Query psy8018
Match_columns 280
No_of_seqs 335 out of 1356
Neff 6.6
Searched_HMMs 29240
Date Sat Aug 17 00:43:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 100.0 1E-34 3.5E-39 242.9 11.6 135 137-274 12-146 (148)
2 2i1a_A DNA damage-inducible pr 100.0 3.4E-34 1.2E-38 238.1 10.6 145 124-274 1-145 (148)
3 3phx_B Ubiquitin-like protein 99.8 3.1E-19 1.1E-23 132.4 10.5 72 1-73 5-76 (79)
4 3plu_A Ubiquitin-like modifier 99.8 2.3E-19 7.8E-24 138.0 9.6 70 1-71 22-91 (93)
5 4fbj_B NEDD8; effector-HOST ta 99.8 3.5E-19 1.2E-23 135.5 9.9 72 1-73 1-72 (88)
6 2kk8_A Uncharacterized protein 99.8 4.4E-19 1.5E-23 134.2 9.2 72 1-73 11-83 (84)
7 1uel_A HHR23B, UV excision rep 99.8 2.8E-18 9.7E-23 132.3 11.8 76 1-77 1-79 (95)
8 1ndd_A NEDD8, protein (ubiquit 99.8 2.8E-18 9.7E-23 125.3 10.8 72 1-73 1-72 (76)
9 4dwf_A HLA-B-associated transc 99.8 1.8E-18 6.1E-23 131.5 9.9 72 1-74 6-77 (90)
10 1uh6_A Ubiquitin-like 5; beta- 99.8 8.5E-19 2.9E-23 136.9 7.9 71 1-72 29-99 (100)
11 4a20_A Ubiquitin-like protein 99.8 1.7E-18 5.8E-23 134.9 9.2 74 1-75 20-97 (98)
12 2uyz_B Small ubiquitin-related 99.8 1.9E-18 6.6E-23 128.1 8.9 72 1-73 4-75 (79)
13 3v6c_B Ubiquitin; structural g 99.8 2.5E-18 8.4E-23 131.3 9.7 72 1-73 18-89 (91)
14 3a9j_A Ubiquitin; protein comp 99.8 5.3E-18 1.8E-22 123.8 11.0 72 1-73 1-72 (76)
15 2faz_A Ubiquitin-like containi 99.8 3.4E-18 1.1E-22 126.4 9.6 72 1-73 3-76 (78)
16 2wyq_A HHR23A, UV excision rep 99.8 4.7E-18 1.6E-22 127.4 10.5 72 1-73 6-80 (85)
17 2lxa_A Ubiquitin-like protein 99.8 1E-18 3.5E-23 133.3 6.7 72 1-73 2-77 (87)
18 3m62_B UV excision repair prot 99.7 2E-18 6.7E-23 136.0 8.2 72 1-73 2-73 (106)
19 4eew_A Large proline-rich prot 99.7 4E-18 1.4E-22 129.0 9.6 71 1-73 18-88 (88)
20 3n3k_B Ubiquitin; hydrolase, p 99.7 4.6E-18 1.6E-22 127.2 9.5 72 1-73 4-75 (85)
21 2kan_A Uncharacterized protein 99.7 5.7E-18 1.9E-22 130.7 10.2 74 1-75 16-89 (94)
22 2bwf_A Ubiquitin-like protein 99.7 7.9E-18 2.7E-22 123.7 10.3 71 1-73 5-75 (77)
23 1sif_A Ubiquitin; hydrophobic 99.7 6.2E-18 2.1E-22 128.6 9.9 72 1-73 10-81 (88)
24 3dbh_I NEDD8; cell cycle, acti 99.7 3.8E-18 1.3E-22 128.6 8.6 72 1-73 13-84 (88)
25 1v2y_A 3300001G02RIK protein; 99.7 1.2E-18 4.2E-23 137.3 6.1 73 1-73 8-95 (105)
26 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 9.3E-18 3.2E-22 128.9 10.7 72 1-73 2-73 (96)
27 2hj8_A Interferon-induced 17 k 99.7 2.7E-18 9.3E-23 130.5 7.6 72 1-73 5-76 (88)
28 3mtn_B UBA80, ubcep1, ubiquiti 99.7 8.9E-18 3E-22 125.5 9.7 72 1-73 4-75 (85)
29 4hcn_B Polyubiquitin, ubiquiti 99.7 9.2E-18 3.1E-22 130.1 9.6 72 1-73 23-94 (98)
30 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.1E-17 3.8E-22 126.1 9.7 72 1-73 8-79 (87)
31 1wyw_B Ubiquitin-like protein 99.7 8.6E-18 2.9E-22 130.2 9.4 72 1-73 22-93 (97)
32 2dzi_A Ubiquitin-like protein 99.7 9.3E-18 3.2E-22 124.4 8.8 72 1-73 8-79 (81)
33 1wy8_A NP95-like ring finger p 99.7 2E-17 6.9E-22 125.2 10.6 72 1-73 8-81 (89)
34 1yx5_B Ubiquitin; proteasome, 99.7 2.4E-17 8.3E-22 127.4 11.1 72 1-73 1-72 (98)
35 1v5o_A 1700011N24RIK protein; 99.7 8.5E-18 2.9E-22 131.4 8.5 73 1-73 8-84 (102)
36 1ttn_A DC-UBP, dendritic cell- 99.7 1.8E-17 6.1E-22 130.4 8.8 73 1-74 24-96 (106)
37 1yqb_A Ubiquilin 3; structural 99.7 3.4E-17 1.2E-21 127.7 9.6 74 1-76 23-96 (100)
38 2klc_A Ubiquilin-1; ubiquitin- 99.7 6.1E-17 2.1E-21 126.4 10.9 72 1-74 26-97 (101)
39 3b1l_X E3 ubiquitin-protein li 99.5 7.5E-19 2.6E-23 129.1 0.0 72 1-73 1-72 (76)
40 3vdz_A Ubiquitin-40S ribosomal 99.7 6E-17 2.1E-21 128.5 10.2 72 1-73 36-107 (111)
41 2l7r_A Ubiquitin-like protein 99.7 4.8E-17 1.7E-21 125.0 8.8 70 1-73 20-89 (93)
42 1wgd_A Homocysteine-responsive 99.7 5.6E-17 1.9E-21 124.3 9.1 72 1-73 8-85 (93)
43 1wju_A NEDD8 ultimate buster-1 99.7 3.8E-17 1.3E-21 127.5 8.1 69 3-72 18-90 (100)
44 2daf_A FLJ35834 protein; hypot 99.7 6.7E-17 2.3E-21 128.9 8.8 71 3-74 18-89 (118)
45 1wx8_A Riken cDNA 4931431F19; 99.7 4.2E-17 1.4E-21 125.5 6.8 72 1-74 18-89 (96)
46 1j8c_A Ubiquitin-like protein 99.7 1.5E-16 5.1E-21 129.0 10.3 72 1-74 33-104 (125)
47 1wxv_A BAG-family molecular ch 99.7 1.5E-16 5E-21 121.6 9.4 72 1-73 8-84 (92)
48 3l0w_B Monoubiquitinated proli 99.7 1.9E-16 6.5E-21 134.7 11.0 72 1-73 1-72 (169)
49 2ojr_A Ubiquitin; lanthide-bin 99.7 2.9E-16 1E-20 124.4 10.4 72 1-73 36-107 (111)
50 3rt3_B Ubiquitin-like protein 99.7 2.6E-16 8.9E-21 131.4 10.5 72 1-73 82-153 (159)
51 2fnj_B Transcription elongatio 99.7 1.3E-16 4.4E-21 128.0 8.1 72 1-73 1-80 (118)
52 2kdi_A Ubiquitin, vacuolar pro 99.7 3.9E-16 1.3E-20 124.5 10.8 72 1-73 10-81 (114)
53 2kdb_A Homocysteine-responsive 99.7 1E-16 3.5E-21 125.0 7.1 70 1-71 24-99 (99)
54 4dbg_A Ranbp-type and C3HC4-ty 99.7 3.8E-16 1.3E-20 122.8 10.4 72 1-73 25-99 (105)
55 1wx7_A Ubiquilin 3; ubiquitin- 99.7 2.6E-16 9E-21 123.5 9.5 71 1-73 18-88 (106)
56 3rt3_B Ubiquitin-like protein 99.7 3.7E-16 1.3E-20 130.5 10.9 76 1-77 3-80 (159)
57 1v5t_A 8430435I17RIK protein; 99.7 1.7E-16 5.9E-21 121.2 8.1 71 1-73 8-82 (90)
58 1wgh_A Ubiquitin-like 3, HCG-1 99.7 3.7E-16 1.3E-20 125.2 10.2 72 1-73 17-98 (116)
59 2gow_A HCG-1 protein, ubiquiti 99.7 2.1E-16 7.3E-21 128.2 8.7 72 1-73 18-99 (125)
60 1x1m_A Ubiquitin-like protein 99.6 4.2E-16 1.5E-20 122.7 9.1 75 1-76 13-102 (107)
61 4ajy_B Transcription elongatio 99.6 4.2E-16 1.4E-20 124.8 8.5 72 1-73 1-80 (118)
62 3m63_B Ubiquitin domain-contai 99.6 1E-16 3.6E-21 125.2 4.9 71 1-73 29-99 (101)
63 1we6_A Splicing factor, putati 99.6 2.8E-16 9.6E-21 124.4 7.5 72 1-73 28-103 (111)
64 1wia_A Hypothetical ubiquitin- 99.6 4.8E-16 1.6E-20 119.4 8.3 70 1-73 8-77 (95)
65 3q3f_A Ribonuclease/ubiquitin 99.6 4.1E-16 1.4E-20 134.9 8.6 72 1-73 106-177 (189)
66 3u5e_m 60S ribosomal protein L 99.6 1.8E-17 6.3E-22 134.6 0.0 76 1-78 1-76 (128)
67 3u30_A Ubiquitin, linear DI-ub 99.6 9.6E-16 3.3E-20 129.9 10.3 72 1-73 21-92 (172)
68 3b08_A Polyubiquitin-C, ubiqui 99.6 1.5E-15 5.2E-20 124.9 11.1 72 1-73 1-72 (152)
69 2kd0_A LRR repeats and ubiquit 99.6 1.1E-15 3.8E-20 115.5 9.3 70 3-73 14-83 (85)
70 1se9_A Ubiquitin family; ubiqu 99.6 8.7E-16 3E-20 124.5 9.0 72 1-73 17-102 (126)
71 1wgg_A Ubiquitin carboxyl-term 99.6 4.4E-16 1.5E-20 120.5 6.9 70 1-73 8-78 (96)
72 3b08_A Polyubiquitin-C, ubiqui 99.6 3.6E-15 1.2E-19 122.6 10.6 72 1-73 77-148 (152)
73 3u5c_f 40S ribosomal protein S 99.6 7.1E-17 2.4E-21 135.2 0.0 72 1-73 1-72 (152)
74 1v86_A DNA segment, CHR 7, way 99.6 6E-16 2.1E-20 119.4 5.2 70 1-73 18-87 (95)
75 1we7_A SF3A1 protein; structur 99.6 5.3E-15 1.8E-19 117.8 9.4 71 2-73 27-107 (115)
76 3u30_A Ubiquitin, linear DI-ub 99.6 3.6E-15 1.2E-19 126.3 8.6 72 1-73 97-168 (172)
77 2dzj_A Synaptic glycoprotein S 99.6 1.7E-15 5.9E-20 115.5 5.9 69 1-70 11-85 (88)
78 2kjr_A CG11242; UBL, ubiquitin 99.6 6.6E-15 2.3E-19 113.9 9.0 71 2-72 17-94 (95)
79 2kj6_A Tubulin folding cofacto 99.5 1.4E-14 4.9E-19 112.4 8.0 72 2-73 16-95 (97)
80 4b6w_A Tubulin-specific chaper 99.5 2.1E-14 7E-19 109.1 7.9 71 2-73 4-83 (86)
81 2dzm_A FAS-associated factor 1 99.5 1.1E-14 3.6E-19 113.8 6.3 71 1-73 9-81 (100)
82 3ai5_A Yeast enhanced green fl 99.5 3.2E-14 1.1E-18 131.3 9.8 72 1-73 234-305 (307)
83 1oqy_A HHR23A, UV excision rep 99.5 1.9E-14 6.6E-19 136.0 8.3 72 1-73 8-83 (368)
84 1wf9_A NPL4 family protein; be 99.5 1.5E-14 5.2E-19 113.9 5.9 72 1-73 8-94 (107)
85 1v6e_A Cytoskeleton-associated 99.5 7.4E-14 2.5E-18 107.5 7.5 72 2-73 9-87 (95)
86 2xzm_9 RPS31E; ribosome, trans 99.5 4.6E-15 1.6E-19 128.0 0.0 67 1-73 1-67 (189)
87 2kzr_A Ubiquitin thioesterase 99.4 9.5E-14 3.2E-18 104.9 6.0 72 1-73 1-77 (86)
88 2io1_B Small ubiquitin-related 99.4 7.2E-13 2.5E-17 102.2 9.3 76 1-77 8-83 (94)
89 1t0y_A Tubulin folding cofacto 99.4 4.5E-13 1.5E-17 107.9 8.4 72 2-73 8-86 (122)
90 2io0_B Small ubiquitin-related 99.4 3.4E-12 1.2E-16 97.8 10.0 77 1-78 6-82 (91)
91 1wm3_A Ubiquitin-like protein 99.3 4.2E-12 1.4E-16 92.9 9.5 70 1-71 2-71 (72)
92 3shq_A UBLCP1; phosphatase, hy 99.3 1.2E-12 4E-17 121.7 7.0 71 1-73 6-79 (320)
93 3slz_A GAG-Pro-POL polyprotein 99.3 9.1E-12 3.1E-16 101.6 8.7 111 147-269 20-131 (132)
94 3a4r_A Nfatc2-interacting prot 99.3 1.9E-11 6.5E-16 91.1 9.5 70 1-71 8-78 (79)
95 2d07_B Ubiquitin-like protein 99.3 1.8E-11 6.1E-16 94.1 9.5 73 1-74 18-90 (93)
96 1wjn_A Tubulin-folding protein 99.3 1.3E-11 4.5E-16 95.1 8.6 72 2-73 11-92 (97)
97 1wz0_A Ubiquitin-like protein 99.2 1.6E-11 5.4E-16 96.4 7.9 77 1-78 25-101 (104)
98 1fmb_A EIAV protease; hydrolas 99.2 3.2E-11 1.1E-15 94.6 8.7 97 148-250 7-104 (104)
99 2eke_C Ubiquitin-like protein 99.2 7.1E-11 2.4E-15 92.9 9.1 72 1-74 32-103 (106)
100 2k8h_A Small ubiquitin protein 99.2 2.3E-11 8E-16 96.3 5.8 75 1-76 27-101 (110)
101 3ec0_A Protease; HIV-2, inhibi 99.0 4.3E-09 1.5E-13 81.6 10.5 91 149-250 8-99 (99)
102 2hs1_A HIV-1 protease; ultra-h 98.9 1.3E-08 4.3E-13 79.0 11.6 92 149-250 8-99 (99)
103 3kyd_D Small ubiquitin-related 98.8 2E-08 6.7E-13 80.0 10.0 72 2-74 42-113 (115)
104 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.8 3.5E-08 1.2E-12 85.7 12.0 92 149-251 8-100 (203)
105 2hah_A Protease, retropepsin; 98.7 5.8E-08 2E-12 77.4 9.1 93 149-249 14-115 (116)
106 3pge_A SUMO-modified prolifera 98.7 9.1E-08 3.1E-12 83.1 9.9 75 2-78 31-105 (200)
107 2pjh_A Protein NPL4, nuclear p 98.6 1.4E-08 4.8E-13 75.7 3.4 71 1-72 5-79 (80)
108 3tix_A Ubiquitin-like protein 98.5 1.8E-07 6.1E-12 80.4 7.4 74 3-78 60-133 (207)
109 4efo_A Serine/threonine-protei 98.3 1E-06 3.6E-11 67.5 7.0 67 7-73 20-88 (94)
110 3v7o_A Minor nucleoprotein VP3 98.3 8.2E-08 2.8E-12 83.6 0.3 76 1-78 22-97 (227)
111 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.3 5E-06 1.7E-10 72.1 11.5 91 149-250 112-203 (203)
112 3sqf_A Protease; folded monome 98.2 1.3E-06 4.3E-11 69.3 4.4 101 149-255 9-112 (114)
113 3goe_A DNA repair protein RAD6 98.1 1.8E-05 6.2E-10 58.3 9.5 66 5-71 14-80 (82)
114 2jxx_A Nfatc2-interacting prot 98.1 1.2E-05 4.1E-10 62.0 8.8 68 3-71 28-96 (97)
115 2kc2_A Talin-1, F1; FERM, adhe 98.0 1.1E-05 3.7E-10 65.2 6.3 70 3-73 14-122 (128)
116 2rsp_A RSV protease; hydrolase 98.0 6.2E-06 2.1E-10 66.3 4.4 88 156-249 27-122 (124)
117 3uf8_A Ubiquitin-like protein 97.9 3.7E-05 1.3E-09 66.9 9.1 74 3-78 24-97 (209)
118 2bps_A YUKD protein; ubiquitin 97.8 6.7E-05 2.3E-09 55.9 6.8 67 3-70 7-80 (81)
119 3ix6_A TS, tsase, thymidylate 97.7 5E-06 1.7E-10 77.9 0.0 73 3-77 24-96 (360)
120 2al3_A TUG long isoform; TUG U 97.6 0.00028 9.4E-09 53.5 8.4 72 1-73 10-81 (90)
121 2l76_A Nfatc2-interacting prot 97.5 0.0006 2.1E-08 52.1 9.2 69 2-72 23-91 (95)
122 3qx1_A FAS-associated factor 1 97.5 0.00044 1.5E-08 51.3 8.3 71 2-73 9-83 (84)
123 4da1_A Protein phosphatase 1K, 97.4 1.9E-05 6.4E-10 74.6 0.0 69 4-74 34-102 (389)
124 3liy_A Protease; hydrolase, hy 97.3 0.00034 1.2E-08 55.2 5.1 97 149-250 10-115 (116)
125 2dzk_A UBX domain-containing p 97.2 0.002 7E-08 50.2 9.1 72 2-73 15-90 (109)
126 2pma_A Uncharacterized protein 96.8 0.00093 3.2E-08 55.0 4.2 96 158-254 17-141 (146)
127 1wj4_A KIAA0794 protein; UBX d 96.8 0.0052 1.8E-07 49.0 8.2 71 2-73 45-119 (124)
128 2l32_A Small archaeal modifier 96.5 0.0073 2.5E-07 43.8 6.6 61 1-72 1-61 (74)
129 2cr5_A Reproduction 8; UBX dom 96.3 0.016 5.4E-07 45.0 8.1 71 2-73 25-98 (109)
130 1s3s_G P47 protein; AAA ATPase 95.9 0.017 5.8E-07 46.2 6.5 66 2-67 54-122 (127)
131 3qvc_A Histo-aspartic protease 95.7 0.11 3.9E-06 49.7 12.8 92 147-240 136-251 (451)
132 2x0b_A Renin; hydrolase-hormon 95.4 0.062 2.1E-06 50.3 9.5 92 147-240 60-175 (383)
133 1ryj_A Unknown; beta/alpha pro 95.1 0.17 5.9E-06 35.8 8.8 61 1-72 5-65 (70)
134 2kl0_A Putative thiamin biosyn 94.9 0.056 1.9E-06 38.9 5.8 65 1-78 1-65 (73)
135 1miq_A Plasmepsin; aspartic pr 94.8 0.097 3.3E-06 48.7 8.8 92 147-240 61-176 (375)
136 4a3p_A Ubiquitin carboxyl-term 94.8 0.1 3.5E-06 45.2 8.4 63 11-73 140-208 (217)
137 3jyu_A Ubiquitin carboxyl-term 94.7 0.13 4.4E-06 45.0 8.9 62 12-73 153-220 (231)
138 2bju_A Plasmepsin II; aspartic 94.5 0.11 3.6E-06 50.0 8.5 91 148-240 138-252 (453)
139 2k5p_A THis protein, thiamine- 94.4 0.061 2.1E-06 39.3 5.2 66 1-78 1-69 (78)
140 1b5f_A Protein (cardosin A); h 94.3 0.19 6.6E-06 43.5 9.2 91 148-240 13-127 (239)
141 3cms_A Chymosin B; hydrolase, 94.3 0.17 5.9E-06 45.6 9.0 91 148-240 14-127 (323)
142 3ivf_A Talin-1; FERM domain, c 94.3 0.18 6.2E-06 46.6 9.3 68 4-73 7-84 (371)
143 4e71_A Plexin-B2, MM1; transme 94.2 0.23 7.9E-06 38.8 8.3 65 9-73 22-110 (111)
144 1yg9_A Aspartic protease BLA G 94.1 0.14 4.9E-06 46.4 8.2 91 148-240 17-128 (330)
145 1tyg_B YJBS; alpha beta barrel 94.1 0.12 4.2E-06 38.5 6.3 56 9-72 26-82 (87)
146 3k1w_A Renin; protease, altern 93.9 0.49 1.7E-05 42.7 11.3 91 148-240 18-132 (341)
147 1mpp_A Pepsin; hydrolase(acid 93.7 0.24 8.1E-06 45.4 8.8 91 148-240 18-137 (361)
148 1tzs_A Cathepsin E; hydrolase, 93.6 0.27 9.1E-06 45.0 9.0 92 147-240 22-136 (351)
149 1dpj_A Proteinase A; proteinas 93.5 0.28 9.6E-06 44.3 8.9 91 148-240 13-126 (329)
150 1wkr_A Polyporopepsin; hydrola 93.5 0.22 7.6E-06 45.2 8.2 87 148-240 12-109 (340)
151 1bxo_A Protein (penicillopepsi 93.3 0.41 1.4E-05 43.1 9.6 92 148-240 15-126 (323)
152 2daj_A KIAA0977 protein, COBL- 93.1 0.18 6.3E-06 37.5 5.6 62 2-64 12-76 (91)
153 1izd_A Aspartic proteinase; su 93.1 0.47 1.6E-05 42.8 9.7 93 147-240 14-126 (323)
154 1f0z_A THis protein; ubiquitin 93.1 0.21 7.4E-06 34.7 5.8 61 1-72 1-61 (66)
155 1htr_B Gastricsin; aspartyl pr 93.0 0.48 1.6E-05 42.7 9.7 92 147-240 11-125 (329)
156 4aa9_A Chymosin; hydrolase, as 92.8 0.69 2.3E-05 41.4 10.3 91 148-240 11-124 (320)
157 3psg_A Pepsinogen; hydrolase(a 92.7 0.53 1.8E-05 43.5 9.7 92 147-240 55-169 (370)
158 1ibq_A Aspergillopepsin; aspar 92.6 0.35 1.2E-05 43.7 8.2 92 148-240 14-125 (325)
159 3qvc_A Histo-aspartic protease 92.4 0.78 2.7E-05 43.8 10.6 103 154-261 322-449 (451)
160 1qdm_A Prophytepsin; aspartic 92.4 0.53 1.8E-05 45.3 9.5 92 147-240 51-166 (478)
161 2r2o_A Plexin-B1; effector dom 92.3 0.57 2E-05 37.9 8.1 64 11-74 41-129 (138)
162 2jys_A Protease/reverse transc 92.2 0.12 4E-06 39.2 3.5 63 152-223 10-74 (107)
163 3rpf_C Molybdopterin convertin 92.2 0.72 2.5E-05 32.6 7.7 64 1-72 1-69 (74)
164 3c9x_A Trichoderma reesei aspa 92.1 0.49 1.7E-05 42.7 8.5 90 148-240 15-130 (329)
165 1oew_A Endothiapepsin; hydrola 92.1 0.72 2.5E-05 41.6 9.5 91 148-240 15-129 (329)
166 3cms_A Chymosin B; hydrolase, 92.0 0.52 1.8E-05 42.4 8.5 102 153-260 197-322 (323)
167 3fv3_A SAPP1P-secreted asparti 92.0 0.33 1.1E-05 43.8 7.2 92 148-240 12-122 (339)
168 3pvk_A Candidapepsin-2; hydrol 91.9 0.38 1.3E-05 43.4 7.5 92 148-240 12-128 (342)
169 2apr_A Rhizopuspepsin; hydrola 91.9 0.65 2.2E-05 41.8 9.0 91 148-240 15-127 (325)
170 1am5_A Pepsin, acid proteinase 91.7 0.42 1.4E-05 43.0 7.5 91 148-240 12-125 (324)
171 4aa9_A Chymosin; hydrolase, as 91.7 0.57 1.9E-05 41.9 8.3 101 154-260 195-319 (320)
172 1lya_B Cathepsin D; lysosomal 91.5 0.7 2.4E-05 39.6 8.4 103 153-260 107-240 (241)
173 1yg9_A Aspartic protease BLA G 91.1 0.43 1.5E-05 43.2 6.9 102 154-260 202-328 (330)
174 1vjk_A Molybdopterin convertin 91.0 1.2 4E-05 33.3 8.3 66 1-72 10-93 (98)
175 1j71_A Candidapepsin, aspartic 91.0 0.43 1.5E-05 43.2 6.8 92 148-240 12-128 (334)
176 2qzx_A Candidapepsin-5; aspart 90.9 0.48 1.6E-05 43.0 7.0 92 148-240 12-128 (342)
177 3k1w_A Renin; protease, altern 90.4 1.1 3.9E-05 40.2 9.1 100 154-260 208-339 (341)
178 1lya_A Cathepsin D; lysosomal 90.3 1.2 4E-05 33.4 7.6 32 148-179 13-47 (97)
179 1oey_A P67-PHOX, neutrophil cy 90.0 0.55 1.9E-05 34.7 5.4 44 2-47 7-50 (83)
180 3h6n_A Plexin-D1; structural g 90.0 2.4 8.2E-05 33.7 9.4 65 9-73 15-104 (127)
181 1dpj_A Proteinase A; proteinas 89.8 1.4 4.6E-05 39.7 9.1 102 153-260 200-328 (329)
182 3lpj_A Beta-secretase 1; alzhe 89.8 0.81 2.8E-05 43.3 7.9 88 148-240 74-185 (455)
183 1j71_A Candidapepsin, aspartic 89.7 1.5 5.2E-05 39.5 9.4 103 153-263 201-326 (334)
184 3aup_A SBG7S, BG, basic 7S glo 89.6 0.82 2.8E-05 42.5 7.6 92 148-240 21-163 (403)
185 3fv3_A SAPP1P-secreted asparti 89.5 1.5 5.3E-05 39.3 9.2 106 154-263 204-331 (339)
186 1am5_A Pepsin, acid proteinase 89.5 0.61 2.1E-05 41.9 6.5 100 153-260 196-323 (324)
187 1tzs_A Cathepsin E; hydrolase, 89.4 1.2 3.9E-05 40.6 8.4 32 232-263 313-344 (351)
188 1miq_A Plasmepsin; aspartic pr 89.2 1.2 4.2E-05 41.0 8.5 100 154-260 247-373 (375)
189 1htr_B Gastricsin; aspartyl pr 89.0 0.69 2.4E-05 41.6 6.4 103 153-260 197-328 (329)
190 1mpp_A Pepsin; hydrolase(acid 88.9 1.8 6.1E-05 39.4 9.3 32 232-263 326-357 (361)
191 3vf3_A Beta-secretase 1; struc 88.2 1.1 3.7E-05 41.5 7.4 88 148-240 28-139 (402)
192 1y8x_B Ubiquitin-activating en 88.1 0.45 1.5E-05 36.3 3.8 64 12-75 6-86 (98)
193 1bxo_A Protein (penicillopepsi 88.1 3.7 0.00012 36.8 10.7 103 154-260 198-322 (323)
194 4e74_A Plexin-A4; RBD, structu 87.9 1.8 6.1E-05 34.0 7.3 65 10-74 26-115 (117)
195 1ibq_A Aspergillopepsin; aspar 87.4 1.7 5.9E-05 39.0 8.0 105 154-260 197-324 (325)
196 2bju_A Plasmepsin II; aspartic 87.4 1.7 5.8E-05 41.5 8.4 104 154-261 323-450 (453)
197 2qzx_A Candidapepsin-5; aspart 87.1 4.8 0.00017 36.1 10.9 106 153-263 201-333 (342)
198 4eut_A Serine/threonine-protei 86.8 1.7 6E-05 39.7 7.8 65 8-72 319-385 (396)
199 2ewy_A Beta-secretase 2; BACE2 86.6 3 0.0001 38.1 9.4 88 148-240 13-124 (383)
200 1izd_A Aspartic proteinase; su 86.6 1.3 4.6E-05 39.7 6.8 98 159-260 207-322 (323)
201 3s8i_A Protein DDI1 homolog 1; 86.4 0.63 2.2E-05 37.8 4.1 36 245-280 85-120 (148)
202 1wkr_A Polyporopepsin; hydrola 86.2 1.3 4.6E-05 39.9 6.6 109 152-263 193-335 (340)
203 2x0b_A Renin; hydrolase-hormon 85.8 1.9 6.5E-05 40.0 7.6 100 154-260 251-382 (383)
204 2juo_A GA-binding protein alph 85.5 3.2 0.00011 30.7 7.0 59 13-72 5-63 (89)
205 3qa8_A MGC80376 protein; kinas 85.4 0.97 3.3E-05 45.5 5.7 66 8-73 319-393 (676)
206 2kvr_A Ubiquitin carboxyl-term 84.9 1 3.5E-05 35.9 4.5 34 12-45 57-90 (130)
207 1oew_A Endothiapepsin; hydrola 84.8 6.2 0.00021 35.3 10.3 102 154-259 201-328 (329)
208 2apr_A Rhizopuspepsin; hydrola 84.6 1.6 5.4E-05 39.2 6.3 29 232-260 295-323 (325)
209 3dwg_C 9.5 kDa culture filtrat 84.4 3.9 0.00013 29.9 7.3 69 1-72 1-88 (93)
210 3psg_A Pepsinogen; hydrolase(a 84.1 1.8 6.3E-05 39.8 6.6 100 154-260 241-369 (370)
211 2cu3_A Unknown function protei 84.1 2.3 7.9E-05 29.1 5.6 55 9-72 5-59 (64)
212 2kmm_A Guanosine-3',5'-BIS(dip 84.0 2.5 8.7E-05 29.2 5.9 62 1-72 1-62 (73)
213 3pvk_A Candidapepsin-2; hydrol 83.8 8 0.00027 34.5 10.6 105 153-263 200-333 (342)
214 3kuz_A Plexin-C1; structural g 83.2 6.3 0.00021 31.2 8.3 63 11-73 39-126 (126)
215 1t6e_X Xylanase inhibitor; two 83.0 2.4 8.2E-05 39.0 6.9 30 233-262 345-374 (381)
216 2kmc_A Fermitin family homolog 83.0 13 0.00046 28.2 10.0 71 2-72 21-98 (102)
217 3c9x_A Trichoderma reesei aspa 82.7 2.8 9.6E-05 37.6 7.1 102 154-259 202-328 (329)
218 3aup_A SBG7S, BG, basic 7S glo 82.1 4.3 0.00015 37.5 8.3 29 233-261 358-387 (403)
219 2qjl_A URM1, ubiquitin-related 81.9 8.3 0.00028 28.6 8.4 68 1-72 2-94 (99)
220 2qp8_A Beta-secretase 1; BACE1 81.6 3.8 0.00013 37.7 7.7 88 148-240 21-132 (395)
221 3hm6_X Plexin-B1; structural g 81.2 6.4 0.00022 39.2 9.3 64 11-74 274-362 (644)
222 3ig3_A Plxna3 protein; plexin 80.7 8.9 0.0003 38.1 10.1 65 10-74 246-335 (627)
223 3po0_A Small archaeal modifier 80.7 11 0.00037 27.1 8.5 56 11-72 18-84 (89)
224 2ylm_A Ubiquitin carboxyl-term 78.6 3.9 0.00013 39.8 7.0 60 14-73 150-217 (530)
225 3onh_A Ubiquitin-activating en 78.5 5.4 0.00018 31.7 6.4 58 14-72 9-78 (127)
226 1wgk_A Riken cDNA 2900073H19 p 77.6 9.5 0.00033 29.4 7.6 66 1-72 12-103 (114)
227 3vf3_A Beta-secretase 1; struc 76.6 6.8 0.00023 36.0 7.8 32 232-263 345-376 (402)
228 3lpj_A Beta-secretase 1; alzhe 76.4 3.7 0.00013 38.7 6.0 33 232-264 391-423 (455)
229 3ivf_A Talin-1; FERM domain, c 76.2 11 0.00039 34.3 9.1 71 2-73 87-167 (371)
230 2hj1_A Hypothetical protein; s 74.4 5.9 0.0002 29.9 5.5 66 1-72 13-84 (97)
231 2inc_C TOUB protein; DIIRON, 4 74.1 21 0.00072 26.1 8.1 59 13-72 15-81 (83)
232 2ewy_A Beta-secretase 2; BACE2 74.0 3.2 0.00011 37.9 4.7 31 233-263 327-357 (383)
233 3u52_E Phenol hydroxylase comp 73.0 16 0.00054 28.6 7.7 60 12-71 39-107 (119)
234 2q5w_D Molybdopterin convertin 72.5 7.2 0.00025 27.2 5.3 55 11-72 16-72 (77)
235 3qij_A Protein 4.1; cytoskelet 71.5 21 0.00072 31.6 9.4 72 1-73 18-95 (296)
236 2l02_A Uncharacterized protein 71.4 2.1 7.2E-05 31.5 2.2 41 231-275 36-77 (82)
237 3ge3_C Toluene-4-monooxygenase 70.0 15 0.0005 27.0 6.5 59 13-72 17-82 (84)
238 1ef1_A Moesin; membrane, FERM 68.7 31 0.001 30.1 9.8 70 1-72 2-77 (294)
239 1vd2_A Protein kinase C, IOTA 68.5 19 0.00065 26.6 7.0 44 3-46 7-52 (89)
240 1fm0_D Molybdopterin convertin 68.0 13 0.00044 26.0 5.9 54 12-72 18-76 (81)
241 3vla_A EDGP; extracellular, in 67.2 7.4 0.00025 36.3 5.7 29 234-262 372-400 (413)
242 2l52_A Methanosarcina acetivor 67.1 17 0.00057 26.9 6.6 67 1-72 4-94 (99)
243 1h4r_A Merlin; FERM, neurofibr 66.8 35 0.0012 30.1 9.9 68 2-71 24-96 (314)
244 1wgr_A Growth factor receptor- 65.8 9.5 0.00032 28.9 5.0 70 4-73 13-92 (100)
245 3vla_A EDGP; extracellular, in 64.8 33 0.0011 31.8 9.7 27 148-174 20-48 (413)
246 3hvz_A Uncharacterized protein 62.9 21 0.0007 25.6 6.1 62 2-73 7-68 (78)
247 1rws_A Hypothetical protein PF 62.8 2.6 8.8E-05 30.0 1.2 49 14-72 24-72 (77)
248 2k9x_A Tburm1, uncharacterized 60.8 2.8 9.5E-05 32.3 1.1 66 1-72 5-97 (110)
249 2ylm_A Ubiquitin carboxyl-term 60.3 6.7 0.00023 38.2 4.0 34 12-45 37-70 (530)
250 2g1e_A Hypothetical protein TA 60.2 30 0.001 24.4 6.8 57 14-72 18-85 (90)
251 2zjd_A Microtubule-associated 60.1 11 0.00036 30.0 4.5 59 15-73 57-119 (130)
252 1b5f_A Protein (cardosin A); h 54.2 10 0.00035 32.4 3.8 29 154-182 197-232 (239)
253 2i1j_A Moesin; FERM, coiled-co 53.4 54 0.0019 32.1 9.3 70 2-73 6-81 (575)
254 1ip9_A BEM1 protein; ubiquitin 53.0 26 0.00089 25.8 5.2 43 2-47 14-57 (85)
255 2i1a_A DNA damage-inducible pr 52.8 13 0.00045 29.1 4.0 33 247-280 89-121 (148)
256 2ca5_A MXIH; transport protein 52.7 28 0.00095 25.6 5.3 32 103-134 33-64 (85)
257 4gdk_A Ubiquitin-like protein 52.0 28 0.00097 25.7 5.4 57 14-72 23-84 (91)
258 2r2q_A Gamma-aminobutyric acid 48.3 15 0.00052 28.0 3.5 57 15-71 48-107 (110)
259 4gmv_A RAS-associated and plec 46.1 29 0.001 30.9 5.5 69 4-72 35-113 (281)
260 1eo6_A GATE-16, golgi-associat 45.2 18 0.00062 28.0 3.5 59 15-73 49-110 (117)
261 2lgx_A Fermitin family homolog 43.4 15 0.0005 28.4 2.6 69 3-72 29-101 (112)
262 3m95_A Autophagy related prote 43.0 20 0.0007 28.2 3.5 58 15-73 57-118 (125)
263 1q1o_A Cell division control p 42.6 26 0.0009 26.4 4.0 29 10-38 22-50 (98)
264 3zqe_A Protein PRGI, cell inva 42.2 1.1E+02 0.0037 27.7 8.6 57 81-137 11-67 (305)
265 2i1s_A Hypothetical protein; m 40.2 1.5E+02 0.0052 24.2 9.9 31 12-42 23-53 (188)
266 1wgy_A RAP guanine nucleotide 39.8 1.2E+02 0.004 23.0 7.3 68 5-73 14-86 (104)
267 1rm6_C 4-hydroxybenzoyl-COA re 39.3 23 0.0008 28.8 3.5 29 1-29 1-30 (161)
268 3tca_A Amyloid beta A4 precurs 39.0 58 0.002 27.9 6.3 36 4-39 38-73 (291)
269 3rui_B Autophagy-related prote 38.4 33 0.0011 26.6 4.1 57 15-72 51-111 (118)
270 3hk0_A Growth factor receptor- 38.1 30 0.001 30.4 4.2 35 3-37 11-45 (256)
271 3au4_A Myosin-X; protein-prote 37.2 42 0.0014 32.3 5.5 44 2-45 218-263 (555)
272 3lay_A Zinc resistance-associa 36.5 1.8E+02 0.0061 23.9 8.9 24 101-124 99-122 (175)
273 1b5f_B Protein (cardosin A); h 36.4 26 0.00089 24.8 3.0 29 232-260 58-86 (87)
274 3h9d_A ATG8, microtubule-assoc 36.4 30 0.001 26.9 3.5 57 15-72 52-112 (119)
275 1j0g_A Hypothetical protein 18 36.2 1.2E+02 0.0042 22.0 7.1 62 12-73 25-86 (92)
276 4a6q_A Histone deacetylase com 35.7 34 0.0012 27.5 3.8 61 13-73 56-138 (143)
277 3hrd_D Nicotinate dehydrogenas 34.5 33 0.0011 28.0 3.7 26 1-27 4-29 (160)
278 2v1y_A Phosphatidylinositol-4, 34.3 60 0.0021 24.8 4.9 61 3-63 20-95 (108)
279 3lxf_A Ferredoxin; iron, iron- 33.6 45 0.0015 24.7 4.1 25 2-26 2-26 (104)
280 1v8c_A MOAD related protein; r 32.4 1.1E+02 0.0039 24.8 6.7 56 14-72 17-82 (168)
281 2nvu_B Maltose binding protein 32.3 76 0.0026 31.9 6.7 61 12-72 713-790 (805)
282 1n62_A Carbon monoxide dehydro 32.0 39 0.0013 27.7 3.7 26 2-28 5-30 (166)
283 3w1s_C Ubiquitin-like protein 31.4 1.1E+02 0.0039 22.4 5.9 58 14-73 26-85 (91)
284 3r8s_T 50S ribosomal protein L 30.0 70 0.0024 23.7 4.5 40 10-49 27-67 (93)
285 3pvl_A Myosin VIIA isoform 1; 29.3 63 0.0022 32.1 5.4 45 1-45 264-309 (655)
286 1ffv_A CUTS, iron-sulfur prote 27.9 50 0.0017 26.9 3.7 26 2-28 5-30 (163)
287 1t3q_A Quinoline 2-oxidoreduct 27.6 51 0.0018 26.8 3.7 27 1-28 10-36 (168)
288 1vq8_S 50S ribosomal protein L 27.1 69 0.0024 23.3 4.0 33 10-42 22-54 (85)
289 3tve_T 50S ribosomal protein L 26.6 1.4E+02 0.0049 21.9 5.7 40 10-49 21-61 (92)
290 2zjr_Q 50S ribosomal protein L 25.4 74 0.0025 23.6 3.9 37 12-48 24-61 (95)
291 1pqs_A Cell division control p 24.9 60 0.002 23.2 3.2 26 12-37 3-28 (77)
292 2bkf_A Zinc-finger protein NBR 22.0 2E+02 0.0069 21.0 5.6 35 3-37 7-44 (87)
293 3j21_T 50S ribosomal protein L 21.5 1.1E+02 0.0036 22.3 4.0 33 10-42 23-55 (86)
294 2dbs_A Hypothetical protein TT 21.0 2.4E+02 0.0081 20.3 5.7 42 108-165 36-78 (90)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=242.85 Aligned_cols=135 Identities=61% Similarity=0.978 Sum_probs=112.8
Q ss_pred HhhCCCcceeeeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEEC
Q psy8018 137 MEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIE 216 (280)
Q Consensus 137 ~e~~Pe~~~~~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG 216 (280)
--.-||+|+++.|+||+|+|||++++|||||||++|+||.+||+||||++..+.++.+.+.|+|+.++.|+++.++|+||
T Consensus 12 ~~~~~~~~~~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig 91 (148)
T 3s8i_A 12 SGLVPRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIE 91 (148)
T ss_dssp ----------CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEET
T ss_pred CCcCceeccccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEEC
Confidence 34569999999999999999999999999999999999999999999998888888889999999999999999999999
Q ss_pred CeEEEeEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecCCCccceeeccc
Q psy8018 217 NDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLD 274 (280)
Q Consensus 217 ~~~~~~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~~~~~~~~~~~~ 274 (280)
++.++|+|.|+++.++|+|||||||++++|+|||++++|+++.+. ++ .+|+-..|
T Consensus 92 ~~~~~~~~~Vle~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~~~-~~--~pfl~~~~ 146 (148)
T 3s8i_A 92 GDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTG-TQ--TYFLPEGE 146 (148)
T ss_dssp TEEEEEEEEEETTCSSSEEECHHHHHHTTCEEETTTTEEECTTTC-CE--EECCCGGG
T ss_pred CEEEEEEEEEeCCCCcCeeccHHHHHhCCEEEEcCCCEEEEccCC-eE--EeecCccc
Confidence 999999999999889999999999999999999999999998864 33 44555544
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=238.06 Aligned_cols=145 Identities=44% Similarity=0.757 Sum_probs=101.9
Q ss_pred HHhhhHHHHHHHhHhhCCCcceeeeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceee
Q psy8018 124 IKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQR 203 (280)
Q Consensus 124 i~q~~i~~~~~~a~e~~Pe~~~~~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~ 203 (280)
|||++|+|||+.|+|+.||.|.+..++|++|+|||++++|+|||||++|+||+++|+++||....+.++.+.+.|+|+..
