCEEEECCC
Confidence 68888888 667777655543 25799999998754 4443 2232 22221 21111 235899999877
Q ss_pred CCCchH---HHHhccccCcEEEEEecC
Q psy8015 99 YPRYPE---IFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 99 ~~~~p~---~l~~~LkpgG~lvi~~~~ 122 (165)
.++..+ ...+..+.++++++-+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 248 APHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred CCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 666522 222333335788887764
No 448
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=68.95 E-value=36 Score=26.94 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=51.8
Q ss_pred CCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCCC---CCCCCCCccEEEEc
Q psy8015 25 SKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGRA---SFGDNGPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~~---~~~~~~~fD~I~i~ 96 (165)
.++++||=. + +.|..+..+|+.. .+|+.+..+++-.+.++ ++|.+.+--... +... .......+|.|+-.
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~ 214 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELK--ALGADEVIDSSPEDLAQRVKEATGGAGARLALDA 214 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHH--hcCCCEEecccchhHHHHHHHHhcCCCceEEEEC
Confidence 577888755 3 3555556666654 47888887777666553 345422111111 1000 11122468988764
Q ss_pred CCCCCchHHHHhccccCcEEEEE
Q psy8015 97 AAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 97 ~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
..... ....++.|+++|+++..
T Consensus 215 ~g~~~-~~~~~~~l~~~g~~v~~ 236 (323)
T cd05282 215 VGGES-ATRLARSLRPGGTLVNY 236 (323)
T ss_pred CCCHH-HHHHHHhhCCCCEEEEE
Confidence 44333 34556899999998864
No 449
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=68.87 E-value=20 Score=28.74 Aligned_cols=91 Identities=10% Similarity=-0.036 Sum_probs=52.3
Q ss_pred CCeEEEE-c--cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC-C-CCCCCCccEEEEcCCC
Q psy8015 27 RLDCLAL-T--SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA-S-FGDNGPYDAIHVGAAY 99 (165)
Q Consensus 27 ~~~vLei-~--GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~-~-~~~~~~fD~I~i~~~~ 99 (165)
+++||=. . +.|..+..+|+..+ +|++++.+++..+.++ ++|.+.+--...+... . ......+|.++-....
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~ 227 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVK--ELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDT 227 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHH--hcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCc
Confidence 7777755 3 34445555665544 8999999888777763 3444221000011100 0 0112468988754443
Q ss_pred CCchHHHHhccccCcEEEEE
Q psy8015 100 PRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi~ 119 (165)
....+..++.|+++|+++..
T Consensus 228 ~~~~~~~~~~l~~~g~~v~~ 247 (336)
T cd08252 228 DQHWDAMAELIAPQGHICLI 247 (336)
T ss_pred HHHHHHHHHHhcCCCEEEEe
Confidence 44556678999999998875
No 450
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=67.82 E-value=12 Score=30.16 Aligned_cols=50 Identities=6% Similarity=-0.116 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-------CcEEEEeCCHHHH
Q psy8015 10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-------PNSFNINVYYYLS 60 (165)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-------~~V~aiD~~~~~~ 60 (165)
|++.++.|.+.=. +.+...++|. ||.|.++.+++... .+++.||......
T Consensus 3 qsSli~~l~~~~l-l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 3 QSSLIGNLEQRGL-LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred HHHHHHHHHHcCC-CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 3444444444432 3678899999 99999999999875 3689999855443
No 451
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=67.78 E-value=33 Score=27.88 Aligned_cols=91 Identities=9% Similarity=-0.061 Sum_probs=46.6
Q ss_pred CeEEEE-ccc--cHHHHHHhccCCcEEEEeCCHHHHHhcccccCCC-----CCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015 28 LDCLAL-TSN--TKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDP-----DHDYDLIADGRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 28 ~~vLei-~Gs--G~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~-----~nV~~~~gD~~~~~~~~~~fD~I~i~~~~ 99 (165)
.+|+=+ +|. |+++..|++....|+.++.+++.++.-+.+ .|+ .+-....-.... ..+.++||.|++.--.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~-~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~vK~ 80 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA-GGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLACKA 80 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc-CCeEEeeCCcceeeccCCCC-cccccccCEEEEECCH
Confidence 355555 332 356666666667899999987655533211 111 111111111111 1123589999996544
Q ss_pred CCch---HHHHhccccCcEEEEEe
Q psy8015 100 PRYP---EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 100 ~~~p---~~l~~~LkpgG~lvi~~ 120 (165)
.... +.+...+.++..++...
T Consensus 81 ~~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 81 YDAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred HhHHHHHHHHHhhCCCCCEEEEEe
Confidence 3333 34566677777655543
No 452
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=67.05 E-value=7.1 Score=33.41 Aligned_cols=30 Identities=0% Similarity=-0.174 Sum_probs=23.6
Q ss_pred ccccHHHHHHhcc----CCcEEEEeCCHHHHHhc
Q psy8015 34 TSNTKQSTTLPTF----IPNSFNINVYYYLSGGP 63 (165)
Q Consensus 34 ~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A 63 (165)
-|.||++..+|.. ..+|+++|++++.++..
T Consensus 9 IGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 9 IGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTI 42 (415)
T ss_pred ECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 5888887666653 46899999999988864
No 453
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=66.91 E-value=38 Score=26.86 Aligned_cols=93 Identities=10% Similarity=-0.005 Sum_probs=53.7
Q ss_pred CCCCCeEEEE--ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEc--cCC---CCCCCCCCccEEEE
Q psy8015 24 HSKRLDCLAL--TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA--DGR---ASFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei--~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g--D~~---~~~~~~~~fD~I~i 95 (165)
..++++|+=. .+.|..+..+++.. .+|+.++.+++-.+.++. ++.+++--... +.. ........+|.++-
T Consensus 158 ~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 235 (336)
T cd08276 158 LKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKA--LGADHVINYRTTPDWGEEVLKLTGGRGVDHVVE 235 (336)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH--cCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEE
Confidence 3677887755 34555556666654 479999998887776642 24332211111 100 01122246898875
Q ss_pred cCCCCCchHHHHhccccCcEEEEE
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
... .......++.|+++|+++..
T Consensus 236 ~~~-~~~~~~~~~~l~~~G~~v~~ 258 (336)
T cd08276 236 VGG-PGTLAQSIKAVAPGGVISLI 258 (336)
T ss_pred CCC-hHHHHHHHHhhcCCCEEEEE
Confidence 433 33445667999999998764
No 454
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=66.78 E-value=16 Score=29.62 Aligned_cols=90 Identities=10% Similarity=0.061 Sum_probs=59.7
Q ss_pred ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcc-------------cccCCCCCeEEEEccCC---C----CCCC-CC
Q psy8015 34 TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPL-------------SSTIDPDHDYDLIADGR---A----SFGD-NG 88 (165)
Q Consensus 34 ~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~-------------~~~~~~~nV~~~~gD~~---~----~~~~-~~ 88 (165)
.|-|-+...+.+. ...|++.|++++.++.+. .++++.+.+.++--.+- + .+.+ ..
T Consensus 6 iGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~ 85 (300)
T COG1023 6 IGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLS 85 (300)
T ss_pred eccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcC
Confidence 4778787777764 368999999999998763 22344455555543322 1 1111 22
Q ss_pred CccEEEEcCCCCCchHHH--HhccccCcEEEEEecCCC
Q psy8015 89 PYDAIHVGAAYPRYPEIF--IHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 89 ~fD~I~i~~~~~~~p~~l--~~~LkpgG~lvi~~~~~~ 124 (165)
.=| |++++.-.++.+.+ .++|++.|+=++-+++++
T Consensus 86 ~GD-ivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 86 AGD-IVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred CCC-EEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 335 66788877887755 457999999999999875
No 455
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=66.70 E-value=25 Score=28.55 Aligned_cols=90 Identities=9% Similarity=-0.052 Sum_probs=45.5
Q ss_pred CCeEEEEccccHHH----HHHhccCCcEEEEeCCHHHHHhcc-----cccCCCCCeEEEEccCCCCCCCCCCccEEEEcC
Q psy8015 27 RLDCLALTSNTKQS----TTLPTFIPNSFNINVYYYLSGGPL-----SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGA 97 (165)
Q Consensus 27 ~~~vLei~GsG~~t----~~la~~~~~V~aiD~~~~~~~~A~-----~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~ 97 (165)
..+|+=+ |.|.++ ..|++....|+-+..++. +..+ +... ..+..+....+.......++||.|++.-
T Consensus 5 ~m~I~Ii-G~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~vilav 80 (313)
T PRK06249 5 TPRIGII-GTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSV-HGDFHLPPVQAYRSAEDMPPCDWVLVGL 80 (313)
T ss_pred CcEEEEE-CCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeC-CCCeeecCceEEcchhhcCCCCEEEEEe
Confidence 3566656 656554 444454567888887652 2111 1110 0111111111111112235799999975
Q ss_pred CCCCc---hHHHHhccccCcEEEEEe
Q psy8015 98 AYPRY---PEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 98 ~~~~~---p~~l~~~LkpgG~lvi~~ 120 (165)
-.... .+.+...+++++.++...
