RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8018
(280 letters)
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 56.6 bits (136), Expect = 3e-11
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 1 MKVTVT----SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKT 56
M +TV L F L V+ D EL NF+ CE++SG+ A+E I + L D+ +
Sbjct: 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67
Query: 57 LKDYNIQDGDLVLLKRVQVARTSNPS 82
L Y ++DGD+V+L + P
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPG 93
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 52.9 bits (127), Expect = 3e-10
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
++V V +LD++ V + ++ FK I +++ + +QG L D+ K L++Y
Sbjct: 1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEY 59
Query: 61 NIQDGDLVLLKR 72
N+ + L++R
Sbjct: 60 NVGGKVIHLVER 71
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 52.7 bits (126), Expect = 1e-09
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQE---------------IAIEF 45
M V V +D E + V ++ + + K + + + +
Sbjct: 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67
Query: 46 QGNALVDNKKTLKDYNIQDGD-LVLLKRVQ 74
G L +++K L+DY I++ D + +K++
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLG 97
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 52.3 bits (125), Expect = 1e-09
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
VTV + ++++ D FKA +G+ + +G L D+ +
Sbjct: 8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWGNI 65
Query: 61 NIQDGD-LVLLKRVQ------VARTSNPS 82
+++G ++++ A+TS PS
Sbjct: 66 KMKNGMTVLMMGSADALPEEPSAKTSGPS 94
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like
protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 52.2 bits (125), Expect = 1e-09
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
++V V + D + ++ + + K E Q G+ ++ +EFQG L D L Y
Sbjct: 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGIY 66
Query: 61 NIQDGD-LVLLKRVQVARTS 79
IQD D L+L K+ +S
Sbjct: 67 GIQDSDTLILSKKKGSGPSS 86
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 50.9 bits (122), Expect = 2e-09
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
+ + + S ++ + ++V+ + + FK +GI + + G L D+ +T++ Y
Sbjct: 2 LNIHIKSGQDK-WEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESY 59
Query: 61 NIQDGDLVLL 70
+IQDG V L
Sbjct: 60 HIQDGHSVHL 69
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 51.2 bits (122), Expect = 3e-09
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCE---VQSGISAQEIAIEFQGNALVDNKKTL 57
M+VT+ +L + F +D+ + ++ K E + + + G L D+ L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDT-AL 59
Query: 58 KDYNIQDGD--LVLLKRVQVARTSNPS 82
K+Y I + + +V++ + + T P+
Sbjct: 60 KEYKIDEKNFVVVMVTKPKAVSTPAPA 86
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 50.3 bits (120), Expect = 3e-09
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
M++ V +L + L+V +EN KA + + GI + + F G L D +TL DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 59
Query: 61 NIQDGDLVLL 70
NIQ + L
Sbjct: 60 NIQKESTLHL 69
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 73
Score = 49.1 bits (117), Expect = 1e-08
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
M + V +L + +D+ ++ K E + GI + + + G L D+ KT KDY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADD-KTAKDY 59
Query: 61 NIQDGDLVLL 70
NI+ G ++ L
Sbjct: 60 NIEGGSVLHL 69
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 47.5 bits (113), Expect = 4e-08
Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSG---ISAQEIAIEFQGNALVDNKKTL 57
+ +T+ +L + F + + D ++ K E + G + + G L D+ +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDV-PI 61
Query: 58 KDYNIQDGDLVLL 70
+DY I + + V++
Sbjct: 62 RDYRIDEKNFVVV 74
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 47.6 bits (113), Expect = 5e-08
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 1 MKVTVTS-LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGN------ALVDN 53
+ V ++S L++ S L + FK E+ G A + +E G L
Sbjct: 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67
Query: 54 KKTLKDYNIQDGDLVLL 70
L Y + DG + +
Sbjct: 68 DALLGSYPVDDGCRIHV 84
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
(2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 47.2 bits (112), Expect = 7e-08
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
+ V + L++ L + + K+ ++ + +QG L D +TL