T Consensus 1 ~~~~~i~~~~~~a~e~~p~~~~~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~ 80 (148)
T 2i1a_A 1 MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGK 80 (148)
T ss_dssp ----------------------CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC----------
T ss_pred CcHHHHHHHHHhhhhhCchhhcccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999998776777767788998877
Q ss_pred EEeEEEEEEEEECCeEEEeEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecCCCccceeeccc
Q psy8018 204 IIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLD 274 (280)
Q Consensus 204 ~~g~i~~~~i~IG~~~~~~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~~~~~~~~~~~~ 274 (280)
..|+++..+++||+..++++|.|++ .++|+|||+|||+++++.|||++++|++++ ..+.|+-..|
T Consensus 81 ~~~~~~~~~i~ig~~~~~~~~~vl~-~~~d~iLG~d~L~~~~~~ID~~~~~l~l~~-----~~~~f~~~~~ 145 (148)
T 2i1a_A 81 IIGRIHQAQVKIETQYIPCSFTVLD-TDIDVLIGLDMLKRHLACVDLKENVLRIAE-----VETSFLSEAE 145 (148)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEC-SSCSEEECHHHHHHTTCEEETTTTEEEETT-----EEEECCCTTT
T ss_pred cccEEEEEEEEECCEEeceeEEEec-CCCCeEecHHHHhhCCEEEECCCCEEEEcc-----EEEecCChhh
Confidence 7899999999999999999999999 578999999999999999999999999975 4445655544
No 3
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=132.42 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=69.6
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEe
Confidence 79999999999999999999999999999999999999999999999999975 8999999999999999875
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.79 E-value=2.3e-19 Score=138.01 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=67.8
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK 71 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~ 71 (280)
|+|+|++.+|++++++|+|++||.+||++|+++.|+|+++|+|+|+|++|+|+ .||++|||++|++|+|-
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~-~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDH-ISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCc-CCHHHcCCCCCCEEEEE
Confidence 68999999999999999999999999999999999999999999999999986 89999999999999985
No 5
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.79 E-value=3.5e-19 Score=135.49 Aligned_cols=72 Identities=26% Similarity=0.416 Sum_probs=69.9
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999875 8999999999999999986
No 6
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=4.4e-19 Score=134.18 Aligned_cols=72 Identities=22% Similarity=0.212 Sum_probs=69.4
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCee-eCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNA-LVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~-L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|++.+|+|+++|+|+|+|++ |+|+ +||++|||++|++|+|+.+
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~-~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILRED-LTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSS-SBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCc-CCHHHcCCCCCCEEEEEEc
Confidence 8999999999999999999999999999999999999999999999999 9875 9999999999999999874
No 7
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.8e-18 Score=132.25 Aligned_cols=76 Identities=21% Similarity=0.425 Sum_probs=71.2
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHH---hCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCC
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQ---SGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVAR 77 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e---~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~ 77 (280)
|+|+|++.+|+.++++|++++||++||++|+.. +|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.++.++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~g~~i~l~~~~~~~ 79 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDD-TALKEYKIDEKNFVVVMVTKPKA 79 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTT-SBGGGGTCCSSSEEEEEESSCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCc-CcHHHCCCCCCCEEEEEEeCCCC
Confidence 999999999999999999999999999999999 89999999999999999876 89999999999999999874433
No 8
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.77 E-value=2.8e-18 Score=125.29 Aligned_cols=72 Identities=26% Similarity=0.416 Sum_probs=69.6
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|++..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999875 8999999999999999885
No 9
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.76 E-value=1.8e-18 Score=131.48 Aligned_cols=72 Identities=25% Similarity=0.481 Sum_probs=69.3
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ 74 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~ 74 (280)
|+|+|++.+|+.++++|++++||.+||++|+.++|+|+++|+|+|+|+.|.|+ +||++||| +|++|+|+.+.
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~-~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTC-TTEEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCC-CCHHHcCC-CCcEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999875 89999999 89999999973
No 10
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=8.5e-19 Score=136.91 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=68.2
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
|+|+|++.+|+.++++|+|++||++||++|++.+|+|+++|+|+|.|++|+|+ .||++|||++|++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~-~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDH-VSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSS-CBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCC-CCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999876 999999999999999863
No 11
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.76 E-value=1.7e-18 Score=134.92 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=68.3
Q ss_pred CEEEEEcCCCcEEEE--EeCCCccHHHHHHHH-HHHhCCCCcceEEEECCeeeCCCcCCccccCC-CCCCEEEEEEecc
Q psy8018 1 MKVTVTSLDNECFLL--DVSEDLELENFKAFC-EVQSGISAQEIAIEFQGNALVDNKKTLKDYNI-QDGDLVLLKRVQV 75 (280)
Q Consensus 1 M~ItV~~~~g~~~~l--eV~~~~tV~~LK~~I-e~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI-~~gd~l~l~~~~~ 75 (280)
|+|+|++++|+.|++ +|+++.||++||++| ++..|+|+++|+|+|+|++|.|+ +||++||| ++|++|+|+.+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~-~tL~dy~I~~~g~ti~lmvskp 97 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDN-LFLSDLKVTPANSTITVMIKPN 97 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTT-CBGGGSCCBTTBCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCc-CCHHHcCcCCCCCEEEEEEeCC
Confidence 799999999998777 666999999999999 88899999999999999999986 89999999 9999999998643
No 12
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.76 E-value=1.9e-18 Score=128.11 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=69.6
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|+++.|+|+++|+|+|+|++|.|+ +||++|||++||+|+++.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~-~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCHHHHTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCC-CCHHHcCCCCCCEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999976 8999999999999999986
No 13
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.76 E-value=2.5e-18 Score=131.30 Aligned_cols=72 Identities=32% Similarity=0.440 Sum_probs=69.4
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.|
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-CBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCc-CcHHHCCCCCCCEEEEEEe
Confidence 89999999999999999999999999999999999999999999999999976 8999999999999999864
No 14
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.76 E-value=5.3e-18 Score=123.81 Aligned_cols=72 Identities=32% Similarity=0.445 Sum_probs=69.6
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||+.|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|++..+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCC-CcHHHcCCCCCCEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999875 8999999999999999986
No 15
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=3.4e-18 Score=126.37 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=68.6
Q ss_pred CEEEEEcCCCcEE-EEE-eCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECF-LLD-VSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~-~le-V~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.+ +++ |++++||++||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~-~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEe
Confidence 8999999999885 999 9999999999999999999999999999999999875 8999999999999999885
No 16
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.75 E-value=4.7e-18 Score=127.44 Aligned_cols=72 Identities=18% Similarity=0.403 Sum_probs=69.1
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHH---hCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQ---SGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e---~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|+.. +|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTT-SBGGGGCCCTTSEEEEEEC
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCC-CCHHHcCCCCCCEEEEEEc
Confidence 789999999999999999999999999999998 89999999999999999875 8999999999999999986
No 17
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1e-18 Score=133.33 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=67.9
Q ss_pred CEEEEEcCCCcEEEEEeC--CCccHHHHHHHH-HHHhCCCCcceEEEECCeeeCCCcCCccccCC-CCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVS--EDLELENFKAFC-EVQSGISAQEIAIEFQGNALVDNKKTLKDYNI-QDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~--~~~tV~~LK~~I-e~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI-~~gd~l~l~~~ 73 (280)
|+|+||+++|+.++++|+ +++||.+||++| ++..|+|+++|+|+|+||+|.|+ .||++||| ++|++|+|..+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~-~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDN-LFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTT-CBHHHHCCCGGGCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCc-CCHHHcCCCCCCCEEEEEcC
Confidence 899999999999988766 999999999999 99999999999999999999986 89999999 69999999885
No 18
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2e-18 Score=136.05 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=69.1
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDS-KTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTT-SBTTTTTCCTTCEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCc-CCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999999999999999999985 8999999999999999987
No 19
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=129.01 Aligned_cols=71 Identities=25% Similarity=0.489 Sum_probs=68.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|++++|+|+++|+|+|+|+.|.|+ .||++||| +|++|+|+.|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCC-CcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999999999999999999985 89999999 8999999864
No 20
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=4.6e-18 Score=127.21 Aligned_cols=72 Identities=31% Similarity=0.472 Sum_probs=69.8
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|++.+++|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTT-CBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCC-CCHHHCCCCCCCEEEEEEe
Confidence 89999999999999999999999999999999999999999999999999875 8999999999999999986
No 21
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=5.7e-18 Score=130.67 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=69.1
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEecc
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQV 75 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~ 75 (280)
|+|+|++++| .++++|++++||++||++|+..+|+|+++|+|+|+|++|.|+++||++|||++|++|+|+.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 7899999888 8999999999999999999999999999999999999998754899999999999999998733
No 22
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.74 E-value=7.9e-18 Score=123.65 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=67.9
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++ +|+.++++|+++.||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCC-CCHHHcCCCCCCEEEEEEc
Confidence 6899999 999999999999999999999999999999999999999999876 8999999999999999875
No 23
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=6.2e-18 Score=128.56 Aligned_cols=72 Identities=28% Similarity=0.452 Sum_probs=69.1
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBSGGGTCCTTCEEEEEC-
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEe
Confidence 89999999999999999999999999999999999999999999999999875 8999999999999999886
No 24
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.74 E-value=3.8e-18 Score=128.63 Aligned_cols=72 Identities=26% Similarity=0.407 Sum_probs=69.4
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-SBGGGGTCCTTCEEEECCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEe
Confidence 79999999999999999999999999999999999999999999999999975 8999999999999999875
No 25
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=1.2e-18 Score=137.31 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=69.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc---------------ceEEEECCeeeCCCcCCccccCCCCC
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ---------------EIAIEFQGNALVDNKKTLKDYNIQDG 65 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~---------------~Q~Li~~Gk~L~d~~~tL~~~gI~~g 65 (280)
|+|+|++++|+.++|+|++++||++||+.|++.+++|+. +|+|+|+|++|.||++||++|||++|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999884 57999999999866699999999999
Q ss_pred CEEEEEEe
Q psy8018 66 DLVLLKRV 73 (280)
Q Consensus 66 d~l~l~~~ 73 (280)
++|+++.+
T Consensus 88 ~~l~lv~~ 95 (105)
T 1v2y_A 88 DEVSFIKK 95 (105)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEeh
Confidence 99999986
No 26
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.74 E-value=9.3e-18 Score=128.88 Aligned_cols=72 Identities=32% Similarity=0.448 Sum_probs=70.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|++.+|+|++.|+|+|+|+.|.|+ .||++|||++|++|+|+.+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999876 8999999999999999986
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=130.48 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=69.5
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTT-SBHHHHHCSTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999875 8999999999999999986
No 28
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=8.9e-18 Score=125.51 Aligned_cols=72 Identities=32% Similarity=0.450 Sum_probs=69.8
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|++.+++|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999976 8999999999999999986
No 29
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=9.2e-18 Score=130.11 Aligned_cols=72 Identities=29% Similarity=0.441 Sum_probs=69.6
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-CBSGGGTCCTTEEEEEECB
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEe
Confidence 89999999999999999999999999999999999999999999999999875 8999999999999999875
No 30
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.1e-17 Score=126.08 Aligned_cols=72 Identities=28% Similarity=0.404 Sum_probs=69.6
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~-~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSS-SBHHHHTCCTTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCC-CCHHHCCCCCCCEEEEEEe
Confidence 79999999999999999999999999999999999999999999999999875 8999999999999999986
No 31
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.73 E-value=8.6e-18 Score=130.19 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=69.7
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|+.+.|+|+++|+|+|+|++|.|+ +||++|||++||+|+|+.+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~-~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCHHHHTCCTTCEEEEEES
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCC-CCHHHCCCCCCCEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999976 8999999999999999986
No 32
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.3e-18 Score=124.44 Aligned_cols=72 Identities=28% Similarity=0.391 Sum_probs=68.8
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|+++.||++||++|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADG-KRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTT-SBGGGGTCCSSBCCEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999875 8999999999999999874
No 33
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=2e-17 Score=125.24 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=68.8
Q ss_pred CEEEEEcCCC-cEEEE-EeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDN-ECFLL-DVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g-~~~~l-eV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+| +.+++ +|+++.||.+||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG-YTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSS-SBHHHHTCCTTCEEEEEEC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCC-CCHHHCCCCCCCEEEEEEe
Confidence 8999999999 79999 59999999999999999999999999999999999875 8999999999999999986
No 34
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.73 E-value=2.4e-17 Score=127.43 Aligned_cols=72 Identities=32% Similarity=0.448 Sum_probs=69.8
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|+++.||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999875 8999999999999999986
No 35
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=8.5e-18 Score=131.35 Aligned_cols=73 Identities=37% Similarity=0.671 Sum_probs=68.4
Q ss_pred CEEEEEcCCC----cEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDN----ECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g----~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.++ +.++++|++++||++||++|++++|+|+++|+|+|+|++|.|+.+||++|||++|++|+|+.+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7999998654 799999999999999999999999999999999999999988757999999999999999886
No 36
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.8e-17 Score=130.38 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=69.9
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ 74 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~ 74 (280)
|+|+|++.+|+.++++|+++.||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.++
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDK-MKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTT-SHHHHCCCSSSCEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999999999999999999875 89999999999999999863
No 37
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.4e-17 Score=127.67 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=68.9
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccC
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVA 76 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p 76 (280)
|+|+|++.+|+ ++++|++++||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+..+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHCCCCCCCEEEEEEcCCC
Confidence 78999998886 79999999999999999999999999999999999999875 8999999999999999987433
No 38
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=6.1e-17 Score=126.38 Aligned_cols=72 Identities=29% Similarity=0.318 Sum_probs=68.4
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ 74 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~ 74 (280)
|+|+|++. |+.++++|++++||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQ-DTLSQHGIHDGLTVHLVIKT 97 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTT-CCTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHcCCCCCCEEEEEEcC
Confidence 78999998 88999999999999999999999999999999999999999875 89999999999999999863
No 39
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.54 E-value=7.5e-19 Score=129.14 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=69.3
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNH-LTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 99999999999999999999999999999999999999999999999999875 8999999999999999875
No 40
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.70 E-value=6e-17 Score=128.51 Aligned_cols=72 Identities=32% Similarity=0.448 Sum_probs=69.7
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEe
Confidence 79999999999999999999999999999999999999999999999999976 8999999999999999986
No 41
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.69 E-value=4.8e-17 Score=124.99 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=67.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++ |+.++++|++++||++||++|++.+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDE-ATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTT-SBHHHHTCCSSCEEEEECC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEe
Confidence 8999998 89999999999999999999999999999999999999999875 8999999999999999875
No 42
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.6e-17 Score=124.31 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=67.6
Q ss_pred CEEEEEcCCCc--EEEEEeCCCccHHHHHHHHHHHh--CCCCcceEEEECCeeeCCCcCCcccc--CCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNE--CFLLDVSEDLELENFKAFCEVQS--GISAQEIAIEFQGNALVDNKKTLKDY--NIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~--~~~leV~~~~tV~~LK~~Ie~e~--gip~~~Q~Li~~Gk~L~d~~~tL~~~--gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|. .++++|++++||.+||++|++++ |+|+++|+|+|+|++|.|+ +||++| ||++|++|+|+.+
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~-~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDH-QCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSS-SCHHHHSCSSSCSEEEEEECC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCc-CCHHHHhcCCCCCCEEEEEeC
Confidence 79999999888 67788889999999999999998 9999999999999999976 899999 9999999999876
No 43
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=3.8e-17 Score=127.55 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=63.5
Q ss_pred EEEEcCC----CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 3 VTVTSLD----NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 3 ItV~~~~----g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
|.|+..+ ++.++++|++++||++||++|++++|+|+++|+|+|+||+|+|+ +||++|||++|++|+++.
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~-~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLG-KTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTT-SBHHHHTCCSSEEEEEEC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCC-CcHHHcCCCCCCEEEEEE
Confidence 5666666 78999999999999999999999999999999999999999986 999999999999996664
No 44
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.7e-17 Score=128.92 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=65.8
Q ss_pred EEEE-cCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018 3 VTVT-SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ 74 (280)
Q Consensus 3 ItV~-~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~ 74 (280)
|+|+ .++|+.++++++++.||.+||+.++.++++|+++|+|+|+||+|+|+ .||++|||++|.+|||+.+.
T Consensus 18 vkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~-eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 18 VKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNN-ETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSS-CCHHHHSCCSSCEEEEEEEE
T ss_pred EEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCc-chHHHcCCCCCCEEEEEEec
Confidence 3444 66799999999999999999999999999999999999999999986 89999999999999999983
No 45
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=4.2e-17 Score=125.52 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=68.5
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ 74 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~ 74 (280)
|+|+|++. |+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQ-DILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTT-SCHHHHTCCTTEEEECCBCC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCc-CCHHHCCCCCCCEEEEEEeC
Confidence 78999998 89999999999999999999999999999999999999999875 89999999999999998863
No 46
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.5e-16 Score=128.99 Aligned_cols=72 Identities=28% Similarity=0.315 Sum_probs=68.3
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ 74 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~ 74 (280)
|+|+|++. |+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQ-DTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTT-SCGGGTTCSSSEEEEEEEC-
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEecc
Confidence 78999998 89999999999999999999999999999999999999999875 89999999999999999873
No 47
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.5e-16 Score=121.62 Aligned_cols=72 Identities=28% Similarity=0.347 Sum_probs=67.3
Q ss_pred CEEEEEcCCCcEEEEEeCCC-----ccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSED-----LELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~-----~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|+. .|+.++++|+++ .||.+||++|+..+|+|+++|+|+|+|+.|.|++++|++|||++|++|+|+.+
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 6899998 588999999996 99999999999999999999999999999998657999999999999999876
No 48
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.68 E-value=1.9e-16 Score=134.65 Aligned_cols=72 Identities=29% Similarity=0.441 Sum_probs=70.1
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCc-CcHHHcCCCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999875 8999999999999999986
No 49
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=124.39 Aligned_cols=72 Identities=32% Similarity=0.448 Sum_probs=69.3
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|+++.||.+||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSS-CBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999875 8999999999999999986
No 50
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.67 E-value=2.6e-16 Score=131.40 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=69.7
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCC-CCHHHcCCCCCCEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999985 8999999999999999986
No 51
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.66 E-value=1.3e-16 Score=127.97 Aligned_cols=72 Identities=19% Similarity=0.111 Sum_probs=66.9
Q ss_pred CEEEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCC-------CCCEEEEEE
Q psy8018 1 MKVTVTSLDNE-CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQ-------DGDLVLLKR 72 (280)
Q Consensus 1 M~ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~-------~gd~l~l~~ 72 (280)
|+++|+...++ +++++|++++||++||++|+..+|||+++|+|+|+||+|.|+ +||++|||+ .+++|+|+.
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~-~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCC-CCHHHcCcccccccCCCCCEEEEEe
Confidence 78888877665 589999999999999999999999999999999999999876 999999999 799999998
Q ss_pred e
Q psy8018 73 V 73 (280)
Q Consensus 73 ~ 73 (280)
+
T Consensus 80 r 80 (118)
T 2fnj_B 80 R 80 (118)
T ss_dssp B
T ss_pred c
Confidence 7
No 52
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.9e-16 Score=124.49 Aligned_cols=72 Identities=25% Similarity=0.394 Sum_probs=69.2
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
.+|+|++++|+.++++|++++||++||++|++.+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDG-RTLSDYNIQRESTLHLVLR 81 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTTTTTCCSSCEEEEEEC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEE
Confidence 47999999999999999999999999999999999999999999999999875 8999999999999999986
No 53
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=125.02 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=63.7
Q ss_pred CEEEEEcCCCc--EEEEEeCCCccHHHHHHHHHHH-hCCC-CcceEEEECCeeeCCCcCCcccc--CCCCCCEEEEE
Q psy8018 1 MKVTVTSLDNE--CFLLDVSEDLELENFKAFCEVQ-SGIS-AQEIAIEFQGNALVDNKKTLKDY--NIQDGDLVLLK 71 (280)
Q Consensus 1 M~ItV~~~~g~--~~~leV~~~~tV~~LK~~Ie~e-~gip-~~~Q~Li~~Gk~L~d~~~tL~~~--gI~~gd~l~l~ 71 (280)
|+|+|++++|+ .++++|++++||.+||++|+++ .|+| +++|||+|+||+|+|+ +||++| ||++|++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~-~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDH-LQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTT-SBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCC-CCHHHHhcCCCCCCEEEeC
Confidence 78999999988 6799999999999999999996 4666 5999999999999976 899999 99999999984
No 54
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.66 E-value=3.8e-16 Score=122.85 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=66.5
Q ss_pred CEEEEEcCC--CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCC-CCCCEEEEEEe
Q psy8018 1 MKVTVTSLD--NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNI-QDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~--g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI-~~gd~l~l~~~ 73 (280)
|+|||++.. +..++++|+|++||.+||++|++++|||+++|||+|+|+.+.|+ +||++||| ++|++++|...
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~-~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQ-ETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTT-CBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCc-CcHHHcCCCCCCCEEEEEEE
Confidence 689999876 47899999999999999999999999999999999999988775 99999999 59999999875
No 55
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.6e-16 Score=123.53 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=67.6
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|+..+|+ +.++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTT-SCHHHHTCCTTEEEEEEEC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHcCCCCCCEEEEEEc
Confidence 78999998886 79999999999999999999999999999999999999875 8999999999999999987
No 56
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.66 E-value=3.7e-16 Score=130.47 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=71.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE-E-CCeeeCCCcCCccccCCCCCCEEEEEEeccCC
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE-F-QGNALVDNKKTLKDYNIQDGDLVLLKRVQVAR 77 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li-~-~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~ 77 (280)
|+|+|++.+|+.++++|++++||++||++|+..+|+|+++|+|+ | +|++|.|+ +||++|||++|++|+|+.+..|+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~-~tL~~y~i~~~~~l~l~~~~~~~ 80 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDR-VPLASQGLGPGSTVLLVVDKSDE 80 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTT-SCGGGGTCCTTCEEEEEECCCCC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCC-CCHHHcCCCCCCEEEEEccCCCC
Confidence 89999999999999999999999999999999999999999999 9 89999875 99999999999999999863343
No 57
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.66 E-value=1.7e-16 Score=121.16 Aligned_cols=71 Identities=13% Similarity=0.275 Sum_probs=67.4
Q ss_pred CEEEEEcCCCcEEEE-EeCCCccHHHHHHHHHHHhCCCCcceEEE---ECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLL-DVSEDLELENFKAFCEVQSGISAQEIAIE---FQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~l-eV~~~~tV~~LK~~Ie~e~gip~~~Q~Li---~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|+. .|+.+++ +|+++.||.+||++|++.+|+|+++|+|+ |+|++|.|+ .+|++|||++|++|+|+..
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~-~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND-VKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTT-SBHHHHTCCTTEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCC-CCHHHcCCCCCCEEEEEec
Confidence 7899996 7899999 99999999999999999999999999999 999999875 8999999999999999875
No 58
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=3.7e-16 Score=125.15 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=65.6
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHH------HhCC--CCcceEEEECCeeeCCCcCCccccCCCCCC--EEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEV------QSGI--SAQEIAIEFQGNALVDNKKTLKDYNIQDGD--LVLL 70 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~------e~gi--p~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd--~l~l 70 (280)
|+|+|++++|++++++|++++||++||++|++ .+|+ |+++|+|+|.||+|.|+ +||++|||+.++ +|||
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~-~TL~~y~I~~~~~~tlhL 95 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN-VTLGALKLPFGKTTVMHL 95 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSS-CBTTTTTCCSSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCC-CcHHHcCCCCCCceEEEE
Confidence 78999999999999999999999999999999 5575 69999999999999986 999999998774 6788
Q ss_pred EEe
Q psy8018 71 KRV 73 (280)
Q Consensus 71 ~~~ 73 (280)
+.+
T Consensus 96 vlr 98 (116)
T 1wgh_A 96 VAR 98 (116)
T ss_dssp EEC
T ss_pred Ecc
Confidence 876
No 59
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=128.15 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=66.1
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHH------HhCCC--CcceEEEECCeeeCCCcCCccccCCCCCC--EEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEV------QSGIS--AQEIAIEFQGNALVDNKKTLKDYNIQDGD--LVLL 70 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~------e~gip--~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd--~l~l 70 (280)
|+|+|++++|++++++|+|++||++||++|++ .+|+| +++|+|+|+||+|+|+ +||++|||++|+ +|+|
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~-~TL~~y~I~~~~~~tlhl 96 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN-VTLGALKLPFGKTTVMHL 96 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESS-CBTGGGCCCTTSEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCC-CcHHHcCCCCCCceEEEE
Confidence 68999999999999999999999999999998 67884 8999999999999976 899999999888 6788
Q ss_pred EEe
Q psy8018 71 KRV 73 (280)
Q Consensus 71 ~~~ 73 (280)
+.+
T Consensus 97 v~r 99 (125)
T 2gow_A 97 VAR 99 (125)
T ss_dssp EEC
T ss_pred Eec
Confidence 776
No 60
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=4.2e-16 Score=122.75 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=68.2
Q ss_pred CEEEEEcCCC---cEEEEEeCC---------CccHHHHHHHHHHHh--CCCCcc-eEEEECCeeeCCCcCCccccCCCCC
Q psy8018 1 MKVTVTSLDN---ECFLLDVSE---------DLELENFKAFCEVQS--GISAQE-IAIEFQGNALVDNKKTLKDYNIQDG 65 (280)
Q Consensus 1 M~ItV~~~~g---~~~~leV~~---------~~tV~~LK~~Ie~e~--gip~~~-Q~Li~~Gk~L~d~~~tL~~~gI~~g 65 (280)
|+|+|++.++ ..++++|++ ++||.+||++|+..+ |+|+++ |+|+|+|+.|.|+ +||++|||++|
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~-~tL~~y~i~~g 91 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDD-QTLDFYGIQPG 91 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTT-CBHHHHTCCTT
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCC-CcHHHcCCCCC
Confidence 7899999988 899999554 599999999999999 999999 9999999999876 89999999999
Q ss_pred CEEEEEEeccC
Q psy8018 66 DLVLLKRVQVA 76 (280)
Q Consensus 66 d~l~l~~~~~p 76 (280)
++|+|+.+..|
T Consensus 92 ~~i~lv~~~~~ 102 (107)
T 1x1m_A 92 STVHVLRKSWS 102 (107)
T ss_dssp CEEEEEESSCC
T ss_pred CEEEEEeCCCC
Confidence 99999987433
No 61
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.64 E-value=4.2e-16 Score=124.76 Aligned_cols=72 Identities=19% Similarity=0.111 Sum_probs=67.3
Q ss_pred CEEEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCC-------CCEEEEEE
Q psy8018 1 MKVTVTSLDNE-CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQD-------GDLVLLKR 72 (280)
Q Consensus 1 M~ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~-------gd~l~l~~ 72 (280)
|.++|+.-.++ ++.++|++++||.+||++|+..+|||+++|+|+|+|++|.|+ +||++|||++ +++|+|+.