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEec
Confidence 44433 345667788888766543
No 456
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=66.38 E-value=34 Score=27.30 Aligned_cols=92 Identities=5% Similarity=-0.151 Sum_probs=52.1
Q ss_pred CCCCCeEEEEc---cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccEE
Q psy8015 24 HSKRLDCLALT---SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDAI 93 (165)
Q Consensus 24 ~~~~~~vLei~---GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~I 93 (165)
..++++|+=.- +.|..+..+++.. .+|++++.+++-.+.++ .+|.+. ++..+... .......+|++
T Consensus 138 ~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~--~~g~~~--~~~~~~~~~~~~~~~~~~~~~~d~v 213 (327)
T PRK10754 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAK--KAGAWQ--VINYREENIVERVKEITGGKKVRVV 213 (327)
T ss_pred CCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HCCCCE--EEcCCCCcHHHHHHHHcCCCCeEEE
Confidence 35677776433 3445555566554 47999998888776663 345422 22211110 11122458977
Q ss_pred EEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015 94 HVGAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 94 ~i~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
+-... .......++.|+++|+++..-
T Consensus 214 l~~~~-~~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 214 YDSVG-KDTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred EECCc-HHHHHHHHHHhccCCEEEEEc
Confidence 64322 233445678999999998753
No 457
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=66.35 E-value=13 Score=30.08 Aligned_cols=90 Identities=14% Similarity=0.020 Sum_probs=46.1
Q ss_pred CCCeEEEEcccc---HHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015 26 KRLDCLALTSNT---KQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRASFGDNGPYDAIHVGAAYP 100 (165)
Q Consensus 26 ~~~~vLei~GsG---~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~~~~~~~~fD~I~i~~~~~ 100 (165)
++++||=..++| ..+..+|+.. -+|+++..+ +-.+.+ +.+|.+.+ .....+....+.....+|.++-.....
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~--~~~g~~~~~~~~~~~~~~~l~~~~~vd~vi~~~g~~ 238 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLV--KSLGADDVIDYNNEDFEEELTERGKFDVILDTVGGD 238 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHH--HHhCCceEEECCChhHHHHHHhcCCCCEEEECCChH
Confidence 378887553334 4444455443 367777644 323322 23343211 110001111111124689988654444
Q ss_pred CchHHHHhccccCcEEEEE
Q psy8015 101 RYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 101 ~~p~~l~~~LkpgG~lvi~ 119 (165)
..+..++.|+++|+++..
T Consensus 239 -~~~~~~~~l~~~G~~v~~ 256 (350)
T cd08248 239 -TEKWALKLLKKGGTYVTL 256 (350)
T ss_pred -HHHHHHHHhccCCEEEEe
Confidence 455678999999999875
No 458
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=66.31 E-value=57 Score=25.86 Aligned_cols=93 Identities=6% Similarity=-0.134 Sum_probs=53.3
Q ss_pred CCCCCeEEEE-c--cccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeE-EEEcc-CCC---CCCCCCCccEEE
Q psy8015 24 HSKRLDCLAL-T--SNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDY-DLIAD-GRA---SFGDNGPYDAIH 94 (165)
Q Consensus 24 ~~~~~~vLei-~--GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~gD-~~~---~~~~~~~fD~I~ 94 (165)
..++++||=. + +.|..+..+|+..+ +++.+..+++..+.++ ++|.+.+- ....| ... .......+|.++
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 215 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCK--KLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVL 215 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCcEEEecCChhHHHHHHHHHhCCCCceEEE
Confidence 3577887754 2 35555666666544 6777888888877773 34542111 11111 100 011234689888
Q ss_pred EcCCCCCchHHHHhccccCcEEEEE
Q psy8015 95 VGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 95 i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
-... ........+.|+++|+++..
T Consensus 216 ~~~~-~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 216 DCVG-GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred ECCc-hHHHHHHHHHhccCCeEEEE
Confidence 6443 34445667899999998863
No 459
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=65.85 E-value=32 Score=27.27 Aligned_cols=92 Identities=15% Similarity=0.031 Sum_probs=51.0
Q ss_pred CCCCCeEEEEc---cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC-CCCCCCCCccEEEEcCC
Q psy8015 24 HSKRLDCLALT---SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR-ASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 24 ~~~~~~vLei~---GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~-~~~~~~~~fD~I~i~~~ 98 (165)
..+++++|=.- +.|..++.+++.. .+|+++..+++..+.++ ..+... ++..+.. +.+.....+|.++-..+
T Consensus 160 ~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~d~v~~~~g 235 (332)
T cd08259 160 VKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILK--ELGADY--VIDGSKFSEDVKKLGGADVVIELVG 235 (332)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH--HcCCcE--EEecHHHHHHHHhccCCCEEEECCC
Confidence 46677777653 3344444444443 48899888887666552 233321 1211100 11111125898876544
Q ss_pred CCCchHHHHhccccCcEEEEEe
Q psy8015 99 YPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 99 ~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
... ...+.+.++++|+++..-
T Consensus 236 ~~~-~~~~~~~~~~~g~~v~~g 256 (332)
T cd08259 236 SPT-IEESLRSLNKGGRLVLIG 256 (332)
T ss_pred hHH-HHHHHHHhhcCCEEEEEc
Confidence 333 456778999999988653
No 460
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=65.67 E-value=16 Score=29.24 Aligned_cols=92 Identities=9% Similarity=0.028 Sum_probs=50.4
Q ss_pred CCCCeEEEEcccc---HHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCC---CCCCCCCCccEEEEc
Q psy8015 25 SKRLDCLALTSNT---KQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGR---ASFGDNGPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei~GsG---~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~---~~~~~~~~fD~I~i~ 96 (165)
.++++||=.-++| ..+..+++.. .+|++++.+++..+.++ +.+|.+.+--... +.. ..... +.+|.++-.
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~v~~~~~-~~~d~vi~~ 221 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLV-EELGFDAAINYKTPDLAEALKEAAP-DGIDVYFDN 221 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hhcCCceEEecCChhHHHHHHHhcc-CCceEEEEc
Confidence 5677777443344 4444555543 48999998887766553 1134322111111 110 01111 468987754
Q ss_pred CCCCCchHHHHhccccCcEEEEE
Q psy8015 97 AAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 97 ~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
.+ .......++.|+++|+++..
T Consensus 222 ~g-~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 222 VG-GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred ch-HHHHHHHHHhcCCCceEEEE
Confidence 33 33445667899999997764
No 461
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=64.86 E-value=21 Score=27.93 Aligned_cols=101 Identities=9% Similarity=0.018 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC--
Q psy8015 15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-- 85 (165)
Q Consensus 15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-- 85 (165)
..+-++|-. .+.+.|.|+ +--|-.+.++|... -+|.++|+|-+-..-+..+ .+.|.|++|+..+..-
T Consensus 59 ~~yQellw~-~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i~f~egss~dpai~e 134 (237)
T COG3510 59 WNYQELLWE-LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDILFIEGSSTDPAIAE 134 (237)
T ss_pred HHHHHHHHh-cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCeEEEeCCCCCHHHHH
Confidence 345555554 456899999 88887777777642 3899999987766544322 5689999999754210
Q ss_pred ----CCCCccEEEEcCCCCCch-------HHHHhccccCcEEEEE
Q psy8015 86 ----DNGPYDAIHVGAAYPRYP-------EIFIHHLKSGGRLVIP 119 (165)
Q Consensus 86 ----~~~~fD~I~i~~~~~~~p-------~~l~~~LkpgG~lvi~ 119 (165)
....|-.||+.-...+-. +.+..+|.-|-.+|+.
