RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8015
(165 letters)
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 223
Score = 54.5 bits (130), Expect = 4e-10
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 79 DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIG-DTKQQMLTIYDKFHNG 137
DGR + N PY+AIHVGAA P P I+ L SGGRL++P+G D Q + YDK NG
Sbjct: 149 DGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANG 208
Query: 138 TIDIQHWGVV 147
+++ V
Sbjct: 209 KVEMTRLMGV 218
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 51.8 bits (123), Expect = 3e-09
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 71 DHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD-TKQQMLT 129
++ DGR + + PYDAIHVGAA P P+ I LK GGRL++P+G QML
Sbjct: 132 GRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLE 191
Query: 130 IYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS 160
YDK +G+I ++ V L D + +S
Sbjct: 192 QYDKLQDGSIKMKPLMGVIYVPLTDKEKQWS 222
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 50.2 bits (119), Expect = 9e-09
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 78 ADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKFHN 136
DG F PYD I V A P+ PE I LK GG+L+IP+G Q L K +
Sbjct: 134 GDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKD 193
Query: 137 GTIDIQHWGVVQVGLL 152
G H GV V L+
Sbjct: 194 GIKIKNHGGVAFVPLI 209
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 47.1 bits (111), Expect = 2e-07
Identities = 20/81 (24%), Positives = 32/81 (39%)
Query: 72 HDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIY 131
+ ++ DG + + PYD + V A P LK GG +++PIG + Q L
Sbjct: 117 NIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKV 176
Query: 132 DKFHNGTIDIQHWGVVQVGLL 152
K N V+ +
Sbjct: 177 IKKGNSPSLENLGEVMFGRIG 197
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 45.0 bits (105), Expect = 7e-07
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 70 PDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD--TKQQM 127
++ + DG + PYD I V PE + LK GGR+++PI +++Q
Sbjct: 125 IENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQP 184
Query: 128 LTIYDKFHNGTIDIQHWGVVQVGL 151
++ K + +
Sbjct: 185 AFLFKKKDPYLVGNYKLETRFITA 208
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 27.3 bits (60), Expect = 0.79
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 69 DPDHDYDLIADGRASFGDNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGDTKQQM 127
PD+ +++D S +G D + P + L +GG L++ + Q
Sbjct: 148 PPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLS 207
Query: 128 LTIYD-KFHNGTIDIQHWGVVQ 148
+ + + + W +Q
Sbjct: 208 RIVEALRAKQCWTEPRAWETLQ 229
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId:
9606]}
Length = 165
Score = 26.5 bits (58), Expect = 1.2
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 122 DTKQQMLTIYDKFHNGTIDIQHW 144
+T + M+ + D+ H G + +
Sbjct: 40 ETCRIMIAMLDRDHTGKMGFNAF 62
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 77
Score = 25.3 bits (55), Expect = 1.6
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 125 QQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYSMPII 164
++ ++DK +NG+I V L ++
Sbjct: 13 KEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLM 52
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK
{Thermotoga maritima [TaxId: 2336]}
Length = 271
Score = 26.0 bits (56), Expect = 2.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 102 YPEIFIHHLKSGGRLVIPIGD 122
Y E F + SG +++ IG+
Sbjct: 218 YREFFGRYDTSGKIVLMEIGE 238
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 25.8 bits (55), Expect = 2.6
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 5 FVSGSVSGAVAKYVTY 20
F++G V+ A++K
Sbjct: 10 FLAGGVAAAISKTAVA 25
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 25.7 bits (55), Expect = 3.0
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 83 SFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVI 118
A + + E+ LK GG ++I
Sbjct: 100 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLI 135
>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 355
Score = 25.7 bits (55), Expect = 3.3
Identities = 14/87 (16%), Positives = 27/87 (31%)
Query: 63 PLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD 122
P + + D ++ G A +V Y R PE+ + + +G
Sbjct: 147 PSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGC 206
Query: 123 TKQQMLTIYDKFHNGTIDIQHWGVVQV 149
+M+ F Q V++
Sbjct: 207 IMGEMVRHKILFPGRDYIDQWNKVIEQ 233
>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal
domain (domain IV) {Rat (Rattus norvegicus), M-type
[TaxId: 10116]}
Length = 186
Score = 25.1 bits (54), Expect = 4.6
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 122 DTKQQMLTIYDKFHNGTIDIQHW 144
+T + M+ + D+ +G + ++ +
Sbjct: 61 ETCKIMVDMLDEDGSGKLGLKEF 83
>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 24.7 bits (53), Expect = 5.9
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 122 DTKQQMLTIYDKFHNGTIDIQHW 144
+T + M+++ D+ +GT+ +
Sbjct: 47 ETCRLMVSMLDRDMSGTMGFNEF 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.428
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 657,451
Number of extensions: 29967
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 18
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)