RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8015
(165 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 80.3 bits (199), Expect = 2e-19
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
++ DGR + + PYDAIHVGAA P P+ I LK GGRL++P+G QML YDK
Sbjct: 138 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 197
Query: 135 HNGTIDIQHWGVV 147
+G+I ++ V
Sbjct: 198 QDGSIKMKPLMGV 210
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 80.0 bits (198), Expect = 3e-19
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 75 DLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKF 134
++ + G +DAIHVGA+ PEI + L G+L+IPI + Q+L K
Sbjct: 148 NIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDYTQVLYEITK- 206
Query: 135 HNGTIDIQHWGVV 147
NG I V
Sbjct: 207 KNGKIIKDRLFDV 219
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 80.0 bits (198), Expect = 3e-19
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIG-DTKQQMLTIYDKF 134
+ DGR + N PY+AIHVGAA P P I+ L SGGRL++P+G D Q + YDK
Sbjct: 150 VEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKD 209
Query: 135 HNGTIDIQHWGVV 147
NG +++ V
Sbjct: 210 ANGKVEMTRLMGV 222
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 76.9 bits (190), Expect = 4e-18
Identities = 20/70 (28%), Positives = 28/70 (40%)
Query: 77 IADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHN 136
+ DG + + PYD + V A P LK GG +++PIG + Q L K N
Sbjct: 122 LGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKKGN 181
Query: 137 GTIDIQHWGV 146
V
Sbjct: 182 SPSLENLGEV 191
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 75.0 bits (185), Expect = 2e-17
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 77 IADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKFH 135
+ DG F PYD I V A P+ PE I LK GG+L+IP+G Q L K
Sbjct: 146 LGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTK 205
Query: 136 NGTIDIQHWGVVQVGLL 152
+G H GV V L+
Sbjct: 206 DGIKIKNHGGVAFVPLI 222
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 74.1 bits (183), Expect = 4e-17
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 77 IADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHN 136
+ DG + PYD I+ AA P+ PE I LK GG+L++P+G Q+++ +K +
Sbjct: 134 VGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYLQRLVLA-EKRGD 192
Query: 137 GTIDIQHWGVVQVGLL 152
I V V L+
Sbjct: 193 EIIIKDCGPVAFVPLV 208
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 73.8 bits (182), Expect = 4e-17
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 77 IADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHN 136
DG + P+DAI V AA P P + L GG LV+P+G+ + Q L +
Sbjct: 131 HGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGE-EHQYLKRVRRRGG 189
Query: 137 GTIDIQHWGVVQVGLL 152
I V V L+
Sbjct: 190 EFIIDTVEAVRFVPLV 205
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 67.5 bits (165), Expect = 4e-14
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 78 ADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD--TKQQMLTIYDKFH 135
DG + PYD I V PE + LK GGR+++PI +++Q ++ K
Sbjct: 133 GDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKK-K 191
Query: 136 NGTIDIQHWGVV 147
+ + +
Sbjct: 192 DPYLVGNYKLET 203
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 5e-08
Identities = 30/165 (18%), Positives = 46/165 (27%), Gaps = 34/165 (20%)
Query: 19 TYLSG---HSKRLDCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYD 75
YL G H+ LA + TTL + + Y + D +
Sbjct: 94 CYLEGNDIHA-----LAAKLLQENDTTLVK----TKELIKNYITARIMAKRPFDKKSNSA 144
Query: 76 L---IADGRASF-------GDNGPY--DAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT 123
L + +G A G+ Y + + Y I S L I T
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK--FSAETLSELIRTT 202
Query: 124 KQQMLTIYDKFHNGTIDIQHW--GVVQV-GLLYDVKAGYSMPIIG 165
+K ++I W Y + S P+IG
Sbjct: 203 LDA-----EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 31.8 bits (72), Expect = 0.064
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 78 ADGRASFGDNGPYDAIHVGAAYPRYPEIFIH---HLKSGGRLVIPIG--DTKQQMLTIYD 132
A D D + +G + EI LKS G +V+ DT + + +