T Consensus 135 qi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 135 QIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred HHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEe
Confidence 013344676654333222 2345666677777774
No 462
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=64.59 E-value=9.3 Score=26.34 Aligned_cols=78 Identities=13% Similarity=-0.001 Sum_probs=46.8
Q ss_pred eEEEEccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--CCCCCccEEEEcCCCCCchHHH
Q psy8015 29 DCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--GDNGPYDAIHVGAAYPRYPEIF 106 (165)
Q Consensus 29 ~vLei~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--~~~~~fD~I~i~~~~~~~p~~l 106 (165)
+||=+||+|..|..++.. +-+.+ ++.|+ ++++...+..+.. .....||+|+++.-..+.-+.+
T Consensus 3 kILlvCg~G~STSlla~k------------~k~~~--~e~gi-~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i 67 (104)
T PRK09590 3 KALIICAAGMSSSMMAKK------------TTEYL--KEQGK-DIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQF 67 (104)
T ss_pred EEEEECCCchHHHHHHHH------------HHHHH--HHCCC-ceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHH
Confidence 566449999988877642 22222 33455 3566555543321 1124699999977666666777
Q ss_pred HhccccCcEEEEEec
Q psy8015 107 IHHLKSGGRLVIPIG 121 (165)
Q Consensus 107 ~~~LkpgG~lvi~~~ 121 (165)
.+...+.|.=|..++
T Consensus 68 ~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 68 EEAGAKVGKPVVQIP 82 (104)
T ss_pred HHHhhhcCCCEEEeC
Confidence 777766666555544
No 463
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=64.24 E-value=9.7 Score=28.76 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=40.3
Q ss_pred HHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCCCCc----------h------
Q psy8015 41 TTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAYPRY----------P------ 103 (165)
Q Consensus 41 ~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~~~~----------p------ 103 (165)
..|+.-+.+|.++|.++--++.- ++. .+. .+...|-...|. ..++||.+.+-.+.++. |
T Consensus 18 ~aL~~GA~~iltveyn~L~i~~~-~~d-r~s--si~p~df~~~~~~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~ 93 (177)
T PF03269_consen 18 MALQHGAAKILTVEYNKLEIQEE-FRD-RLS--SILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRA 93 (177)
T ss_pred HHHHcCCceEEEEeecccccCcc-ccc-ccc--cccHHHHHHHHHHhhccchhhheechhccccccccCCCCCccccHHH
Confidence 34445567899999876322211 000 000 111111111121 13578887776554321 1
Q ss_pred -HHHHhccccCcEEEEEecC
Q psy8015 104 -EIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 104 -~~l~~~LkpgG~lvi~~~~ 122 (165)
..+.+.|||||+|++.++-
T Consensus 94 m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 94 MAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred HHHHHHhhccCCeEEEEeec
Confidence 2567899999999986653
No 464
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=63.40 E-value=51 Score=24.61 Aligned_cols=91 Identities=12% Similarity=0.068 Sum_probs=51.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCeEEEE-cc--ccH-HHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC
Q psy8015 8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TS--NTK-QSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS 83 (165)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~G--sG~-~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~ 83 (165)
+.++.+..++++.+..--.+++||=+ +| .|. .+..|.....+|+.++.+.+ +..+
T Consensus 25 p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~--------------------~l~~- 83 (168)
T cd01080 25 PCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK--------------------NLKE- 83 (168)
T ss_pred CChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch--------------------hHHH-
Confidence 44667777777766432478999999 66 255 44555544446777776521 1111
Q ss_pred CCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCC
Q psy8015 84 FGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 84 ~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~ 124 (165)
.....|+||...+.+++-.. +.+++ |.+++.+..+.
T Consensus 84 --~l~~aDiVIsat~~~~ii~~--~~~~~-~~viIDla~pr 119 (168)
T cd01080 84 --HTKQADIVIVAVGKPGLVKG--DMVKP-GAVVIDVGINR 119 (168)
T ss_pred --HHhhCCEEEEcCCCCceecH--HHccC-CeEEEEccCCC
Confidence 12357888777665543321 23444 57777666543
No 465
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=63.26 E-value=36 Score=25.44 Aligned_cols=72 Identities=15% Similarity=-0.033 Sum_probs=39.7
Q ss_pred HhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC-CCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015 43 LPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS-FGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 43 la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~-~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
+++...+|.+.+......+- |..+.+++.+|-.-. .+...+.|++++-....-....+.+.|+|||.+++..
T Consensus 25 ~~~~G~~V~~~~~ygs~~RG------G~~~~~vris~~~i~~~~~~~~~D~lva~~~~~~~~~~~~~~l~~gg~vi~ns 97 (181)
T PRK08534 25 AFEDGKFSQAFPFFGVERRG------APVMAFTRIDDKPIRLRSQIYEPDYVIVQDPTLLDSVDVTSGLKKDGIIIINT 97 (181)
T ss_pred HHhcCCeEEEEeccChhhcC------CcEEEEEEEcCCcccCcccCCCCCEEEEcCHHHhcchhHhcCcCCCcEEEEEC
Confidence 33445688888876633321 222345555553211 1234578988774332111113467899999999875
No 466
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=63.13 E-value=9.3 Score=30.16 Aligned_cols=37 Identities=8% Similarity=0.162 Sum_probs=28.2
Q ss_pred CeEEEE-ccccHHHHHHhccC----------CcEEEEeCCHHHHHhcc
Q psy8015 28 LDCLAL-TSNTKQSTTLPTFI----------PNSFNINVYYYLSGGPL 64 (165)
Q Consensus 28 ~~vLei-~GsG~~t~~la~~~----------~~V~aiD~~~~~~~~A~ 64 (165)
-+|+|+ .|+|.++.-+.+.. -+++-+|.|+.+.+.-+
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~ 67 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQK 67 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHH
Confidence 699999 99999997766532 26899999999987664
No 467
>KOG1197|consensus
Probab=63.10 E-value=46 Score=27.30 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=55.4
Q ss_pred CCCCeEEEE---ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCC-eEEEEccCCC---CCCCCCCccEEEEc
Q psy8015 25 SKRLDCLAL---TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGRA---SFGDNGPYDAIHVG 96 (165)
Q Consensus 25 ~~~~~vLei---~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~~---~~~~~~~fD~I~i~ 96 (165)
+||+.||-- -|.|.....|++.. .++++.--..+-.++|+. .|.+. +.+...|... ........|+++=.
T Consensus 145 kpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ake--nG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDs 222 (336)
T KOG1197|consen 145 KPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKE--NGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDS 222 (336)
T ss_pred CCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHh--cCCcceeeccchhHHHHHHhccCCCCceeeecc
Confidence 789998865 34444444455444 477887777777777752 24332 4444444321 11112357877655
Q ss_pred CCCCCchHHHHhccccCcEEEEEecC
Q psy8015 97 AAYPRYPEIFIHHLKSGGRLVIPIGD 122 (165)
Q Consensus 97 ~~~~~~p~~l~~~LkpgG~lvi~~~~ 122 (165)
-........+ ..|||+|.+|- .+.
T Consensus 223 vG~dt~~~sl-~~Lk~~G~mVS-fG~ 246 (336)
T KOG1197|consen 223 VGKDTFAKSL-AALKPMGKMVS-FGN 246 (336)
T ss_pred ccchhhHHHH-HHhccCceEEE-ecc
Confidence 5555555554 88999999876 444
No 468
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=63.06 E-value=52 Score=26.15 Aligned_cols=92 Identities=13% Similarity=-0.022 Sum_probs=49.3
Q ss_pred CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC-CCCCCCCccEEEEcCC
Q psy8015 24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA-SFGDNGPYDAIHVGAA 98 (165)
Q Consensus 24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~-~~~~~~~fD~I~i~~~ 98 (165)
..++++|+=. + +.|..+..+++.. .+|+.+.. ++..+.++ .+|...+.....+... ... .+.+|.++-...