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~-kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCc-CCHHHcCCCcCcccCCCCCEEEEEE
Confidence 78899876655 788999999999999999999999999999999999999875 9999999999 99999999
Q ss_pred e
Q psy8018 73 V 73 (280)
Q Consensus 73 ~ 73 (280)
|
T Consensus 80 r 80 (118)
T 4ajy_B 80 R 80 (118)
T ss_dssp C
T ss_pred e
Confidence 7
No 62
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1e-16 Score=125.17 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=66.3
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++ +|+.++++|++++||++||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTT-SBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCc-CcHHHCCCCCCCEEEEEeC
Confidence 4577887 899999999999999999999999999999999999999999975 8999999999999999864
No 63
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.64 E-value=2.8e-16 Score=124.42 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=68.5
Q ss_pred CEEEEEcC---CCcEEEEEeCC-CccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSL---DNECFLLDVSE-DLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~---~g~~~~leV~~-~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|+++ +|+.++++|++ ++||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~-~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDN-MSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTT-SBTTTTTCSSSCEEEEECS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCC-CcHHHCCCCCCCEEEEEEE
Confidence 68999988 89999999998 9999999999999999999999999999999875 8999999999999999875
No 64
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=4.8e-16 Score=119.42 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=66.4
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.+.++|++++||.+||++|+..+ +++|+|+|+|+.|.|+++||++|||++|++|+|+.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence 7899999999999999999999999999999987 899999999999987658999999999999999986
No 65
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.63 E-value=4.1e-16 Score=134.89 Aligned_cols=72 Identities=31% Similarity=0.412 Sum_probs=69.8
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|++.+|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.+
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~-~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-CBGGGGTCCTTCEEEECCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCC-CCHHHCCCCCCCEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999985 8999999999999999885
No 66
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.63 E-value=1.8e-17 Score=134.59 Aligned_cols=76 Identities=28% Similarity=0.414 Sum_probs=0.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART 78 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~ 78 (280)
|+|+|++.+|+.++++|++++||++||+.|++.+|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.+ .+|.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~~I~~gsti~l~~r-l~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR-LRGG 76 (128)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCC-CchhhhccCCCCEEEEEEE-cCCC
Confidence 89999999999999999999999999999999999999999999999999875 8999999999999999986 4444
No 67
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.63 E-value=9.6e-16 Score=129.85 Aligned_cols=72 Identities=32% Similarity=0.448 Sum_probs=69.7
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ .||++|||++|++|+|+.+
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~-~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccccc-CCHhHcCCcccceeeeeec
Confidence 89999999999999999999999999999999999999999999999999875 8999999999999999985
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.63 E-value=1.5e-15 Score=124.88 Aligned_cols=72 Identities=32% Similarity=0.448 Sum_probs=69.6
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||++||+.|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCc-ccHHHhccCCCCeeEEEee
Confidence 99999999999999999999999999999999999999999999999999875 8999999999999999986
No 69
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.63 E-value=1.1e-15 Score=115.53 Aligned_cols=70 Identities=20% Similarity=0.332 Sum_probs=64.5
Q ss_pred EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
+++++.+|+.++++|++++||++||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVET-STLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTT-CBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCc-CCHHHCCCCCCCEEEEEEe
Confidence 345567899999999999999999999999999999999999999999875 8999999999999999763
No 70
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=8.7e-16 Score=124.47 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=65.2
Q ss_pred CEEEEEcCCCcEE-EEEeCCCccHHHHHHHH-----HHHhCCCC--cceEEEECCeeeCCCcCCccccCCCCC------C
Q psy8018 1 MKVTVTSLDNECF-LLDVSEDLELENFKAFC-----EVQSGISA--QEIAIEFQGNALVDNKKTLKDYNIQDG------D 66 (280)
Q Consensus 1 M~ItV~~~~g~~~-~leV~~~~tV~~LK~~I-----e~e~gip~--~~Q~Li~~Gk~L~d~~~tL~~~gI~~g------d 66 (280)
|+|+|++++|+.+ +++++|++||++||++| ++..|+|+ ++|+|+|+||+|.|+ +||++|+|++| .
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~-~TLsdy~I~~~~~~~~v~ 95 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENS-KTVKDYRSPVSNLAGAVT 95 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTT-SBGGGGSCCTTSCTTCCE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCC-CcHHHcCCCcCCccCCcE
Confidence 7899999999888 79999999999999999 45668986 899999999999986 99999999999 5
Q ss_pred EEEEEEe
Q psy8018 67 LVLLKRV 73 (280)
Q Consensus 67 ~l~l~~~ 73 (280)
+++|+.+
T Consensus 96 tmhlVlr 102 (126)
T 1se9_A 96 TMHVIIQ 102 (126)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7888885
No 71
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=4.4e-16 Score=120.50 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=65.7
Q ss_pred CEEEEEcCCCcEE-EEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECF-LLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~-~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|+. .|+.+ +++|+++.||.+||++|++.+|+|+++|+|+|+|++|.|+ +|++|||++|++|+|+.+
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~--tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS--CCCSCCCCSSCEEECCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC--CHHHCCCCCCCEEEEEec
Confidence 6899995 78999 6999999999999999999999999999999999999874 999999999999999875
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.60 E-value=3.6e-15 Score=122.59 Aligned_cols=72 Identities=32% Similarity=0.448 Sum_probs=69.2
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|+++.||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEe
Confidence 68999999999999999999999999999999999999999999999999875 8999999999999999986
No 73
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.60 E-value=7.1e-17 Score=135.18 Aligned_cols=72 Identities=29% Similarity=0.441 Sum_probs=0.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++++|+.++++|++++||++||++|++.+|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcccc-CcHHHcCCCCCCEEEEEee
Confidence 89999999999999999999999999999999999999999999999999875 8999999999999999986
No 74
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=6e-16 Score=119.42 Aligned_cols=70 Identities=13% Similarity=0.230 Sum_probs=64.9
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|+. +|+.++++|+++.||.+||++|+..+|+|+++|+|+|+|++| |+ .+|++|||++|++|+|+.+
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-ED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SS-SBHHHHCCCTTEEEEECCS
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-Cc-CcHHHCCCCCCCEEEEEec
Confidence 5788884 688999999999999999999999999999999999999999 55 5999999999999999875
No 75
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.58 E-value=5.3e-15 Score=117.84 Aligned_cols=71 Identities=15% Similarity=0.302 Sum_probs=65.5
Q ss_pred EEEEEcC----------CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018 2 KVTVTSL----------DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK 71 (280)
Q Consensus 2 ~ItV~~~----------~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~ 71 (280)
+|+|+.+ +|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+
T Consensus 27 ~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~-~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 27 SIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS-NSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTT-SBHHHHTCCSSCEEEEE
T ss_pred EEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCC-CCHHHCCCCCCCEEEEE
Confidence 5667754 478999999999999999999999999999999999999999875 89999999999999999
Q ss_pred Ee
Q psy8018 72 RV 73 (280)
Q Consensus 72 ~~ 73 (280)
.+
T Consensus 106 ~r 107 (115)
T 1we7_A 106 LK 107 (115)
T ss_dssp EC
T ss_pred EE
Confidence 86
No 76
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=126.27 Aligned_cols=72 Identities=32% Similarity=0.448 Sum_probs=68.3
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-SBSGGGTCCTTCEEEECC-
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCC-CcHHHhCCCCCCEEEEEEe
Confidence 67899999999999999999999999999999999999999999999999875 8999999999999999875
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=115.50 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=63.0
Q ss_pred CEEEEEcCCCcEE--EE-EeCCCccHHHHHHHHHHH-hCCCCcceEEEEC--CeeeCCCcCCccccCCCCCCEEEE
Q psy8018 1 MKVTVTSLDNECF--LL-DVSEDLELENFKAFCEVQ-SGISAQEIAIEFQ--GNALVDNKKTLKDYNIQDGDLVLL 70 (280)
Q Consensus 1 M~ItV~~~~g~~~--~l-eV~~~~tV~~LK~~Ie~e-~gip~~~Q~Li~~--Gk~L~d~~~tL~~~gI~~gd~l~l 70 (280)
|+|+|++..|+.+ ++ +|+|+.||++||++|++. .|+||++|+|+|. |++|.|+ +||++|||++|++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~-~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDE-DVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTT-CBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCC-CCHHHcCCCCCCEEEE
Confidence 8999999887664 68 999999999999999995 8999999999976 9999875 8999999999999887
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.57 E-value=6.6e-15 Score=113.88 Aligned_cols=71 Identities=23% Similarity=0.320 Sum_probs=61.6
Q ss_pred EEEEEcCCC--cEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC--Ce---eeCCCcCCccccCCCCCCEEEEEE
Q psy8018 2 KVTVTSLDN--ECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ--GN---ALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 2 ~ItV~~~~g--~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~--Gk---~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
.|+|+..++ ..++++|++++||++||++|+..+|||+++|+|+|. |+ .|.+|++||++|||++|++|+|+-
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 567776555 488999999999999999999999999999999997 56 464455999999999999999974
No 79
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.54 E-value=1.4e-14 Score=112.41 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=61.4
Q ss_pred EEEEEcCC--CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC---ee---eCCCcCCccccCCCCCCEEEEEEe
Q psy8018 2 KVTVTSLD--NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG---NA---LVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 2 ~ItV~~~~--g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G---k~---L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
.|+|+... +..++++|++++||++||++|+..+||||++|+|+|+| +. |.+|++||++|||++|++|+|+..
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 46676544 35789999999999999999999999999999999988 33 434569999999999999999863
No 80
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.52 E-value=2.1e-14 Score=109.10 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=62.2
Q ss_pred EEEEE--cCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC-------CeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 2 KVTVT--SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ-------GNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 2 ~ItV~--~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~-------Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
+|+|+ .++...+...+++++||++||++|+..+||||++|+|+|. |+.|.|+ +||++|||++|++|||+-
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~-~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAND-KQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTT-SBGGGGTCCTTCEEEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCC-CCHHHCCCCCCCEEEEEe
Confidence 35555 3456778899999999999999999999999999999974 7888875 999999999999999987
Q ss_pred e
Q psy8018 73 V 73 (280)
Q Consensus 73 ~ 73 (280)
+
T Consensus 83 ~ 83 (86)
T 4b6w_A 83 L 83 (86)
T ss_dssp C
T ss_pred C
Confidence 5
No 81
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=113.80 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=64.8
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEE--CCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEF--QGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~--~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|.++++..+|+.++++|++++||++||++|++.+||||++|+|+| .|+ |.|+ .+|++|||++|++|+|+..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~-~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDS-TVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTT-SBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCc-CCHHHcCCCCCCEEEEEec
Confidence 667777889999999999999999999999999999999999986 566 8765 8999999999999999765
No 82
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.51 E-value=3.2e-14 Score=131.29 Aligned_cols=72 Identities=32% Similarity=0.448 Sum_probs=68.5
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++++|+.++++|++++||++||++|++.+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.|
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~-~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTGGGTCCTTCEEEEEC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCC-CCHHHcCCCCCCEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999875 8999999999999999864
No 83
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.51 E-value=1.9e-14 Score=135.97 Aligned_cols=72 Identities=18% Similarity=0.405 Sum_probs=66.9
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHH---HhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEE-EEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEV---QSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLV-LLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~---e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l-~l~~~ 73 (280)
|+|+||+.+|+.++|+|++++||.+||++|+. .+|||+++|+|+|+||+|.|+ +||++|||++|++| +|+.|
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~-~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSS-SBTTTTCCCTTSCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCc-CCHHHcCCCCCCEEEEEEec
Confidence 89999999999999999999999999999999 567999999999999999976 89999999999999 55554
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.50 E-value=1.5e-14 Score=113.90 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=65.3
Q ss_pred CEEEEEcCCCcEEEEEeC-CCccHHHHHHHHHHHhCCCCcceEEEECCe-----------ee---CCCcCCccccCCCCC
Q psy8018 1 MKVTVTSLDNECFLLDVS-EDLELENFKAFCEVQSGISAQEIAIEFQGN-----------AL---VDNKKTLKDYNIQDG 65 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~-~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk-----------~L---~d~~~tL~~~gI~~g 65 (280)
|+|+|++.+|.. .++|+ +++||.+||++|+..+|||+++|+|+|+|+ .| .++++||++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 889999999966 79999 999999999999999999999999999998 44 345589999999999
Q ss_pred CEEEEEEe
Q psy8018 66 DLVLLKRV 73 (280)
Q Consensus 66 d~l~l~~~ 73 (280)
++|+|...
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99999875
No 85
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=7.4e-14 Score=107.50 Aligned_cols=72 Identities=24% Similarity=0.244 Sum_probs=61.1
Q ss_pred EEEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC---ee---eCCCcCCccccCCCCCCEEEEEEe
Q psy8018 2 KVTVTSLDNE-CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG---NA---LVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 2 ~ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G---k~---L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
.|+|+..+.. .++++|++++||++||++|+..+|||+++|+|+|.| +. |.+|++||++|||++|++|+|...
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH 87 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence 4666665443 689999999999999999999999999999999986 54 433459999999999999999864
No 86
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.46 E-value=4.6e-15 Score=127.97 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++++|++++|+|++++||++||++|+..+|||+++|+|+|+|++|.|+ .||+ ++++|+|+.+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~-~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNT-ELVT-----DDVTYYLSLK 67 (189)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCC-Cccc-----CCCEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999985 8998 9999999876
No 87
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.44 E-value=9.5e-14 Score=104.92 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=64.5
Q ss_pred CEEEEEcCCCcEEEEE-eCCCccHHHHHHHHHHHhCCCCcceEEEEC--CeeeC--CCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLD-VSEDLELENFKAFCEVQSGISAQEIAIEFQ--GNALV--DNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~le-V~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~--Gk~L~--d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|+|+|++.+|+. .++ ++++.||.+||+.|++++|||+++|+|+|+ +|+|. |+++||++|||++|++|+|...
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 899999999965 488 999999999999999999999999999997 48874 3568999999999999999764
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=7.2e-13 Score=102.16 Aligned_cols=76 Identities=16% Similarity=0.297 Sum_probs=70.7
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCC
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVAR 77 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~ 77 (280)
|+|+|++.+|+.+.+.|.++++++.|++.++++.|+|+++|+|+|+|+.|.++ +|+++|++++||+|+++.++..|
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEeccCC
Confidence 57888888999999999999999999999999999999999999999999876 89999999999999999875544
No 89
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.41 E-value=4.5e-13 Score=107.86 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=61.5
Q ss_pred EEEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC---ee---eCCCcCCccccCCCCCCEEEEEEe
Q psy8018 2 KVTVTSLDNE-CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG---NA---LVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 2 ~ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G---k~---L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
.|+|+..++. .++++|++++||++||++|+..+|||+++|+|+|.| +. |.+|++||++|||++|++|||...
T Consensus 8 ~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 8 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 4667665443 688999999999999999999999999999999977 53 434459999999999999999985
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=3.4e-12 Score=97.82 Aligned_cols=77 Identities=16% Similarity=0.293 Sum_probs=70.7
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART 78 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~ 78 (280)
|+|.|++.+|+.+.+.|.++++++.|+...+++.|+|+++++|+|+|+.|.++ +|.++|++++||+|.+...+..|.
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEeccCCc
Confidence 46778888999999999999999999999999999999999999999999876 899999999999999998765543
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.35 E-value=4.2e-12 Score=92.88 Aligned_cols=70 Identities=16% Similarity=0.311 Sum_probs=66.4
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK 71 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~ 71 (280)
|+|.|++.+|+.+.+.|.++++++.|+...+++.|+|+++++|+|+|+.|.++ +|.++||+++||+|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTT-CCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEE
Confidence 57888899999999999999999999999999999999999999999999876 89999999999999985
No 92
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.33 E-value=1.2e-12 Score=121.72 Aligned_cols=71 Identities=10% Similarity=0.191 Sum_probs=64.1
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE---ECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE---FQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li---~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|.|+|+. +|+.++++|++++||++||++|++.+|||+++|+|+ |+|++|.|+ .||++|||++|++|+|+..
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~-~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADN-VKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTT-SBTTSSCCC--CEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCcc-ccHHHcCCCCCCEEEEEcc
Confidence 4677885 799999999999999999999999999999999999 899999986 8999999999999999875
No 93
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=99.28 E-value=9.1e-12 Score=101.60 Aligned_cols=111 Identities=23% Similarity=0.293 Sum_probs=79.1
Q ss_pred eeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEE
Q psy8018 147 VIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSV 226 (280)
Q Consensus 147 ~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~V 226 (280)
..+.++.++|||+++.|||||||+.|+++...+. +. .+ .....|+|+...........|+|++......+.|
T Consensus 20 ~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p---~~---~~--p~~I~GiGG~i~vr~~~~i~IeI~g~~~~~~~lV 91 (132)
T 3slz_A 20 PPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP---LS---DK--SAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLH 91 (132)
T ss_dssp CCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS---EE---EE--EEEEECSSCEEEEEEECCEEEEETTEEEEECCEE
T ss_pred cCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC---CC---CC--ceEEEccCCEEEEEEEeeeEEEECCeeecceEEE
Confidence 3567899999999999999999999999975443 11 11 2355788875543333345899999877777766
Q ss_pred ecCCCcccccchhhhhcceEEEEecccE-EEeeeeecCCCccce
Q psy8018 227 LEDQPMDMLLGLDMLKRHQVQIAIENDF-LTTSFSVLEDQPMDM 269 (280)
Q Consensus 227 l~~~~~d~ILG~D~L~~~~~~ID~~~~~-L~i~~~~~~~~~~~~ 269 (280)
+.. ...-|||+|||.+++|.|||...- ..+.. .++|+.+
T Consensus 92 ~~~-tPvnLLGrd~Ltqlg~tL~fp~~g~~~~~~---~~~~~~~ 131 (132)
T 3slz_A 92 VPD-CPYPLLGRDLLTKLKAQIHFEGSGAQVVGP---MGQPLQV 131 (132)
T ss_dssp CTT-SSSCEECHHHHHHHTCEEEEETTEEEEECT---TSCBSCC
T ss_pred ECC-CCccEECHhhHhhCCcEEECCCCCceeecc---CCceeee
Confidence 544 345889999999999999999444 33222 2556554
No 94
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.28 E-value=1.9e-11 Score=91.10 Aligned_cols=70 Identities=20% Similarity=0.379 Sum_probs=65.4
Q ss_pred CEEEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018 1 MKVTVTSLDNE-CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK 71 (280)
Q Consensus 1 M~ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~ 71 (280)
|+|.|++.+|+ .+.+.|.++++++.|+...+++.|+|+++++|+|+|+.|.++ +|.++|++++||+|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGK-ELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSC-CCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEe
Confidence 56888888995 899999999999999999999999999999999999999876 89999999999999975
No 95
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.27 E-value=1.8e-11 Score=94.08 Aligned_cols=73 Identities=16% Similarity=0.311 Sum_probs=67.9
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ 74 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~ 74 (280)
|+|.|++.+|+.+.+.|.+++++..|+..+++..|+|+++++|+|+|+.|.++ .|+++|++.+||+|++..++
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCC-CCHHHcCCCCCCEEEEEeec
Confidence 46777888899999999999999999999999999999999999999999876 89999999999999998864
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.27 E-value=1.3e-11 Score=95.11 Aligned_cols=72 Identities=11% Similarity=0.332 Sum_probs=62.7
Q ss_pred EEEEEc---CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC-------eeeCCCcCCccccCCCCCCEEEEE
Q psy8018 2 KVTVTS---LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG-------NALVDNKKTLKDYNIQDGDLVLLK 71 (280)
Q Consensus 2 ~ItV~~---~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G-------k~L~d~~~tL~~~gI~~gd~l~l~ 71 (280)
+|+|+. .+|+.+...+++++||.+||.+|+..+|+|+..|+|.|.+ ..|.||.++|+.|||.+|++|+|.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 456664 4688999999999999999999999999999999999863 236677799999999999999998
Q ss_pred Ee
Q psy8018 72 RV 73 (280)
Q Consensus 72 ~~ 73 (280)
..
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 74
No 97
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.24 E-value=1.6e-11 Score=96.37 Aligned_cols=77 Identities=16% Similarity=0.296 Sum_probs=70.4
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART 78 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~ 78 (280)
|+|.|++.+|+.+.+.|.+++++..|+..++++.|+|+++++|+|+|+.|.++ +|+++|++++||+|++..++..|.
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTT-SCTTTTTCCTTEEEEECCCCCCCS
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEeccCCC
Confidence 46788888999999999999999999999999999999999999999999876 899999999999999988755443
No 98
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=99.22 E-value=3.2e-11 Score=94.64 Aligned_cols=97 Identities=20% Similarity=0.221 Sum_probs=76.4
Q ss_pred eEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccc-cccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEE
Q psy8018 148 IMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRL-IDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSV 226 (280)
Q Consensus 148 ~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~-~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~V 226 (280)
.+.++.++|||+++.||+||||..|+++.+.+.+++++.. -.. .+..|+|+..... ...+++++++.....++.|
T Consensus 7 ~RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p---~~i~GiGG~i~v~-~~~i~i~i~g~~~~gtvlv 82 (104)
T 1fmb_A 7 KRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQG---TGIGGVGGNVETF-STPVTIKKKGRHIKTRMLV 82 (104)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEEC---CCEEETTEEECCE-EEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCCc---cEEEeCCCeEEee-EeeeEEEECCeEEEEEEEE
Confidence 3567899999999999999999999999999999998754 211 2356888754444 7778999998877666555
Q ss_pred ecCCCcccccchhhhhcceEEEEe
Q psy8018 227 LEDQPMDMLLGLDMLKRHQVQIAI 250 (280)
Q Consensus 227 l~~~~~d~ILG~D~L~~~~~~ID~ 250 (280)
-+ ...-|+|.|+|.+.+|.+||
T Consensus 83 ~~--tp~niiGRd~L~qlg~tLnf 104 (104)
T 1fmb_A 83 AD--IPVTILGRDILQDLGAKLVL 104 (104)
T ss_dssp ES--CSSCEECHHHHHHTTCCCCC
T ss_pred CC--CCCCEecHhHHhhcCcEEeC
Confidence 33 45579999999999999876
No 99
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.19 E-value=7.1e-11 Score=92.94 Aligned_cols=72 Identities=14% Similarity=0.320 Sum_probs=67.3
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ 74 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~ 74 (280)
|+|.|++ +|+.+.+.|.++++++.|+..++++.|+|+++++|+|+|+.|.++ +|.++|++++||+|.+..++
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~-~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECC
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCC-CCHHHcCCCCCCEEEEEeec
Confidence 4677888 999999999999999999999999999999999999999999876 89999999999999998864
No 100
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.17 E-value=2.3e-11 Score=96.32 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=69.3
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccC
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVA 76 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p 76 (280)
|+|+|++.+|..+.+.|.++++++.|+..+++..|+|+++|+|+|+|+.|.++ +|+++|++++||+|.+...+..
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~-~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDET-KTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSS-SHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEcccC
Confidence 56888888999999999999999999999999999999999999999999876 8999999999999999886443
No 101
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=98.97 E-value=4.3e-09 Score=81.55 Aligned_cols=91 Identities=18% Similarity=0.353 Sum_probs=68.7
Q ss_pred EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccce-eeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEe
Q psy8018 149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRW-AGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVL 227 (280)
Q Consensus 149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~-~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl 227 (280)
+.++.++|||+++.||+||||..|+++. ..++. ++ .-+..|+|+....-+...+++++.+.....++.|
T Consensus 8 RP~vti~I~Gq~~e~LLDTGAD~TVl~~-----~~~Pg----~w~pk~igGiGG~i~v~qy~~i~iei~g~~~~gtvlV- 77 (99)
T 3ec0_A 8 RPVVTAYIEGQPVEVLLDTGADDSIVAG-----IELGN----NYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMT- 77 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEESS-----CCCCS----CCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE-
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEcC-----cccCC----CCCceEEEecCCcEeeeEEeeEEEEECCeEEEEEEEe-
Confidence 4578899999999999999999999963 33332 22 1245688876555567778999999876666666
Q ss_pred cCCCcccccchhhhhcceEEEEe
Q psy8018 228 EDQPMDMLLGLDMLKRHQVQIAI 250 (280)
Q Consensus 228 ~~~~~d~ILG~D~L~~~~~~ID~ 250 (280)
.. ..-=|+|-|+|.+.+|.++|
T Consensus 78 ~~-tPvniiGRnlLtqlG~tLnf 99 (99)
T 3ec0_A 78 GD-TPINIFGRNILTALGMSLNL 99 (99)
T ss_dssp EC-CSSCEECHHHHHHHTCEEEC
T ss_pred CC-CCcCeeehhhHhhcCcEEeC
Confidence 33 33368999999999999986
No 102
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=98.92 E-value=1.3e-08 Score=79.00 Aligned_cols=92 Identities=16% Similarity=0.307 Sum_probs=70.0
Q ss_pred EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEec
Q psy8018 149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLE 228 (280)
Q Consensus 149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl~ 228 (280)
+.++.++|+|+++.||+||||..|+++. ..++..-. .-+..|+|+....-+...+++++.+.....++.| .
T Consensus 8 rP~vtvkI~Gq~~eaLLDTGAD~TVl~~-----~~~p~~wk---pk~igGiGG~i~v~qy~qi~iei~g~~~~gtvlV-~ 78 (99)
T 2hs1_A 8 RPLVTIKIGGQLKEALLDTGADDTIIEE-----MSLPGRWK---PKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLV-G 78 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSEEESC-----CSSCCCCE---EEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE-S
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEec-----ccCCCCCC---CcEEEeCCCcEeeeEeccEEEEEeCCEEEEEEEe-C
Confidence 4568899999999999999999999984 34442211 1245788876656677778999999877766666 3
Q ss_pred CCCcccccchhhhhcceEEEEe
Q psy8018 229 DQPMDMLLGLDMLKRHQVQIAI 250 (280)
Q Consensus 229 ~~~~d~ILG~D~L~~~~~~ID~ 250 (280)
..++ =|+|.|+|.+.+|.++|
T Consensus 79 ~tPv-niiGRd~Ltqlg~tLnf 99 (99)
T 2hs1_A 79 PTPV-NIIGRNLLTQIGATLNF 99 (99)
T ss_dssp CCSS-CEECHHHHTTTTCEEEC
T ss_pred CCcc-CchhHhHHHHcCCEEeC
Confidence 3334 58999999999999986
No 103
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.83 E-value=2e-08 Score=79.97 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=66.0
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ 74 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~ 74 (280)
+|.|+..+|..+.+.|.+++++..|+....+..|+|+.+++++|+|+.|.++ .|.+++++.+||+|.+...|
T Consensus 42 ~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~-~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 42 KLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTT-CCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCC-CCHHHcCCCCCCEEEEEeec
Confidence 4566677888889999999999999999999999999999999999999875 89999999999999998754
No 104
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.82 E-value=3.5e-08 Score=85.68 Aligned_cols=92 Identities=15% Similarity=0.309 Sum_probs=72.3
Q ss_pred EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccce-eeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEe
Q psy8018 149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRW-AGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVL 227 (280)
Q Consensus 149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~-~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl 227 (280)
+..+.++|||+++.||+||||+.|+++ ..+++. ++ ..+..|+|+....-+....++++.+.....++.|-
T Consensus 8 RP~vtv~I~Gq~~e~LLDTGAD~TVl~-----~~~lpg----~w~pk~igGIGG~i~vrqy~~i~iei~g~~~~gtvlVg 78 (203)
T 3ka2_A 8 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLPG----XWKPKLIGGIAGFIKVRQYDQIPVEIXGHKAIGTVLVG 78 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCSS----CEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEe-----cccCCC----CCCceEEEEccCcEEEEEEcceeEEEcCeEEEEEEeeC
Confidence 446889999999999999999999998 355543 33 22457888766666777789999998766666553
Q ss_pred cCCCcccccchhhhhcceEEEEec
Q psy8018 228 EDQPMDMLLGLDMLKRHQVQIAIE 251 (280)
Q Consensus 228 ~~~~~d~ILG~D~L~~~~~~ID~~ 251 (280)
....-|+|.|+|.+.+|.++|.
T Consensus 79 --~tPvnIiGRd~LtqlG~tLnf~ 100 (203)
T 3ka2_A 79 --PTPVNIIGRNLLTQIGXTLNFX 100 (203)
T ss_dssp --CCSSCEECHHHHTTTTCEEEGG
T ss_pred --CCCcCccchhhhhhcCceEEec
Confidence 3455699999999999999998
No 105
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=98.71 E-value=5.8e-08 Score=77.36 Aligned_cols=93 Identities=23% Similarity=0.318 Sum_probs=66.5
Q ss_pred EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceee-e-eecCceeeEEeEEEEEEEEECCeE-----EE
Q psy8018 149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAG-I-AKGVGVQRIIGRIHMVQIAIENDF-----LT 221 (280)
Q Consensus 149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g-~-a~gvG~~~~~g~i~~~~i~IG~~~-----~~ 221 (280)
+.++ ++|||+++.||+||||..|+++..- +.+ ...++.. + ..|+|+....-+...+.++|.+.. ..
T Consensus 14 rP~v-ikI~Gq~~eaLLDTGAD~TVi~~~~-----~~~-~p~~wkpk~~igGiGG~i~v~qy~qv~iei~g~~~~~~~~~ 86 (116)
T 2hah_A 14 PEIL-IFVNGYPIKFLLDTGADITVLNRRD-----FQV-KNSIENGRQMIGGIGGFIRGTNYINVHLEIRDENYKTQCIF 86 (116)
T ss_dssp CEEE-EEETTEEEEEEECTTCSSCEEEGGG-----CCC-TTCEEEEEEEEEETTEEEEEEEEEEEEEEECCTTSCCEEEE
T ss_pred CCEE-EEECCEEEEEEecCCCCcEEEcccc-----ccc-CCCCCCCceEEecCCCceeeeEEccEEEEEeCCCCCcceeE
Confidence 5667 9999999999999999999998532 200 0223322 2 568887555556667789998765 55
Q ss_pred eEEEEecCCC--cccccchhhhhcceEEEE
Q psy8018 222 TSFSVLEDQP--MDMLLGLDMLKRHQVQIA 249 (280)
Q Consensus 222 ~~~~Vl~~~~--~d~ILG~D~L~~~~~~ID 249 (280)
-++.|.++.+ + =|+|-|+|.+.+|.+.
T Consensus 87 gtvlV~p~tP~~v-niiGRd~Ltqlg~tL~ 115 (116)
T 2hah_A 87 GNVCVLEDNSTPV-NILGRDNMIKFNIRLV 115 (116)
T ss_dssp EEEEEETTCCCSS-EEECHHHHTTTTCCCC
T ss_pred EEEEECCCCCccc-cEecHHHHhHcCCEEe
Confidence 5666776444 4 5899999999998764
No 106
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.67 E-value=9.1e-08 Score=83.08 Aligned_cols=75 Identities=13% Similarity=0.283 Sum_probs=67.8
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART 78 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~ 78 (280)
+|.|+ .+|....+.|.+++++..|+...++..|+|+.++|++|+|+.|.++ .|.+++++.+||+|.+...+..|+
T Consensus 31 ~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~-~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 31 NLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEeccCcCc
Confidence 45665 4888999999999999999999999999999999999999999876 899999999999999999765554
No 107
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.64 E-value=1.4e-08 Score=75.73 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=58.2
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCee---e-CCCcCCccccCCCCCCEEEEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNA---L-VDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~---L-~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
|.|.|+..+| .+.++|++++|+.+|+++|++.+++|++.|.|++.-.+ | .+.+.+|+++||+.||+|+|..
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~~ 79 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLFP 79 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC--
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEec
Confidence 5678888887 66699999999999999999999999999888765444 3 2245899999999999999853
No 108
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.8e-07 Score=80.42 Aligned_cols=74 Identities=14% Similarity=0.290 Sum_probs=66.6
Q ss_pred EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018 3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART 78 (280)
Q Consensus 3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~ 78 (280)
|.|+ .+|..+.+.|.+++++..|+....+..|+|+.+++++|+|+.|.++ .|.+++++.|||+|.+...|..|.
T Consensus 60 LKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~d-dTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 60 LKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQAD-QTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSS-CCTTTTTCCTTEEEEECCCCCTTG
T ss_pred EEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCC-CCHHHcCCCCCCEEEEEEeccCCC
Confidence 4454 4888999999999999999999999999999999999999999875 899999999999999998765553
No 109
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.34 E-value=1e-06 Score=67.49 Aligned_cols=67 Identities=9% Similarity=0.165 Sum_probs=51.2
Q ss_pred cCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeC-CCcCCccccC-CCCCCEEEEEEe
Q psy8018 7 SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALV-DNKKTLKDYN-IQDGDLVLLKRV 73 (280)
Q Consensus 7 ~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~-d~~~tL~~~g-I~~gd~l~l~~~ 73 (280)
...+..++++|.|+.|+..||+.|++++|||+++|+|+|.|+.|. +.++.-..|- -.+..-|+|..+
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 456888999999999999999999999999999999999998874 3333444443 233445555543
No 110
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.31 E-value=8.2e-08 Score=83.58 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=1.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART 78 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~ 78 (280)
|.|.| ..+|....+.|.+++.+..|+....+..|+|+++++++|+|+.|.++ .|.++++++|||+|.+...+..|.
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dd-dTPadL~MEDGDtIDV~leQ~GG~ 97 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQIGGL 97 (227)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCC-CCHHHcCCCCCCEEEEEecccCCc
Confidence 45666 56788889999999999999999999999999999999999999875 899999999999999998765554
No 111
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.31 E-value=5e-06 Score=72.15 Aligned_cols=91 Identities=16% Similarity=0.332 Sum_probs=68.8
Q ss_pred EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccce-eeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEe
Q psy8018 149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRW-AGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVL 227 (280)
Q Consensus 149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~-~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl 227 (280)
+..+.++|+|+++.||+||||..|+++ ...++ .+| .-+..|+|+.-..-+...+++++.+.....++.|-
T Consensus 112 rP~~~iki~Gq~~e~LlDTGAD~TVl~-----~~~lp----g~w~pk~igGiGg~i~v~qy~~i~iei~g~~~~~tvlVg 182 (203)
T 3ka2_A 112 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLP----GXWKPKLIGGIGGFIKVRQYDQIPVEIXGHKAIGTVLVG 182 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCC----SCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES
T ss_pred CCcEEEEECCEEEeeeecccCCceeee-----cccCC----CCCCceEEeeccceEEEEEeccEEEEECCeEEEEEEEEC
Confidence 445789999999999999999999995 24443 233 12456888765566667778999988766666663
Q ss_pred cCCCcccccchhhhhcceEEEEe
Q psy8018 228 EDQPMDMLLGLDMLKRHQVQIAI 250 (280)
Q Consensus 228 ~~~~~d~ILG~D~L~~~~~~ID~ 250 (280)
+ ..-=|+|-|.|.+.+|.++|
T Consensus 183 p--tPvniiGRn~LtqlG~tl~f 203 (203)
T 3ka2_A 183 P--TPVNIIGRNLLTQIGXTLNF 203 (203)
T ss_dssp C--CSSCEECHHHHGGGTCEEEC
T ss_pred C--CCcCeechhhHHHhCCeeeC
Confidence 3 35568999999999999986
No 112
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=98.18 E-value=1.3e-06 Score=69.26 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=54.7
Q ss_pred EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCcccccccee-eeeecCceeeEEeEEEEEEE-E-ECCeEEEeEEE
Q psy8018 149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWA-GIAKGVGVQRIIGRIHMVQI-A-IENDFLTTSFS 225 (280)
Q Consensus 149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~-g~a~gvG~~~~~g~i~~~~i-~-IG~~~~~~~~~ 225 (280)
+..+.++|||+++.||+||||..|+++. ..++..-..... -+..|+|+.-..-+.....+ + +.+...-....
T Consensus 9 RP~vti~I~Gq~~eaLLDTGADdTVi~~-----~~lpg~W~p~~~~k~igGIGG~i~v~qy~~~~~~~~i~g~k~i~tvl 83 (114)
T 3sqf_A 9 KPSLTLWLDDKMFTGLINTGADVTIIKL-----EDWPPNWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKENNSGLIKPF 83 (114)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEG-----GGSCTTSCEEECCCCCTTCCGGGCCEEESSCEEEECTTCCEEEECCE
T ss_pred CCeEEEEECCEEEEEEEccCCCceEEec-----ccCCCCcccCcCceEEEeccceEEEEEeccceEEEecCCCEEEEEEE
Confidence 4457899999999999999999999984 333321111000 13457886322222222222 2 44544333334
Q ss_pred EecCCCcccccchhhhhcceEEEEecccEE
Q psy8018 226 VLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255 (280)
Q Consensus 226 Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L 255 (280)
|+...++ =|+|-|.|.+.+|.++|.+..+
T Consensus 84 V~~ptPv-NIiGRn~LtqlG~tLnfp~~~~ 112 (114)
T 3sqf_A 84 VIPNLPV-NLWGRDLLSQMKIMMASPNDIV 112 (114)
T ss_dssp EETTCSS-CEECHHHHTTSCC---------
T ss_pred ECCCCcc-cEEchhhHhhcCcEEECCCccc
Confidence 5433344 4699999999999999986543
No 113
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.14 E-value=1.8e-05 Score=58.30 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=58.4
Q ss_pred EEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc-ceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018 5 VTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ-EIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK 71 (280)
Q Consensus 5 V~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~-~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~ 71 (280)
++.+...-+-+.|.++.+|.+|-+.-..+.|||++ ..+|.|.|..|..+ .|+++|++.|||.|-++
T Consensus 14 ~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~-~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 14 LRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPN-DQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTT-SBGGGSSCCTTCEEEEE
T ss_pred hhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCcc-CChhhhCCcCCceeeee
Confidence 45555556779999999999999999999999999 99999999999754 89999999999999875
No 114
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.12 E-value=1.2e-05 Score=62.00 Aligned_cols=68 Identities=21% Similarity=0.382 Sum_probs=60.6
Q ss_pred EEEEcCCC-cEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018 3 VTVTSLDN-ECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK 71 (280)
Q Consensus 3 ItV~~~~g-~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~ 71 (280)
|.|+..+| +.+.+.|.+++.+..|.....++.|++++..+++|+|..|..+ .|.+++++.+||+|.+.