Sbjct: 97 AFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLE 156
Query: 133 KFHNGTIDI 141
H +++
Sbjct: 157 D-HGYMVEV 164
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 30.4 bits (69), Expect = 0.18
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIF---IHHLKSGGRLVIPIG--DTKQQMLTI 130
+ D + D VG + EI LK GGR+++ +TK + +
Sbjct: 87 MEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMEC 146
Query: 131 YDKFHNGTIDI 141
++I
Sbjct: 147 LRD-LGFDVNI 156
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 30.4 bits (68), Expect = 0.22
Identities = 6/48 (12%), Positives = 8/48 (16%), Gaps = 8/48 (16%)
Query: 78 ADGRASFGDNGPYDAIHVGAAYPRYPEIFIHH----LKSGGRLVIPIG 121
G G P+ I P I +
Sbjct: 100 GKGELPAGLGAPFGLIVSRRG----PTSVILRLPELAAPDAHFLYVGP 143
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 29.8 bits (67), Expect = 0.37
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 9/50 (18%)
Query: 76 LIADGRASFGDNGPYDAI-------HVGAAYPRYPEIFIHHLKSGGRLVI 118
+ D + D G + E+ LK GG ++I
Sbjct: 91 IHNDAAGYVAN-EKCDVAACVGATWIAGG-FAGAEELLAQSLKPGGIMLI 138
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 29.2 bits (65), Expect = 0.49
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 70 PDHDYDLIADGRASFGDNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLV--IPIGDTKQQ 126
+ D + + G + A V P Y E L G + +P + +
Sbjct: 139 GKNVKFFNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIK 198
Query: 127 ML 128
+L
Sbjct: 199 LL 200
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 27.4 bits (60), Expect = 1.9
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 88 GPYDAIHVGAAYPRYPEIFIHH----LKSGGRLVIPI 120
D I+ A P EI I + LK GG +I I
Sbjct: 142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.1
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 19/40 (47%)
Query: 38 KQS-----TTLPTFIPNSFNINVYYYLSGGP---LSSTID 69
KQ+ +L + +S P + +T++
Sbjct: 19 KQALKKLQASLKLYADDS-----------APALAIKATME 47
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 27.4 bits (60), Expect = 2.3
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 91 DAIHVGAAYPRYPEIFIHH----LKSGGRLVIPI 120
D ++ A P I + + L+ GG +++ I
Sbjct: 149 DGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI 182
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 27.5 bits (60), Expect = 2.3
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 86 DNGPYDAIHVGAAYPRYPEIFIH---HLKSGGRLVIPIGDTKQQML 128
D +D + V A +F + ++ + R++ + +L
Sbjct: 185 DGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRAIL 230
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 27.2 bits (61), Expect = 2.6
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 82 ASFGDNGPYDAIHVGAA---YPRYPEIFIHHLKSGGRLVI 118
+D + + AA Y R+ +++ ++ GG ++
Sbjct: 119 EKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILS 158
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 26.8 bits (60), Expect = 2.7
Identities = 5/46 (10%), Positives = 9/46 (19%), Gaps = 3/46 (6%)
Query: 76 LIADGRASFGDNGPYDAIHVGAA---YPRYPEIFIHHLKSGGRLVI 118
+ D D + + E L L+
Sbjct: 113 QVGDPLGIAAGQRDIDILFMDCDVFNGADVLERMNRCLAKNALLIA 158
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 26.3 bits (58), Expect = 4.6
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 91 DAI-HVGAAYPRYPEIFIHHLKSGGRLVI 118
+A+ G + L G R+V
Sbjct: 124 EAVFIGGGGSQALYDRLWEWLAPGTRIVA 152
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 25.8 bits (57), Expect = 4.8
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 123 TKQQMLTIYDKFHNGTID 140
T++ ML
Sbjct: 4 TEKSMLLETTSTTKMETK 21
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 26.2 bits (57), Expect = 4.8
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 91 DAIHVGAAYPRYPEIFIHH----LKSGGRLVIPI 120
D I A P I + L++GG VI I
Sbjct: 149 DVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 182
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 26.1 bits (58), Expect = 5.2
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 83 SFGDNGPYDAIHVGAA---YPRYPEIFIHHLKSGGRLVI 118
S G+ +D I + A P Y + + + G ++
Sbjct: 130 SLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIG 168