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~--~~g~~~~~~~~~~~~~~~~~-~~~~d~vl~~~~ 212 (331)
T cd08273 137 VLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALR--ELGATPIDYRTKDWLPAMLT-PGGVDVVFDGVG 212 (331)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHH--HcCCeEEcCCCcchhhhhcc-CCCceEEEECCc
Confidence 4678888755 3 3344455555544 47888876 66555553 2332111000011100 011 146898875444
Q ss_pred CCCchHHHHhccccCcEEEEEe
Q psy8015 99 YPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 99 ~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
... .+..++.|+++|+++..-
T Consensus 213 ~~~-~~~~~~~l~~~g~~v~~g 233 (331)
T cd08273 213 GES-YEESYAALAPGGTLVCYG 233 (331)
T ss_pred hHH-HHHHHHHhcCCCEEEEEc
Confidence 333 556679999999987654
No 469
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=62.82 E-value=42 Score=25.24 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=37.8
Q ss_pred CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC-CCCCCccEEEEcCCCCCchH-HHHhccccCcEEEEEe
Q psy8015 47 IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF-GDNGPYDAIHVGAAYPRYPE-IFIHHLKSGGRLVIPI 120 (165)
Q Consensus 47 ~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~-~~~~~fD~I~i~~~~~~~p~-~l~~~LkpgG~lvi~~ 120 (165)
..+|++.+......+ =|..+.+++.+|-.-.. .....+|++++-... .+.. ...+.|+|||.+++..
T Consensus 29 G~~v~~~~~ygs~~R------GG~~~~~vRis~~~i~~~~~~~~~Dilva~~~~-~~~~~~~~~~l~~~g~vi~n~ 97 (185)
T PRK14029 29 GKYVQAFPFFGVERR------GAPVTAFTRIDEKPIRIKTQIYEPDVVVVLDPS-LLDTVDVTAGLKDGGIVIVNT 97 (185)
T ss_pred CCeEEEeeccChhhc------CCcEEEEEEEcCCcccCccccCCCCEEEEcCHH-HhhhchHhhCcCCCcEEEEEC
Confidence 357888776653322 12223556666532221 235688988774321 1111 2467899999998764
No 470
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.43 E-value=27 Score=30.13 Aligned_cols=68 Identities=4% Similarity=-0.087 Sum_probs=39.2
Q ss_pred CCCeEEEEccccHHHHHHhc----cCCcEEEEeCCHH-HHHh-cc-cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015 26 KRLDCLALTSNTKQSTTLPT----FIPNSFNINVYYY-LSGG-PL-SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~----~~~~V~aiD~~~~-~~~~-A~-~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~ 98 (165)
.+++|+=+ |.|..+..+|+ ...+|+.+|.++. ..+. .+ ++.. ++++..++... ....+|+|+++.+
T Consensus 15 ~~~~v~vi-G~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~---gv~~~~~~~~~---~~~~~D~Vv~s~G 87 (480)
T PRK01438 15 QGLRVVVA-GLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL---GATVRLGPGPT---LPEDTDLVVTSPG 87 (480)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc---CCEEEECCCcc---ccCCCCEEEECCC
Confidence 45677666 55555544443 3458999996653 2222 12 3333 57777766433 1245899999866
Q ss_pred CC
Q psy8015 99 YP 100 (165)
Q Consensus 99 ~~ 100 (165)
.+
T Consensus 88 i~ 89 (480)
T PRK01438 88 WR 89 (480)
T ss_pred cC
Confidence 53
No 471
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=61.99 E-value=8 Score=27.57 Aligned_cols=86 Identities=10% Similarity=-0.046 Sum_probs=46.2
Q ss_pred ccccHHHHHHhc----cCCcEEEEeCCHHHHHhcc-----cccCCCCCeEEEEccCCCCC-CCCCCccEEEEcCCCCCc-
Q psy8015 34 TSNTKQSTTLPT----FIPNSFNINVYYYLSGGPL-----SSTIDPDHDYDLIADGRASF-GDNGPYDAIHVGAAYPRY- 102 (165)
Q Consensus 34 ~GsG~~t~~la~----~~~~V~aiD~~~~~~~~A~-----~~~~~~~nV~~~~gD~~~~~-~~~~~fD~I~i~~~~~~~- 102 (165)
.|.|.++..+|. ...+|+.+...+ .++.-+ ++..+ .+-.+......... ....+||+||+.--....
T Consensus 4 ~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~~~ 81 (151)
T PF02558_consen 4 IGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPD-GDETVQPPIVISAPSADAGPYDLVIVAVKAYQLE 81 (151)
T ss_dssp ESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETT-EEEEEEEEEEESSHGHHHSTESEEEE-SSGGGHH
T ss_pred ECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecc-cceecccccccCcchhccCCCcEEEEEecccchH
Confidence 577866655554 346899999999 444332 22111 11111111111111 124689999997543333
Q ss_pred --hHHHHhccccCcEEEEEec
Q psy8015 103 --PEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 103 --p~~l~~~LkpgG~lvi~~~ 121 (165)
.+.+.+.++|+..++...+
T Consensus 82 ~~l~~l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 82 QALQSLKPYLDPNTTIVSLQN 102 (151)
T ss_dssp HHHHHHCTGEETTEEEEEESS
T ss_pred HHHHHHhhccCCCcEEEEEeC
Confidence 3457778888877666543
No 472
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=61.40 E-value=21 Score=29.72 Aligned_cols=92 Identities=7% Similarity=-0.120 Sum_probs=59.5
Q ss_pred CCCCeEEEEccc---cHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCC-eEEEEccCCCCCCC--CCCccEEEEcC
Q psy8015 25 SKRLDCLALTSN---TKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGRASFGD--NGPYDAIHVGA 97 (165)
Q Consensus 25 ~~~~~vLei~Gs---G~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~~~~~~--~~~fD~I~i~~ 97 (165)
++|++|+=-..+ |.....+|++- .+|+++==+++-.+... +.+|.+. +.+...|..+.+.+ ....|+. ...
T Consensus 149 k~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~-~~lGfD~~idyk~~d~~~~L~~a~P~GIDvy-feN 226 (340)
T COG2130 149 KAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLT-EELGFDAGIDYKAEDFAQALKEACPKGIDVY-FEN 226 (340)
T ss_pred CCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHH-HhcCCceeeecCcccHHHHHHHHCCCCeEEE-EEc
Confidence 567776644444 55566677764 58999998888777664 2356553 55555554433322 1356744 455
Q ss_pred CCCCchHHHHhccccCcEEEE
Q psy8015 98 AYPRYPEIFIHHLKSGGRLVI 118 (165)
Q Consensus 98 ~~~~~p~~l~~~LkpgG~lvi 118 (165)
.-..+.|.++..|++.+|+.+
T Consensus 227 VGg~v~DAv~~~ln~~aRi~~ 247 (340)
T COG2130 227 VGGEVLDAVLPLLNLFARIPV 247 (340)
T ss_pred CCchHHHHHHHhhccccceee
Confidence 555788888999999999876
No 473
>KOG2539|consensus
Probab=61.10 E-value=33 Score=30.16 Aligned_cols=98 Identities=10% Similarity=-0.037 Sum_probs=58.1
Q ss_pred CCCeEEEE-ccccHHHH--H-Hhcc-CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEE-----ccCCCCCCCCCCccEE
Q psy8015 26 KRLDCLAL-TSNTKQST--T-LPTF-IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLI-----ADGRASFGDNGPYDAI 93 (165)
Q Consensus 26 ~~~~vLei-~GsG~~t~--~-la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~-----gD~~~~~~~~~~fD~I 93 (165)
..+.+.|+ .|.|.-.- . +-+. ...++.||.+..|..... ++. |-.+-+.+. -+.....+....||++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCchhccccchhcccCCCCcccceeeE
Confidence 45667777 66553332 2 2222 256899999999999884 332 111111111 1222223334569999
Q ss_pred EEcCCCCCch----------HHHHhccccCcEEEEEecCCC
Q psy8015 94 HVGAAYPRYP----------EIFIHHLKSGGRLVIPIGDTK 124 (165)
Q Consensus 94 ~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~~~~ 124 (165)
++.-...++. ..|....++|+.+|+.....+
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9986655432 257889999999999875443
No 474
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=61.07 E-value=25 Score=29.26 Aligned_cols=93 Identities=10% Similarity=-0.095 Sum_probs=52.2
Q ss_pred CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCC-eEEEEccC------------------
Q psy8015 24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDH-DYDLIADG------------------ 80 (165)
Q Consensus 24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~------------------ 80 (165)
..++++||=. + +.|..+..+|+.. .++++++.+++..+.++ ++|.+. +....-+.