Sbjct: 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSL 64
Query: 61 NIQDGD-LVLLKRVQVARTSNPS 82
NI + + + A S PS
Sbjct: 65 NITNNCVIHCHRSPPGAAVSGPS 87
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 46.8 bits (111), Expect = 8e-08
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 1 MKVTVTS----LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKT 56
+ VTVT D S + +++ E G+ + F+G +L + +
Sbjct: 2 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 61
Query: 57 LKDYNIQDGDLVLL 70
L IQDG V+L
Sbjct: 62 LSALGIQDGCRVML 75
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 46.0 bits (109), Expect = 1e-07
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 1 MKVTVTSLD--NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLK 58
M + V ++D C + DVS +E + + + + ++G L + TL
Sbjct: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGY-TLF 59
Query: 59 DYNIQDGDLVLL 70
DY++ D++ L
Sbjct: 60 DYDVGLNDIIQL 71
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 45.6 bits (108), Expect = 1e-07
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
+ + V + +V + + K G+ + F+G L D L +Y
Sbjct: 4 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEY 62
Query: 61 NIQDGDLVLL 70
++ V +
Sbjct: 63 GLKPLSTVFM 72
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
domain-containing protein 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 45.3 bits (107), Expect = 2e-07
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 1 MKVTVTSLD--NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLK 58
M + V ++D + +S ++E + + + + ++G + D TL
Sbjct: 1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLF 59
Query: 59 DYNIQDGDLVLL 70
DY ++ D + L
Sbjct: 60 DYEVRLNDTIQL 71
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 78
Score = 44.9 bits (106), Expect = 3e-07
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
M V V + F ++V D + K + G+ A ++ + F G L ++ T+++
Sbjct: 3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNH-LTVQNC 61
Query: 61 NIQDGDLVLL 70
+++ +V +
Sbjct: 62 DLEQQSIVHI 71
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 77
Score = 44.7 bits (106), Expect = 4e-07
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
+K+ V D+ V L+ K + G+ + F+G + DN T K+
Sbjct: 3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKEL 61
Query: 61 NIQDGDLV 68
+++ D++
Sbjct: 62 GMEEEDVI 69
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 44.2 bits (104), Expect = 8e-07
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
+KVTV + E V E+ ++ FK + ++ + F G L D TL +
Sbjct: 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQD-TLIQH 90
Query: 61 NIQDGDLVLL 70
I DG V L
Sbjct: 91 GIHDGLTVHL 100
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 42.6 bits (100), Expect = 2e-06
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALV-DNKKTLKDYN 61
+TV L F + +S + + KA + G+ A + + + + ++ L
Sbjct: 3 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 62
Query: 62 IQDGDLVLL 70
+ G VLL
Sbjct: 63 LGPGSTVLL 71
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 43.1 bits (101), Expect = 2e-06
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
++V + + + D + + K Q+G +I ++ + +L DY
Sbjct: 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIF-KDHVSLGDY 87
Query: 61 NIQDGDLVLL 70
I DG + L
Sbjct: 88 EIHDGMNLEL 97
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 42.7 bits (100), Expect = 3e-06
Identities = 10/73 (13%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQE---IAIEFQGNALVDNKKTL 57
+ + V E + +SED + + K F + +G+ + + ++ +G ++ L
Sbjct: 8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND-VKL 66
Query: 58 KDYNIQDGDLVLL 70
++ +++
Sbjct: 67 GALKLKPNTKIMM 79
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 41.5 bits (97), Expect = 6e-06
Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
+KVTV + ++ V++ ++ K + ++ + F G ++ + +L
Sbjct: 8 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGK-ILKDPDSLAQC 65
Query: 61 NIQDGDLVLLKRVQVARTSNPS 82
++DG V L V + + +
Sbjct: 66 GVRDGLTVHL----VIKRQHRA 83
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 41.1 bits (96), Expect = 8e-06
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
++ + + L V + + K G+ F G L +K ++
Sbjct: 4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPL-TDKMKFEEL 62
Query: 61 NIQDGD---LVLLKRVQ 74