T Consensus 28 LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~-~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 28 LRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGR-ELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSC-SCHHHHTCCTTEEEEEE
T ss_pred EEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEe
Confidence 44555677 4788999999999999999999999999999999999999865 89999999999999874
No 115
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.98 E-value=1.1e-05 Score=65.24 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=59.0
Q ss_pred EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc-------------------------------------ceEEEE
Q psy8018 3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ-------------------------------------EIAIEF 45 (280)
Q Consensus 3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~-------------------------------------~Q~Li~ 45 (280)
+.|+.++|...++-|+.+.+|.+++..|..+.||+.. .|+|-.
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 7899999999999999999999999999999999854 344422
Q ss_pred --CCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 46 --QGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 46 --~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
.+..|. +++||.++||.++++|.|..|
T Consensus 94 dd~~~WLD-~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 94 DDELNWLD-HGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp SSSEEEEC-SSSCHHHHTCCTTSEEEEEES
T ss_pred cCCCCccc-CCCcHHHcCCCCCCEEEEEEE
Confidence 235674 569999999999999999875
No 116
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=97.95 E-value=6.2e-06 Score=66.26 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=50.9
Q ss_pred EcCEEEEEEEcCCCcceecCHHHHHHcCCccccccce-ee--eeecCceeeEEeEEE-EEEEEECCe--EEEeEEEEecC
Q psy8018 156 VNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRW-AG--IAKGVGVQRIIGRIH-MVQIAIEND--FLTTSFSVLED 229 (280)
Q Consensus 156 InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~-~g--~a~gvG~~~~~g~i~-~~~i~IG~~--~~~~~~~Vl~~ 229 (280)
|+|+.+.||+||||..|+++. ..++..-. ++ .+ ...|+|+....-+.. ..++++-+. ....++.|.+.
T Consensus 27 i~gq~~eaLLDTGAD~TVl~~-----~~lP~~W~-k~~~~~~~igGIGG~i~v~qy~~~i~iei~g~~g~~~~tvlV~P~ 100 (124)
T 2rsp_A 27 QRSVYITALLDSGADITIISE-----EDWPTDWP-VMEAANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPA 100 (124)
T ss_dssp CSEEEEEEEECTTCSSCEEET-----TTSCTTSC-EEECC---------CCCEEEESSCEEEEEECTTSCBCCCEEECCE
T ss_pred CCCEEEEEEecCCCCcEEEec-----ccCCCcce-eeccccceeeecCceEeeEEeCCceEEEEeCCCCcEEEEEEECcC
Confidence 999999999999999999984 33332211 11 11 145777643333444 456777554 33334445442
Q ss_pred C--CcccccchhhhhcceEEEE
Q psy8018 230 Q--PMDMLLGLDMLKRHQVQIA 249 (280)
Q Consensus 230 ~--~~d~ILG~D~L~~~~~~ID 249 (280)
. ..-=|+|-|.|.+.+|.+.
T Consensus 101 ~~~tPvnIiGRdlLtqlG~tL~ 122 (124)
T 2rsp_A 101 VAMVRGSILGRDCLQGLGLRLT 122 (124)
T ss_dssp EESCSSEEECHHHHHHTTCEEE
T ss_pred CCCCceeEECHhHHhhCCcEEe
Confidence 1 1235899999999999875
No 117
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.92 E-value=3.7e-05 Score=66.92 Aligned_cols=74 Identities=14% Similarity=0.315 Sum_probs=65.3
Q ss_pred EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018 3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART 78 (280)
Q Consensus 3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~ 78 (280)
|.|+. +|....+.|..++.+..|+...++..|+|+++++++|+|+.+.++ +|.+++++.++|+|.+...|..++
T Consensus 24 ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~-~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 24 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp EEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTT-CCTTTTTCCTTEEEEEECSCTTCC
T ss_pred EEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCC-CChHHhhhcccccchhhccccccc
Confidence 44455 677888999999999999999999999999999999999999875 899999999999999988755443
No 118
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.75 E-value=6.7e-05 Score=55.87 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=55.4
Q ss_pred EEEEc--CCCcEEEEEeCCCccHHHHHHHHHHHhCCCC-----cceEEEECCeeeCCCcCCccccCCCCCCEEEE
Q psy8018 3 VTVTS--LDNECFLLDVSEDLELENFKAFCEVQSGISA-----QEIAIEFQGNALVDNKKTLKDYNIQDGDLVLL 70 (280)
Q Consensus 3 ItV~~--~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~-----~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l 70 (280)
||+.. -.++.+.|.|+...|+..|+..+.+.++++. .+.++.-.|..|.++ ++|++|||++||.|.+
T Consensus 7 ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~-~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 7 ITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGE-CKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETT-SBTGGGTCCTTCEEEE
T ss_pred EEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCC-CEEeeCCcCCCCEEEE
Confidence 44443 3799999999999999999999999998865 234556678888875 8999999999999875
No 119
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.70 E-value=5e-06 Score=77.94 Aligned_cols=73 Identities=14% Similarity=0.312 Sum_probs=0.0
Q ss_pred EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCC
Q psy8018 3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVAR 77 (280)
Q Consensus 3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~ 77 (280)
|.|++ +|....+.|.++++++.|+...++..|+++++++++|+|+.|.++ .|.+++|+++||+|.+...|..|
T Consensus 24 LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~-~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 24 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCC-CChHHcCCCccchhhhhhccCch
Confidence 44444 577788999999999999999999999999999999999999876 89999999999999999875433
No 120
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.61 E-value=0.00028 Score=53.46 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=66.5
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|.|+|-..+++..++.|.|++++.++-+..-.++|+++++-.|.|++|+|. -+-++.-.|+-+|..|.|+.+
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lD-LSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD-LSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES-SSCBHHHHCCCSSCEEEEECS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecc-ccceeEecCCCCCCEEEEEEc
Confidence 678999999999999999999999998888889999999999999999995 458999999999999999875
No 121
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.52 E-value=0.0006 Score=52.07 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=62.1
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
.|.|+. +|...-+-|-.+.-.+.|...-....|+++++.+++|+|..+..+ .|-+++|+.+||+|-+..
T Consensus 23 niKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~-~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 23 PLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPT-ATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTT-SCHHHHTCCSSCEEEEEE
T ss_pred EEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCC-CCHhHcCCCCCCEEEEEE
Confidence 355664 678888999999999999999999999999999999999999875 899999999999998876
No 122
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.51 E-value=0.00044 Score=51.30 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=60.9
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeC--CCcCCccccCCCCCCEEEEEEe
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALV--DNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~--d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
+|-|+.++|....-....+.||.+|.+.|+. .+.+.....|+ |=.|.|. |.++||+++|+.++++|+|..+
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence 4678899999988889999999999999998 67788888998 4468885 6668999999999999998653
No 123
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.44 E-value=1.9e-05 Score=74.62 Aligned_cols=69 Identities=13% Similarity=0.300 Sum_probs=0.0
Q ss_pred EEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018 4 TVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ 74 (280)
Q Consensus 4 tV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~ 74 (280)
.|++ +|....+.|.+++++..|+...+++.|+|+.+++++|+|+.|.++ +|.+++|+++||+|.+...|
T Consensus 34 kv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~-~Tp~~l~med~d~i~~~~~q 102 (389)
T 4da1_A 34 KVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QAPEDLDMEDNDIIEAHREQ 102 (389)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEeeeeecc
Confidence 3444 567778999999999999999999999999999999999999875 89999999999999998774
No 124
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=97.25 E-value=0.00034 Score=55.17 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=57.0
Q ss_pred EEEEEEEEc-----CEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECC--eE--
Q psy8018 149 MLYINCRVN-----GHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIEN--DF-- 219 (280)
Q Consensus 149 ~l~i~~~In-----G~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~--~~-- 219 (280)
+-.+.++|+ |+.+.||+||||..|++.. ..++..-......+.-|+|+.....+....++.+-. ..
T Consensus 10 RPlvtikI~~~~~~Gq~~eaLLDTGADdTVl~~-----~~lPg~Wkp~~tkiiGGiGg~~~~~qs~~~pv~i~lpfr~~p 84 (116)
T 3liy_A 10 RPVIKAQVDTQTSHPKTIEALLDTGADMTVIPI-----ALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTP 84 (116)
T ss_dssp CCEEEEEEECSSSCCEEEEEEECTTBSSCEEEG-----GGSCTTCCEEECCEEETTEEESSSEEEESSCEEEECTTCCSC
T ss_pred CCeEEEEEccccCCCeEeEEEeccCCCccEEec-----ccCCCCCcccccceEeecccceeeeEecCCCeEEEeccCCcc
Confidence 445889999 9999999999999999973 334322111101244567754434444444555543 01
Q ss_pred EEeEEEEecCCCcccccchhhhhcceEEEEe
Q psy8018 220 LTTSFSVLEDQPMDMLLGLDMLKRHQVQIAI 250 (280)
Q Consensus 220 ~~~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~ 250 (280)
...+...++..+.=-|||-|.|.+.+..+.+
T Consensus 85 v~l~~~lv~~~~~w~iigRd~l~q~q~~l~l 115 (116)
T 3liy_A 85 IVLTSCLVDTKNNWAIIGRDALQQCQGVLYL 115 (116)
T ss_dssp EEESSCEEETTSCCCEECHHHHHHTTCEEEC
T ss_pred eeeceEEEcCCCceeEechhHHhhhccEEec
Confidence 1111122222233379999999998876643
No 125
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.19 E-value=0.002 Score=50.22 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=62.5
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeC--CCcCCccccCCCCCCEEEEEEe
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALV--DNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~--d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
+|-|+.++|..+.-....+.||.+|.+.|+...+.+.....|+ |--|.+. |.++||+++|+.+..+|++...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 5778899999999999999999999999999988877778887 4577786 5568999999999999998765
No 126
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=96.81 E-value=0.00093 Score=55.02 Aligned_cols=96 Identities=14% Similarity=0.207 Sum_probs=60.6
Q ss_pred CEEEEEEEcCCCcceecCHHHHHHc---C-------Cccc-----cccce---eeeeecCce---------eeEEeEEEE
Q psy8018 158 GHPVKAFIDSGAQTTIMSAACAARV---N-------ITRL-----IDTRW---AGIAKGVGV---------QRIIGRIHM 210 (280)
Q Consensus 158 G~~v~alVDTGAq~tiis~~~A~rl---g-------L~~~-----~d~r~---~g~a~gvG~---------~~~~g~i~~ 210 (280)
|.+++|=|||||..|-|+..-.+.. | +... ...+. .-+....|. ...-..| .
T Consensus 17 g~~~~AKiDTGA~TSSLhA~dI~~Ferdg~~wVrF~~~~~~~~~~~e~pv~~~~~Ik~s~g~~~~~~~~~~~e~R~VV-~ 95 (146)
T 2pma_A 17 NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKRPVV-L 95 (146)
T ss_dssp TEEEEEEECTTCSSEEEECEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEEC---------------CCEEEEE-E
T ss_pred CCEEEEEecCCcCcceecceeEEEeeeCCCcEEEEEEecCCCCceEEEEeEEEEEEecCCCccccccccCCcccccEE-E
Confidence 7789999999999999986544321 1 1000 00000 001111122 1222222 2
Q ss_pred EEEEECCeEEEeEEEEecCC--CcccccchhhhhcceEEEEecccE
Q psy8018 211 VQIAIENDFLTTSFSVLEDQ--PMDMLLGLDMLKRHQVQIAIENDF 254 (280)
Q Consensus 211 ~~i~IG~~~~~~~~~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~ 254 (280)
..+++|+...++.|..-+-. .+.+|||-+||+..++.+|.....
T Consensus 96 ~~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~lVD~s~~~ 141 (146)
T 2pma_A 96 LNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPALTF 141 (146)
T ss_dssp EEEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTEEEETTCCC
T ss_pred EEEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCEEECCchhc
Confidence 38999999999999988744 577999999999999999988754
No 127
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.76 E-value=0.0052 Score=49.03 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=61.3
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeee--CCCcCCccccCCCCCCEEEEEEe
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNAL--VDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L--~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
+|-|+.++|..+.-....+.||.+|.+.|+.. +.+.....|+ |=.|.| .|.++||+++|+.+..+|+|...
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 47788999999999999999999999999887 7777888887 458889 56679999999999999988763
No 128
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.49 E-value=0.0073 Score=43.85 Aligned_cols=61 Identities=21% Similarity=0.295 Sum_probs=49.6
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
|+|+|+..+.....+++++..||.+|-+. .|+|++.-....||+.+..+ . +.+||.|.+..
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d-~------~l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPED-Q------SVEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTT-S------SSCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHH-H------CCCCCEEEEEE
Confidence 99999987655667999999999998665 79999888888899998755 2 34699998864
No 129
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.32 E-value=0.016 Score=45.04 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=59.4
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeC-CCcCCccccCCCCCCEEEEEEe
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALV-DNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~-d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
+|-|+.++|..+.-....+.||.+|.+.|+.. +..+....|+ |=.|.|. |.++||+++|+.+..+|+|..+
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 57788999999888899999999999999976 5556677776 4477886 5669999999999999988764
No 130
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.89 E-value=0.017 Score=46.18 Aligned_cols=66 Identities=15% Similarity=0.322 Sum_probs=54.7
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHh-CCCCcceEEE--ECCeeeCCCcCCccccCCCCCCE
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQS-GISAQEIAIE--FQGNALVDNKKTLKDYNIQDGDL 67 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~-gip~~~Q~Li--~~Gk~L~d~~~tL~~~gI~~gd~ 67 (280)
+|-|+..+|..+.-....+.||.+|.+.|.... +.+.....|+ |-.|.|.|+++||+++|+.+..+
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 477899999999999999999999999999863 4555677777 45788987779999999998443
No 131
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=95.73 E-value=0.11 Score=49.69 Aligned_cols=92 Identities=12% Similarity=0.269 Sum_probs=63.7
Q ss_pred eeEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH-HHcCCccccccc----e--e----eeeecCceeeEEeEEEEEE
Q psy8018 147 VIMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA-ARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQ 212 (280)
Q Consensus 147 ~~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A-~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~ 212 (280)
....++++.|+ ++++.+++|||++.+.+. ..|. ..|.-....+.. + . .+.+|-|+ ..|.+....
T Consensus 136 d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs--~~G~~~~Dt 213 (451)
T 3qvc_A 136 NVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGT--ISGIFSKDL 213 (451)
T ss_dssp CEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCE--EEEEEEEEE
Confidence 45689999998 899999999999988874 3442 345432222211 1 1 13345554 789998889
Q ss_pred EEECCeEEEeEEEEecC----------CCcccccchhh
Q psy8018 213 IAIENDFLTTSFSVLED----------QPMDMLLGLDM 240 (280)
Q Consensus 213 i~IG~~~~~~~~~Vl~~----------~~~d~ILG~D~ 240 (280)
+.+|+..++..|.+... ...|+||||.+
T Consensus 214 v~igg~~v~~~Fg~a~~t~~~~~~f~~~~~dGILGLg~ 251 (451)
T 3qvc_A 214 VTIGKLSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGW 251 (451)
T ss_dssp EEETTEEEEEEEEEEEEEEECTTHHHHSCCCEEEECSS
T ss_pred EEECCEEEEEEEEEEEeccccCCCccCCCCCEEEecCC
Confidence 99999877766666543 35799999975
No 132
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=95.41 E-value=0.062 Score=50.27 Aligned_cols=92 Identities=16% Similarity=0.317 Sum_probs=62.9
Q ss_pred eeEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH---HHcCCccccccc----e--e----eeeecCceeeEEeEEEE
Q psy8018 147 VIMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA---ARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHM 210 (280)
Q Consensus 147 ~~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A---~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~ 210 (280)
....++++.|+ ++++++++|||++.+-+ +..|. ..|......+.. + . .+.+|-|+ ..|.+..
T Consensus 60 ~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~ 137 (383)
T 2x0b_A 60 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLSQ 137 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEE
T ss_pred CCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCcc--EEEEEEe
Confidence 35789999998 79999999999998877 44453 345332222211 1 1 13456664 5799988
Q ss_pred EEEEECCeEEEeEEEEecC--------CCcccccchhh
Q psy8018 211 VQIAIENDFLTTSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 211 ~~i~IG~~~~~~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
..+.+|+..++..|.+... ...|+||||-+
T Consensus 138 Dtv~ig~~~v~~~Fg~a~~~~g~~f~~~~~dGIlGLg~ 175 (383)
T 2x0b_A 138 DIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 175 (383)
T ss_dssp EEEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred eEEEEcCceEEEEEEEEEecCCcccccCCCceEeccCC
Confidence 8999999877666655542 25799999875
No 133
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.07 E-value=0.17 Score=35.77 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=46.4
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
|+|+|.-.. ....+++++..|+.+|.+.+ ++++..-.+..||..+..+ . -+++||.|.+..
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~-~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDE-E-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTT-S-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCc-c-----cCCCCCEEEEEe
Confidence 677776533 23467888889999998875 5777777788999998754 2 599999999876
No 134
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=94.85 E-value=0.056 Score=38.92 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=48.5
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART 78 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~ 78 (280)
|+|+| +|+.+ ++ +..||.+|.+. .++++..-.+..||..+.. ...++.-+++||.|.+.. .+.|.
T Consensus 1 M~I~v---NG~~~--e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr--~~~~~~~L~dGD~veIv~-~VgGG 65 (73)
T 2kl0_A 1 MLVTI---NGEQR--EV-QSASVAALMTE----LDCTGGHFAVALNYDVVPR--GKWDETPVTAGDEIEILT-PRQGG 65 (73)
T ss_dssp CCEEE---TTEEE--CC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECH--HHHTTCBCCTTCEEEEEC-CCCCC
T ss_pred CEEEE---CCEEE--Ec-CCCcHHHHHHH----cCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEc-cccCC
Confidence 66766 56655 45 66899988664 6888888888999999963 456677899999999976 34443
No 135
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=94.80 E-value=0.097 Score=48.65 Aligned_cols=92 Identities=23% Similarity=0.361 Sum_probs=61.9
Q ss_pred eeEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH-HHcCCccccccc----e--e----eeeecCceeeEEeEEEEEE
Q psy8018 147 VIMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA-ARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQ 212 (280)
Q Consensus 147 ~~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A-~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~ 212 (280)
....++++.|+ ++++.+++|||++.+-+ +..|. ..|+-....+.. + . .+.+|-|+ ..|.+....
T Consensus 61 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dt 138 (375)
T 1miq_A 61 NIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT--VKGFFSKDL 138 (375)
T ss_dssp CEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCe--EEEEEEEEE
Confidence 45788999998 89999999999999877 44442 234322222111 1 1 23455554 578888889
Q ss_pred EEECCeEEEeEEEEecC----------CCcccccchhh
Q psy8018 213 IAIENDFLTTSFSVLED----------QPMDMLLGLDM 240 (280)
Q Consensus 213 i~IG~~~~~~~~~Vl~~----------~~~d~ILG~D~ 240 (280)
+.+|+..++-.|.+... ...|+||||.+
T Consensus 139 v~ig~~~v~~~Fg~~~~~~~~~~~f~~~~~dGilGLg~ 176 (375)
T 1miq_A 139 VTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGW 176 (375)
T ss_dssp EEETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSS
T ss_pred EEEcCceECcEEEEEEeccccccccccCCCceEEeCCC
Confidence 99999766556665544 36799999875
No 136
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.79 E-value=0.1 Score=45.16 Aligned_cols=63 Identities=11% Similarity=0.200 Sum_probs=52.7
Q ss_pred cEEEEEeCCCccHHHHHHHHHHHhCCCCc-ceEEE--E-CC--eeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 11 ECFLLDVSEDLELENFKAFCEVQSGISAQ-EIAIE--F-QG--NALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 11 ~~~~leV~~~~tV~~LK~~Ie~e~gip~~-~Q~Li--~-~G--k~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
..+++.++...||.+|+..+...++||++ +-||- | .+ ..|.+.++||++++|.+|..|.|-.+
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r 208 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence 34678889999999999999999999997 68885 3 22 33566668999999999999999886
No 137
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.72 E-value=0.13 Score=45.02 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=52.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhCCCCc-ceEEEE-C----CeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 12 CFLLDVSEDLELENFKAFCEVQSGISAQ-EIAIEF-Q----GNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 12 ~~~leV~~~~tV~~LK~~Ie~e~gip~~-~Q~Li~-~----Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
.+++.++...||.+|+..+...++||++ .-||.. + ...|.|.+.||+++++.+|+.|.+-.+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 4567789999999999999999999997 688864 3 334666668999999999999999886
No 138
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=94.50 E-value=0.11 Score=49.99 Aligned_cols=91 Identities=23% Similarity=0.367 Sum_probs=61.8
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH-HHcCCcccccc----ce------eeeeecCceeeEEeEEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA-ARVNITRLIDT----RW------AGIAKGVGVQRIIGRIHMVQI 213 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A-~rlgL~~~~d~----r~------~g~a~gvG~~~~~g~i~~~~i 213 (280)
...++++.|+ ++++.+++|||++.+-+. ..|. ..|.-....+. .+ -.+.+|-|+ ..|.+....+
T Consensus 138 ~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs--~~G~~~~Dtv 215 (453)
T 2bju_A 138 IMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGT--VSGFFSKDLV 215 (453)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCC--eEEEEEEEEE
Confidence 5788999998 899999999999998774 4442 23432211111 11 123456665 5799988899
Q ss_pred EECCeEEEeEEEEecCC----------Ccccccchhh
Q psy8018 214 AIENDFLTTSFSVLEDQ----------PMDMLLGLDM 240 (280)
Q Consensus 214 ~IG~~~~~~~~~Vl~~~----------~~d~ILG~D~ 240 (280)
.+|+..++..|.+.... ..|+||||.+
T Consensus 216 ~ig~~~v~~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~ 252 (453)
T 2bju_A 216 TVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGW 252 (453)
T ss_dssp EETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred EEeCcEEEEEEEEEEEecccCccccccCCceeEeccC
Confidence 99998777666665422 4799999865
No 139
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=94.44 E-value=0.061 Score=39.25 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=49.4
Q ss_pred CEEEEEcCCCcEEEEEeC--CCccHHHHHHHHHHHhCCC-CcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCC
Q psy8018 1 MKVTVTSLDNECFLLDVS--EDLELENFKAFCEVQSGIS-AQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVAR 77 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~--~~~tV~~LK~~Ie~e~gip-~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~ 77 (280)
|+|+| +|+. ++++ +..||.+|.+. .|++ +..-.+..||..+.. ...+++-+++||.|.+.. .+.|
T Consensus 1 M~I~v---NGe~--~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr--~~~~~~~L~dGD~IEIv~-~VgG 68 (78)
T 2k5p_A 1 MNLTV---NGKP--STVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLER--EAFDATTVKDGDAVEFLY-FMGG 68 (78)
T ss_dssp CEEEE---TTEE--EECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCT--THHHHCEECSSBCEEECC-CCCC
T ss_pred CEEEE---CCEE--EEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEe-eecC
Confidence 77777 5664 4566 77899998775 4777 777778899999974 467777899999999876 3444
Q ss_pred C
Q psy8018 78 T 78 (280)
Q Consensus 78 ~ 78 (280)
.
T Consensus 69 G 69 (78)
T 2k5p_A 69 G 69 (78)
T ss_dssp S
T ss_pred C
Confidence 3
No 140
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=94.34 E-value=0.19 Score=43.49 Aligned_cols=91 Identities=16% Similarity=0.318 Sum_probs=58.9
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH--HHcCCccccccc----e------eeeeecCceeeEEeEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA--ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQ 212 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A--~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~ 212 (280)
...++++.|+ ++++++++|||+..+-+ +..|. ..|+-....+.. + -.+.+|-|+ ..|.+....
T Consensus 13 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~ 90 (239)
T 1b5f_A 13 TSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGS--ITGFFSQDS 90 (239)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCc--EEEEEEEEE
Confidence 4678999998 89999999999999877 44452 244322111111 1 113456564 478888889
Q ss_pred EEECCeEEE-eEEEEec--------CCCcccccchhh
Q psy8018 213 IAIENDFLT-TSFSVLE--------DQPMDMLLGLDM 240 (280)
Q Consensus 213 i~IG~~~~~-~~~~Vl~--------~~~~d~ILG~D~ 240 (280)
+.+|+..++ ..|.+.. ....|+||||-+
T Consensus 91 v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 127 (239)
T 1b5f_A 91 VTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSF 127 (239)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSC
T ss_pred EEECCcEEccEEEEEEEeccCccccccCcceEEecCc
Confidence 999987654 3443332 235789999864
No 141
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=94.28 E-value=0.17 Score=45.64 Aligned_cols=91 Identities=15% Similarity=0.261 Sum_probs=59.9
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH-HHcCCccccccc----e------eeeeecCceeeEEeEEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA-ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQI 213 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A-~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~i 213 (280)
...++++.|+ ++++++++|||+..+-+ +..|. ..|.-....+.. + -.+.+|-|+ ..|.+....+
T Consensus 14 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v 91 (323)
T 3cms_A 14 SQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS--MQGILGYDTV 91 (323)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCC--eEEEEEEEEE
Confidence 4678999998 79999999999999877 44441 334322111111 1 113455554 5788888899
Q ss_pred EECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 214 AIENDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 214 ~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
.+|+..++ ..|.+... ...|+||||-+
T Consensus 92 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 127 (323)
T 3cms_A 92 TVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAY 127 (323)
T ss_dssp EETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSC
T ss_pred EECCeEEeccEEEEEEecccccccccCCceEEecCc
Confidence 99997655 45655542 25789999864
No 142
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.25 E-value=0.18 Score=46.63 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=55.9
Q ss_pred EEEcCCCcEEEEEeCCCccHHHHHHHHHHHhC----CCCcceEEEE------CCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 4 TVTSLDNECFLLDVSEDLELENFKAFCEVQSG----ISAQEIAIEF------QGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 4 tV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~g----ip~~~Q~Li~------~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
.|... +.+.++..+|++||.+....|.++.. .++++--|.- +|+-|.++ +||+.||+++|+.|....+
T Consensus 7 ~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~-~~l~~y~~~~~~~l~~~~~ 84 (371)
T 3ivf_A 7 KISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAG-KALDYYMLRNGDTMEYRKK 84 (371)
T ss_dssp EEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred EEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCC-CCHHHhCCCCCceeeccCc
Confidence 34444 78889999999999999999987753 3677778877 56778765 8999999999999998765
No 143
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.20 E-value=0.23 Score=38.75 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=47.0
Q ss_pred CCcEEEEEeCCCccHHHHHHHHHHH--hCCC------CcceEEEE----CCeeeCCCc------------CCccccCCCC
Q psy8018 9 DNECFLLDVSEDLELENFKAFCEVQ--SGIS------AQEIAIEF----QGNALVDNK------------KTLKDYNIQD 64 (280)
Q Consensus 9 ~g~~~~leV~~~~tV~~LK~~Ie~e--~gip------~~~Q~Li~----~Gk~L~d~~------------~tL~~~gI~~ 64 (280)
++..+++.|-..+||.++|++|-.. .|.| +++..|-+ .|++|.|.+ .||+.|+|.|
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 3567888999999999999998765 3554 34666766 356665521 3799999999
Q ss_pred CCEEEEEEe
Q psy8018 65 GDLVLLKRV 73 (280)
Q Consensus 65 gd~l~l~~~ 73 (280)
|.+|-|+.+
T Consensus 102 gatl~l~~~ 110 (111)
T 4e71_A 102 GATLILSKV 110 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999998763
No 144
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=94.13 E-value=0.14 Score=46.41 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=60.0
Q ss_pred eEEEEEEEEcCEEEEEEEcCCCcceec-CHHHH-HHc--CCccccccc---e--e----eeeecCceeeEEeEEEEEEEE
Q psy8018 148 IMLYINCRVNGHPVKAFIDSGAQTTIM-SAACA-ARV--NITRLIDTR---W--A----GIAKGVGVQRIIGRIHMVQIA 214 (280)
Q Consensus 148 ~~l~i~~~InG~~v~alVDTGAq~tii-s~~~A-~rl--gL~~~~d~r---~--~----g~a~gvG~~~~~g~i~~~~i~ 214 (280)
...++++.|+++++++++|||+..+-+ +..|. ..| .-....+.. + . .+.+|-|+ ..|.+....+.
T Consensus 17 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~ST~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~ 94 (330)
T 1yg9_A 17 TQYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGS--AVGRGIEDSLT 94 (330)
T ss_dssp TTSEEEEEETTEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSCEEEEEEEEEEEETTTEE--EEEEEEEEEEE
T ss_pred CEEEEEEEECCEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCCceEECCCEEEEEECCce--EEEEEEEEEEE
Confidence 457899999999999999999998876 44453 245 322222211 1 1 12345454 37888888999
Q ss_pred ECCeEEE-eEEEEecC-------CCcccccchhh
Q psy8018 215 IENDFLT-TSFSVLED-------QPMDMLLGLDM 240 (280)
Q Consensus 215 IG~~~~~-~~~~Vl~~-------~~~d~ILG~D~ 240 (280)
+|+..++ ..|.+... ...|+||||-+
T Consensus 95 ig~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~ 128 (330)
T 1yg9_A 95 ISQLTTSQQDIVLADELSQEVCILSADVVVGIAA 128 (330)
T ss_dssp ETTEEEEEEEEEEEEEECTHHHHTTCSEEEECSC
T ss_pred ECCEEEcCeEEEEEEEcccccccccCceEEEcCc
Confidence 9997655 45555442 24799999875
No 145
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=94.07 E-value=0.12 Score=38.50 Aligned_cols=56 Identities=9% Similarity=0.182 Sum_probs=42.6
Q ss_pred CCcEEEEEeCCC-ccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 9 DNECFLLDVSED-LELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 9 ~g~~~~leV~~~-~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
+|+. +++++. .||.+|.+.+ ++++..-.+..||..+.. ....+.-+++||.|.+..
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~--~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK--ERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG--GGTTTSBCCSSSEEEEEE
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh--hhcCCcCCCCCCEEEEEc
Confidence 5654 456776 8999998865 677777778899999863 345566799999999876
No 146
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=93.87 E-value=0.49 Score=42.66 Aligned_cols=91 Identities=15% Similarity=0.321 Sum_probs=60.6
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH---HHcCCcccccc----ce------eeeeecCceeeEEeEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA---ARVNITRLIDT----RW------AGIAKGVGVQRIIGRIHMV 211 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A---~rlgL~~~~d~----r~------~g~a~gvG~~~~~g~i~~~ 211 (280)
...++++.|+ ++++++++|||+..+.+. ..|. ..|.-....+. .+ -.+.+|-|+ ..|.+...
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D 95 (341)
T 3k1w_A 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLSQD 95 (341)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEE
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcE--EEEEEEEE
Confidence 4678999998 699999999999988873 3342 23422211111 11 123455554 68988888
Q ss_pred EEEECCeEEEeEEEEecC--------CCcccccchhh
Q psy8018 212 QIAIENDFLTTSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 212 ~i~IG~~~~~~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
.+.+|+..+...|.+... ...|+||||-+
T Consensus 96 ~v~ig~~~v~~~fg~~~~~~~~~~~~~~~~GilGLg~ 132 (341)
T 3k1w_A 96 IITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 132 (341)
T ss_dssp EEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred EEEECCceeeEEEEEEEEccccccccCCcceEEECCc
Confidence 999999766666666542 24689999875
No 147
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=93.67 E-value=0.24 Score=45.37 Aligned_cols=91 Identities=16% Similarity=0.266 Sum_probs=60.8
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH--HHcCCccccccc----e------eeeeecCceeeEEeEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA--ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQ 212 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A--~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~ 212 (280)
...++++.|+ ++++++++|||+..+-+ +..|. ..|.-....+.. + -.+.+|-|+ ..|.+....
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~ 95 (361)
T 1mpp_A 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGG--ANGIYFRDS 95 (361)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECCce--EEEEEEEEE
Confidence 4678999998 89999999999999877 44553 256433222211 1 113355555 578888889
Q ss_pred EEECCeEEE-eEEEEec---C----------CCcccccchhh
Q psy8018 213 IAIENDFLT-TSFSVLE---D----------QPMDMLLGLDM 240 (280)
Q Consensus 213 i~IG~~~~~-~~~~Vl~---~----------~~~d~ILG~D~ 240 (280)
+.+|+..++ ..|.+.. + ...|+||||-+
T Consensus 96 v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~ 137 (361)
T 1mpp_A 96 ITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAY 137 (361)
T ss_dssp EEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSC
T ss_pred EEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCC
Confidence 999987654 3454443 1 25789999865
No 148
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=93.62 E-value=0.27 Score=44.95 Aligned_cols=92 Identities=17% Similarity=0.281 Sum_probs=61.1
Q ss_pred eeEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH-HHcCCccccccc----e------eeeeecCceeeEEeEEEEEE
Q psy8018 147 VIMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA-ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQ 212 (280)
Q Consensus 147 ~~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A-~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~ 212 (280)
....++++.|+ ++++++++|||+..+-+ +..|. ..|+-....+.. + -.+.+|-|+ ..|.+....