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~--~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCR--ALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKE 268 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH--HcCCCEEEcccccccccccccccchhhhhhhhc
Confidence 3577888766 4 3445555566654 47888999888888774 244321 11000000
Q ss_pred -------CCCCCCCC-CccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015 81 -------RASFGDNG-PYDAIHVGAAYPRYPEIFIHHLKSGGRLVIP 119 (165)
Q Consensus 81 -------~~~~~~~~-~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~ 119 (165)
...+.... .+|+++-... ....+..++.|+++|+++..
T Consensus 269 ~~~~~~~v~~l~~~~~g~d~vid~~g-~~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 269 ARRFGKAIWDILGGREDPDIVFEHPG-RATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred cchHHHHHHHHhCCCCCCeEEEECCc-hHhHHHHHHHhccCCEEEEE
Confidence 00011112 5897775433 23345567999999999874
No 475
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=60.52 E-value=10 Score=31.09 Aligned_cols=70 Identities=11% Similarity=-0.063 Sum_probs=39.6
Q ss_pred ccccHHHHHHhccC-----CcEEEEeCCHHHHHhcc--cc-cCCCCCeEE----EEccCCCC-----CCCCCCccEEEEc
Q psy8015 34 TSNTKQSTTLPTFI-----PNSFNINVYYYLSGGPL--SS-TIDPDHDYD----LIADGRAS-----FGDNGPYDAIHVG 96 (165)
Q Consensus 34 ~GsG~~t~~la~~~-----~~V~aiD~~~~~~~~A~--~~-~~~~~nV~~----~~gD~~~~-----~~~~~~fD~I~i~ 96 (165)
-|+|+++..|++.. .+++.+|.|+.-+-.-+ ++ ...-+++++ +.+|..+. ......+|.||-.
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence 68899998888753 57999999998877664 32 122335654 47887531 1123478999999
Q ss_pred CCCCCch
Q psy8015 97 AAYPRYP 103 (165)
Q Consensus 97 ~~~~~~p 103 (165)
++..++|
T Consensus 85 AA~KhVp 91 (293)
T PF02719_consen 85 AALKHVP 91 (293)
T ss_dssp -----HH
T ss_pred hhcCCCC
Confidence 9988776
No 476
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=60.32 E-value=40 Score=27.17 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=46.8
Q ss_pred CCCeEEEEccccHHHHHHhccCC------cEEEEeCCHHHHHhcc--c-ccCCCCC-eEEEEccCC-CCCC----CCCCc
Q psy8015 26 KRLDCLALTSNTKQSTTLPTFIP------NSFNINVYYYLSGGPL--S-STIDPDH-DYDLIADGR-ASFG----DNGPY 90 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~~~~------~V~aiD~~~~~~~~A~--~-~~~~~~n-V~~~~gD~~-~~~~----~~~~f 90 (165)
++-+.||| |+|. -++-++.| +.++.|+|+..++.|+ + .+-++++ ++++...-. ..++ ..+.|
T Consensus 78 ~~i~~LDI-GvGA--nCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDI-GVGA--NCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEee-ccCc--ccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccccccee
Confidence 34567888 4442 23344432 6899999999999996 2 2224443 676654322 1222 24789
Q ss_pred cEEEEcCCCCCchH
Q psy8015 91 DAIHVGAAYPRYPE 104 (165)
Q Consensus 91 D~I~i~~~~~~~p~ 104 (165)
|+..|+..++.-.+
T Consensus 155 d~tlCNPPFh~s~~ 168 (292)
T COG3129 155 DATLCNPPFHDSAA 168 (292)
T ss_pred eeEecCCCcchhHH
Confidence 99999988875433
No 477
>KOG2798|consensus
Probab=59.83 E-value=26 Score=29.35 Aligned_cols=47 Identities=9% Similarity=0.026 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCC-------CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHH
Q psy8015 15 AKYVTYLSGHSK-------RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSG 61 (165)
Q Consensus 15 ~~~l~~l~~~~~-------~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~ 61 (165)
+.+++.|..+.| .-++|=- ||.|-++-.||.++-.+-+=|.|--|+=
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli 186 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLI 186 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHH
Confidence 345555544432 3567877 9999999999988766666677776654
No 478
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=59.71 E-value=33 Score=26.23 Aligned_cols=74 Identities=8% Similarity=-0.117 Sum_probs=45.6
Q ss_pred CCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC-----------C-CCC
Q psy8015 26 KRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS-----------F-GDN 87 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~-----------~-~~~ 87 (165)
+++++|=.-|+|.++..+++. ..+|+.++.+++-.+... ++..+..++.++..|.... + ...
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 90 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQF 90 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHh
Confidence 456666556667666655543 358999999986654432 4444445677887776421 1 112
Q ss_pred CCccEEEEcCCC
Q psy8015 88 GPYDAIHVGAAY 99 (165)
Q Consensus 88 ~~fD~I~i~~~~ 99 (165)
++.|.++.+++.
T Consensus 91 ~~id~vi~~Ag~ 102 (247)
T PRK08945 91 GRLDGVLHNAGL 102 (247)
T ss_pred CCCCEEEECCcc
Confidence 478999887654
No 479
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.58 E-value=41 Score=28.72 Aligned_cols=95 Identities=8% Similarity=0.044 Sum_probs=50.3
Q ss_pred CCeEEEE--ccccHHH-HHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC-Cc
Q psy8015 27 RLDCLAL--TSNTKQS-TTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP-RY 102 (165)
Q Consensus 27 ~~~vLei--~GsG~~t-~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~-~~ 102 (165)
+++++=+ .|+|..+ ..|++...+|+..|.++..-...++++.. .++++..+...... ...+|+|+.+.+.+ .-
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~-~gi~~~~g~~~~~~--~~~~d~vv~spgi~~~~ 81 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMF-DGLVFYTGRLKDAL--DNGFDILALSPGISERQ 81 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhcc-CCcEEEeCCCCHHH--HhCCCEEEECCCCCCCC
Confidence 4566555 3444333 22333456899999876532222333211 25677666532211 13689999998775 22
Q ss_pred hH---------------HH-Hhcccc-CcEEEEEecCCC
Q psy8015 103 PE---------------IF-IHHLKS-GGRLVIPIGDTK 124 (165)
Q Consensus 103 p~---------------~l-~~~Lkp-gG~lvi~~~~~~ 124 (165)
|. ++ .+.+++ +.+++.+.|+.+
T Consensus 82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~G 120 (445)
T PRK04308 82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNG 120 (445)
T ss_pred HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCc
Confidence 21 12 344433 467777777654
No 480
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=59.49 E-value=18 Score=28.73 Aligned_cols=90 Identities=6% Similarity=-0.098 Sum_probs=49.8
Q ss_pred CCeEEEEccccHHH---HHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEcc---CCCCCCCCCCccEEEEcCCC
Q psy8015 27 RLDCLALTSNTKQS---TTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIAD---GRASFGDNGPYDAIHVGAAY 99 (165)
Q Consensus 27 ~~~vLei~GsG~~t---~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD---~~~~~~~~~~fD~I~i~~~~ 99 (165)
+++||=..++|.++ ..+|+.. .+|+.++.+++-.+.++ ++|.+.+--.... ...... ...+|.++-....
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~~~~ 223 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLK--SLGASEVLDREDLLDESKKPLL-KARWAGAIDTVGG 223 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--hcCCcEEEcchhHHHHHHHHhc-CCCccEEEECCch
Confidence 45766334445444 4555544 37999999988777663 3454322111110 001111 2358977754333
Q ss_pred CCchHHHHhccccCcEEEEEe
Q psy8015 100 PRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 100 ~~~p~~l~~~LkpgG~lvi~~ 120 (165)
...+..++.|+++|+++..-
T Consensus 224 -~~~~~~~~~l~~~g~~v~~g 243 (325)
T cd05280 224 -DVLANLLKQTKYGGVVASCG 243 (325)
T ss_pred -HHHHHHHHhhcCCCEEEEEe
Confidence 34566689999999987653
No 481
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=58.54 E-value=74 Score=23.70 Aligned_cols=93 Identities=6% Similarity=-0.149 Sum_probs=48.8
Q ss_pred CCCeEEEEccccHHHHHHhc----cCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC--C-CCCCCccEEEEc
Q psy8015 26 KRLDCLALTSNTKQSTTLPT----FIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS--F-GDNGPYDAIHVG 96 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~----~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~--~-~~~~~fD~I~i~ 96 (165)
++++++=+-|+|..+..+++ ...+|+.++++++.++... ++. ..+.++...|..+. + ......|+|+..