I +++ + VQ
Sbjct: 63 KIPKDYVVQVIVSQPVQ 79
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 83
Score = 40.4 bits (94), Expect = 1e-05
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
++V+V + + ++E+ + FK +A + + F G L ++ L
Sbjct: 11 IRVSVKTPQDC-HEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKIL-RDQDILSQR 68
Query: 61 NIQDGDLVLL 70
I DG V +
Sbjct: 69 GILDGSTVHV 78
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 39.9 bits (93), Expect = 2e-05
Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 8 LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDL 67
L+ + + + ++ K +G+ A + ++++G + D+ +L YN+ +G +
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSN-SLAYYNMANGAV 77
Query: 68 VLL 70
+ L
Sbjct: 78 IHL 80
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 100
Score = 40.0 bits (93), Expect = 3e-05
Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
+ + + LL+ + ++ G+ I I L K ++
Sbjct: 20 VFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTL-EEQ 78
Query: 61 NIQDGDLVLLKRVQVARTSNPS 82
+ ++ +++ ++S PS
Sbjct: 79 GVAHNVKAMV--LELKQSSGPS 98
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 39.6 bits (92), Expect = 6e-05
Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 9/95 (9%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQ--------SGISAQEIAIEFQGNALVD 52
+ + + + + S + + S + + +QG L
Sbjct: 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76
Query: 53 NKKTLKDYNIQDGDLVLLKRVQVARTSNPSDDFAR 87
N TL + G ++ V P+ R
Sbjct: 77 NV-TLGALKLPFGKTTVMHLVARETLPEPNSQGQR 110
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 38.7 bits (90), Expect = 7e-05
Identities = 11/94 (11%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 1 MKVTVT-----SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNAL----- 50
+T+ + + + + + ++ K + E+ + ++ + +
Sbjct: 8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREI 67
Query: 51 --VDNKKTLKDYNIQDGDLVLLKRVQVARTSNPS 82
++ + L+ Y++++GD +L++ S PS
Sbjct: 68 ELENDLQPLQFYSVENGDCLLVRW------SGPS 95
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 38.8 bits (90), Expect = 7e-05
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
+ + + + + V D K +G+ + ++G V KTL++
Sbjct: 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL--VPEDKTLREI 74
Query: 61 NIQDGDLVLL 70
+ G +++
Sbjct: 75 KVTSGAKIMV 84
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 38.7 bits (90), Expect = 9e-05
Identities = 13/76 (17%), Positives = 17/76 (22%), Gaps = 1/76 (1%)
Query: 13 FLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72
D E + K E E + L D KTL +
Sbjct: 13 IFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAP 71
Query: 73 VQVARTSNPSDDFARI 88
V D F +
Sbjct: 72 ATVGLAFRADDTFEAL 87
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 37.9 bits (88), Expect = 1e-04
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 1 MKVTVTSLDN--ECFLLDVSEDLELENFKAFCE--VQSGISAQEIAIEFQGNALVDNKKT 56
+ + V S + L + + KA ++ + + G L+D++
Sbjct: 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ-C 66
Query: 57 LKDYNIQDGDLVLLKRVQVARTSNPS 82
L+D + +L V ++ S
Sbjct: 67 LRDLLPKQEKRHVLHLVCNVKSGPSS 92
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 37.5 bits (87), Expect = 2e-04
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 5 VTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGN------ALVDNKKTLK 58
T+ + + L + K E+ G + + I+ L D K+LK
Sbjct: 10 TTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLK 69
Query: 59 DYNIQDGDLVLLKRVQVARTSNPSD 83
D ++DG + V T D
Sbjct: 70 DLGVRDGYRIHA----VDVTGGNED 90
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 73
Score = 37.0 bits (85), Expect = 2e-04
Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
++V V + + + + +FK +Q G +I ++ +++ + +L+DY
Sbjct: 2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKG-GSVLKDHISLEDY 60
Query: 61 NIQDGDLVLL 70
+ D + L
Sbjct: 61 EVHDQTNLEL 70
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
(Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Length = 79
Score = 36.7 bits (85), Expect = 3e-04
Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
+ + V+ +E F + + L + G + + G + ++ T +D
Sbjct: 5 INLKVSDGSSEIFF-KIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ-TPEDL 62
Query: 61 NIQDGDLV 68
+++D D++
Sbjct: 63 DMEDNDII 70
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 111