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 26.1 bits (58), Expect = 5.5
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 75 DLIADGRASFGDNGPYDAIHVGAA---YPRYPEIFIHHLKSGGRLVI 118
+L+ + G YD V A Y +Y E + +K GG +
Sbjct: 137 NLLQGQES----EGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAY 179
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 26.2 bits (58), Expect = 6.0
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 75 DLIADGRASFGDNGPYDAIHVGAA---YPRYPEIFIHHLKSGGRLVI 118
++I D ++G YD I V A Y Y + I +K GG +
Sbjct: 146 EMIKDE----KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGY 188
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 25.9 bits (57), Expect = 6.3
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 69 DPDHDYDLIADGRASFGDNGPYDAI--HVGAAYPRYPEIF--IH-HLKSGGRLVI 118
H A YD I + + E+ + L GG LVI
Sbjct: 96 GEVHLASYAQLAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVI 150
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 26.1 bits (58), Expect = 6.5
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 85 GDNGPYDAIHVGAA---YPRYPEIFIHHLKSGGRLVI 118
G +D I + A Y Y E+ + + G + I
Sbjct: 132 GGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAI 168
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 25.9 bits (57), Expect = 6.5
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 91 DAIHVGAA--YPRYPEIFIHHLKSGGRLVIP 119
D I +G P L GGRLV
Sbjct: 96 DVIFIGGGLTAPGVFAAAWKRLPVGGRLVAN 126
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 25.7 bits (57), Expect = 6.7
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 85 GDNGPYDAIHVGAA---YPRYPEIFIHHLKSGGRLVI 118
G YD I++ A Y E + L+ GG + +
Sbjct: 136 GQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAV 172
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane
protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos
taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 25.7 bits (57), Expect = 7.5
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 5 FVSGSVSGAVAKYVTY 20
F++G V+ A++K
Sbjct: 11 FLAGGVAAAISKTAVA 26
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 25.8 bits (57), Expect = 7.7
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 85 GDNGPYDAIHVGAA---YPRYPEIFIHHLKSGGRLVI 118
G+ G +D V A Y E + L+ GG L +
Sbjct: 141 GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAV 177
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 25.4 bits (56), Expect = 7.9
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 125 QQMLTIYDKFHNGTID 140
+ + +D+ +GT+D
Sbjct: 76 EGVCRKWDRNGSGTLD 91
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 25.7 bits (57), Expect = 8.0
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 87 NGPYDAIHVGAA---YPRYPEIFIHHLKSGGRLVI 118
+ YD I + AA ++ EI+ LK G ++
Sbjct: 140 DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVIT 174
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 25.7 bits (56), Expect = 9.6
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 78 ADGRASFGDNGPYDAI------HVG-AAYPRYPEIFI----HHLKSGGRLVI 118
+D + + +D I HVG A + F+ L+ GG +
Sbjct: 287 SDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function;
1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A
1j9k_A* 1j9l_A*
Length = 247
Score = 25.5 bits (57), Expect = 9.7
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 54 NVYYYLSGGPLSSTIDPDHDYDLIADGRAS 83
YY++ G + D DY + +G S
Sbjct: 196 EKYYWMMGEVIEDDDRDDVDYKAVREGYVS 225
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase,
structural genomics, 3-D structure, mixed alpha/beta
protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB:
2wqk_A
Length = 251
Score = 25.5 bits (57), Expect = 9.8
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 54 NVYYYLSGGPLSSTIDPDHDYDLIADGRAS 83
+Y+++ + DY + +G S
Sbjct: 198 KPFYWIAAEEFGWHAEEGTDYWAVLNGYVS 227
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.428
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,699,092
Number of extensions: 161161
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 46
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)