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRA--RFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh--hcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 45677666446766655444 3458999998877655432 211 11233333343210 0 112468988887
Q ss_pred CCCCCc-hHHHHhccccCcEEEEEec
Q psy8015 97 AAYPRY-PEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 97 ~~~~~~-p~~l~~~LkpgG~lvi~~~ 121 (165)
.+.... +......+++ |.+++-+.
T Consensus 105 t~~g~~~~~~~~~~~~~-~~vv~D~~ 129 (194)
T cd01078 105 GAAGVELLEKLAWAPKP-LAVAADVN 129 (194)
T ss_pred CCCCceechhhhcccCc-eeEEEEcc
Confidence 666543 3222233444 67777544
No 482
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=58.53 E-value=32 Score=26.26 Aligned_cols=71 Identities=7% Similarity=-0.056 Sum_probs=46.6
Q ss_pred CCeEEEE-ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC----------CCCC
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG----------DNGP 89 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~----------~~~~ 89 (165)
++++| | -|+|+++..+++. ..+|+.++.+++-.+... ++..+ .+++++..|..+.-. ..++
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 5 7789988888774 358999999987765542 33222 368888888753110 1146
Q ss_pred ccEEEEcCCC
Q psy8015 90 YDAIHVGAAY 99 (165)
Q Consensus 90 fD~I~i~~~~ 99 (165)
.|+++.+++.
T Consensus 82 ~d~vi~~a~~ 91 (258)
T PRK12429 82 VDILVNNAGI 91 (258)
T ss_pred CCEEEECCCC
Confidence 8999887654
No 483
>PRK07890 short chain dehydrogenase; Provisional
Probab=58.30 E-value=21 Score=27.37 Aligned_cols=73 Identities=11% Similarity=-0.116 Sum_probs=46.1
Q ss_pred CCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC----------CCCCC
Q psy8015 26 KRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF----------GDNGP 89 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~----------~~~~~ 89 (165)
+++++|=.-|+|.++..+++. ..+|+.++.+++-.+... ++..+ .++.++..|..+.. ...++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 356677337777777766654 358999999987665442 22222 35788888875311 11256
Q ss_pred ccEEEEcCCC
Q psy8015 90 YDAIHVGAAY 99 (165)
Q Consensus 90 fD~I~i~~~~ 99 (165)
.|.++.+++.
T Consensus 83 ~d~vi~~ag~ 92 (258)
T PRK07890 83 VDALVNNAFR 92 (258)
T ss_pred ccEEEECCcc
Confidence 8999888754
No 484
>PRK05844 pyruvate flavodoxin oxidoreductase subunit gamma; Validated
Probab=58.17 E-value=48 Score=24.90 Aligned_cols=67 Identities=13% Similarity=0.002 Sum_probs=36.1
Q ss_pred CCcEEEEeCCHHHHHhcccccCCCCC-eEEEEccCCCC-CCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015 47 IPNSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGRAS-FGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 47 ~~~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~~~-~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
..+|.+......-. .|-.+ ..++.+|-.-. .+.-..+|.+++-...........+.|+|||.+++..
T Consensus 29 G~~v~~~~~ygs~~-------RGg~~~~~vris~~pI~~~~~v~~~Dilv~ld~~~~~~~~~~~~l~~~g~iiins 97 (186)
T PRK05844 29 GKEVQAFAFYGSAK-------RGAAMTAYNRIDDEPILNHEKFMQPDYVLVIDPGLVFIENIFANEKEDTKYIITT 97 (186)
T ss_pred CceEEEeeccChhh-------cCCcEEEEEEECCCcccCCCCcCCCCEEEEecHHHhccccHhcCcCCCeEEEEEC
Confidence 45777776544222 24333 45555552111 1112378988885422111224478899999998864
No 485
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=58.00 E-value=55 Score=25.51 Aligned_cols=94 Identities=12% Similarity=-0.096 Sum_probs=51.1
Q ss_pred CCCCCeEEEEccccHHHHHH---hcc-CCcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCC---CCCCCCCCccEEEE
Q psy8015 24 HSKRLDCLALTSNTKQSTTL---PTF-IPNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGR---ASFGDNGPYDAIHV 95 (165)
Q Consensus 24 ~~~~~~vLei~GsG~~t~~l---a~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~---~~~~~~~~fD~I~i 95 (165)
..+++++|=.-++|.++..+ ++. ..+|+.++.+++..+.++ .++.+.+ .....+.. ........+|.++-
T Consensus 142 ~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 219 (325)
T cd08253 142 AKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR--QAGADAVFNYRAEDLADRILAATAGQGVDVIIE 219 (325)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEE
Confidence 45778877334345444443 332 357999999888777663 2343221 10000100 01112246898886
Q ss_pred cCCCCCchHHHHhccccCcEEEEEe
Q psy8015 96 GAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 96 ~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
..... ..+..++.|+++|+++..-
T Consensus 220 ~~~~~-~~~~~~~~l~~~g~~v~~~ 243 (325)
T cd08253 220 VLANV-NLAKDLDVLAPGGRIVVYG 243 (325)
T ss_pred CCchH-HHHHHHHhhCCCCEEEEEe
Confidence 54433 2345568899999988653
No 486
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=57.93 E-value=93 Score=25.18 Aligned_cols=93 Identities=16% Similarity=0.073 Sum_probs=53.4
Q ss_pred CCCCCeEEEE-c--cccHHHHHHhccC-C--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC----------CCCCC
Q psy8015 24 HSKRLDCLAL-T--SNTKQSTTLPTFI-P--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA----------SFGDN 87 (165)
Q Consensus 24 ~~~~~~vLei-~--GsG~~t~~la~~~-~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~----------~~~~~ 87 (165)
..++++||=. + +.|..+..+|+.. + +|+++...++ .+.+ +++|.+. ++..+-.. .....
T Consensus 149 ~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~~~~-~~~~--~~~g~~~--~i~~~~~~~~~~~~~~~~~~~~~ 223 (352)
T cd08247 149 LGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRS-AELN--KKLGADH--FIDYDAHSGVKLLKPVLENVKGQ 223 (352)
T ss_pred cCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeChhH-HHHH--HHhCCCE--EEecCCCcccchHHHHHHhhcCC
Confidence 4678888777 4 3667777778753 3 6777764433 3333 3345432 22211110 11113
Q ss_pred CCccEEEEcCCCCCchHHHHhccc---cCcEEEEEec
Q psy8015 88 GPYDAIHVGAAYPRYPEIFIHHLK---SGGRLVIPIG 121 (165)
Q Consensus 88 ~~fD~I~i~~~~~~~p~~l~~~Lk---pgG~lvi~~~ 121 (165)
..+|.++-............+.|+ ++|+++...+
T Consensus 224 ~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~ 260 (352)
T cd08247 224 GKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVG 260 (352)
T ss_pred CCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeC
Confidence 468988765443344556678999 9999997544
No 487
>PRK06940 short chain dehydrogenase; Provisional
Probab=57.29 E-value=30 Score=27.34 Aligned_cols=67 Identities=6% Similarity=-0.137 Sum_probs=41.5
Q ss_pred EccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC---------CCCCCCccEEEEcCC
Q psy8015 33 LTSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS---------FGDNGPYDAIHVGAA 98 (165)
Q Consensus 33 i~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~---------~~~~~~fD~I~i~~~ 98 (165)
|||+|.++..+++. ..+|+.++++++-++.+. ++..+ .++.++..|..+. ....++.|.++.+++
T Consensus 7 ItGa~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG 85 (275)
T PRK06940 7 VIGAGGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG-FDVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAG 85 (275)
T ss_pred EECCChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 37777777666654 357999999876555432 33222 2577788886431 011257899988876
Q ss_pred CC
Q psy8015 99 YP 100 (165)
Q Consensus 99 ~~ 100 (165)
..