T Consensus 22 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~ 99 (351)
T 1tzs_A 22 DMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS--LSGIIGADQ 99 (351)
T ss_dssp SSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEEEEeCCCC--eEEEEEEeE
Confidence 34678999998 79999999999999877 44443 245432222211 1 113456554 568888889
Q ss_pred EEECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 213 IAIENDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 213 i~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
+.+|+..++ ..|.+... ...|+||||-+
T Consensus 100 v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 136 (351)
T 1tzs_A 100 VSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGY 136 (351)
T ss_dssp EEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred EEECCeEECCeEEEEEEeccccccccCCCceEEecCC
Confidence 999997665 56666542 24689999864
No 149
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=93.51 E-value=0.28 Score=44.26 Aligned_cols=91 Identities=20% Similarity=0.350 Sum_probs=59.3
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHHH-HcCCccccccc----e------eeeeecCceeeEEeEEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACAA-RVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQI 213 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A~-rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~i 213 (280)
...++++.|+ ++++++++|||+..+-+ +..|.. .|.-....+.. + -.+.+|-| ...|.+....+
T Consensus 13 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G--s~~G~~~~D~v 90 (329)
T 1dpj_A 13 AQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTG--SLEGYISQDTL 90 (329)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTE--EEEEEEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECCcEEEEEECCc--eEEEEEEEEEE
Confidence 4578999998 89999999999998877 344432 23211111111 1 12345655 46788888899
Q ss_pred EECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 214 AIENDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 214 ~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
.+|+..++ ..|.+... ...|+||||-+
T Consensus 91 ~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 126 (329)
T 1dpj_A 91 SIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGY 126 (329)
T ss_dssp EETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSC
T ss_pred EECCeEECCeEEEEEEecCccccccCCcceEEEeCC
Confidence 99987655 45555432 25799999865
No 150
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=93.47 E-value=0.22 Score=45.18 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=57.7
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecCHHHHHHcCCcccccccee----eeeecCceeeEEeEEEEEEEEECCeEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWA----GIAKGVGVQRIIGRIHMVQIAIENDFLT 221 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~----g~a~gvG~~~~~g~i~~~~i~IG~~~~~ 221 (280)
...++++.|+ ++++++++|||+..+-+... ..+.-. ...... .+.+|-|+ ..|.+....+.+|+..++
T Consensus 12 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~~s--~Ss~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~~g~~~v~ 85 (340)
T 1wkr_A 12 VDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYVKT--STSSATSDKVSVTYGSGS--FSGTEYTDTVTLGSLTIP 85 (340)
T ss_dssp SCEEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCCCC--TTCEEEEEEEEEECSSCE--EEEEEEEEEEEETTEEEE
T ss_pred cEEEEEEEECCCCcEEEEEEeCCChhheecCC--CccCCc--CCccccCceEEEEECCcE--EEEEEEEEEEEECCEEEc
Confidence 3578999998 89999999999999887521 112111 011111 23456664 569998889999987654
Q ss_pred -eEEEEecC----CCcccccchhh
Q psy8018 222 -TSFSVLED----QPMDMLLGLDM 240 (280)
Q Consensus 222 -~~~~Vl~~----~~~d~ILG~D~ 240 (280)
..|.+... ...|+||||-+
T Consensus 86 ~~~fg~~~~~~~~~~~~GilGLg~ 109 (340)
T 1wkr_A 86 KQSIGVASRDSGFDGVDGILGVGP 109 (340)
T ss_dssp EEEEEEEEEEESCTTCSEEEECSC
T ss_pred ceEEEEEEccCCCcCCCcEEECCc
Confidence 45555442 25789999865
No 151
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=93.27 E-value=0.41 Score=43.15 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=59.1
Q ss_pred eEEEEEEEEcCEEEEEEEcCCCcceecC-HHHHH-HcCCcccccc-----cee----eeeecCceeeEEeEEEEEEEEEC
Q psy8018 148 IMLYINCRVNGHPVKAFIDSGAQTTIMS-AACAA-RVNITRLIDT-----RWA----GIAKGVGVQRIIGRIHMVQIAIE 216 (280)
Q Consensus 148 ~~l~i~~~InG~~v~alVDTGAq~tiis-~~~A~-rlgL~~~~d~-----r~~----g~a~gvG~~~~~g~i~~~~i~IG 216 (280)
...++++.|+++++.+++|||++.+-+. ..|.. .|.-....+. +.. .+.+|-|+ ...|.+....+.+|
T Consensus 15 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~ig 93 (323)
T 1bxo_A 15 EEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGS-SASGNVFTDSVTVG 93 (323)
T ss_dssp SCEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHCEEEEEEEEEEECTTSC-EEEEEEEEEEEEET
T ss_pred CEEEEEEEECCEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCCcccCCCeEEEEeCCCC-eEEEEEEEEEEEEC
Confidence 4578999999999999999999998874 33321 1211111111 001 13345443 45788888899999
Q ss_pred CeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 217 NDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 217 ~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
+..++ ..|.+... ...|+||||-+
T Consensus 94 ~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 126 (323)
T 1bxo_A 94 GVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAF 126 (323)
T ss_dssp TEEEEEEEEEEEEEECHHHHTCTTCSEEEECSC
T ss_pred CEEECcEEEEEEEecCcccccCCCCceEEEeCc
Confidence 87654 45555442 36799999866
No 152
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.10 E-value=0.18 Score=37.51 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=52.6
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC---CeeeCCCcCCccccCCCC
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ---GNALVDNKKTLKDYNIQD 64 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~---Gk~L~d~~~tL~~~gI~~ 64 (280)
++.|....-+.+.+-|+|..++.+|--.|-+++.+.++.-.|... +.+|. -+++|.+|||++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~Ld-LskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLD-LTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCC-TTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccc-hhcchhhhhhhh
Confidence 456667777888899999999999999999999999999998753 45564 458999999998
No 153
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=93.09 E-value=0.47 Score=42.81 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=59.8
Q ss_pred eeEEEEEEEEcCEEEEEEEcCCCcceecC-HHHHH-HcCCcccccc-----ceee----eeecCceeeEEeEEEEEEEEE
Q psy8018 147 VIMLYINCRVNGHPVKAFIDSGAQTTIMS-AACAA-RVNITRLIDT-----RWAG----IAKGVGVQRIIGRIHMVQIAI 215 (280)
Q Consensus 147 ~~~l~i~~~InG~~v~alVDTGAq~tiis-~~~A~-rlgL~~~~d~-----r~~g----~a~gvG~~~~~g~i~~~~i~I 215 (280)
....++++.|+++++++++|||+..+-+. ..|.. .|.-....+. +..+ +.+|-|+ ...|.+....+.+
T Consensus 14 ~~~Y~~~i~iG~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~i 92 (323)
T 1izd_A 14 DEEYITQVTVGDDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSAQKIDGATWSISYGDGS-SASGDVYKDKVTV 92 (323)
T ss_dssp GCCEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTCEEEEEEEEEEECTTSC-EEEEEEEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccCCccCCCeEEEEcCCCC-eEEEEEEEEEEEE
Confidence 35678999999999999999999998874 33321 1211111111 1111 2345443 3578888889999
Q ss_pred CCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 216 ENDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 216 G~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
|+..++ ..|.+... ...|+||||-+
T Consensus 93 g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 126 (323)
T 1izd_A 93 GGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAF 126 (323)
T ss_dssp TTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred CCEEECceEEEEEEeccccccccCCCceEEecCc
Confidence 987665 45555542 36799999876
No 154
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=93.07 E-value=0.21 Score=34.70 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=45.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
|+|+| +|+. +++++..||.+|.+.+ ++++..-.+..||+.+.. ....+.-+++||.|.+..
T Consensus 1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR--EQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH--HHHTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc--hhcCCcCCCCCCEEEEEe
Confidence 66665 5554 4667888999998876 567777778889999863 234445799999998876
No 155
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=93.04 E-value=0.48 Score=42.71 Aligned_cols=92 Identities=13% Similarity=0.276 Sum_probs=60.1
Q ss_pred eeEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH-HHcCCccccccc----e--e----eeeecCceeeEEeEEEEEE
Q psy8018 147 VIMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA-ARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQ 212 (280)
Q Consensus 147 ~~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A-~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~ 212 (280)
....++++.|+ ++++++++|||+..+-+ +..|. ..|+-....+.. + . .+.+|-|+ ..|.+....
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~ 88 (329)
T 1htr_B 11 DAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYGSGS--LTGFFGYDT 88 (329)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEECCcEEEEEeCCCC--eEEEEEeee
Confidence 35678999998 79999999999998877 34442 123221111111 1 1 13355554 378888889
Q ss_pred EEECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 213 IAIENDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 213 i~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
+.+|+..++ ..|.+... ...|+||||-+
T Consensus 89 v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (329)
T 1htr_B 89 LTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAY 125 (329)
T ss_dssp EEETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCC
T ss_pred EEEcceEECceEEEEEEEccccccccCCCceEEecCC
Confidence 999997665 56666642 24689999864
No 156
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=92.79 E-value=0.69 Score=41.36 Aligned_cols=91 Identities=14% Similarity=0.239 Sum_probs=58.9
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH-HHcCCcccccc----ce------eeeeecCceeeEEeEEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA-ARVNITRLIDT----RW------AGIAKGVGVQRIIGRIHMVQI 213 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A-~rlgL~~~~d~----r~------~g~a~gvG~~~~~g~i~~~~i 213 (280)
...++++.|+ .+++++++|||+..+.+. ..|. ..|.-....+. .+ -.+.+|-|+ ..|.+....+
T Consensus 11 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~v 88 (320)
T 4aa9_A 11 SQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS--MEGFLGYDTV 88 (320)
T ss_dssp CCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcE--EEEEEEEEEE
Confidence 4578999998 799999999999988884 3332 12221111111 11 113455554 5788888899
Q ss_pred EECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 214 AIENDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 214 ~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
.+|+..++ ..|.+... ...|+||||-+
T Consensus 89 ~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 124 (320)
T 4aa9_A 89 TVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAY 124 (320)
T ss_dssp EETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSC
T ss_pred EECCEeecCeEEEEEEEcccccccccCcccEEecCc
Confidence 99997665 45655542 24689999964
No 157
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=92.73 E-value=0.53 Score=43.47 Aligned_cols=92 Identities=16% Similarity=0.300 Sum_probs=61.0
Q ss_pred eeEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHH-HcCCccccccc----e--e----eeeecCceeeEEeEEEEEE
Q psy8018 147 VIMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAA-RVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQ 212 (280)
Q Consensus 147 ~~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~-rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~ 212 (280)
....++++.|+ .+++++++|||++.+-+. ..|.. .|......+.. + . .+.+|-|+ ..|.+....
T Consensus 55 d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dt 132 (370)
T 3psg_A 55 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGS--MTGILGYDT 132 (370)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCE--EEEEEEEEE
T ss_pred CCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCce--EEEEEEEEE
Confidence 45689999998 589999999999988774 33421 23322222111 1 1 13355554 588888889
Q ss_pred EEECCeEEE-eEEEEecCC--------Ccccccchhh
Q psy8018 213 IAIENDFLT-TSFSVLEDQ--------PMDMLLGLDM 240 (280)
Q Consensus 213 i~IG~~~~~-~~~~Vl~~~--------~~d~ILG~D~ 240 (280)
+.+|+..++ ..|.+.... ..|+||||-+
T Consensus 133 v~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~ 169 (370)
T 3psg_A 133 VQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 169 (370)
T ss_dssp EEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred EeeCCcccCCeEEEEEEeecccccccCCccceeccCC
Confidence 999998766 566665422 4799999964
No 158
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=92.65 E-value=0.35 Score=43.68 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=58.6
Q ss_pred eEEEEEEEEcCEEEEEEEcCCCcceecC-HHHHH-HcCCccccccc---------eeeeeecCceeeEEeEEEEEEEEEC
Q psy8018 148 IMLYINCRVNGHPVKAFIDSGAQTTIMS-AACAA-RVNITRLIDTR---------WAGIAKGVGVQRIIGRIHMVQIAIE 216 (280)
Q Consensus 148 ~~l~i~~~InG~~v~alVDTGAq~tiis-~~~A~-rlgL~~~~d~r---------~~g~a~gvG~~~~~g~i~~~~i~IG 216 (280)
...++++.|+++++++++|||+..+-+. ..|.. .|.-....+.. .-.+.+|-|+ ...|.+....+.+|
T Consensus 14 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~ig 92 (325)
T 1ibq_A 14 EEYLTPVTVGKSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSATKLSGYSWDISYGDGS-SASGDVYRDTVTVG 92 (325)
T ss_dssp SCEEEEEEEBTEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSCEECTTCBEEEECSSSC-EEEEEEEEEEEEET
T ss_pred CEEEEEEEECCEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcCCccCCCEEEEEeCCCC-EEEEEEEEeEEEEC
Confidence 4578999999999999999999998774 33321 12111111110 0123345443 35788888899999
Q ss_pred CeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 217 NDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 217 ~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
+..++ ..|.+... ...|+||||-+
T Consensus 93 ~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (325)
T 1ibq_A 93 GVTTNKQAVEAASKISSEFVQDTANDGLLGLAF 125 (325)
T ss_dssp TEEEEEEEEEEEEEECHHHHTSTTCCEEEECSC
T ss_pred CEEEcceEEEEEEecCccccccCCCceEEEeCc
Confidence 87655 45555432 36799999865
No 159
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=92.39 E-value=0.78 Score=43.80 Aligned_cols=103 Identities=7% Similarity=0.066 Sum_probs=62.1
Q ss_pred EEEcCE---EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCcee--eE-EeEEEEEEEEECCeEEE------
Q psy8018 154 CRVNGH---PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQ--RI-IGRIHMVQIAIENDFLT------ 221 (280)
Q Consensus 154 ~~InG~---~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~--~~-~g~i~~~~i~IG~~~~~------ 221 (280)
+.|+|. ...|+||||.+.+.++.+.++++-=. +...+. ...|.- .. ........+.+|+..++
T Consensus 322 I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~--i~a~~~---~~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~y 396 (451)
T 3qvc_A 322 VHFGNVSSKKANVILDSATSVITVPTEFFNQFVES--ASVFKV---PFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQY 396 (451)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTT--TTCEEC---TTSSCEEEETTCTTCCCEEEEETTEEEEECHHHH
T ss_pred EEECCccCCCceEEEeCCCccccCCHHHHHHHHHH--cCCeec---CCCCeEEeeCCcCcCCcEEEEECCEEEEEcHHHh
Confidence 567774 57799999999999999988876211 110000 000100 00 00112234555654332
Q ss_pred -----------eEEEEecCC--CcccccchhhhhcceEEEEecccEEEeeeee
Q psy8018 222 -----------TSFSVLEDQ--PMDMLLGLDMLKRHQVQIAIENDFLTTSFSV 261 (280)
Q Consensus 222 -----------~~~~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~ 261 (280)
|-+.+.... ....|||..||+.+-.+.|+.++++-+...+
T Consensus 397 i~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 397 LEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp EEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred eeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 322232222 2458999999999999999999999987653
No 160
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=92.39 E-value=0.53 Score=45.29 Aligned_cols=92 Identities=18% Similarity=0.287 Sum_probs=60.4
Q ss_pred eeEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH--HHcCCccccccc----e------eeeeecCceeeEEeEEEEE
Q psy8018 147 VIMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA--ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMV 211 (280)
Q Consensus 147 ~~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A--~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~ 211 (280)
....++++.|+ ++++.+++|||++.+-+ +..|. ..|......+.. + -.+.+|-|+ ..|.+...
T Consensus 51 ~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D 128 (478)
T 1qdm_A 51 NAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGS--IAGYFSED 128 (478)
T ss_dssp GCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEE--EEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCC--eEEEEEEE
Confidence 35688999998 79999999999998877 44453 344322111111 1 123456554 57888888
Q ss_pred EEEECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 212 QIAIENDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 212 ~i~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
.+.+|+..++ ..|.+... ...|+||||-+
T Consensus 129 tv~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~ 166 (478)
T 1qdm_A 129 SVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGF 166 (478)
T ss_dssp EEEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSC
T ss_pred EEEECCeEECCEEEEEEEecCCcccccccccceecccc
Confidence 9999997655 34544431 24699999865
No 161
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.33 E-value=0.57 Score=37.85 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=47.4
Q ss_pred cEEEEEeCCCccHHHHHHHHHHHh--CCCC------cceEEEE----CCee-eCCCc------------CCccccCCCCC
Q psy8018 11 ECFLLDVSEDLELENFKAFCEVQS--GISA------QEIAIEF----QGNA-LVDNK------------KTLKDYNIQDG 65 (280)
Q Consensus 11 ~~~~leV~~~~tV~~LK~~Ie~e~--gip~------~~Q~Li~----~Gk~-L~d~~------------~tL~~~gI~~g 65 (280)
+.+++.|-..+||.++|++|-... |.|. ++.-|-+ .|+. |.|.+ .||+.|+|.||
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 568899999999999999997763 5544 3455654 3443 65421 28999999999
Q ss_pred CEEEEEEec
Q psy8018 66 DLVLLKRVQ 74 (280)
Q Consensus 66 d~l~l~~~~ 74 (280)
.+|.|+.++
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999998874
No 162
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=92.16 E-value=0.12 Score=39.22 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=40.6
Q ss_pred EEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeee--eecCceeeEEeEEEEEEEEECCeEEEeE
Q psy8018 152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGI--AKGVGVQRIIGRIHMVQIAIENDFLTTS 223 (280)
Q Consensus 152 i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~--a~gvG~~~~~g~i~~~~i~IG~~~~~~~ 223 (280)
+.++|-|...++.-||||+.|+|...+-+ +....|. ..-+-+. ..-.+.-..++|.|+.+.+.
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~--------~E~PI~~~~I~TIHG~-k~q~vYYl~fKv~GRKveaE 74 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLE--------DERPIQTMLIKTIHGE-KQQDVYYLTFKVQGRKVEAE 74 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTT--------TCCCSEEEEEECSSCE-EEEEEEEEEEEESSCEEEEE
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhc--------ccccccceEEEEecCc-eeceEEEEEEEEcCeEEEEE
Confidence 78999999999999999999999988733 2222121 1112111 12223344788888776653
No 163
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.15 E-value=0.72 Score=32.63 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=44.0
Q ss_pred CEEEEEcC---CCcEEEEEeCCCccHHHHHHHHHHHhCCCC--cceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 1 MKVTVTSL---DNECFLLDVSEDLELENFKAFCEVQSGISA--QEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 1 M~ItV~~~---~g~~~~leV~~~~tV~~LK~~Ie~e~gip~--~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
|+|+|+.. .. -++++ +..||.+|.+.+....++.. ..-.+.-||+.+.+. +.-+++||.|.+..
T Consensus 1 M~v~V~~fa~l~~--~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~-----~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 1 MMVEVRFFGPIKE--ENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL-----NTPLKDGDVISLLP 69 (74)
T ss_dssp CEEEEEECTTCCC--CCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT-----TCCCCTTCEEEEEC
T ss_pred CEEEEEEEeecce--eEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC-----CcCCCCCCEEEEEC
Confidence 88999842 23 34677 66899999999986543322 344566789886532 34599999998865
No 164
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=92.09 E-value=0.49 Score=42.72 Aligned_cols=90 Identities=11% Similarity=0.101 Sum_probs=58.3
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecCH-HHHHHc---CCcccccc-----------ceeeeeecCceeeEEeEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSA-ACAARV---NITRLIDT-----------RWAGIAKGVGVQRIIGRIHM 210 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~-~~A~rl---gL~~~~d~-----------r~~g~a~gvG~~~~~g~i~~ 210 (280)
...++++.|+ ++++++++|||+..+-+.. .|. .| +.... +. ..-.+.+|-|+ ...|.+..
T Consensus 15 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~~~~~~~y-~~~~SsT~~~~~~~~~~i~Yg~Gs-~~~G~~~~ 91 (329)
T 3c9x_A 15 SEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETP-KSSATGHAIY-TPSKSSTSKKVSGASWSISYGDGS-SSSGDVYT 91 (329)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC-HHHHTTSCCB-CGGGCTTCEECTTCBEEEECTTSC-EEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCC-ccccCCCCcC-CcccCcCceEcCCCeEEEEeCCCC-cEEEEEEE
Confidence 4578999998 9999999999999988753 332 12 11111 11 00123345443 35788888
Q ss_pred EEEEECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 211 VQIAIENDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 211 ~~i~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
..+.+|+..++ ..|.+... ...|+||||-+
T Consensus 92 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 130 (329)
T 3c9x_A 92 DKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAF 130 (329)
T ss_dssp EEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred EEEEECCEEEcceEEEEEEecCccccccCCCceeEEeCc
Confidence 89999987654 35555431 46799999865
No 165
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=92.07 E-value=0.72 Score=41.63 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=58.5
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecCH-HHHHHc--CCccccc---cce---ee----eeecCceeeEEeEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSA-ACAARV--NITRLID---TRW---AG----IAKGVGVQRIIGRIHMVQ 212 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~-~~A~rl--gL~~~~d---~r~---~g----~a~gvG~~~~~g~i~~~~ 212 (280)
...++++.|+ ++++.+++|||+..+-+.. .|. .| +-...-. ..+ .+ +.+|-|+ ...|.+....
T Consensus 15 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs-~~~G~~~~D~ 92 (329)
T 1oew_A 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT-ASEVXQTIYTPSKSTTAKLLSGATWSISYGDGS-SSSGDVYTDT 92 (329)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC-GGGC-CCCBCGGGCTTCEEEEEEEEEEECTTSC-EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCC-ccccccCccCCccCccceecCCCeEEEEeCCCC-cEEEEEEEEE
Confidence 4578999998 9999999999999988753 332 23 1111110 101 11 2344443 4578888889
Q ss_pred EEECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 213 IAIENDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 213 i~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
+.+|+..++ ..|.+... ...|+||||-+
T Consensus 93 v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 129 (329)
T 1oew_A 93 VSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAF 129 (329)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred EEECCEEEeeeEEEEEEecCccccccCCCceEEEecc
Confidence 999987655 45555431 46799999865
No 166
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=92.00 E-value=0.52 Score=42.39 Aligned_cols=102 Identities=11% Similarity=0.153 Sum_probs=59.7
Q ss_pred EEEEcCEEE------EEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE-
Q psy8018 153 NCRVNGHPV------KAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT- 221 (280)
Q Consensus 153 ~~~InG~~v------~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~- 221 (280)
.+.|||..+ .++||||.+.+.++.+.++++ +-.......+ ...-... .......+.+|+..+.
T Consensus 197 ~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~---~~~C~~~---~~~P~i~f~f~g~~~~i 270 (323)
T 3cms_A 197 SVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEF---DIDCDNL---SYMPTVVFEINGKMYPL 270 (323)
T ss_dssp EEEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTTEE---EECTTCT---TTSCCEEEEETTEEEEE
T ss_pred eEEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCeecCCCcE---EEECCCC---ccCceEEEEECCEEEEE
Confidence 456788754 699999999999998877765 2211000000 0000000 0011234455554332
Q ss_pred ------------eEEEEecC-CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 222 ------------TSFSVLED-QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 222 ------------~~~~Vl~~-~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
|-+.+... .....|||..||+.+-++.|+.+++|-|...
T Consensus 271 ~~~~y~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~ 322 (323)
T 3cms_A 271 TPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKA 322 (323)
T ss_dssp CHHHHEEEETTEEEESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred CHHHhccCCCCEEEEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEEEC
Confidence 33223222 2345899999999999999999999988754
No 167
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=91.97 E-value=0.33 Score=43.83 Aligned_cols=92 Identities=14% Similarity=0.180 Sum_probs=60.5
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecCHH---HHH--HcCCccccccc----e--e----eeeecCceeeEEeEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSAA---CAA--RVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHM 210 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~~---~A~--rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~ 210 (280)
...++++.|+ ++++++++|||+..+-+... |.. .|.-....+.. + . .+.+|-| ....|.+..
T Consensus 12 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~~G~~~~ 90 (339)
T 3fv3_A 12 PSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDG-STSQGTWGK 90 (339)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTS-CEEEEEEEE
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCC-ceEEEEEEE
Confidence 4578999998 89999999999999888532 432 23221111111 1 1 1234444 356888888
Q ss_pred EEEEECCeEEE-eEEEEec-CCCcccccchhh
Q psy8018 211 VQIAIENDFLT-TSFSVLE-DQPMDMLLGLDM 240 (280)
Q Consensus 211 ~~i~IG~~~~~-~~~~Vl~-~~~~d~ILG~D~ 240 (280)
..+.+|+..++ ..|.+.. ....|+||||-+
T Consensus 91 D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~ 122 (339)
T 3fv3_A 91 DTVTINGVSITGQQIADVTQTSVDQGILGIGY 122 (339)
T ss_dssp EEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEECCEEECceEEEEEEecCCCceeEEecC
Confidence 89999998766 5666654 235789999865
No 168
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=91.92 E-value=0.38 Score=43.43 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=60.2
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecCHH---HH--------HHcCCccccccc----e--e----eeeecCceeeE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSAA---CA--------ARVNITRLIDTR----W--A----GIAKGVGVQRI 204 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~~---~A--------~rlgL~~~~d~r----~--~----g~a~gvG~~~~ 204 (280)
...++++.|+ ++++++++|||+..+-+... |. ..|.-....+.. + . .+.+|-| ...
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~ 90 (342)
T 3pvk_A 12 VTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDG-SSS 90 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECSSS-CEE
T ss_pred cEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEEEEecCC-CeE
Confidence 4578999998 89999999999999887422 41 233211111111 1 1 1234444 346
Q ss_pred EeEEEEEEEEECCeEEE-eEEEEec-CCCcccccchhh
Q psy8018 205 IGRIHMVQIAIENDFLT-TSFSVLE-DQPMDMLLGLDM 240 (280)
Q Consensus 205 ~g~i~~~~i~IG~~~~~-~~~~Vl~-~~~~d~ILG~D~ 240 (280)
.|.+....+.+|+..++ ..|.+.. ....|+||||-+
T Consensus 91 ~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~GilGLg~ 128 (342)
T 3pvk_A 91 QGTLYKDTVGFGGVSIKNQVLADVDSTSIDQGILGVGY 128 (342)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEEEEEEEECCEEecceEEEEEEccCCCccEEEecC
Confidence 78888889999997765 5666655 236799999975
No 169
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=91.86 E-value=0.65 Score=41.83 Aligned_cols=91 Identities=19% Similarity=0.334 Sum_probs=57.8
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHHc-CCccccccc----e--e----eeeecCceeeEEeEEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAARV-NITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQI 213 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~rl-gL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~i 213 (280)
...++++.|+ ++++.+++|||+..+-+. ..|. .| .-....+.. + . .+.+|-| ....|.+....+
T Consensus 15 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~-~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~G-s~~~G~~~~D~v 92 (325)
T 2apr_A 15 IEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT-NCGSGQTKYDPNQSSTYQADGRTWSISYGDG-SSASGILAKDNV 92 (325)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCS-SCCTTSCCBCGGGCTTCEEEEEEEEEECTTS-CEEEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCc-hHhcCCCCCCcccCCCeeeCCCEEEEEECCC-CCEEEEEEEEEE
Confidence 4578999999 999999999999998774 3342 23 111111111 1 1 1234444 345788888899
Q ss_pred EECCeEEE-eEEEEecC-------CCcccccchhh
Q psy8018 214 AIENDFLT-TSFSVLED-------QPMDMLLGLDM 240 (280)
Q Consensus 214 ~IG~~~~~-~~~~Vl~~-------~~~d~ILG~D~ 240 (280)
.+|+..++ ..|.+... ...|+||||-+
T Consensus 93 ~~g~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~ 127 (325)
T 2apr_A 93 NLGGLLIKGQTIELAKREAASFASGPNDGLLGLGF 127 (325)
T ss_dssp EETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSC
T ss_pred EECCEEECcEEEEEEeccCcccccCCCceEEEeCC
Confidence 99987654 34544431 23899999864
No 170
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=91.71 E-value=0.42 Score=42.98 Aligned_cols=91 Identities=16% Similarity=0.284 Sum_probs=58.2
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH-HHcCCccccccc----e--e----eeeecCceeeEEeEEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA-ARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQI 213 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A-~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~i 213 (280)
...++++.|+ ++++.+++|||+..+-+. ..|. ..|.-....+.. + . .+.+|-|+. .|.+....+
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~--~G~~~~D~v 89 (324)
T 1am5_A 12 TEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGM--RGILGQDTV 89 (324)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEE--EEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeCCcEEEEEECCCCe--EEEEEECce
Confidence 4678999997 699999999999998774 3342 123221111111 1 1 133555543 788888899
Q ss_pred EECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018 214 AIENDFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 214 ~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
.+|+..++ ..|.+... ...|+||||-+
T Consensus 90 ~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (324)
T 1am5_A 90 SVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAY 125 (324)
T ss_dssp ESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSC
T ss_pred eECCcEEcccEEEEEEecccccccCCCCceEEecCC
Confidence 99986554 45555432 25789999865
No 171
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=91.68 E-value=0.57 Score=41.91 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=59.3
Q ss_pred EEEcCEE------EEEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE--
Q psy8018 154 CRVNGHP------VKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT-- 221 (280)
Q Consensus 154 ~~InG~~------v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-- 221 (280)
+.|||.. ..++||||.+.+.++.+.++++ +........+ ...-... .......+.+|+..+.
T Consensus 195 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g~~---~~~C~~~---~~~p~i~f~f~g~~~~l~ 268 (320)
T 4aa9_A 195 VTINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEF---DVNCGNL---RSMPTVVFEINGRDYPLS 268 (320)
T ss_dssp EEETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEECTTSCE---EECGGGG---GGCCCEEEEETTEEEEEC
T ss_pred EEECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHHhCCcccCCCcE---EEeCCCC---CcCceEEEEECCEEEEEC
Confidence 5678864 4699999999999998877765 2211000000 0000000 0011234445554322
Q ss_pred -----------eEEEEec-CCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 222 -----------TSFSVLE-DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 222 -----------~~~~Vl~-~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
|-+.+.. ..+...|||..||+.+-.+.|+.++++-|...
T Consensus 269 ~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a 319 (320)
T 4aa9_A 269 PSAYTSKDQGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLAKA 319 (320)
T ss_dssp HHHHEEEETTEEEESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred HHHhccCCCCeEEEEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEEec
Confidence 3332332 22334899999999999999999999988754
No 172
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=91.50 E-value=0.7 Score=39.60 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=58.3
Q ss_pred EEEEcCEE------EEEEEcCCCcceecCHHHHHHcCCccccccce--eee-eecCceeeEEeEEEEEEEEECCeEE---
Q psy8018 153 NCRVNGHP------VKAFIDSGAQTTIMSAACAARVNITRLIDTRW--AGI-AKGVGVQRIIGRIHMVQIAIENDFL--- 220 (280)
Q Consensus 153 ~~~InG~~------v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~--~g~-a~gvG~~~~~g~i~~~~i~IG~~~~--- 220 (280)
.+.|||.. ..+++|||.+.+.++.+.++++-= .+.... .|. ....... .......+.+|+..+
T Consensus 107 ~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~--~~~~~~~~~g~~~~~C~~~---~~~p~i~f~f~g~~~~l~ 181 (241)
T 1lya_B 107 QVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQK--AIGAVPLIQGEYMIPCEKV---STLPAITLKLGGKGYKLS 181 (241)
T ss_dssp EEEETTSCEESTTCEEEEECTTCSSEEECHHHHHHHHH--HHTCEEEETTEEEEEGGGG---GGSCCEEEEETTEEEEEC
T ss_pred EEEECCeeEeccCCCEEEEECCCccccCCHHHHHHHHH--HhCCeeccCCcEEEECCCC---ccCCeEEEEECCEEEEEC
Confidence 35577754 479999999999999988776511 011110 000 0000000 001112333443222
Q ss_pred --------------EeEEEEecC-----CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 221 --------------TTSFSVLED-----QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 221 --------------~~~~~Vl~~-----~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
.|-+.+... .....|||-.||+.+-.+.|+.++++-|...
T Consensus 182 ~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~~ 240 (241)
T 1lya_B 182 PEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEA 240 (241)
T ss_dssp TTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred HHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEEEEECCCCEEEEEEc
Confidence 133222221 2345899999999999999999999988754
No 173
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=91.05 E-value=0.43 Score=43.18 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=60.8
Q ss_pred EEEcCEE-----EEEEEcCCCcceecCHHHHHHcCCccccccce--ee---e-eecCceeeEEeEEEEEEEEECCeEEE-
Q psy8018 154 CRVNGHP-----VKAFIDSGAQTTIMSAACAARVNITRLIDTRW--AG---I-AKGVGVQRIIGRIHMVQIAIENDFLT- 221 (280)
Q Consensus 154 ~~InG~~-----v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~--~g---~-a~gvG~~~~~g~i~~~~i~IG~~~~~- 221 (280)
+.|+|.. ..|+||||.+.+.++.+.++++--. +.... .| . ...-.. ........+.+|+..++
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~--~~~~~~~~g~~~~~~~~C~~---~~~~p~i~f~fgg~~~~l 276 (330)
T 1yg9_A 202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEA--IGCVVEKTTTRRICKLDCSK---IPSLPDVTFVINGRNFNI 276 (330)
T ss_dssp EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHH--HTCEEEECSSCEEEEECGGG---GGGSCCEEEEETTEEEEE
T ss_pred EEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHH--hCCcccCCCceEEEEEECCC---ccccCcEEEEECCEEEEE
Confidence 5678875 4699999999999999887765210 11110 01 0 000000 00012234555654332
Q ss_pred ------------eEEEEec-CCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 222 ------------TSFSVLE-DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 222 ------------~~~~Vl~-~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
|-+.+.. ......|||-.||+.+-.+.|+.+++|-|...
T Consensus 277 ~~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~ 328 (330)
T 1yg9_A 277 SSQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRS 328 (330)
T ss_dssp CHHHHEEEETTEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred CHHHhcccCCCcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEEC
Confidence 3333322 12345899999999999999999999988765
No 174
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.04 E-value=1.2 Score=33.29 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=46.0
Q ss_pred CEEEEEc-------CCCcEEEEEeCCCccHHHHHHHHHHHhC-C----------CCcceEEEECCeeeCCCcCCccccCC
Q psy8018 1 MKVTVTS-------LDNECFLLDVSEDLELENFKAFCEVQSG-I----------SAQEIAIEFQGNALVDNKKTLKDYNI 62 (280)
Q Consensus 1 M~ItV~~-------~~g~~~~leV~~~~tV~~LK~~Ie~e~g-i----------p~~~Q~Li~~Gk~L~d~~~tL~~~gI 62 (280)
|+|+|+. .+....++++++..||.+|.+.+..... + ....-.+..||+.... ++-+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------~~~L 83 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------DEEL 83 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------TCBC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC------CCCC
Confidence 6788872 2234668899888999999999887631 1 1233456678887753 3469
Q ss_pred CCCCEEEEEE
Q psy8018 63 QDGDLVLLKR 72 (280)
Q Consensus 63 ~~gd~l~l~~ 72 (280)
++||.|.+..
T Consensus 84 ~dGDeV~i~p 93 (98)
T 1vjk_A 84 KDGDVVGVFP 93 (98)
T ss_dssp CTTCEEEEES
T ss_pred CCCCEEEEEC
Confidence 9999998864
No 175
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=90.96 E-value=0.43 Score=43.17 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=59.6
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecCH---HHHH--------HcCCccccccc----e--e----eeeecCceeeE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSA---ACAA--------RVNITRLIDTR----W--A----GIAKGVGVQRI 204 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~---~~A~--------rlgL~~~~d~r----~--~----g~a~gvG~~~~ 204 (280)
...++++.|+ ++++++++|||+..+-+.. .|.. .|.-....+.. + . .+.+|-|+ ..
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~~ 90 (334)
T 1j71_A 12 PSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLT-SS 90 (334)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTSC-EE
T ss_pred cEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceEEEECCCC-EE
Confidence 4578999998 8999999999999998843 3431 34322112211 1 1 12344443 35
Q ss_pred EeEEEEEEEEECCeEEE-eEEEEec-CCCcccccchhh
Q psy8018 205 IGRIHMVQIAIENDFLT-TSFSVLE-DQPMDMLLGLDM 240 (280)
Q Consensus 205 ~g~i~~~~i~IG~~~~~-~~~~Vl~-~~~~d~ILG~D~ 240 (280)
.|.+....+.+|+..++ ..|.+.. ....|+||||-+
T Consensus 91 ~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~GilGLg~ 128 (334)
T 1j71_A 91 QGSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGIGF 128 (334)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEEEEEEEECCEEEccEEEEEEEecCCCccEEEEcC
Confidence 68888889999987654 4555554 236899999875
No 176
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=90.88 E-value=0.48 Score=42.97 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=59.5
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecCH---HHH--------HHcCCccccccc----e--e----eeeecCceeeE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSA---ACA--------ARVNITRLIDTR----W--A----GIAKGVGVQRI 204 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~---~~A--------~rlgL~~~~d~r----~--~----g~a~gvG~~~~ 204 (280)
...++++.|+ ++++++++|||+..+-+.. .|. ..|.-....+.. + . .+.+|-| ...