T Consensus 86 ~~ 87 (275)
T PRK06940 86 VS 87 (275)
T ss_pred cC
Confidence 53
No 488
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=57.06 E-value=34 Score=25.77 Aligned_cols=69 Identities=12% Similarity=-0.006 Sum_probs=39.3
Q ss_pred ccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC-CCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEec
Q psy8015 45 TFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR-ASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIG 121 (165)
Q Consensus 45 ~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~-~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~ 121 (165)
+....|++.+......+- |....+++.+|-. ......+..|++++-.... + ......|+|||.+++...
T Consensus 28 ~~G~~v~~~~~~g~~~RG------G~~~s~vRi~~~~~~~~~~~~~~D~lva~d~~~-~-~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 28 NEGFHVRTAETLGMSQRE------GSVISHLRFGDEISSPLIPEGQADLLLALEPAE-V-ARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred HcCCCeEeccccCchhhC------CeEEEEEEEcCccCCCccCCCCCCEEEEcCHHH-H-HHHHhhcCCCcEEEEECC
Confidence 334578888776643331 2223445555531 1221145789888743322 2 345678999999988753
No 489
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=56.85 E-value=27 Score=28.40 Aligned_cols=72 Identities=10% Similarity=-0.128 Sum_probs=44.3
Q ss_pred CCeEEEEccccHHHHHHhccC------CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--C-CCCCccEEEEcC
Q psy8015 27 RLDCLALTSNTKQSTTLPTFI------PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--G-DNGPYDAIHVGA 97 (165)
Q Consensus 27 ~~~vLei~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--~-~~~~fD~I~i~~ 97 (165)
+++||=.-|+|+++..+++.. .+|+.++.++.-.+... +.....+++++.+|..+.. . ....+|.||..+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~-~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~A 82 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQ-QKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA 82 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHH-HHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECc
Confidence 567763377899988887642 36899988765332211 1111246899999976421 1 013589998876
Q ss_pred CC
Q psy8015 98 AY 99 (165)
Q Consensus 98 ~~ 99 (165)
+.
T Consensus 83 g~ 84 (324)
T TIGR03589 83 AL 84 (324)
T ss_pred cc
Confidence 64
No 490
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=56.72 E-value=6.3 Score=29.42 Aligned_cols=81 Identities=9% Similarity=0.021 Sum_probs=45.5
Q ss_pred CCCeEEEEccccHHHHHHhccC----CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC-
Q psy8015 26 KRLDCLALTSNTKQSTTLPTFI----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP- 100 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~- 100 (165)
.+++|.=+ |.|..+..+|+.. -+|+++|.+......+. .. .++ ..+..+.+ ...|+|++.....
T Consensus 35 ~g~tvgIi-G~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~--~~---~~~--~~~l~ell---~~aDiv~~~~plt~ 103 (178)
T PF02826_consen 35 RGKTVGII-GYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD--EF---GVE--YVSLDELL---AQADIVSLHLPLTP 103 (178)
T ss_dssp TTSEEEEE-STSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH--HT---TEE--ESSHHHHH---HH-SEEEE-SSSST
T ss_pred CCCEEEEE-EEcCCcCeEeeeeecCCceeEEecccCChhhhcc--cc---cce--eeehhhhc---chhhhhhhhhcccc
Confidence 46777666 8888887777653 49999999998665221 00 111 11211111 2467777765432
Q ss_pred ----CchHHHHhccccCcEEE
Q psy8015 101 ----RYPEIFIHHLKSGGRLV 117 (165)
Q Consensus 101 ----~~p~~l~~~LkpgG~lv 117 (165)
-+-++.++++|+|..+|
T Consensus 104 ~T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 104 ETRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp TTTTSBSHHHHHTSTTTEEEE
T ss_pred ccceeeeeeeeeccccceEEE
Confidence 24456778888766443
No 491
>PRK07201 short chain dehydrogenase; Provisional
Probab=56.59 E-value=28 Score=31.06 Aligned_cols=66 Identities=15% Similarity=-0.040 Sum_probs=41.5
Q ss_pred ccccHHHHHHhcc------CCcEEEEeCCHHHHHhcc-cccCCCCCeEEEEccCCCCC---C-----CCCCccEEEEcCC
Q psy8015 34 TSNTKQSTTLPTF------IPNSFNINVYYYLSGGPL-SSTIDPDHDYDLIADGRASF---G-----DNGPYDAIHVGAA 98 (165)
Q Consensus 34 ~GsG~~t~~la~~------~~~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~gD~~~~~---~-----~~~~fD~I~i~~~ 98 (165)
-|||+++..+.+. ..+|+++++++......+ ....+..+++++.+|..+.. . ....+|.||-.++
T Consensus 7 GatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D~Vih~Aa 86 (657)
T PRK07201 7 GGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDIDHVVHLAA 86 (657)
T ss_pred CCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCCEEEECce
Confidence 6789999777763 247999998754433222 22223357999999976521 0 0146899887665
Q ss_pred C
Q psy8015 99 Y 99 (165)
Q Consensus 99 ~ 99 (165)
.
T Consensus 87 ~ 87 (657)
T PRK07201 87 I 87 (657)
T ss_pred e
Confidence 3
No 492
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=56.36 E-value=37 Score=27.65 Aligned_cols=65 Identities=14% Similarity=-0.051 Sum_probs=40.0
Q ss_pred eEEEE-ccccHHHHHHhccC-----CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC----CCCCccEEEEcCC
Q psy8015 29 DCLAL-TSNTKQSTTLPTFI-----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG----DNGPYDAIHVGAA 98 (165)
Q Consensus 29 ~vLei-~GsG~~t~~la~~~-----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~----~~~~fD~I~i~~~ 98 (165)
+|| | -|+|+++..+++.. .+|+++|.+.+... ++. +..+++++.+|...... ....+|.||-.++
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~--~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa 77 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLG--DLV--NHPRMHFFEGDITINKEWIEYHVKKCDVILPLVA 77 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHH--Hhc--cCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECcc
Confidence 455 5 55799999988742 37999998764322 111 22458999999752110 1135798875443
No 493
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=56.04 E-value=34 Score=29.56 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=60.3
Q ss_pred cCCchHHHHHHHHHHhcCCCCCeEEEEccccHHHHHHhcc-----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC
Q psy8015 7 SGSVSGAVAKYVTYLSGHSKRLDCLALTSNTKQSTTLPTF-----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR 81 (165)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~~~~~~vLei~GsG~~t~~la~~-----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~ 81 (165)
+.|+++..-.+.+....--.+.+||=| |.|-++...|+. ..+|+-.-++.+-++.- .++++ .++..-+
T Consensus 158 ~VSi~saAv~lA~~~~~~L~~~~vlvI-GAGem~~lva~~L~~~g~~~i~IaNRT~erA~~L-a~~~~---~~~~~l~-- 230 (414)
T COG0373 158 AVSISSAAVELAKRIFGSLKDKKVLVI-GAGEMGELVAKHLAEKGVKKITIANRTLERAEEL-AKKLG---AEAVALE-- 230 (414)
T ss_pred ccchHHHHHHHHHHHhcccccCeEEEE-cccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH-HHHhC---CeeecHH--
Confidence 456777766666666442268899998 666555444432 35777777766555432 12333 1222211
Q ss_pred CCCCCCCCccEEEEcCCCCC--ch-HHHHhccccCcE-EEEEecCC
Q psy8015 82 ASFGDNGPYDAIHVGAAYPR--YP-EIFIHHLKSGGR-LVIPIGDT 123 (165)
Q Consensus 82 ~~~~~~~~fD~I~i~~~~~~--~p-~~l~~~LkpgG~-lvi~~~~~ 123 (165)
+.......+|+||++.+-++ +. +.+.+.+++--+ +++-+..+
T Consensus 231 el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 231 ELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred HHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence 11122467999999866553 33 345566665444 56655443
No 494
>PLN00203 glutamyl-tRNA reductase
Probab=55.99 E-value=85 Score=27.91 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=60.1
Q ss_pred cCCchHHHHHHHHHHhcC--CCCCeEEEEccccHHHHHHhccC-----CcEEEEeCCHHHHHhcccccCCCCCeEEEEcc
Q psy8015 7 SGSVSGAVAKYVTYLSGH--SKRLDCLALTSNTKQSTTLPTFI-----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIAD 79 (165)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~--~~~~~vLei~GsG~~t~~la~~~-----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD 79 (165)
+.|+++..-.+.+...+. -.+.+|+=| |+|.++..+++.. .+|+.++++++.++... +.++-..+.+...+
T Consensus 244 ~vSv~s~Av~la~~~~~~~~l~~kkVlVI-GAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La-~~~~g~~i~~~~~~ 321 (519)
T PLN00203 244 AVSVSSAAVELALMKLPESSHASARVLVI-GAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALR-EEFPDVEIIYKPLD 321 (519)
T ss_pred CcCHHHHHHHHHHHhcCCCCCCCCEEEEE-eCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHhCCCceEeecHh
Confidence 345666665666554321 136777777 7788887666532 47999999987765432 11111122222222
Q ss_pred CCCCCCCCCCccEEEEcCCCC--CchHHHHhccccC----c--EEEEEecC
Q psy8015 80 GRASFGDNGPYDAIHVGAAYP--RYPEIFIHHLKSG----G--RLVIPIGD 122 (165)
Q Consensus 80 ~~~~~~~~~~fD~I~i~~~~~--~~p~~l~~~Lkpg----G--~lvi~~~~ 122 (165)
-. .......|+||...+.+ .+..++++.+.++ | ++++-+.-
T Consensus 322 dl--~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 322 EM--LACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred hH--HHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 11 11124689988865433 3455565655432 2 46666543
No 495
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=55.54 E-value=18 Score=31.19 Aligned_cols=31 Identities=3% Similarity=-0.205 Sum_probs=25.0
Q ss_pred ccccHHHHHHhc----cCCcEEEEeCCHHHHHhcc
Q psy8015 34 TSNTKQSTTLPT----FIPNSFNINVYYYLSGGPL 64 (165)
Q Consensus 34 ~GsG~~t~~la~----~~~~V~aiD~~~~~~~~A~ 64 (165)
-|-||.+..+|- ...+|+++|+++..++..+
T Consensus 15 iGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln 49 (436)
T COG0677 15 IGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN 49 (436)
T ss_pred EccccccHHHHHHHHHcCCceEeEeCCHHHHHHHh
Confidence 699998765554 4568999999999999774
No 496
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=55.48 E-value=34 Score=29.97 Aligned_cols=31 Identities=0% Similarity=-0.289 Sum_probs=23.7
Q ss_pred ccccHHHHHHhc----cC--CcEEEEeCCHHHHHhcc
Q psy8015 34 TSNTKQSTTLPT----FI--PNSFNINVYYYLSGGPL 64 (165)
Q Consensus 34 ~GsG~~t~~la~----~~--~~V~aiD~~~~~~~~A~ 64 (165)
-|.||.+..+|- .. .+|+++|++++.++..+
T Consensus 7 iG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~ 43 (473)
T PLN02353 7 IGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWN 43 (473)
T ss_pred ECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHH
Confidence 488988866554 32 45999999999999864
No 497
>PLN02427 UDP-apiose/xylose synthase
Probab=55.28 E-value=32 Score=28.61 Aligned_cols=70 Identities=11% Similarity=-0.112 Sum_probs=44.2
Q ss_pred CCeEEEE-ccccHHHHHHhccC-----CcEEEEeCCHHHHHhcccccCC----CCCeEEEEccCCCC--CC-CCCCccEE
Q psy8015 27 RLDCLAL-TSNTKQSTTLPTFI-----PNSFNINVYYYLSGGPLSSTID----PDHDYDLIADGRAS--FG-DNGPYDAI 93 (165)
Q Consensus 27 ~~~vLei-~GsG~~t~~la~~~-----~~V~aiD~~~~~~~~A~~~~~~----~~nV~~~~gD~~~~--~~-~~~~fD~I 93 (165)
.++|| | -|+|+++..+++.. .+|+++|.+++-.+.. ...+ ..+++++.+|..+. +. ....+|.|
T Consensus 14 ~~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l--~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 14 PLTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHL--LEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred CcEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhh--hccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 45777 6 77999998887732 3799999876543321 1111 13699999998642 11 11348988
Q ss_pred EEcCCC
Q psy8015 94 HVGAAY 99 (165)
Q Consensus 94 ~i~~~~ 99 (165)
|-.++.
T Consensus 91 iHlAa~ 96 (386)
T PLN02427 91 INLAAI 96 (386)
T ss_pred EEcccc
Confidence 876653
No 498
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=55.20 E-value=45 Score=24.83 Aligned_cols=68 Identities=13% Similarity=-0.057 Sum_probs=38.0
Q ss_pred cCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC-CCCCCCCccEEEEcCCCCCch-HHHHhccccCcEEEEEe
Q psy8015 46 FIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA-SFGDNGPYDAIHVGAAYPRYP-EIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 46 ~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~-~~~~~~~fD~I~i~~~~~~~p-~~l~~~LkpgG~lvi~~ 120 (165)
...+|++.+......+ =|....+++.+|-.- ...+....|++++-... .+. ....+.|+|||.+++..
T Consensus 28 ~G~~v~~~~~ygs~~r------Gg~~~~~vris~~~i~~~s~~~~~D~lva~~~~-~~~~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 28 EGKYAQAFPEFGAERR------GAPVRAFLRISDRPIRVHSQIYEPDYVVVLDPT-LLKTVNVTAGLKEDGILIVNT 97 (177)
T ss_pred cCceEEEeeccCchhc------CCcEEEEEEEcCccccCCCccCCCCEEEEcCHH-HhCccchhhCcCCCeEEEEEC
Confidence 3457888876663322 123335555665321 02234578988874421 111 12457899999999864
No 499
>PLN02206 UDP-glucuronate decarboxylase
Probab=55.08 E-value=35 Score=29.43 Aligned_cols=70 Identities=10% Similarity=-0.073 Sum_probs=43.5
Q ss_pred CCCeEEEEccccHHHHHHhccC----CcEEEEeCCHHHHHhcc-cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015 26 KRLDCLALTSNTKQSTTLPTFI----PNSFNINVYYYLSGGPL-SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAA 98 (165)
Q Consensus 26 ~~~~vLei~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~ 98 (165)
++++||=.-|+|+++.+|++.. .+|+++|....... .+ .......+++++.+|..+... ..+|.||-.++
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~-~~~~~~~~~~~~~~i~~D~~~~~l--~~~D~ViHlAa 192 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRK-ENVMHHFSNPNFELIRHDVVEPIL--LEVDQIYHLAC 192 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccch-hhhhhhccCCceEEEECCccChhh--cCCCEEEEeee
Confidence 5678774477999998888742 57999986422110 01 111223468888898755322 35798877665
No 500
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=54.75 E-value=28 Score=28.02 Aligned_cols=93 Identities=11% Similarity=-0.039 Sum_probs=48.7
Q ss_pred CCCCCeEEEE---ccccHHHHHHhccCC-cEEEEeCCH----HHHHhcccccCCCCCeEEEEc----cCCC---CCCCCC
Q psy8015 24 HSKRLDCLAL---TSNTKQSTTLPTFIP-NSFNINVYY----YLSGGPLSSTIDPDHDYDLIA----DGRA---SFGDNG 88 (165)
Q Consensus 24 ~~~~~~vLei---~GsG~~t~~la~~~~-~V~aiD~~~----~~~~~A~~~~~~~~nV~~~~g----D~~~---~~~~~~ 88 (165)
..++++||=. .+.|..+..+|+..+ +|+++..++ +-.+.+ +++|.+.+--... +... .+...
T Consensus 144 ~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~i~~~~~~- 220 (341)
T cd08290 144 LQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERL--KALGADHVLTEEELRSLLATELLKSAPGG- 220 (341)
T ss_pred cCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHH--HhcCCCEEEeCcccccccHHHHHHHHcCC-
Confidence 3678887765 345566666666543 666655443 223333 2344432111111 1100 11112
Q ss_pred CccEEEEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015 89 PYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPI 120 (165)
Q Consensus 89 ~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~ 120 (165)
.+|.|+-....... ....+.|+++|+++..-
T Consensus 221 ~~d~vld~~g~~~~-~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 221 RPKLALNCVGGKSA-TELARLLSPGGTMVTYG 251 (341)
T ss_pred CceEEEECcCcHhH-HHHHHHhCCCCEEEEEe
Confidence 58988865444333 34679999999988653
Done!