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G-s~~ 90 (342)
T 2qzx_A 12 ITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDG-SYA 90 (342)
T ss_dssp SCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTS-CEE
T ss_pred eEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEEEEeCCC-CeE
Confidence 4678999998 8999999999999998843 242 134321112211 1 1 1234444 335
Q ss_pred EeEEEEEEEEECCeEEE-eEEEEec-CCCcccccchhh
Q psy8018 205 IGRIHMVQIAIENDFLT-TSFSVLE-DQPMDMLLGLDM 240 (280)
Q Consensus 205 ~g~i~~~~i~IG~~~~~-~~~~Vl~-~~~~d~ILG~D~ 240 (280)
.|.+....+.+|+..++ ..|.+.. ....|+||||-+
T Consensus 91 ~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~ 128 (342)
T 2qzx_A 91 KGKLYKDTVGIGGVSVRDQLFANVWSTSARKGILGIGF 128 (342)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEECSC
T ss_pred EEEEEEEEEEECCEEecceEEEEEEecCCCcCEEEEcc
Confidence 68888889999987654 4565554 236899999875
No 177
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=90.44 E-value=1.1 Score=40.21 Aligned_cols=100 Identities=10% Similarity=0.137 Sum_probs=59.4
Q ss_pred EEEcCEE------EEEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE--
Q psy8018 154 CRVNGHP------VKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT-- 221 (280)
Q Consensus 154 ~~InG~~------v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-- 221 (280)
+.|+|.. ..++||||.+.+.++.+.++++ +.... ..|........ .......+.+|+..++
T Consensus 208 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~----~~g~~~~C~~~---~~~p~i~f~f~g~~~~l~ 280 (341)
T 3k1w_A 208 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKR----LFDYVVKCNEG---PTLPDISFHLGGKEYTLT 280 (341)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC----SSCEEEEGGGG---GGCCCEEEEETTEEEEEC
T ss_pred EEECCEEeecCCCCEEEEECCCChhcCCHHHHHHHHHHcCCeec----CCCeEEeCCCC---CcCCcEEEEECCEEEEEC
Confidence 4577774 4799999999999999877765 22110 00100000000 0011224455554332
Q ss_pred ---------------eEEEEec-----CCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 222 ---------------TSFSVLE-----DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 222 ---------------~~~~Vl~-----~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
|-+.+.. ......|||..||+.+-.+.|+.++++-|...
T Consensus 281 ~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a 339 (341)
T 3k1w_A 281 SADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 339 (341)
T ss_dssp HHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred HHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEEC
Confidence 2222222 11345899999999999999999999998765
No 178
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=90.33 E-value=1.2 Score=33.39 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=26.4
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA 179 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A 179 (280)
...++++.|+ ++++.+++|||+..+-+ +..|.
T Consensus 13 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~ 47 (97)
T 1lya_A 13 AQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCK 47 (97)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC
T ss_pred CeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCcc
Confidence 4688999998 89999999999998866 44454
No 179
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.05 E-value=0.55 Score=34.73 Aligned_cols=44 Identities=5% Similarity=0.146 Sum_probs=37.7
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG 47 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G 47 (280)
+|+|... -++.+.|+++.+..+|.++|.++.++|++.-+|.|.-
T Consensus 7 ~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 7 TLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 3444443 6889999999999999999999999999999999954
No 180
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=89.96 E-value=2.4 Score=33.73 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=48.6
Q ss_pred CCcEEEEEeCCCccHHHHHHHHHHH--hCCC------CcceEEEE----CCee-eCCCc------------CCccccCCC
Q psy8018 9 DNECFLLDVSEDLELENFKAFCEVQ--SGIS------AQEIAIEF----QGNA-LVDNK------------KTLKDYNIQ 63 (280)
Q Consensus 9 ~g~~~~leV~~~~tV~~LK~~Ie~e--~gip------~~~Q~Li~----~Gk~-L~d~~------------~tL~~~gI~ 63 (280)
++..+++.|-..+||.++|++|-.. .|.| +++..|-+ .|+. |.|.+ .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4567889999999999999998765 3554 35677766 2333 55411 369999999
Q ss_pred CCCEEEEEEe
Q psy8018 64 DGDLVLLKRV 73 (280)
Q Consensus 64 ~gd~l~l~~~ 73 (280)
||.+|.|..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999999875
No 181
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=89.85 E-value=1.4 Score=39.65 Aligned_cols=102 Identities=8% Similarity=0.069 Sum_probs=58.0
Q ss_pred EEEEcCEEE-----EEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEE---
Q psy8018 153 NCRVNGHPV-----KAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFL--- 220 (280)
Q Consensus 153 ~~~InG~~v-----~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~--- 220 (280)
.+.|+|..+ .++||||.+.+.++.+.++++ +-....+..+. ..-... .......+.+|+..+
T Consensus 200 ~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~---~~C~~~---~~~P~i~f~f~g~~~~i~ 273 (329)
T 1dpj_A 200 GIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYT---LDCNTR---DNLPDLIFNFNGYNFTIG 273 (329)
T ss_dssp EEEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCEECTTSSEE---ECGGGG---GGCCCEEEEETTEEEEEC
T ss_pred eEEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCccCCCCeEE---EECCCC---CcCCcEEEEECCEEEEEC
Confidence 356777654 599999999999999887765 21100000000 000000 001112233333221
Q ss_pred ----------EeEEEEec-----CCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 221 ----------TTSFSVLE-----DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 221 ----------~~~~~Vl~-----~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
.|-+.+.. ......|||..||+.+-.+.|+.+++|-|...
T Consensus 274 ~~~y~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~ 328 (329)
T 1dpj_A 274 PYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA 328 (329)
T ss_dssp TTTSEEEETTEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred HHHhEecCCCEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEEC
Confidence 13322222 12345899999999999999999999988754
No 182
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=89.84 E-value=0.81 Score=43.31 Aligned_cols=88 Identities=14% Similarity=0.237 Sum_probs=56.1
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHHcCCccccccc----e--e----eeeecCceeeEEeEEEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQIA 214 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~i~ 214 (280)
..+++++.|+ ++++++++|||+..+-+. ..| |......+.. + . .+.+|-|. ..|.+....+.
T Consensus 74 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c---c~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~ 148 (455)
T 3lpj_A 74 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVS 148 (455)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCcceEEecccc---cccCCcccCCCCCCcccCCccEEEEeCCeE--EEEEEEEEEEE
Confidence 3689999998 899999999999988874 334 3322221111 1 1 13456565 37888888999
Q ss_pred ECC---eEEEeEEEEec--------CCCcccccchhh
Q psy8018 215 IEN---DFLTTSFSVLE--------DQPMDMLLGLDM 240 (280)
Q Consensus 215 IG~---~~~~~~~~Vl~--------~~~~d~ILG~D~ 240 (280)
+|+ ..+...|.+.. ....|+||||-+
T Consensus 149 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~ 185 (455)
T 3lpj_A 149 IPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 185 (455)
T ss_dssp CTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred ECCCcceeeEEEEEEEEccCcccccCCCcceEEEeCc
Confidence 984 22332333221 235799999975
No 183
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=89.75 E-value=1.5 Score=39.49 Aligned_cols=103 Identities=14% Similarity=0.220 Sum_probs=60.8
Q ss_pred EEEEcCEE----EEEEEcCCCcceecCHHHHHHcCCcccccccee--eeeec-CceeeEEeEEEEEEEEE-CCeEEE---
Q psy8018 153 NCRVNGHP----VKAFIDSGAQTTIMSAACAARVNITRLIDTRWA--GIAKG-VGVQRIIGRIHMVQIAI-ENDFLT--- 221 (280)
Q Consensus 153 ~~~InG~~----v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~--g~a~g-vG~~~~~g~i~~~~i~I-G~~~~~--- 221 (280)
.+.|||+. ..++||||.+.+.++.+.++++--. +...+. +.... +-- .......+.+ |+..+.
T Consensus 201 ~i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~--~~~~~~~~~~~~~~~~C----~~~p~i~f~f~~g~~~~i~~ 274 (334)
T 1j71_A 201 SINFDGTSVSTNADVVLDSGTTITYFSQSTADKFARI--VGATWDSRNEIYRLPSC----DLSGDAVFNFDQGVKITVPL 274 (334)
T ss_dssp EEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHH--HTCEEETTTTEEECSSS----CCCSEEEEEESTTCEEEEEG
T ss_pred EEEECCEeccCCccEEEeCCCCcEecCHHHHHHHHHH--cCCcccCCCceEEEEcC----CCCCceEEEEcCCcEEEECH
Confidence 35678865 4589999999999999888765110 111100 00000 000 0011223444 333221
Q ss_pred ------------eEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018 222 ------------TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE 263 (280)
Q Consensus 222 ------------~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~ 263 (280)
|-+.+... -..|||-.||+.+-.+.|+.++++-|...+..
T Consensus 275 ~~y~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 326 (334)
T 1j71_A 275 SELILKDSDSSICYFGISRN--DANILGDNFLRRAYIVYDLDDKTISLAQVKYT 326 (334)
T ss_dssp GGGEEECSSSSCEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEEECCC
T ss_pred HHheeecCCCCeeEEEEeEC--CCcEEChHhhccEEEEEECCCCEEEEEecCCC
Confidence 33322222 24899999999999999999999999887664
No 184
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=89.63 E-value=0.82 Score=42.52 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=57.1
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecC-H-----------HHH----HHcCCc--------c-----ccccceeeee
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-A-----------ACA----ARVNIT--------R-----LIDTRWAGIA 196 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~-----------~~A----~rlgL~--------~-----~~d~r~~g~a 196 (280)
...++++.|+ .+++.++||||+..+-+. . .|. ..++-- . .....+ .+.
T Consensus 21 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~~~Sst~~~~~C~s~~C~~~~~~~c~~c~~~~~s~~~~~~~~~-~~~ 99 (403)
T 3aup_A 21 GLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGL-MST 99 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCSSEEEECSSCCCCSSCBCCCTTBHHHHHTTCCCEEECSSSCBTTBCSSEEEE-EEE
T ss_pred ceEEEEEECCCCCceeEEEEECCCCceeECCCCCCCCCCCCccCCCCccccCccccCccccCCCCCCCCCCCccee-Eee
Confidence 4678999998 889999999999988763 2 221 111100 0 001112 133
Q ss_pred ecCceeeEEeEEEEEEEEECC-----------eEEE-eEEEEecC--------CCcccccchhh
Q psy8018 197 KGVGVQRIIGRIHMVQIAIEN-----------DFLT-TSFSVLED--------QPMDMLLGLDM 240 (280)
Q Consensus 197 ~gvG~~~~~g~i~~~~i~IG~-----------~~~~-~~~~Vl~~--------~~~d~ILG~D~ 240 (280)
+|..+....|.+....+.+|+ ..++ ..|.+... ...|+||||-+
T Consensus 100 Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 163 (403)
T 3aup_A 100 NPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGH 163 (403)
T ss_dssp ETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSS
T ss_pred cCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCC
Confidence 443345667888888899986 4443 45655542 25799999865
No 185
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=89.51 E-value=1.5 Score=39.33 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=62.2
Q ss_pred EEEcCEEE----EEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE---EeEEEEEEEEEC-CeEEE----
Q psy8018 154 CRVNGHPV----KAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI---IGRIHMVQIAIE-NDFLT---- 221 (280)
Q Consensus 154 ~~InG~~v----~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~---~g~i~~~~i~IG-~~~~~---- 221 (280)
+.|||..+ .++||||.+.+.++.+.++++--. +...+.......|.-.. ........+.++ +..+.
T Consensus 204 i~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~--~~~~~~~~~~~~~~~~~~C~~~~~p~i~f~f~~g~~~~v~~~ 281 (339)
T 3fv3_A 204 VNLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLADK--AGARLVQVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVPNT 281 (339)
T ss_dssp EEESSCEEEEEEEEEECTTBSSEEECHHHHHHHHHH--HTCEEEEEETTEEEEEECTTCCCCSEEEEEETTSCEEEEEGG
T ss_pred EEECCEeecCCccEEEeCCCCCEecCHHHHHHHHHH--cCCEEccccccCceEEEecCCCCCCcEEEEECCCCEEEECHH
Confidence 56788754 499999999999999988776211 11111000000000000 000122345553 33222
Q ss_pred ----------eEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018 222 ----------TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE 263 (280)
Q Consensus 222 ----------~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~ 263 (280)
|-+.+.+ .-..|||..||+.+-.+.|+.++++-|...+..
T Consensus 282 ~~~~~~~~~~C~~~i~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 331 (339)
T 3fv3_A 282 EYVYQNGDGTCLWGIQP--SDDTILGDNFLRHAYLLYNLDANTISIAQVKYT 331 (339)
T ss_dssp GGEEECSSSCEEESEEE--CSSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred HheeeCCCCeEEEEEEe--CCcEEeChHHHhCEEEEEECCCCEEEEEecCCC
Confidence 3233332 123899999999999999999999999887664
No 186
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=89.47 E-value=0.61 Score=41.87 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=60.0
Q ss_pred EEEEcCEE-----EEEEEcCCCcceecCHHHHHHc----CCccccccceeee-eecCceeeEEeEEEEEEEEECCeEEE-
Q psy8018 153 NCRVNGHP-----VKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGI-AKGVGVQRIIGRIHMVQIAIENDFLT- 221 (280)
Q Consensus 153 ~~~InG~~-----v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~-a~gvG~~~~~g~i~~~~i~IG~~~~~- 221 (280)
.+.|||.. ..++||||.+.+.++.+.++++ +-. . ..|. ...-... .......+.+|+..+.
T Consensus 196 ~i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~----~~g~~~~~C~~~---~~~P~i~f~f~g~~~~i 267 (324)
T 1am5_A 196 GITVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMKDIGAS-E----NQGEMMGNCASV---QSLPDITFTINGVKQPL 267 (324)
T ss_dssp EEEETTEECCCCCEEEEECTTCSSEEECTTTHHHHHHHHTCE-E----CCCCEECCTTSS---SSSCCEEEEETTEEEEE
T ss_pred EEEECCceeeccCceEEEecCCccEECCHHHHHHHHHHhCCc-c----cCCcEEEeCCCc---ccCCcEEEEECCEEEEE
Confidence 45678876 5799999999999998877665 221 0 0010 0000000 0111224455554332
Q ss_pred ------------eEEEEecC-----CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 222 ------------TSFSVLED-----QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 222 ------------~~~~Vl~~-----~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
|-+.+... .....|||..||+.+-.+.|+.+++|-|...
T Consensus 268 ~~~~y~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a 323 (324)
T 1am5_A 268 PPSAYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPA 323 (324)
T ss_dssp CHHHHEEESSSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEB
T ss_pred CHHHhcccCCCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEEC
Confidence 43333321 1235899999999999999999999988754
No 187
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=89.44 E-value=1.2 Score=40.63 Aligned_cols=32 Identities=13% Similarity=-0.015 Sum_probs=27.6
Q ss_pred cccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018 232 MDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE 263 (280)
Q Consensus 232 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~ 263 (280)
...|||..||+.+-.+.|+.+++|-|...+.+
T Consensus 313 ~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~ 344 (351)
T 1tzs_A 313 PLWILGDVFIRQFYSVFDRGNNRVGLAPAVPW 344 (351)
T ss_dssp SCEEECHHHHHHEEEEEETTTTEEEEEEBC--
T ss_pred CeEEEChHHhhheEEEEECCCCEEEEEECCcc
Confidence 35899999999999999999999999887654
No 188
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=89.21 E-value=1.2 Score=41.05 Aligned_cols=100 Identities=9% Similarity=0.163 Sum_probs=58.7
Q ss_pred EEEcCE---EEEEEEcCCCcceecCHHHHHHc----CCccccccceeee-eecCceeeEEeEEEEEEEEECCeEE-----
Q psy8018 154 CRVNGH---PVKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGI-AKGVGVQRIIGRIHMVQIAIENDFL----- 220 (280)
Q Consensus 154 ~~InG~---~v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~-a~gvG~~~~~g~i~~~~i~IG~~~~----- 220 (280)
+.|||. ...|+||||.+.+.++.+.++++ +-. .+. ..|. ...... .......+.+|+..+
T Consensus 247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~--~~~-~~g~~~~~C~~----~~~P~i~f~f~g~~~~l~~~ 319 (375)
T 1miq_A 247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVI--KVP-FLPFYVTTCDN----KEMPTLEFKSANNTYTLEPE 319 (375)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCE--ECT-TSSCEEEETTC----TTCCCEEEECSSCEEEECGG
T ss_pred EEECCEEcccceEEecCCCccEEcCHHHHHHHHHHhCCc--ccC-CCCeEEEECCC----CCCCcEEEEECCEEEEECHH
Confidence 678886 56899999999999999887765 221 000 0000 000000 001111233333221
Q ss_pred ------------EeEEEEecCC--CcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 221 ------------TTSFSVLEDQ--PMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 221 ------------~~~~~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
.|-+.+.+.. ....|||-.||+.+-.+.|+.+++|-|...
T Consensus 320 ~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~ 373 (375)
T 1miq_A 320 YYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIA 373 (375)
T ss_dssp GSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEE
T ss_pred HhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEc
Confidence 2333333322 145899999999999999999999988765
No 189
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=88.95 E-value=0.69 Score=41.62 Aligned_cols=103 Identities=11% Similarity=0.089 Sum_probs=59.3
Q ss_pred EEEEcCEE-------EEEEEcCCCcceecCHHHHHHcCCccccccce--eee-eecCceeeEEeEEEEEEEEECCeEEE-
Q psy8018 153 NCRVNGHP-------VKAFIDSGAQTTIMSAACAARVNITRLIDTRW--AGI-AKGVGVQRIIGRIHMVQIAIENDFLT- 221 (280)
Q Consensus 153 ~~~InG~~-------v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~--~g~-a~gvG~~~~~g~i~~~~i~IG~~~~~- 221 (280)
.+.|||.. ..++||||.+.+.++.+.++++-- .+.... .|. ...-... .......+.+|+..+.
T Consensus 197 ~i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~--~~~~~~~~~g~~~~~C~~~---~~~P~i~f~f~g~~~~i 271 (329)
T 1htr_B 197 EFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQ--ATGAQEDEYGQFLVNCNSI---QNLPSLTFIINGVEFPL 271 (329)
T ss_dssp EEEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHH--HHTCEECTTSCEEECGGGG---GGSCCEEEEETTEEEEE
T ss_pred EEEECCceeeecCCCceEEEecCCccEECCHHHHHHHHH--HhCCeecCCCeEEEeCCCc---ccCCcEEEEECCEEEEE
Confidence 35678865 469999999999999887776511 011000 000 0000000 0011223444543322
Q ss_pred ------------eEEEEecC-----CCc-ccccchhhhhcceEEEEecccEEEeeee
Q psy8018 222 ------------TSFSVLED-----QPM-DMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 222 ------------~~~~Vl~~-----~~~-d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
|-+.+... .+. ..|||..||+.+-.+.|+.+++|-|...
T Consensus 272 ~~~~y~~~~~g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~ 328 (329)
T 1htr_B 272 PPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATA 328 (329)
T ss_dssp CHHHHEEECSSCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred CHHHhcccCCCEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeC
Confidence 43223221 123 5899999999999999999999988754
No 190
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=88.88 E-value=1.8 Score=39.38 Aligned_cols=32 Identities=6% Similarity=-0.047 Sum_probs=28.7
Q ss_pred cccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018 232 MDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE 263 (280)
Q Consensus 232 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~ 263 (280)
...|||..||+.+-.+.|+.+++|-|...+.+
T Consensus 326 ~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~~ 357 (361)
T 1mpp_A 326 NQFIVGNLFLRFFVNVYDFGKNRIGFAPLASG 357 (361)
T ss_dssp SCCEEEHHHHTTEEEEEETTTTEEEEEEBCTT
T ss_pred CCEEEChHHhccEEEEEECCCCEEEEEEcccC
Confidence 45899999999999999999999999887654
No 191
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=88.21 E-value=1.1 Score=41.49 Aligned_cols=88 Identities=14% Similarity=0.242 Sum_probs=55.5
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHHcCCccccccc----e--e----eeeecCceeeEEeEEEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQIA 214 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~i~ 214 (280)
...++++.|+ ++++++++|||++.+-+. ..| |......+.. + . .+.+|-|. ..|.+....+.
T Consensus 28 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c---~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v~ 102 (402)
T 3vf3_A 28 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVS 102 (402)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC---CcccCCcCcccCcccccCCCEEEEEECcEE--EEEEEEEEEEE
Confidence 4689999998 899999999999988873 344 2222211111 1 1 13456555 47888888999
Q ss_pred ECC-eE--EEeEEEEec--------CCCcccccchhh
Q psy8018 215 IEN-DF--LTTSFSVLE--------DQPMDMLLGLDM 240 (280)
Q Consensus 215 IG~-~~--~~~~~~Vl~--------~~~~d~ILG~D~ 240 (280)
+|+ .. ....+.+.. ....|+||||-+
T Consensus 103 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~ 139 (402)
T 3vf3_A 103 IPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 139 (402)
T ss_dssp CTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred ECCccccceeeeEEEEEccccccccCCCccceEEcCc
Confidence 984 22 222222221 235799999985
No 192
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=88.13 E-value=0.45 Score=36.25 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=43.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhCCCC-------c----ceEEEECC-eeeC-----CCcCCccccCCCCCCEEEEEEec
Q psy8018 12 CFLLDVSEDLELENFKAFCEVQSGISA-------Q----EIAIEFQG-NALV-----DNKKTLKDYNIQDGDLVLLKRVQ 74 (280)
Q Consensus 12 ~~~leV~~~~tV~~LK~~Ie~e~gip~-------~----~Q~Li~~G-k~L~-----d~~~tL~~~gI~~gd~l~l~~~~ 74 (280)
..+++|+++.|+++|-..+.+...+-. . ...|+..+ ..|+ +-+++|.+.|+.+|+.|++.-..
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD~~ 85 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVT 85 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTT
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEECCC
Confidence 557899999999999999988433211 1 34455444 1232 22477999999999999987543
Q ss_pred c
Q psy8018 75 V 75 (280)
Q Consensus 75 ~ 75 (280)
.
T Consensus 86 ~ 86 (98)
T 1y8x_B 86 T 86 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 193
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=88.10 E-value=3.7 Score=36.76 Aligned_cols=103 Identities=10% Similarity=0.021 Sum_probs=58.7
Q ss_pred EEEcC---EEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceee--EEeEEEEEEEEECCeEEE-------
Q psy8018 154 CRVNG---HPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQR--IIGRIHMVQIAIENDFLT------- 221 (280)
Q Consensus 154 ~~InG---~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~--~~g~i~~~~i~IG~~~~~------- 221 (280)
+.|+| ....++||||.+.+.++.+.++++--... ...+. ...|.-. ..-......+.+|+..++
T Consensus 198 i~v~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~i~-~a~~~---~~~g~~~~~C~~~~P~i~f~fgg~~~~l~~~~~~ 273 (323)
T 1bxo_A 198 YTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVS-GAQQD---SNAGGYVFDCSTNLPDFSVSISGYTATVPGSLIN 273 (323)
T ss_dssp EEETTEEEEEEEEEECTTCSSEEECHHHHHHHHTTST-TCEEE---TTTTEEEECTTCCCCCEEEEETTEEEEECHHHHE
T ss_pred EEECCccCCCceEEEeCCCCceeCCHHHHHHHHHhCC-CceEc---CcCCEEEEECCCCCceEEEEECCEEEEECHHHeE
Confidence 34555 35679999999999999998887621100 00000 0001000 000112234555554332
Q ss_pred ---------eEEEEecC-CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 222 ---------TSFSVLED-QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 222 ---------~~~~Vl~~-~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
|-+.+... ..-..|||-.||+.+-.+.|+.+++|-|...
T Consensus 274 ~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 322 (323)
T 1bxo_A 274 YGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQ 322 (323)
T ss_dssp EEECSSSSCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred EeccCCCCeEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEecC
Confidence 22212221 1234899999999999999999999988654
No 194
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=87.91 E-value=1.8 Score=33.98 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=47.2
Q ss_pred CcEEEEEeCCCccHHHHHHHHHHH--hCCCC------cceEEEE-CC---e-eeCCCc------------CCccccCCCC
Q psy8018 10 NECFLLDVSEDLELENFKAFCEVQ--SGISA------QEIAIEF-QG---N-ALVDNK------------KTLKDYNIQD 64 (280)
Q Consensus 10 g~~~~leV~~~~tV~~LK~~Ie~e--~gip~------~~Q~Li~-~G---k-~L~d~~------------~tL~~~gI~~ 64 (280)
...+++.|-..+||.++|++|-.. .|.|. ++..|-+ .| + .|.|.+ .||+.|+|.|
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 445788888999999999998765 35553 4566765 33 3 354411 3699999999
Q ss_pred CCEEEEEEec
Q psy8018 65 GDLVLLKRVQ 74 (280)
Q Consensus 65 gd~l~l~~~~ 74 (280)
|.++-|+.++
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998863
No 195
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=87.41 E-value=1.7 Score=39.01 Aligned_cols=105 Identities=12% Similarity=0.017 Sum_probs=58.3
Q ss_pred EEEcCE-----EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE-------
Q psy8018 154 CRVNGH-----PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT------- 221 (280)
Q Consensus 154 ~~InG~-----~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~------- 221 (280)
+.|+|. ...++||||.+.+.++.+.++++--... ...+. ...|.-.....-......+.+|+..+.
T Consensus 197 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~-~a~~~-~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~ 274 (325)
T 1ibq_A 197 YSIGDGSSSSSGFSAIADTGTTLILLDDEIVSAYYEQVS-GAQES-YEAGGYVFSCSTDLPDFTVVIGDYKAVVPGKYIN 274 (325)
T ss_dssp EEETTSCCBSCCEEEEECTTCCSEEECHHHHHHHHTTST-TCBCC-SSSSSCEEETTCCCCCEEEEETTEEEEECHHHHE
T ss_pred EEECCeeccCCCceEEEeCCCCcEeCCHHHHHHHHHhCC-CceEc-CcCCeEEEEcCCCCCcEEEEECCEEEEECHHHhc
Confidence 456664 4679999999999999998887621100 00000 000000000000111224444543322
Q ss_pred ----------eEEEEecCC-CcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 222 ----------TSFSVLEDQ-PMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 222 ----------~~~~Vl~~~-~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
|-+.+.... .-..|||-.||+.+-.+.|+.+++|-|...
T Consensus 275 ~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~ 324 (325)
T 1ibq_A 275 YAPVSTGSSTCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFAAQ 324 (325)
T ss_dssp EEESSTTCSEEEESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred ccccCCCCCeEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEeeeC
Confidence 222122211 234799999999999999999999988653
No 196
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=87.41 E-value=1.7 Score=41.50 Aligned_cols=104 Identities=11% Similarity=0.139 Sum_probs=60.5
Q ss_pred EEEcCE---EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEE--eEEEEEEEEECCeEEE-------
Q psy8018 154 CRVNGH---PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRII--GRIHMVQIAIENDFLT------- 221 (280)
Q Consensus 154 ~~InG~---~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~--g~i~~~~i~IG~~~~~------- 221 (280)
+.|+|. ...|+||||.+.+.++.+.++++-=. +.... ...|..-.-.. .......+.+|+..++
T Consensus 323 I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l~~~--i~~~~--~~~g~~~~v~C~~~~~P~itf~fgg~~~~l~~~~yi 398 (453)
T 2bju_A 323 AHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQN--LDVIK--VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYL 398 (453)
T ss_dssp EEETTEEEEEEEEEECTTCCSEEECHHHHHHHTTT--SSCEE--CTTSSCEEEETTCTTCCCEEEECSSCEEEECHHHHE
T ss_pred EEECcEEeccccEEEcCCCCeEecCHHHHHHHHHH--hCCcc--cCCCceEEEecCCCCCCcEEEEECCEEEEECHHHhE
Confidence 567773 36799999999999999998887311 11100 00010000000 0011223444443221
Q ss_pred ----------eEEEEecCC--CcccccchhhhhcceEEEEecccEEEeeeee
Q psy8018 222 ----------TSFSVLEDQ--PMDMLLGLDMLKRHQVQIAIENDFLTTSFSV 261 (280)
Q Consensus 222 ----------~~~~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~ 261 (280)
|-+.+.+.. ....|||-.||+.+-.+.|+.+++|-+...+
T Consensus 399 ~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 399 QHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp EECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred eecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 322232221 2358999999999999999999999987654
No 197
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=87.09 E-value=4.8 Score=36.15 Aligned_cols=106 Identities=13% Similarity=0.189 Sum_probs=61.1
Q ss_pred EEEEcCEEE----EEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE--EeEEEEEEEEE-CCeEEE----
Q psy8018 153 NCRVNGHPV----KAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI--IGRIHMVQIAI-ENDFLT---- 221 (280)
Q Consensus 153 ~~~InG~~v----~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~--~g~i~~~~i~I-G~~~~~---- 221 (280)
.+.|||+.+ .++||||.+.+.++.+.++++--. +...+.. ....+..-. ........+.+ |+..+.
T Consensus 201 ~i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~--~~~~~~~-~~~~~~~~~~~C~~~p~i~f~f~~g~~~~i~~~ 277 (342)
T 2qzx_A 201 SVNVRGRNVDANTNVLLDSGTTISYFTRSIVRNILYA--IGAQMKF-DSAGNKVYVADCKTSGTIDFQFGNNLKISVPVS 277 (342)
T ss_dssp EEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHH--HTCEEEE-CTTSCEEEEECTTCCCEEEEEETTTEEEEEEGG
T ss_pred EEEECCEecCCCcCEEEeCCCCCEEcCHHHHHHHHHH--hCCeeee-ccCCCcEEEEECCCCCcEEEEECCCcEEEEcHH
Confidence 356788754 589999999999999988776110 1111000 000010000 00011224455 343322
Q ss_pred ----------------eEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018 222 ----------------TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE 263 (280)
Q Consensus 222 ----------------~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~ 263 (280)
|-+.+... -..|||..||+.+-.+.|+.+++|-|...+..
T Consensus 278 ~~~~~~~~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 2qzx_A 278 EFLFQTYYTSGKPFPKCEVRIRES--EDNILGDNFLRSAYVVYNLDDKKISMAPVKYT 333 (342)
T ss_dssp GGEECCBCTTSCBCSSEEESEEEC--SSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred HhcccccccCCCCCCccEEEEecC--CCcEeChHhhhcEEEEEECCCCEEEEEeeCCC
Confidence 22222111 24899999999999999999999999887654
No 198
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=86.82 E-value=1.7 Score=39.65 Aligned_cols=65 Identities=6% Similarity=0.127 Sum_probs=47.9
Q ss_pred CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC-eeeCCCcCCccccCCCC-CCEEEEEE
Q psy8018 8 LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG-NALVDNKKTLKDYNIQD-GDLVLLKR 72 (280)
Q Consensus 8 ~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G-k~L~d~~~tL~~~gI~~-gd~l~l~~ 72 (280)
..-....+.+.+..|+.++++.++.++++++++|.|+|.+ ....+....-+.|.-.. ..-|+|..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (396)
T 4eut_A 319 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 385 (396)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEE
T ss_pred ccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEe
Confidence 3455678899999999999999999999999999999998 44445545555554332 23344443
No 199
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=86.65 E-value=3 Score=38.10 Aligned_cols=88 Identities=13% Similarity=0.221 Sum_probs=54.6
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHHcCCcccccc----ce------eeeeecCceeeEEeEEEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAARVNITRLIDT----RW------AGIAKGVGVQRIIGRIHMVQIA 214 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~rlgL~~~~d~----r~------~g~a~gvG~~~~~g~i~~~~i~ 214 (280)
...++++.|+ ++++++++|||++.+-+. ..|.. |. ...+. .+ -.+.+|-|+ ..|.+....+.
T Consensus 13 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~-~~--~~f~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~ 87 (383)
T 2ewy_A 13 RGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSY-ID--TYFDTERSSTYRSKGFDVTVKYTQGS--WTGFVGEDLVT 87 (383)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTT-BS--CCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEE
T ss_pred CcEEEEEEecCCCceEEEEEecCCCceEEecCCCCc-cc--cCcccccCccceeCCceEEEEECCcE--EEEEEEEEEEE
Confidence 3578999998 899999999999998774 34422 21 11111 11 113456564 36888888999
Q ss_pred ECCe-EE--EeEEEEec--------CCCcccccchhh
Q psy8018 215 IEND-FL--TTSFSVLE--------DQPMDMLLGLDM 240 (280)
Q Consensus 215 IG~~-~~--~~~~~Vl~--------~~~~d~ILG~D~ 240 (280)
+|+. .. ...|.... ....|+||||-+
T Consensus 88 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~ 124 (383)
T 2ewy_A 88 IPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAY 124 (383)
T ss_dssp ETTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred ECCCccceeEEEEEEEEeecceeeccCcCceEEecCc
Confidence 9852 22 22333221 135799999875
No 200
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=86.57 E-value=1.3 Score=39.73 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=56.4
Q ss_pred EEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCcee--eEEeEEEEEEEEECCeEEE---------------
Q psy8018 159 HPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQ--RIIGRIHMVQIAIENDFLT--------------- 221 (280)
Q Consensus 159 ~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~--~~~g~i~~~~i~IG~~~~~--------------- 221 (280)
....+++|||.+.+.++.+.++++--.. ....+. ...|.- ...-......+.+|+..++
T Consensus 207 ~~~~aiiDSGTs~~~lp~~~~~~i~~~i-~ga~~~---~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~ 282 (323)
T 1izd_A 207 DSITGIADTGTTLLLLDDSIVDAYYEQV-NGASYD---SSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQ 282 (323)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHHHTTS-TTCEEE---TTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTE
T ss_pred CCceEEEeCCCcceeCCHHHHHHHHHhC-CCcEEc---CcCCEEEEECCCCCceEEEEECCEEEecCHHHeEEecCCCCe
Confidence 3467999999999999999888762110 000000 000100 0000112234555554332
Q ss_pred eEEEEecC-CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 222 TSFSVLED-QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 222 ~~~~Vl~~-~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
|-+.+... .....|||-.||+.+-.+.|+.+++|-|...
T Consensus 283 C~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~ 322 (323)
T 1izd_A 283 TFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQ 322 (323)
T ss_dssp EEESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEeeC
Confidence 22222221 1234899999999999999999999988654
No 201
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=86.41 E-value=0.63 Score=37.79 Aligned_cols=36 Identities=78% Similarity=1.168 Sum_probs=29.5
Q ss_pred eEEEEecccEEEeeeeecCCCccceeeccchhhccC
Q psy8018 245 QVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ 280 (280)
Q Consensus 245 ~~~ID~~~~~L~i~~~~~~~~~~~~~~~~~~~~~~~ 280 (280)
.+.|-+.+..+.....+++..++++|+|+|+|+||+
T Consensus 85 ~~~I~Ig~~~~~~~~~Vle~~~~d~LLGmD~L~~~~ 120 (148)
T 3s8i_A 85 LAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQ 120 (148)
T ss_dssp EEEEEETTEEEEEEEEEETTCSSSEEECHHHHHHTT
T ss_pred EEEEEECCEEEEEEEEEeCCCCcCeeccHHHHHhCC
Confidence 355666677777777888888999999999999996
No 202
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=86.16 E-value=1.3 Score=39.88 Aligned_cols=109 Identities=14% Similarity=0.191 Sum_probs=61.6
Q ss_pred EEEEEcC-EEE----EEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE--EeEEEEEEEEECCeEEE---
Q psy8018 152 INCRVNG-HPV----KAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI--IGRIHMVQIAIENDFLT--- 221 (280)
Q Consensus 152 i~~~InG-~~v----~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~--~g~i~~~~i~IG~~~~~--- 221 (280)
..+.|+| +.+ .++||||.+.+.++.+.++++ .. .....+.. ..|.-.... ........+.+|+..+.
T Consensus 193 ~~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l-~~-~~~a~~~~-~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~ 269 (340)
T 1wkr_A 193 QSIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKY-KK-ATGAVADN-NTGLLRLTTAQYANLQSLFFTIGGQTFELTA 269 (340)
T ss_dssp EEEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHH-HH-HHTCEECT-TTSSEEECHHHHHTCCCEEEEETTEEEEECT
T ss_pred eeEEECCCeEccCCCeEEEeCCcccccCCHHHHHHH-HH-hhCCEEcC-CCCeEEeeccccccCCcEEEEECCEEEEEcH
Confidence 4567888 654 799999999999999988876 11 11111100 000000000 00011123334443221
Q ss_pred -------------------eEEEEec--C---CCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018 222 -------------------TSFSVLE--D---QPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE 263 (280)
Q Consensus 222 -------------------~~~~Vl~--~---~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~ 263 (280)
|-+.+.+ . .+...|||-.||+.+-.+.|+.+++|-|...+..
T Consensus 270 ~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 335 (340)
T 1wkr_A 270 NAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFT 335 (340)
T ss_dssp GGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTT
T ss_pred HHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCC
Confidence 2122221 1 1234799999999999999999999999876553
No 203
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=85.80 E-value=1.9 Score=40.04 Aligned_cols=100 Identities=10% Similarity=0.133 Sum_probs=58.5
Q ss_pred EEEcCEE------EEEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE--
Q psy8018 154 CRVNGHP------VKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT-- 221 (280)
Q Consensus 154 ~~InG~~------v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-- 221 (280)
+.|||.. ..|+||||.+.+.++.+.++.+ |-.. .+..+ ...-... .......+.+|+..++
T Consensus 251 i~v~~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-~~g~~---~v~C~~~---~~~P~i~f~~~g~~~~l~ 323 (383)
T 2x0b_A 251 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKK-RLFDY---VVKCNEG---PTLPDISFHLGGKEYTLT 323 (383)
T ss_dssp EEESSCCCBSTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-CSSCE---EEEGGGT---TTCCCEEEEETTEEEEEC
T ss_pred EEeCCceEEcCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-cCCcE---EEecccc---ccCceEEEEECCEEEEEC
Confidence 5677754 5799999999999998877765 2211 00000 0000000 0011224455554332
Q ss_pred ---------------eEEEEecC-----CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 222 ---------------TSFSVLED-----QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 222 ---------------~~~~Vl~~-----~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
|-+.+... .....|||--||+.+-.+.|+.+++|-|...
T Consensus 324 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a 382 (383)
T 2x0b_A 324 SADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 382 (383)
T ss_dssp HHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred HHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEc
Confidence 32122211 1335899999999999999999999988654
No 204
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=85.50 E-value=3.2 Score=30.68 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=51.2
Q ss_pred EEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 13 FLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 13 ~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
+.-..+=..++..||.++|...|++-+.-.+...+..|..+ ++|-+-+++-.-++-+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~-k~LvdQcVqgeGlVQinv 63 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPD-RSLFDQGVKTDGTVQLSV 63 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTT-SBTTTSSCCCCSEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCC-ccHHHhhcccccEEEEEE
Confidence 44456667889999999999999999999999999998765 899999999888888876
No 205
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=85.44 E-value=0.97 Score=45.54 Aligned_cols=66 Identities=21% Similarity=0.389 Sum_probs=47.9
Q ss_pred CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccC---C------CCCCEEEEEEe
Q psy8018 8 LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYN---I------QDGDLVLLKRV 73 (280)
Q Consensus 8 ~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~g---I------~~gd~l~l~~~ 73 (280)
...+..++.+.++.|+.+|+..|+.++|||++.|.+++.+..-.++....+.|- . .|.++++|..+
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDN 393 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEec
Confidence 356667899999999999999999999999999999985544334445666652 2 24556666544
No 206
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=84.95 E-value=1 Score=35.90 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=31.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEE
Q psy8018 12 CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEF 45 (280)
Q Consensus 12 ~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~ 45 (280)
..++-|..++|+.+||..|+.++|+|+++|+|-.
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 3468889999999999999999999999999975
No 207
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=84.81 E-value=6.2 Score=35.34 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=57.9
Q ss_pred EEEcCE-----EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCcee--eEEeEEEEEEEEECCeEEE-----
Q psy8018 154 CRVNGH-----PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQ--RIIGRIHMVQIAIENDFLT----- 221 (280)
Q Consensus 154 ~~InG~-----~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~--~~~g~i~~~~i~IG~~~~~----- 221 (280)
+.|+|. ...++||||.+.+.++.+.++++--.. ....+. ...|.- ...-......+.+|+..+.
T Consensus 201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i-~~a~~~---~~~g~~~~~C~~~~P~i~f~fgg~~~~ip~~~ 276 (329)
T 1oew_A 201 YAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQV-SGAKSS---SSVGGYVFPCSATLPSFTFGVGSARIVIPGDY 276 (329)
T ss_dssp EEETTSCCEEEEEEEEECTTCCSEEECHHHHHHHHTTS-TTCEEE---TTTTEEEEETTCCCCCEEEEETTEEEEECHHH
T ss_pred EEECCeeccCCCceEEEeCCCCCEECCHHHHHHHHHhC-CCcEEc---CCCCEEEEECCCCCCcEEEEECCEEEEECHHH
Confidence 457774 457999999999999999888762110 000110 000100 0000111224445553322
Q ss_pred ------------eEEEEecC-CCcccccchhhhhcceEEEEe-cccEEEeee
Q psy8018 222 ------------TSFSVLED-QPMDMLLGLDMLKRHQVQIAI-ENDFLTTSF 259 (280)
Q Consensus 222 ------------~~~~Vl~~-~~~d~ILG~D~L~~~~~~ID~-~~~~L~i~~ 259 (280)
|-+.+... .....|||..||+.+-.+.|+ .+++|-|..
T Consensus 277 ~~~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~ 328 (329)
T 1oew_A 277 IDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFAS 328 (329)
T ss_dssp HEEEESSTTCSEEEESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEEE
T ss_pred eeeeecCCCCCeEEEEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEec
Confidence 22222211 123489999999999999999 999988753
No 208
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=84.56 E-value=1.6 Score=39.23 Aligned_cols=29 Identities=14% Similarity=-0.012 Sum_probs=26.0
Q ss_pred cccccchhhhhcceEEEEecccEEEeeee
Q psy8018 232 MDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 232 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
-..|||..||+.+-.+.|+.+++|-|...
T Consensus 295 ~~~iLG~~fl~~~y~vfD~~~~~igfA~~ 323 (325)
T 2apr_A 295 GFAIIGDTFLKNNYVVFNQGVPEVQIAPV 323 (325)
T ss_dssp SSEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred CCEEECHHHhcceEEEEECCCCEEEEEec
Confidence 34899999999999999999999988764
No 209
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=84.35 E-value=3.9 Score=29.88 Aligned_cols=69 Identities=19% Similarity=0.086 Sum_probs=42.9
Q ss_pred CEEEEEc------CCCcEEEEEeCCCccHHHHHHHHHHHhC-C-----C-------CcceEEEECCeeeCCCcCCccccC
Q psy8018 1 MKVTVTS------LDNECFLLDVSEDLELENFKAFCEVQSG-I-----S-------AQEIAIEFQGNALVDNKKTLKDYN 61 (280)
Q Consensus 1 M~ItV~~------~~g~~~~leV~~~~tV~~LK~~Ie~e~g-i-----p-------~~~Q~Li~~Gk~L~d~~~tL~~~g 61 (280)
|+|+|+. ..|....+++ +..||.+|.+.+..... + . ...-.+.-||+..... .- .++-
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~-~~-~~~~ 77 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFS-GG-LATA 77 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGT-TG-GGCB
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCc-CC-CCcC
Confidence 8899982 2233335775 45799999999987642 0 0 0124556688876531 11 2345
Q ss_pred CCCCCEEEEEE
Q psy8018 62 IQDGDLVLLKR 72 (280)
Q Consensus 62 I~~gd~l~l~~ 72 (280)
+++||.|.+..
T Consensus 78 L~~gDeV~i~P 88 (93)
T 3dwg_C 78 IADGDSVTILP 88 (93)
T ss_dssp CCTTCEEEEEE
T ss_pred CCCCCEEEEEC
Confidence 99999998876
No 210
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=84.12 E-value=1.8 Score=39.78 Aligned_cols=100 Identities=10% Similarity=0.076 Sum_probs=58.2
Q ss_pred EEEcCEE------EEEEEcCCCcceecCHHHHHHc----CCccccccceeee-eecCceeeEEeEEEEEEEEECCeEEE-
Q psy8018 154 CRVNGHP------VKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGI-AKGVGVQRIIGRIHMVQIAIENDFLT- 221 (280)
Q Consensus 154 ~~InG~~------v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~-a~gvG~~~~~g~i~~~~i~IG~~~~~- 221 (280)
+.|||.. ..|+||||.+.+.++.+.++.+ |-.... .|. ....... .......+.+|+..++
T Consensus 241 i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~----~g~~~v~C~~~---~~lP~i~f~~~g~~~~l 313 (370)
T 3psg_A 241 ITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENS----DGEMVISCSSI---DSLPDIVFTIDGVQYPL 313 (370)
T ss_dssp EESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECT----TCCEECCGGGG---GGCCCEEEEETTEEEEE
T ss_pred EEECCEEEecCCCceEEEcCCCCcEECCHHHHHHHHHHhCCcccC----CCcEEEECCCc---ccCCcEEEEECCEEEEE
Confidence 4567753 4799999999999998877765 222100 010 0000000 0112234555554333
Q ss_pred ------------eEEEEec--C---CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018 222 ------------TSFSVLE--D---QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 222 ------------~~~~Vl~--~---~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
|-+.+.. . .+.-.|||..||+.+-.+.|+.++++-|...
T Consensus 314 ~~~~yi~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a 369 (370)
T 3psg_A 314 SPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPV 369 (370)
T ss_dssp CHHHHEEECSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred CHHHhcccCCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEc
Confidence 3222222 1 1123899999999999999999999988654
No 211
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=84.07 E-value=2.3 Score=29.08 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=41.2
Q ss_pred CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 9 DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 9 ~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
+|+.+ ++ +..||.+|.+.+ ++++..-.+..||+.+.. ..-.+.-+++||.|.+..
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG--LEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG--GGCCCCCCCTTCEEEEEE
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc--cccCCcCCCCCCEEEEEe
Confidence 66655 45 668999998876 566777778889999863 234556799999999876
No 212
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=83.99 E-value=2.5 Score=29.16 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=42.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
|+++|+.++|+. .+++...|+.+|-..+....+ ..---...||+...-+ +-+++||.|.+..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~------~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS------YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT------CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC------cCcCCCCEEEEEE
Confidence 889999888876 567788999999887743321 1112234689866422 4577889888765
No 213
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=83.80 E-value=8 Score=34.51 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=61.1
Q ss_pred EEEEcCEE-----EEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE---EeEEEEEEEEEC-CeEEE--
Q psy8018 153 NCRVNGHP-----VKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI---IGRIHMVQIAIE-NDFLT-- 221 (280)
Q Consensus 153 ~~~InG~~-----v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~---~g~i~~~~i~IG-~~~~~-- 221 (280)
.+.|||.. ..++||||.+.+.++.+.++++--. +...+. ....|...- ........+.++ +..+.
T Consensus 200 ~i~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~--~~~~~~--~~~~~~~~~~~~C~~~p~i~f~f~~g~~~~vp 275 (342)
T 3pvk_A 200 SVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKA--FNGKLT--QDSNGNSFYEVDCNLSGDVVFNFSKNAKISVP 275 (342)
T ss_dssp EEEETTEEEEEEEEEEEECTTCSSEEECHHHHHHHHHH--TTCEEE--ECTTSCEEEEECSCCCSEEEEEESTTCEEEEE
T ss_pred EEEECCEEecCCCceEEEeCCCCCeecCHHHHHHHHHH--cCCeec--ccCCCceEEEEecCCCCceEEEECCCCEEEEc
Confidence 35678875 4699999999999999887776210 111100 000010000 000112244554 32221
Q ss_pred ------------------eEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018 222 ------------------TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE 263 (280)
Q Consensus 222 ------------------~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~ 263 (280)
|-+.+.. .-..|||..||+.+-.+.|+.++++-|...+..
T Consensus 276 ~~~~~~~~~~~~g~~~~~C~~~i~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 3pvk_A 276 ASEFAASLQGDDGQPYDKCQLLFDV--NDANILGDNFLRSAYIVYDLDDNEISLAQVKYT 333 (342)
T ss_dssp GGGGEEC----------CEEESEEE--CTTCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred HHHheeeccccCCCcCCeeEEEEee--CCCeEeCHHHHhcEEEEEECCCCEEEEEecCCC
Confidence 2222222 124799999999999999999999999887664
No 214
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=83.16 E-value=6.3 Score=31.24 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=43.9
Q ss_pred cEEEEEeCCCccHHHHHHHHHHH----hCCCC----cceEEEE-C---CeeeCCC-------------cCCccccCCCCC
Q psy8018 11 ECFLLDVSEDLELENFKAFCEVQ----SGISA----QEIAIEF-Q---GNALVDN-------------KKTLKDYNIQDG 65 (280)
Q Consensus 11 ~~~~leV~~~~tV~~LK~~Ie~e----~gip~----~~Q~Li~-~---Gk~L~d~-------------~~tL~~~gI~~g 65 (280)
..+++.|-..+||.++|++|-.. .|.|. ++..|-+ . |.+|.|. -.||+.|+|.||
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46888999999999999987543 37764 3445544 1 2334321 126889999999
Q ss_pred CEEEEEEe
Q psy8018 66 DLVLLKRV 73 (280)
Q Consensus 66 d~l~l~~~ 73 (280)
++|-+..+
T Consensus 119 atlal~kk 126 (126)
T 3kuz_A 119 STIKVFKK 126 (126)
T ss_dssp CEEEEEEC
T ss_pred CEEEEeeC
Confidence 99988763
No 215
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=83.04 E-value=2.4 Score=38.99 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=27.1
Q ss_pred ccccchhhhhcceEEEEecccEEEeeeeec
Q psy8018 233 DMLLGLDMLKRHQVQIAIENDFLTTSFSVL 262 (280)
Q Consensus 233 d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~ 262 (280)
-.|||--||+.+-.+.|+.+++|-|.....
T Consensus 345 ~~ILGd~fl~~~yvvfD~~~~riGfA~~~~ 374 (381)
T 1t6e_X 345 AVILGGAQMEDFVLDFDMEKKRLGFSRLPH 374 (381)
T ss_dssp SEEECHHHHTTEEEEEETTTTEEEEEECCT
T ss_pred eEEEChHHhCCcEEEEECCCCEEEEecccC
Confidence 489999999999999999999999987654
No 216
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=83.03 E-value=13 Score=28.16 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=54.2
Q ss_pred EEEEEcCCC---cEEEEEeCCCccHHHHHHHHHHHhCCCCc--ceEEEE--CCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 2 KVTVTSLDN---ECFLLDVSEDLELENFKAFCEVQSGISAQ--EIAIEF--QGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 2 ~ItV~~~~g---~~~~leV~~~~tV~~LK~~Ie~e~gip~~--~Q~Li~--~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
+|+|...+. ..+++.|..+.-|.-+..+|-+..+++.+ .--|-. ..+-|.....||..|||+.+..++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 577877553 56899999999999999998888877653 455554 233454455899999999999998875
No 217
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=82.71 E-value=2.8 Score=37.64 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=56.9
Q ss_pred EEEcCE-----EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceee--EEeEEEEEEEEECCeEEE-----
Q psy8018 154 CRVNGH-----PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQR--IIGRIHMVQIAIENDFLT----- 221 (280)
Q Consensus 154 ~~InG~-----~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~--~~g~i~~~~i~IG~~~~~----- 221 (280)
+.|+|. +..++||||.+.+.++.+.++++--.. ....+. ...|.-. ..-......+.+|+..+.
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~i~~~i-~~a~~~---~~~~~~~~~C~~~~P~i~f~f~g~~~~ip~~~ 277 (329)
T 3c9x_A 202 YSVGGGKLNRNSIDGIADTGTTLLLLDDNVVDAYYANV-QSAQYD---NQQEGVVFDCDEDLPSFSFGVGSSTITIPGDL 277 (329)
T ss_dssp EEETTCCCCSCCEEEEECTTCCSEEECHHHHHHHHTTC-TTCEEE---TTTTEEEEETTCCCCCEEEEETTEEEEECGGG
T ss_pred EEECCEeccCCCceEEEECCCCcEeCCHHHHHHHHHhC-CCcEEc---CCCCEEEEECCCCCCcEEEEECCEEEEECHHH
Confidence 456664 457999999999999999887762110 000000 0001000 000011223444443221
Q ss_pred ------------eEEEEecCC-CcccccchhhhhcceEEEEecccEEEeee
Q psy8018 222 ------------TSFSVLEDQ-PMDMLLGLDMLKRHQVQIAIENDFLTTSF 259 (280)
Q Consensus 222 ------------~~~~Vl~~~-~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 259 (280)
|-+.+.... .-..|||-.||+.+-.+.|+.+++|-|..
T Consensus 278 ~~~~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~ 328 (329)
T 3c9x_A 278 LNLTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQ 328 (329)
T ss_dssp GEEEESSTTCSEEEESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred eeeeccCCCCCeEEEEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEec
Confidence 222222211 23489999999999999999999988753
No 218
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=82.08 E-value=4.3 Score=37.53 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=25.6
Q ss_pred ccccchhhhhcceEEEEecccEEEe-eeee
Q psy8018 233 DMLLGLDMLKRHQVQIAIENDFLTT-SFSV 261 (280)
Q Consensus 233 d~ILG~D~L~~~~~~ID~~~~~L~i-~~~~ 261 (280)
..|||--||+.+-++.|+.+++|-| ...+
T Consensus 358 ~~ILG~~fl~~~yvvfD~~~~rIGf~A~~~ 387 (403)
T 3aup_A 358 EITLGARQLEENLVVFDLARSRVGFSTSSL 387 (403)
T ss_dssp SEEECHHHHTTSCEEEETTTTEEEEESSCG
T ss_pred cEEEChHHhcCeEEEEECCCCEEEEecccc
Confidence 4799999999999999999999999 5443
No 219
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=81.95 E-value=8.3 Score=28.59 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=41.9
Q ss_pred CEEEEEc-------C-CCcEEEEEeC--CCccHHHHHHHHHHHhCCC-Ccc------------eEEEECCeeeCCCcCCc
Q psy8018 1 MKVTVTS-------L-DNECFLLDVS--EDLELENFKAFCEVQSGIS-AQE------------IAIEFQGNALVDNKKTL 57 (280)
Q Consensus 1 M~ItV~~-------~-~g~~~~leV~--~~~tV~~LK~~Ie~e~gip-~~~------------Q~Li~~Gk~L~d~~~tL 57 (280)
|+|+|+. . +....+++++ +..||.+|.+.+.+...-. +.- -.+.-||+-.. -+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~----~~ 77 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE----LE 77 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG----GG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc----cc
Confidence 6788872 2 2345677887 6789999999998775211 111 11334555321 11
Q ss_pred --cccCCCCCCEEEEEE
Q psy8018 58 --KDYNIQDGDLVLLKR 72 (280)
Q Consensus 58 --~~~gI~~gd~l~l~~ 72 (280)
.++-+++||.|.+..
T Consensus 78 ~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 78 GEKDYILEDGDIISFTS 94 (99)
T ss_dssp TGGGCBCCTTCEEEEEE
T ss_pred CCCCcCcCCCCEEEEEC
Confidence 245699999998865
No 220
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=81.56 E-value=3.8 Score=37.73 Aligned_cols=88 Identities=14% Similarity=0.247 Sum_probs=54.5
Q ss_pred eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHHcCCccccc----cce------eeeeecCceeeEEeEEEEEEEE
Q psy8018 148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAARVNITRLID----TRW------AGIAKGVGVQRIIGRIHMVQIA 214 (280)
Q Consensus 148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~rlgL~~~~d----~r~------~g~a~gvG~~~~~g~i~~~~i~ 214 (280)
...++++.|+ ++++++++|||++.+-+. ..|.. + ....+ ..+ -.+.+|-|+. .|.+....+.
T Consensus 21 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~-~--~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~--~G~~~~Dtv~ 95 (395)
T 2qp8_A 21 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-L--HRYYQRQLSSTYRDLRKGVYVPYTQGKW--EGELGTDLVS 95 (395)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTT-C--SCCCCGGGCTTCEEEEEEEEEECSSCEE--EEEEEEEEEE
T ss_pred ceEEEEEEecCCCceEEEEEecCCCceEEECCCCcc-c--cCCcCcccCCCceeCCceEEEEECCcEE--EEEEEeEEEE
Confidence 3578999998 899999999999999874 33422 1 11111 111 1134565643 6888888999
Q ss_pred EC-CeEE--EeEEEEec--------CCCcccccchhh
Q psy8018 215 IE-NDFL--TTSFSVLE--------DQPMDMLLGLDM 240 (280)
Q Consensus 215 IG-~~~~--~~~~~Vl~--------~~~~d~ILG~D~ 240 (280)
+| +... ...|.... ....|+||||-+
T Consensus 96 ig~g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~ 132 (395)
T 2qp8_A 96 IPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 132 (395)
T ss_dssp CTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred ECCCCCceEEEEEEEEEccCcccccccCccceEEcCc
Confidence 98 4322 22333221 235799999875
No 221
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=81.20 E-value=6.4 Score=39.18 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=46.9
Q ss_pred cEEEEEeCCCccHHHHHHHHHHH--hCCCC------cceEEEE----CCe-eeCCCc------------CCccccCCCCC
Q psy8018 11 ECFLLDVSEDLELENFKAFCEVQ--SGISA------QEIAIEF----QGN-ALVDNK------------KTLKDYNIQDG 65 (280)
Q Consensus 11 ~~~~leV~~~~tV~~LK~~Ie~e--~gip~------~~Q~Li~----~Gk-~L~d~~------------~tL~~~gI~~g 65 (280)
..+++.|-..+||.++|++|-.. .|.|. ++..|-+ .|+ +|.|.+ .||+.|+|.||
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 45788999999999999998755 35554 4556655 233 355522 37999999999
Q ss_pred CEEEEEEec
Q psy8018 66 DLVLLKRVQ 74 (280)
Q Consensus 66 d~l~l~~~~ 74 (280)
.+|.|+.++
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999998873
No 222
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=80.75 E-value=8.9 Score=38.07 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=46.9
Q ss_pred CcEEEEEeCCCccHHHHHHHHHHH--hCCC------CcceEEEE----CCe-eeCCCc------------CCccccCCCC
Q psy8018 10 NECFLLDVSEDLELENFKAFCEVQ--SGIS------AQEIAIEF----QGN-ALVDNK------------KTLKDYNIQD 64 (280)
Q Consensus 10 g~~~~leV~~~~tV~~LK~~Ie~e--~gip------~~~Q~Li~----~Gk-~L~d~~------------~tL~~~gI~~ 64 (280)
.+.+++.|-..+||.++|++|-.. .|.| +++..|-+ .|+ +|.|.+ .||+.|+|.|
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 467889999999999999998765 3444 45666755 233 344411 3699999999
Q ss_pred CCEEEEEEec
Q psy8018 65 GDLVLLKRVQ 74 (280)
Q Consensus 65 gd~l~l~~~~ 74 (280)
|.+|.|+.++
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999998874
No 223
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=80.67 E-value=11 Score=27.10 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=40.4
Q ss_pred cEEEEEeCCCccHHHHHHHHHHHhC-CC----------CcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 11 ECFLLDVSEDLELENFKAFCEVQSG-IS----------AQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 11 ~~~~leV~~~~tV~~LK~~Ie~e~g-ip----------~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
....+++++..||.+|.+.+..... +. ...-.+.-||+....+ +-+++||.|.+..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~------~~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG------EATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT------SBCCTTCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC------cccCCCCEEEEEC
Confidence 5678899888999999999987642 10 0124666799887542 3599999998865
No 224
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=78.64 E-value=3.9 Score=39.85 Aligned_cols=60 Identities=12% Similarity=0.254 Sum_probs=50.3
Q ss_pred EEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC------CeeeCCCcCCcccc--CCCCCCEEEEEEe
Q psy8018 14 LLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ------GNALVDNKKTLKDY--NIQDGDLVLLKRV 73 (280)
Q Consensus 14 ~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~------Gk~L~d~~~tL~~~--gI~~gd~l~l~~~ 73 (280)
++-|+.+.+|.+|-..|.+..|+|++.-..+|. ...|.+.+.|++++ ++.+||+|.....
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~ 217 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKD 217 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEec
Confidence 368999999999999999999999987777775 33456456899999 9999999988764
No 225
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=78.46 E-value=5.4 Score=31.66 Aligned_cols=58 Identities=19% Similarity=0.397 Sum_probs=39.8
Q ss_pred EEEeCC----CccHHHHHHHHHHHhCCCCcceEEEE--CCeeeC------CCcCCccccCCCCCCEEEEEE
Q psy8018 14 LLDVSE----DLELENFKAFCEVQSGISAQEIAIEF--QGNALV------DNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 14 ~leV~~----~~tV~~LK~~Ie~e~gip~~~Q~Li~--~Gk~L~------d~~~tL~~~gI~~gd~l~l~~ 72 (280)
.+.|++ ..|+.+|-..+..+.|.+. ...+.- +.+.|- +-.+||++.|++.|++|.+.-
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 456664 4799998888888888764 333331 233332 234899999999999998864
No 226
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=77.62 E-value=9.5 Score=29.40 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=40.8
Q ss_pred CEEEEEc------CCC--cEEEEEeCC---CccHHHHHHHHHHHhCCCCcce------------E-EEECCeeeCCCcCC
Q psy8018 1 MKVTVTS------LDN--ECFLLDVSE---DLELENFKAFCEVQSGISAQEI------------A-IEFQGNALVDNKKT 56 (280)
Q Consensus 1 M~ItV~~------~~g--~~~~leV~~---~~tV~~LK~~Ie~e~gip~~~Q------------~-Li~~Gk~L~d~~~t 56 (280)
|+|+|+. ..| +...++++. ..||.+|...+.+.. |.... . ++-||+... -
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~----~ 85 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWE----L 85 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHH----H
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeee----c
Confidence 6788872 223 356788884 369999999988764 21111 2 233554211 1
Q ss_pred c--cccCCCCCCEEEEEE
Q psy8018 57 L--KDYNIQDGDLVLLKR 72 (280)
Q Consensus 57 L--~~~gI~~gd~l~l~~ 72 (280)
| .++-+++||.|.+..
T Consensus 86 l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 86 LGELDYQLQDQDSILFIS 103 (114)
T ss_dssp HCTTTCBCCSSEEEEEEE
T ss_pred cCCcCcCCCCCCEEEEeC
Confidence 1 246799999998876
No 227
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=76.56 E-value=6.8 Score=35.99 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=29.1
Q ss_pred cccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018 232 MDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE 263 (280)
Q Consensus 232 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~ 263 (280)
...|||..||+.+-++.|+.+++|-|...+..
T Consensus 345 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 376 (402)
T 3vf3_A 345 TGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 376 (402)
T ss_dssp SCEEECHHHHTTEEEEEEGGGTEEEEEEETTC
T ss_pred CcEEEChHHhCCeEEEEECCCCEEEEEecccC
Confidence 35899999999999999999999999987765
No 228
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=76.42 E-value=3.7 Score=38.71 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=29.7
Q ss_pred cccccchhhhhcceEEEEecccEEEeeeeecCC
Q psy8018 232 MDMLLGLDMLKRHQVQIAIENDFLTTSFSVLED 264 (280)
Q Consensus 232 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~~ 264 (280)
-..|||..||+.+-++.|+.+++|-|...+...
T Consensus 391 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~ 423 (455)
T 3lpj_A 391 TGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 423 (455)
T ss_dssp SCEEECHHHHTTEEEEEETTTTEEEEEEETTCC
T ss_pred CcEEEChHHhCCeEEEEECCCCEEEEEeccccc
Confidence 358999999999999999999999999988753
No 229
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=76.23 E-value=11 Score=34.33 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=55.0
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCC-cceEEEECC---------eeeCCCcCCccccCCCCCCEEEEE
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISA-QEIAIEFQG---------NALVDNKKTLKDYNIQDGDLVLLK 71 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~-~~Q~Li~~G---------k~L~d~~~tL~~~gI~~gd~l~l~ 71 (280)
.+.|..++|....++|+++.|+.++-..|....|+.. +-.-|.+.. ..|. .++++.+.+......+.+.
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~-~~k~l~~q~~~~~~~l~fr 165 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLD-HGRTLREQGVEEHETLLLR 165 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCC-TTSBTGGGTCCTTCEEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHh-cCchhHhhCCCCCceEEEE
Confidence 4667789999999999999999999999999999864 445565532 2343 3478888888778888877
Q ss_pred Ee
Q psy8018 72 RV 73 (280)
Q Consensus 72 ~~ 73 (280)
+|
T Consensus 166 vK 167 (371)
T 3ivf_A 166 RK 167 (371)
T ss_dssp EC
T ss_pred EE
Confidence 66
No 230
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=74.36 E-value=5.9 Score=29.85 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=46.6
Q ss_pred CEEEEEc--CC-CcEEEEEeCCCccHHHHHHHHHHH---hCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 1 MKVTVTS--LD-NECFLLDVSEDLELENFKAFCEVQ---SGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 1 M~ItV~~--~~-g~~~~leV~~~~tV~~LK~~Ie~e---~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
|+|.|.. ++ +..+.+++++..||.++-+..... ..|..+...+-.||+....+ +-+++||.|-+..
T Consensus 13 ~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d------~~L~dGDRVEIyr 84 (97)
T 2hj1_A 13 INIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLT------DVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTT------CBCCTTCEEEECC
T ss_pred EEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCC------ccCCCCCEEEEEe
Confidence 3455553 33 446688999999999998876542 24555567888899988633 3599999998864
No 231
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=74.05 E-value=21 Score=26.14 Aligned_cols=59 Identities=8% Similarity=0.163 Sum_probs=47.5
Q ss_pred EEEEeCCCccHHHHHHHHHHHh-C--C---CCcceEEEECC--eeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 13 FLLDVSEDLELENFKAFCEVQS-G--I---SAQEIAIEFQG--NALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 13 ~~leV~~~~tV~~LK~~Ie~e~-g--i---p~~~Q~Li~~G--k~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
.-+.|+.+.|+.++-+++.... | + |..-.+..++| +.|..+ .|+++.||++-+.|.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~-~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRG-MIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTT-CBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCC-CEeeccCCCCceEEEEEE
Confidence 3578999999999999998763 3 2 22356778999 889865 899999999999988754
No 232
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=73.98 E-value=3.2 Score=37.94 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=28.6
Q ss_pred ccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018 233 DMLLGLDMLKRHQVQIAIENDFLTTSFSVLE 263 (280)
Q Consensus 233 d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~ 263 (280)
..|||-.||+.+-.+.|+.+++|-|......
T Consensus 327 ~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 357 (383)
T 2ewy_A 327 ALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357 (383)
T ss_dssp CEEECHHHHTTEEEEEETTTTEEEEEECTTC
T ss_pred cEEEChHHhCCeeEEEECCCCeEEEEeccCC
Confidence 5899999999999999999999999988764
No 233
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=73.01 E-value=16 Score=28.59 Aligned_cols=60 Identities=10% Similarity=0.105 Sum_probs=46.1
Q ss_pred EEEEEeCCCccHHHHHHHHH-HHhC-------CCCcceEEEECCeee-CCCcCCccccCCCCCCEEEEE
Q psy8018 12 CFLLDVSEDLELENFKAFCE-VQSG-------ISAQEIAIEFQGNAL-VDNKKTLKDYNIQDGDLVLLK 71 (280)
Q Consensus 12 ~~~leV~~~~tV~~LK~~Ie-~e~g-------ip~~~Q~Li~~Gk~L-~d~~~tL~~~gI~~gd~l~l~ 71 (280)
.+.+-|+|+++..+|-+.+- .-.+ |+-+.=.-..+|++. .|.+++|++.|+..-|+|.+.
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 56789999999999877643 3333 343444567899998 566799999999999999875
No 234
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=72.54 E-value=7.2 Score=27.16 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=39.8
Q ss_pred cEEEEEeCCCccHHHHHHHHHHHhCCCCcce--EEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 11 ECFLLDVSEDLELENFKAFCEVQSGISAQEI--AIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 11 ~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q--~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
...++++++..||.+|.+.+..... ..... .+..||+....+ .-+++||.|.+..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~------~~L~~gD~V~i~p 72 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS------DFIQPNDTVALIP 72 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT------SEECTTCEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC------CCcCCCCEEEEEC
Confidence 4567788888999999999877631 01223 677899988643 4699999998864
No 235
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=71.48 E-value=21 Score=31.59 Aligned_cols=72 Identities=10% Similarity=-0.025 Sum_probs=52.0
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc-ceEEEE---CC--eeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ-EIAIEF---QG--NALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~-~Q~Li~---~G--k~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
+.+.|..++|...+++|++..|+.+|-..|....|+... -.-|.| +| ..|. .++++.+......-.+.+.++
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd-~~k~i~~q~~~~~~~l~frvk 95 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLD-SAKEIKKQVRGVPWNFTFNVK 95 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECC-TTSBHHHHC---CCEEEEEES
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhc-cchhHHHhcCCCCcEEEEEEE
Confidence 457788899999999999999999999999999999753 345655 23 2244 347888776545556666654
No 236
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=71.43 E-value=2.1 Score=31.49 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=35.2
Q ss_pred Ccccccchhhhhc-ceEEEEecccEEEeeeeecCCCccceeeccch
Q psy8018 231 PMDMLLGLDMLKR-HQVQIAIENDFLTTSFSVLEDQPMDMLLGLDM 275 (280)
Q Consensus 231 ~~d~ILG~D~L~~-~~~~ID~~~~~L~i~~~~~~~~~~~~~~~~~~ 275 (280)
+.++.+++-||.| -++.++..++.+++.-. .||||-||+.-
T Consensus 36 d~el~lAIGWLaREdKI~~~~~~~~l~v~L~----v~f~~~~~~~~ 77 (82)
T 2l02_A 36 VESTALAVGWLARENKVVIERKNGLIEIYNE----GHFDFSFGLEH 77 (82)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEETTEEEEEEG----GGTSCCCCCSC
T ss_pred HHHHHHHHHHHhccCceeEEeeCCEEEEEEc----cceeeeecccc
Confidence 3578999999988 77999999999999765 78999999864
No 237
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=70.05 E-value=15 Score=27.00 Aligned_cols=59 Identities=5% Similarity=0.064 Sum_probs=47.7
Q ss_pred EEEEeCCCccHHHHHHHHHHHh-CC---C-CcceEEEECCee--eCCCcCCccccCCCCCCEEEEEE
Q psy8018 13 FLLDVSEDLELENFKAFCEVQS-GI---S-AQEIAIEFQGNA--LVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 13 ~~leV~~~~tV~~LK~~Ie~e~-gi---p-~~~Q~Li~~Gk~--L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
.-+.|+.++|+.++-+++.... |. | +.-.+..++|+. |..+ .|+++.||++-|.|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~-mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRD-MTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTT-CBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCC-CEeeccCCCcceEEEEEE
Confidence 4578999999999999998763 33 1 236788899998 8865 899999999999998754
No 238
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=68.71 E-value=31 Score=30.12 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=51.1
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc-ceEEEE---CCee--eCCCcCCccccCCCCCCEEEEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ-EIAIEF---QGNA--LVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~-~Q~Li~---~Gk~--L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
|.+.|..++| ++.++|++++|+.+|-..|....|+... -.-|.| +|.. |. .++++.+.+++.+....+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd-~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLK-LNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECC-SSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecc-cccCHHhhccCCCCCEEEEE
Confidence 3567778888 6789999999999999999999999653 345655 3432 44 34788888776666554433
No 239
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=68.46 E-value=19 Score=26.61 Aligned_cols=44 Identities=7% Similarity=0.198 Sum_probs=36.0
Q ss_pred EEEEc-CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcc-eEEEEC
Q psy8018 3 VTVTS-LDNECFLLDVSEDLELENFKAFCEVQSGISAQE-IAIEFQ 46 (280)
Q Consensus 3 ItV~~-~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~-Q~Li~~ 46 (280)
|+||. .+|....+.|+++.+.++|.+++...++++.++ ..+.|.
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 56663 578899999999999999999999999998655 556564
No 240
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=68.05 E-value=13 Score=26.01 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=37.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhC-----CCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 12 CFLLDVSEDLELENFKAFCEVQSG-----ISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 12 ~~~leV~~~~tV~~LK~~Ie~e~g-----ip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
...++ .+..||.+|.+.+..... ++...-.+..||+.... +.-+++||.|.+..
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~------~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF------DHPLTDGDEVAFFP 76 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT------TCBCCTTCEEEEEC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC------CCCCCCCCEEEEeC
Confidence 45566 567899999998875421 22233467789988753 23589999998864
No 241
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=67.21 E-value=7.4 Score=36.33 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=26.7
Q ss_pred cccchhhhhcceEEEEecccEEEeeeeec
Q psy8018 234 MLLGLDMLKRHQVQIAIENDFLTTSFSVL 262 (280)
Q Consensus 234 ~ILG~D~L~~~~~~ID~~~~~L~i~~~~~ 262 (280)
.|||--||+.+.++.|+.+++|-|.....
T Consensus 372 ~IlGd~fl~~~~vvfD~~~~riGfa~~~~ 400 (413)
T 3vla_A 372 IVIGGHQLEDNLVQFDLATSRVGFSGTLL 400 (413)
T ss_dssp EEECHHHHTTEEEEEETTTTEEEEEEEGG
T ss_pred eeEehhhhcCeEEEEECCCCEEEEEEecc
Confidence 69999999999999999999999987755
No 242
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=67.11 E-value=17 Score=26.94 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=41.1
Q ss_pred CEEEEEcC------CC-cEEEEEeCCCccHHHHHHHHHHHh-CCCCc---------ce-------EEEECCeeeCCCcCC
Q psy8018 1 MKVTVTSL------DN-ECFLLDVSEDLELENFKAFCEVQS-GISAQ---------EI-------AIEFQGNALVDNKKT 56 (280)
Q Consensus 1 M~ItV~~~------~g-~~~~leV~~~~tV~~LK~~Ie~e~-gip~~---------~Q-------~Li~~Gk~L~d~~~t 56 (280)
|+|+|+.. .| ... +++ ..||.+|.+.+.... ++... .. .+..||+..... .
T Consensus 4 m~v~V~~fa~lr~~~g~~~~--~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~--~ 78 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPEL--PLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL--E 78 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEE--EEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT--T
T ss_pred eEEEEEEeHHHHHHhCCCeE--EEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc--C
Confidence 78888832 23 334 444 589999999988773 11110 12 567788876321 1
Q ss_pred ccccCCCCCCEEEEEE
Q psy8018 57 LKDYNIQDGDLVLLKR 72 (280)
Q Consensus 57 L~~~gI~~gd~l~l~~ 72 (280)
=.++-+++||.|.+..
T Consensus 79 ~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 79 GLETLLKDSDEIGILP 94 (99)
T ss_dssp STTSCCCTTEEEEEEC
T ss_pred CCCCCCCCCCEEEEEC
Confidence 1234699999998864
No 243
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=66.81 E-value=35 Score=30.12 Aligned_cols=68 Identities=10% Similarity=0.189 Sum_probs=50.0
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCC-cceEEEE--CCee--eCCCcCCccccCCCCCCEEEEE
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISA-QEIAIEF--QGNA--LVDNKKTLKDYNIQDGDLVLLK 71 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~-~~Q~Li~--~Gk~--L~d~~~tL~~~gI~~gd~l~l~ 71 (280)
.+.|..++| .+.++|++++|+.+|-..|....|+.. +-.-|.| +|.. |.. +++|.+.+++.+....+.
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~-~~~i~~q~~~~~~~~~l~ 96 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKM-DKKVLDHDVSKEEPVTFH 96 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCT-TSBGGGSSCCCSSSEEEE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCC-ccCHHHcCCCCCCCEEEE
Confidence 456777888 788999999999999999999999975 3345555 4543 443 488999887666654333
No 244
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=65.80 E-value=9.5 Score=28.94 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=46.9
Q ss_pred EEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc-ceEEE------ECCeeeCCCcC---CccccCCCCCCEEEEEEe
Q psy8018 4 TVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ-EIAIE------FQGNALVDNKK---TLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 4 tV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~-~Q~Li------~~Gk~L~d~~~---tL~~~gI~~gd~l~l~~~ 73 (280)
.|-..+|...+++|++++|+.++-+++..+.+...+ .-.|+ +--+.++|.+. .|+...+..+..++...+
T Consensus 13 kvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F~kr 92 (100)
T 1wgr_A 13 KVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVFRKN 92 (100)
T ss_dssp EEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEECSC
T ss_pred EEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEEecc
Confidence 444689999999999999999999999999877532 33333 12355665322 245556666666665443
No 245
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=64.81 E-value=33 Score=31.80 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=22.5
Q ss_pred eEEEEEEEEcC--EEEEEEEcCCCcceec
Q psy8018 148 IMLYINCRVNG--HPVKAFIDSGAQTTIM 174 (280)
Q Consensus 148 ~~l~i~~~InG--~~v~alVDTGAq~tii 174 (280)
...++++.|.. +++.+++|||+..+-+
T Consensus 20 ~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv 48 (413)
T 3vla_A 20 LQYVTTINQRTPLVSENLVVDLGGRFLWV 48 (413)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCSSEEE
T ss_pred CeEEEEEEcCCCCcceEEEEeCCChhhhc
Confidence 56889999976 7899999999986655
No 246
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=62.91 E-value=21 Score=25.60 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=43.7
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
+|+|.+++|..+ +++...|+.|+-..|..+.|-.+ .--..||+...-+ +-+++||.|.+...
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L~------~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPID------YKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECTT------CBCCTTCBEEEEEC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCCC------cccCCCCEEEEEcc
Confidence 578899999765 67788999999888866544221 1224588876432 45899999988763
No 247
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=62.80 E-value=2.6 Score=30.02 Aligned_cols=49 Identities=14% Similarity=0.373 Sum_probs=36.8
Q ss_pred EEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 14 LLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 14 ~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
++++++..||.+|.+.+ ++|...-.+..||+.+..+ .-+++||.|.+..
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~------~~L~dGD~V~i~p 72 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED------DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS------SCCCSSCCCBCSC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC------CCcCCCCEEEEEc
Confidence 45677788999987765 4677666788899998643 4699999887643
No 248
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=60.83 E-value=2.8 Score=32.35 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=38.7
Q ss_pred CEEEEEc------CCCcEEEEEeCC----CccHHHHHHHHHHHhCCCCcceEE---------------EECCeeeCCCcC
Q psy8018 1 MKVTVTS------LDNECFLLDVSE----DLELENFKAFCEVQSGISAQEIAI---------------EFQGNALVDNKK 55 (280)
Q Consensus 1 M~ItV~~------~~g~~~~leV~~----~~tV~~LK~~Ie~e~gip~~~Q~L---------------i~~Gk~L~d~~~ 55 (280)
|+|+|+. .-|+...+++++ ..||.+|-..+.+.. |...-.| +-||+...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e---- 78 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAE---- 78 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHH----
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeee----
Confidence 6777772 234555677773 259999888887763 2222222 23443321
Q ss_pred Cc--cccCCCCCCEEEEEE
Q psy8018 56 TL--KDYNIQDGDLVLLKR 72 (280)
Q Consensus 56 tL--~~~gI~~gd~l~l~~ 72 (280)
-| .+|-+++||.|.+..
T Consensus 79 ~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 79 VVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HHTSSCCCCCSSCEEEEEE
T ss_pred ccCCcccCCCCcCEEEEeC
Confidence 11 246799999988765
No 249
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=60.32 E-value=6.7 Score=38.16 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=30.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEE
Q psy8018 12 CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEF 45 (280)
Q Consensus 12 ~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~ 45 (280)
..++.|..++|+.+||+.|+++.|+|+++|||-.
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 3478899999999999999999999999999953
No 250
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=60.15 E-value=30 Score=24.44 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=37.7
Q ss_pred EEEeCCCccHHHHHHHHHHHhC------C-----CCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 14 LLDVSEDLELENFKAFCEVQSG------I-----SAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 14 ~leV~~~~tV~~LK~~Ie~e~g------i-----p~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
.++++...||.+|.+.+..... + ....-.+..||+..... .-.+.-+++||.|.+..
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~--~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM--KGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT--CSSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc--CCCCcCCCCCCEEEEeC
Confidence 4567767899999999877631 1 11344677899877521 11234599999998864
No 251
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=60.13 E-value=11 Score=30.02 Aligned_cols=59 Identities=7% Similarity=0.206 Sum_probs=44.0
Q ss_pred EEeCCCccHHHHHHHHHHHhCCCCcceEEE-ECCeeeCCCcCCcccc--CCC-CCCEEEEEEe
Q psy8018 15 LDVSEDLELENFKAFCEVQSGISAQEIAIE-FQGNALVDNKKTLKDY--NIQ-DGDLVLLKRV 73 (280)
Q Consensus 15 leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li-~~Gk~L~d~~~tL~~~--gI~-~gd~l~l~~~ 73 (280)
+-|+.+.||.+|...|....++++++-..+ |.++.+...+.++++. .-+ ++..|++...
T Consensus 57 flVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 358999999999999999999999877666 8777786655787765 122 3446666553
No 252
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=54.19 E-value=10 Score=32.35 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.3
Q ss_pred EEEcCEEE-------EEEEcCCCcceecCHHHHHHc
Q psy8018 154 CRVNGHPV-------KAFIDSGAQTTIMSAACAARV 182 (280)
Q Consensus 154 ~~InG~~v-------~alVDTGAq~tiis~~~A~rl 182 (280)
+.|||+.+ .|+||||.+.+.++.+.++++
T Consensus 197 i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i 232 (239)
T 1b5f_A 197 VLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232 (239)
T ss_dssp EEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEEecccCCCCEEEEecCcchhhCCHHHHHHH
Confidence 56788753 699999999999999988765
No 253
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.44 E-value=54 Score=32.06 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=51.1
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCC-cceEEEEC---Ce--eeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISA-QEIAIEFQ---GN--ALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~-~~Q~Li~~---Gk--~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
.+.|..++| ++.+.|++++|+.+|-..|....|++. +-.-|.|- |. .|. .++++.+.+++.+....+..+
T Consensus 6 ~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd-~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 6 NVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIK-LYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECC-TTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhh-ccccHHHhcccCCCCeEEEEE
Confidence 456777888 678999999999999999999999964 34566652 22 344 448898888877766555433
No 254
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=53.01 E-value=26 Score=25.78 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=32.3
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEE-EECC
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAI-EFQG 47 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~L-i~~G 47 (280)
+|.|-- ++..|.+-|+++.+..+|+.+|.....+. +..| .|++
T Consensus 14 KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykd 57 (85)
T 1ip9_A 14 KIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLF 57 (85)
T ss_dssp EEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCS
T ss_pred EEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecC
Confidence 344433 56799999999999999999999998883 4444 4443
No 255
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=52.81 E-value=13 Score=29.11 Aligned_cols=33 Identities=52% Similarity=0.944 Sum_probs=24.1
Q ss_pred EEEecccEEEeeeeecCCCccceeeccchhhccC
Q psy8018 247 QIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ 280 (280)
Q Consensus 247 ~ID~~~~~L~i~~~~~~~~~~~~~~~~~~~~~~~ 280 (280)
.+.+....+.+...+++ .+++.|+|.|.|++|.
T Consensus 89 ~i~ig~~~~~~~~~vl~-~~~d~iLG~d~L~~~~ 121 (148)
T 2i1a_A 89 QVKIETQYIPCSFTVLD-TDIDVLIGLDMLKRHL 121 (148)
T ss_dssp EEEETTEEEEEEEEEEC-SSCSEEECHHHHHHTT
T ss_pred EEEECCEEeceeEEEec-CCCCeEecHHHHhhCC
Confidence 44455555555556665 6799999999999984
No 256
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=52.71 E-value=28 Score=25.57 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=18.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhhHHHHHH
Q psy8018 103 RQRMLTADPFDTEAQKLIAEEIKKSNIQANME 134 (280)
Q Consensus 103 ~~~~~~~dp~~~e~q~~i~e~i~q~~i~~~~~ 134 (280)
-+..|+.||.||..=+.....|..=++-.|++
T Consensus 33 Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNaq 64 (85)
T 2ca5_A 33 ALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQ 64 (85)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35556799999965444444444444444443
No 257
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=52.04 E-value=28 Score=25.67 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=41.4
Q ss_pred EEEeCCCccHHHHHHHHHHHhCCCCcceEEEE-CCeeeCCCcCCccc----cCCCCCCEEEEEE
Q psy8018 14 LLDVSEDLELENFKAFCEVQSGISAQEIAIEF-QGNALVDNKKTLKD----YNIQDGDLVLLKR 72 (280)
Q Consensus 14 ~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~-~Gk~L~d~~~tL~~----~gI~~gd~l~l~~ 72 (280)
-+-|+.+.|++.+...|.....+++++-..+| |+.-+...+.++++ ++ ++..|.+..
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k--~DGfLyv~Y 84 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG--SDGKLVLHY 84 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC--BTTEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC--CCCEEEEEE
Confidence 36789999999999999999999887655445 66555443467654 45 566666655
No 258
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=48.28 E-value=15 Score=28.01 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=39.3
Q ss_pred EEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCcccc--CCC-CCCEEEEE
Q psy8018 15 LDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY--NIQ-DGDLVLLK 71 (280)
Q Consensus 15 leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~--gI~-~gd~l~l~ 71 (280)
+-|+.+.|+++|...|....++++++-..+|-+..+...+.++++. .-+ ++..|++.
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~ 107 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVA 107 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEE
Confidence 4678899999999999999999987655556555565455777765 111 24455554
No 259
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=46.08 E-value=29 Score=30.91 Aligned_cols=69 Identities=10% Similarity=0.093 Sum_probs=43.9
Q ss_pred EEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCC-cceEEE--E-C---CeeeCCCcCC---ccccCCCCCCEEEEEE
Q psy8018 4 TVTSLDNECFLLDVSEDLELENFKAFCEVQSGISA-QEIAIE--F-Q---GNALVDNKKT---LKDYNIQDGDLVLLKR 72 (280)
Q Consensus 4 tV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~-~~Q~Li--~-~---Gk~L~d~~~t---L~~~gI~~gd~l~l~~ 72 (280)
.|-..+|...+|+|++++|+++|-..+....+.+. +.-.|+ + + -|+|.|.+.- +...+...+..+.+..
T Consensus 35 kv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f~~ 113 (281)
T 4gmv_A 35 RVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFME 113 (281)
T ss_dssp EEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEEEC
T ss_pred EEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEEEe
Confidence 34467899999999999999999998888877643 333432 1 1 3556553222 2334555555555544
No 260
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=45.23 E-value=18 Score=27.96 Aligned_cols=59 Identities=8% Similarity=0.170 Sum_probs=41.5
Q ss_pred EEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCcccc--CCC-CCCEEEEEEe
Q psy8018 15 LDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY--NIQ-DGDLVLLKRV 73 (280)
Q Consensus 15 leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~--gI~-~gd~l~l~~~ 73 (280)
+-|+.+.||++|...|....++++++-..+|-+..+...+.++++. .-+ ++..|++...
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 3578899999999999999999987755556555565445777765 122 3556777653
No 261
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=43.36 E-value=15 Score=28.36 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=49.3
Q ss_pred EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc--ceEEEE--CCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ--EIAIEF--QGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~--~Q~Li~--~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
|+|...+ ..+++.|..+.-|.-+.-+|-+..+++.+ .--|-. ..+-|.....||..|||+.+..++...
T Consensus 29 V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 29 VHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp CCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 3343333 67889999999999999998888777543 444443 233454445899999999999887654
No 262
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=43.03 E-value=20 Score=28.17 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=40.7
Q ss_pred EEeCCCccHHHHHHHHHHHhCCCCcceEEEE-CCeeeCCCcCCcccc--CCC-CCCEEEEEEe
Q psy8018 15 LDVSEDLELENFKAFCEVQSGISAQEIAIEF-QGNALVDNKKTLKDY--NIQ-DGDLVLLKRV 73 (280)
Q Consensus 15 leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~-~Gk~L~d~~~tL~~~--gI~-~gd~l~l~~~ 73 (280)
+-|+.+.||++|...|.....+++++-..+| |+ .+...+.|+++. .-+ ++..|.+...
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn-~lPs~s~~m~~lY~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQEHHDEDFFLYIAFS 118 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTT-BCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECC-ccCCccchHHHHHHHcCCCCCeEEEEec
Confidence 4589999999999999999999888755555 55 565555777664 122 3446666553
No 263
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=42.63 E-value=26 Score=26.40 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=26.3
Q ss_pred CcEEEEEeCCCccHHHHHHHHHHHhCCCC
Q psy8018 10 NECFLLDVSEDLELENFKAFCEVQSGISA 38 (280)
Q Consensus 10 g~~~~leV~~~~tV~~LK~~Ie~e~gip~ 38 (280)
+..+++-|+++.+..+|..+|..+.+++.
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~ 50 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTH 50 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCc
Confidence 66899999999999999999999998763
No 264
>3zqe_A Protein PRGI, cell invasion protein SIPD; cell invasion complex, type III secretion, T3 complex, HOST pathogen interaction; HET: DXC; 2.19A {Salmonella enterica subsp} PDB: 3zqb_A* 2kv7_A 2x9c_A 2lpz_A 2jow_A
Probab=42.25 E-value=1.1e+02 Score=27.68 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHHHHHHhH
Q psy8018 81 PSDDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAM 137 (280)
Q Consensus 81 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~dp~~~e~q~~i~e~i~q~~i~~~~~~a~ 137 (280)
.++..+..|..+-......-...+..|++||.||+.=.++...|+|=..--|++.++
T Consensus 11 ~ld~v~~~~~~~a~~~~~~v~~ai~~l~~~~~np~~l~~~Q~~~~~~s~~~n~~s~~ 67 (305)
T 3zqe_A 11 YLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSNT 67 (305)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 466677777766554444445567788899999999999999998877777777554
No 265
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=40.17 E-value=1.5e+02 Score=24.20 Aligned_cols=31 Identities=6% Similarity=0.054 Sum_probs=26.4
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhCCCCcceE
Q psy8018 12 CFLLDVSEDLELENFKAFCEVQSGISAQEIA 42 (280)
Q Consensus 12 ~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~ 42 (280)
...|+|+.+.|+.+|=..|+..+|..-....
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~HL~ 53 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYHLH 53 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCSCE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCEee
Confidence 3479999999999999999999998765443
No 266
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=39.79 E-value=1.2e+02 Score=23.01 Aligned_cols=68 Identities=9% Similarity=0.122 Sum_probs=49.4
Q ss_pred EEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE---ECCeee--CCCcCCccccCCCCCCEEEEEEe
Q psy8018 5 VTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE---FQGNAL--VDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 5 V~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li---~~Gk~L--~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
|...+...+++-+..+.|+.+++..+.++.+..-+.+.|. ++|-.+ +++ ..--.-.+.-+..|++..+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~-d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPN-DLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTT-SBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCc-ceEEEeeccccceEEEeeh
Confidence 3455677788999999999999999999999887788886 466543 433 2222223555788888876
No 267
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=39.30 E-value=23 Score=28.78 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.5
Q ss_pred CEEEEE-cCCCcEEEEEeCCCccHHHHHHH
Q psy8018 1 MKVTVT-SLDNECFLLDVSEDLELENFKAF 29 (280)
Q Consensus 1 M~ItV~-~~~g~~~~leV~~~~tV~~LK~~ 29 (280)
|+..|+ +.||+.++++++|++|+.++-..
T Consensus 1 m~~~i~~~vNG~~~~v~~~~~~tLL~~Lr~ 30 (161)
T 1rm6_C 1 MKNILRLTLNGRAREDLVPDNMLLLDYLRE 30 (161)
T ss_dssp CEEEEEEEETTEEEEEEEETTCBHHHHHHH
T ss_pred CCceEEEEECCEEEEEecCCcCcHHHHHHH
Confidence 554554 46999999999999999887543
No 268
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=38.97 E-value=58 Score=27.87 Aligned_cols=36 Identities=14% Similarity=-0.068 Sum_probs=31.0
Q ss_pred EEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc
Q psy8018 4 TVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ 39 (280)
Q Consensus 4 tV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~ 39 (280)
.|-..+|...++.|++++|..++-..+..+.+++..
T Consensus 38 ~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~ 73 (291)
T 3tca_A 38 KVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCN 73 (291)
T ss_dssp EEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCC
T ss_pred EEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCC
Confidence 344678999999999999999999999999998654
No 269
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=38.43 E-value=33 Score=26.56 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=39.5
Q ss_pred EEeCCCccHHHHHHHHHHHhCCCCcceEEEE-CCeeeCCCcCCcccc--CCC-CCCEEEEEE
Q psy8018 15 LDVSEDLELENFKAFCEVQSGISAQEIAIEF-QGNALVDNKKTLKDY--NIQ-DGDLVLLKR 72 (280)
Q Consensus 15 leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~-~Gk~L~d~~~tL~~~--gI~-~gd~l~l~~ 72 (280)
+-|+.+.||++|...|.....+++++-..+| |+ .+...+.++++. .-+ ++..|++..
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~-~~p~~~~~m~~lY~~~kdeDGfLyv~Y 111 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVND-TLPPTAALMSAIYQEHKDKDGFLYVTY 111 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTT-BCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECC-ccCCccchHHHHHHHcCCCCCeEEEEE
Confidence 3489999999999999999999887655555 55 465445677654 122 334566654
No 270
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=38.08 E-value=30 Score=30.41 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=27.8
Q ss_pred EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCC
Q psy8018 3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGIS 37 (280)
Q Consensus 3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip 37 (280)
|+|-..+|...+|.|++++|+++|-.++..+.+++
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~ 45 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSV 45 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC---
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCC
Confidence 45556789999999999999999999888776654
No 271
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=37.17 E-value=42 Score=32.30 Aligned_cols=44 Identities=7% Similarity=-0.081 Sum_probs=37.8
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCC--cceEEEE
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISA--QEIAIEF 45 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~--~~Q~Li~ 45 (280)
.+.|..++|...+++|+++.|+.+|-..|....|+.. +-.-|++
T Consensus 218 ~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 218 TSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred ceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4677889999999999999999999999999999974 4456655
No 272
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.54 E-value=1.8e+02 Score=23.93 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Q psy8018 101 QLRQRMLTADPFDTEAQKLIAEEI 124 (280)
Q Consensus 101 ~~~~~~~~~dp~~~e~q~~i~e~i 124 (280)
.+...++.++.+|++.-+.+.+.|
T Consensus 99 ~EL~aL~~a~~~DeakI~aL~~Ei 122 (175)
T 3lay_A 99 YEYNALLTASSPDTAKINAVAKEM 122 (175)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHH
Confidence 344556777778877666665555
No 273
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=36.41 E-value=26 Score=24.80 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=25.5
Q ss_pred cccccchhhhhcceEEEEecccEEEeeee
Q psy8018 232 MDMLLGLDMLKRHQVQIAIENDFLTTSFS 260 (280)
Q Consensus 232 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~~ 260 (280)
...|||-.||+.+-.+.|+.++++-+...
T Consensus 58 ~~~ILGd~Fl~~~y~vfD~~~~riGfA~~ 86 (87)
T 1b5f_B 58 PLWILGDVFMRPYHTVFDYGNLLVGFAEA 86 (87)
T ss_dssp BEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred CeEEechHHhccEEEEEECCCCEEEEEEc
Confidence 45899999999999999999999987654
No 274
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=36.37 E-value=30 Score=26.89 Aligned_cols=57 Identities=12% Similarity=0.239 Sum_probs=40.1
Q ss_pred EEeCCCccHHHHHHHHHHHhCCCCcceEE-EECCeeeCCCcCCcccc--CCC-CCCEEEEEE
Q psy8018 15 LDVSEDLELENFKAFCEVQSGISAQEIAI-EFQGNALVDNKKTLKDY--NIQ-DGDLVLLKR 72 (280)
Q Consensus 15 leV~~~~tV~~LK~~Ie~e~gip~~~Q~L-i~~Gk~L~d~~~tL~~~--gI~-~gd~l~l~~ 72 (280)
+-|+.+.||++|...|.....+++++-.. +-|+. +...+.++++. .-+ ++..|++..
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~-~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDT-VLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTE-ECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCc-CCCccchHHHHHHHcCCCCCeEEEEE
Confidence 35899999999999999999999876444 44776 65555777664 122 244666654
No 275
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=36.15 E-value=1.2e+02 Score=22.01 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=46.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018 12 CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV 73 (280)
Q Consensus 12 ~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~ 73 (280)
...+.|+.+.....+-....+++.+|++.--++-+.-+=-+..+|-...=+|.|+-|-|..|
T Consensus 25 fkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPR 86 (92)
T 1j0g_A 25 YKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPR 86 (92)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEEC
T ss_pred ceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccc
Confidence 45789999999999999999999999987777654333223446665556788888888765
No 276
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=35.66 E-value=34 Score=27.53 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=43.1
Q ss_pred EEEEeCCCccHHHHHHHHHHHhC-CCCc----ceEEE-----------------ECCeeeCCCcCCccccCCCCCCEEEE
Q psy8018 13 FLLDVSEDLELENFKAFCEVQSG-ISAQ----EIAIE-----------------FQGNALVDNKKTLKDYNIQDGDLVLL 70 (280)
Q Consensus 13 ~~leV~~~~tV~~LK~~Ie~e~g-ip~~----~Q~Li-----------------~~Gk~L~d~~~tL~~~gI~~gd~l~l 70 (280)
..+-...+.|+.+|-.+|.+..- .+.. ..+++ +.|+.-.|+++||.+++.+-||.|.+
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 135 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDI 135 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEEE
Confidence 56777899999999999987621 1111 11222 33444456779999999999999999
Q ss_pred EEe
Q psy8018 71 KRV 73 (280)
Q Consensus 71 ~~~ 73 (280)
..-
T Consensus 136 aI~ 138 (143)
T 4a6q_A 136 AIT 138 (143)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 277
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=34.46 E-value=33 Score=27.99 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=20.9
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHH
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFK 27 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK 27 (280)
|.|+++ .+|+.++++++|+.|+.++-
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~L 29 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLL 29 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHH
Confidence 355554 48999999999999998874
No 278
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=34.27 E-value=60 Score=24.81 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=41.5
Q ss_pred EEEE--cCCCcEEEEEeCCCccHHHHHHHHHHHh-CC-------CCcceEEEE---CCee--eCCCcCCccccCCC
Q psy8018 3 VTVT--SLDNECFLLDVSEDLELENFKAFCEVQS-GI-------SAQEIAIEF---QGNA--LVDNKKTLKDYNIQ 63 (280)
Q Consensus 3 ItV~--~~~g~~~~leV~~~~tV~~LK~~Ie~e~-gi-------p~~~Q~Li~---~Gk~--L~d~~~tL~~~gI~ 63 (280)
+.|. .++|-.++++++.+.|+.++|+.+-++. .. .++.-.+.. +|.. +.|+++-|.+...-
T Consensus 20 v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 20 ILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred EEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 4454 5799999999999999999999887662 12 233333332 2344 77777778776544
No 279
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=33.58 E-value=45 Score=24.69 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.7
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHH
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENF 26 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~L 26 (280)
+||+...+|..+++++.+..|+.+.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a 26 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEA 26 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHH
Confidence 6899999999999999999998875
No 280
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=32.45 E-value=1.1e+02 Score=24.77 Aligned_cols=56 Identities=9% Similarity=0.027 Sum_probs=37.5
Q ss_pred EEEeCCCccHHHHHHHHHHHhC-CC---------CcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018 14 LLDVSEDLELENFKAFCEVQSG-IS---------AQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 14 ~leV~~~~tV~~LK~~Ie~e~g-ip---------~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
.++++. .||.+|.+.+..... +. ...-.+..||+..... .=.++-+++||.|.+..
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~--~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYL--QGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGT--TGGGCBCCTTCEEEEEC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCc--CCCccCCCCCCEEEEEC
Confidence 456766 899999999877631 10 1233567799887531 22345699999999875
No 281
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=32.29 E-value=76 Score=31.91 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=41.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHHh--CCCCc--------ceEEEECCe--ee-----CCCcCCccccCCCCCCEEEEEE
Q psy8018 12 CFLLDVSEDLELENFKAFCEVQS--GISAQ--------EIAIEFQGN--AL-----VDNKKTLKDYNIQDGDLVLLKR 72 (280)
Q Consensus 12 ~~~leV~~~~tV~~LK~~Ie~e~--gip~~--------~Q~Li~~Gk--~L-----~d~~~tL~~~gI~~gd~l~l~~ 72 (280)
...++++++.|+.+|-+.+..+. ++... ...++|... .| .+-+++|+++|+++|+.|.+.-
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 790 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 790 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEEC
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEEc
Confidence 45688988999999888777753 33221 146666532 11 1234799999999999998865
No 282
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=32.03 E-value=39 Score=27.69 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=20.7
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHH
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKA 28 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~ 28 (280)
.|+++ .+|+.++++++|++|+.++-.
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR 30 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIR 30 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHH
Confidence 45554 489999999999999988643
No 283
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=31.43 E-value=1.1e+02 Score=22.40 Aligned_cols=58 Identities=5% Similarity=0.112 Sum_probs=40.7
Q ss_pred EEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCcccc--CCCCCCEEEEEEe
Q psy8018 14 LLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY--NIQDGDLVLLKRV 73 (280)
Q Consensus 14 ~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~--gI~~gd~l~l~~~ 73 (280)
-+-|+.+.|++.+...|....++ +..-|+-|+.-+...+.++++. .-+++..|.+...
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys 85 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYC 85 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEe
Confidence 35699999999999999999998 4555666876555444676643 1225667777653
No 284
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=30.00 E-value=70 Score=23.67 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=34.3
Q ss_pred CcEEEEEeCCCccHHHHHHHHHHHhCCCCcce-EEEECCee
Q psy8018 10 NECFLLDVSEDLELENFKAFCEVQSGISAQEI-AIEFQGNA 49 (280)
Q Consensus 10 g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q-~Li~~Gk~ 49 (280)
...+++.|+++.+=-++|+.+|.-+++.+..- .+...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 46899999999999999999999999998754 45677764
No 285
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=29.27 E-value=63 Score=32.11 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=37.9
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCC-cceEEEE
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISA-QEIAIEF 45 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~-~~Q~Li~ 45 (280)
|.+.|..++|....++|++.+|+.+|-..|....|+.. +-.-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 35678889999999999999999999999999999853 4556655
No 286
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=27.92 E-value=50 Score=26.90 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=20.4
Q ss_pred EEEEEcCCCcEEEEEeCCCccHHHHHH
Q psy8018 2 KVTVTSLDNECFLLDVSEDLELENFKA 28 (280)
Q Consensus 2 ~ItV~~~~g~~~~leV~~~~tV~~LK~ 28 (280)
.|+++ .+|+.++++++|++|+.++-.
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR 30 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLR 30 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHH
Confidence 44554 489999999999999988643
No 287
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=27.59 E-value=51 Score=26.76 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=20.9
Q ss_pred CEEEEEcCCCcEEEEEeCCCccHHHHHH
Q psy8018 1 MKVTVTSLDNECFLLDVSEDLELENFKA 28 (280)
Q Consensus 1 M~ItV~~~~g~~~~leV~~~~tV~~LK~ 28 (280)
|.|+++. +|+.++++++++.||.++-.
T Consensus 10 m~i~~~i-ng~~~~~~v~~~~tlL~~Lr 36 (168)
T 1t3q_A 10 MRISATI-NGKPRVFYVEPRMHLADALR 36 (168)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHH
T ss_pred ceEEEEE-CCEEEEEecCCCCcHHHHHH
Confidence 4455544 89999999999999988644
No 288
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=27.06 E-value=69 Score=23.31 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=29.2
Q ss_pred CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceE
Q psy8018 10 NECFLLDVSEDLELENFKAFCEVQSGISAQEIA 42 (280)
Q Consensus 10 g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~ 42 (280)
...+++.|+++.+=.++|+.+|.-+|+.+..-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 468999999999999999999999999876543
No 289
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=26.62 E-value=1.4e+02 Score=21.89 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=33.8
Q ss_pred CcEEEEEeCCCccHHHHHHHHHHHhCCCCcce-EEEECCee
Q psy8018 10 NECFLLDVSEDLELENFKAFCEVQSGISAQEI-AIEFQGNA 49 (280)
Q Consensus 10 g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q-~Li~~Gk~ 49 (280)
...+++.|+++.+=.++|+.+|.-+++.+..- .+...|+.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 47899999999999999999999999988654 35667654
No 290
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=25.38 E-value=74 Score=23.64 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=31.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhCCCCcceE-EEECCe
Q psy8018 12 CFLLDVSEDLELENFKAFCEVQSGISAQEIA-IEFQGN 48 (280)
Q Consensus 12 ~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~-Li~~Gk 48 (280)
.+++.|+++.|=.++|+.+|.-+|+.+..-. +...|+
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 3999999999999999999999999986544 445654
No 291
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=24.85 E-value=60 Score=23.18 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=24.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHHhCCC
Q psy8018 12 CFLLDVSEDLELENFKAFCEVQSGIS 37 (280)
Q Consensus 12 ~~~leV~~~~tV~~LK~~Ie~e~gip 37 (280)
.+++-|+++.+..+|..+|..+++.+
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 67899999999999999999999975
No 292
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=22.01 E-value=2e+02 Score=21.03 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=29.5
Q ss_pred EEEE-cCCCcEEEEEeCC--CccHHHHHHHHHHHhCCC
Q psy8018 3 VTVT-SLDNECFLLDVSE--DLELENFKAFCEVQSGIS 37 (280)
Q Consensus 3 ItV~-~~~g~~~~leV~~--~~tV~~LK~~Ie~e~gip 37 (280)
++++ +-.|.+..+-|+. +.|.++|.+++..-+|++
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~ 44 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN 44 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC
Confidence 4555 3578999988876 999999999999999997
No 293
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.50 E-value=1.1e+02 Score=22.35 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceE
Q psy8018 10 NECFLLDVSEDLELENFKAFCEVQSGISAQEIA 42 (280)
Q Consensus 10 g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~ 42 (280)
...+++.|+++.+=.++|+.+|.-+++.+..-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VN 55 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVN 55 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEE
Confidence 568999999999999999999999999876543
No 294
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=20.97 E-value=2.4e+02 Score=20.25 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=28.9
Q ss_pred hcCCCCHHHHHHHHHHHHhhhHHHHHHHhHhh-CCCcceeeeEEEEEEEEcCEEEEEEE
Q psy8018 108 TADPFDTEAQKLIAEEIKKSNIQANMEAAMEY-NPETFGSVIMLYINCRVNGHPVKAFI 165 (280)
Q Consensus 108 ~~dp~~~e~q~~i~e~i~q~~i~~~~~~a~e~-~Pe~~~~~~~l~i~~~InG~~v~alV 165 (280)
..+|++||.-++.. ..|++- +||.|-.|.-+| ..|.+++.++
T Consensus 36 ~L~~dePEvaa~AL------------~~A~eapn~EGwP~VYALF----lqGr~lRLll 78 (90)
T 2dbs_A 36 LLPLDEPEVAAQAL------------AWAMEAPNPEGWPSVYALF----LQGRPIRLLL 78 (90)
T ss_dssp EEETTCHHHHHHHH------------HHHHSCCCSSSSCEEEEEE----ETTEEEEEEE
T ss_pred ecCCCCHHHHHHHH------------HHHHhCCCCCCChhHHHHH----hCCceeEEee
Confidence 36889998765533 356765 999998777665 3677776654
Done!