Score = 35.0 bits (80), Expect = 0.002
Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 1 MKVTVTSLDN-ECFLLDV-SEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLK 58
++V+ + ++ + + V S + + K + I A + + + + +L
Sbjct: 30 IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG-KAGFLKDNMSLA 88
Query: 59 DYNIQDGDLVLL 70
YN+ G+++ L
Sbjct: 89 HYNVGAGEILTL 100
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus
[TaxId: 11665]}
Length = 104
Score = 32.4 bits (74), Expect = 0.012
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 154 CRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQI 213
+N P+ +D+GA T++++ A N + ++ G+G +
Sbjct: 13 VLINDTPLNVLLDTGADTSVLT---TAHYNRLKYRGRKY--QGTGIGGVGGNVETFSTPV 67
Query: 214 AIENDFLTTSFSVL-EDQPMDMLLGLDML 241
I+ +L D P+ +LG D+L
Sbjct: 68 TIKKKGRHIKTRMLVADIPVT-ILGRDIL 95
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 30.9 bits (70), Expect = 0.023
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
+ + V D + L + G+S ++I F G + + T
Sbjct: 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQL 60
Query: 61 NIQDGDLV 68
++D D +
Sbjct: 61 EMEDEDTI 68
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 30.7 bits (69), Expect = 0.056
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 1 MKVTVTSLDN-ECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE-------FQGNALVD 52
+++ D + + + K + + G L +
Sbjct: 8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67
Query: 53 NKKTLKDYNIQDGDL 67
+K T+KDY +L
Sbjct: 68 SK-TVKDYRSPVSNL 81
>d1nsoa_ b.50.1.1 (A:) Mason-Pfizer monkey virus protease {Simian
retrovirus 1, SRV-1 [TaxId: 11942]}
Length = 107
Score = 29.7 bits (67), Expect = 0.14
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 17/97 (17%)
Query: 152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMV 211
+ ++ I++GA TI+ W ++ I +
Sbjct: 12 LTLWLDDKMFTGLINTGADVTIIK---------LEDWPPNWPITDTLTNLRGIGQSNNPK 62
Query: 212 Q-------IAIENDFLTTSFSVLEDQPMDMLLGLDML 241
Q EN+ V+ + P++ L G D+L
Sbjct: 63 QSSKYLTWRDKENNSGLIKPFVIPNLPVN-LWGRDLL 98
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease
{Feline immunodeficiency virus [TaxId: 11673]}
Length = 113
Score = 29.3 bits (66), Expect = 0.17
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMV 211
I VNG+P+K +D+GA TI++ + + + + G
Sbjct: 13 ILIFVNGYPIKFLLDTGADITILNRRD---------FQVKNSIENGRQNMIGVGGGKRGT 63
Query: 212 ---QIAIEND-------FLTTSFSVLEDQPMDM-LLGLDML 241
+ +E + + VLED + LLG D +
Sbjct: 64 NYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNM 104
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 28.3 bits (63), Expect = 0.37
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 45 FQGNALVDNKKTLKDYNIQDGD-LVLLKR 72
+ G L D++ TL Y IQ G + +L++
Sbjct: 65 YCGRKLKDDQ-TLDFYGIQPGSTVHVLRK 92
>d2pmaa1 b.50.1.3 (A:26-166) Uncharacterized protein LPG0085
{Legionella pneumophila [TaxId: 446]}
Length = 141
Score = 26.8 bits (59), Expect = 1.9
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 28/127 (22%)
Query: 158 GHPVKAFIDSGAQTTIMSAA-------------------------CAARVNITRLIDTRW 192
+ A +D+GA++ + A I R
Sbjct: 14 NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRS 73
Query: 193 AGIAKGVGVQRIIGRIHM-VQIAIENDFLTTSFSVLEDQPMD--MLLGLDMLKRHQVQIA 249
+ G+ I R + + I + + T ++ + +LLG D + +
Sbjct: 74 SETNPGLLRTTPIKRPVVLLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVD 133
Query: 250 IENDFLT 256
F T
Sbjct: 134 PALTFTT 140
>d2rspa_ b.50.1.1 (A:) Rous sarcoma virus protease {Rous sarcoma
virus, strain pr-C [TaxId: 11886]}
Length = 124
Score = 25.9 bits (57), Expect = 3.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 155 RVNGHPVKAFIDSGAQTTIMS 175
+ + A +DSGA TI+S
Sbjct: 26 KQRSVYITALLDSGADITIIS 46
>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease
{Human immunodeficiency virus type 1 [TaxId: 11676]}
Length = 203
Score = 26.1 bits (58), Expect = 4.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 152 INCRVNGHPVKAFIDSGAQTTI 173
+ R+ G +A +D+GA T+
Sbjct: 11 VTIRIGGQLKEALLDTGADDTV 32
>d1ehxa_ b.1.18.13 (A:) Cellulosomal scaffoldin protein CipC,
module x2.1 {Clostridium cellulolyticum [TaxId: 1521]}
Length = 94
Score = 24.8 bits (54), Expect = 5.1
Identities = 6/49 (12%), Positives = 12/49 (24%), Gaps = 2/49 (4%)
Query: 33 QSGISAQEIAIEFQGNALVDNKKTL-KDYNIQDGDLVLLKRVQVARTSN 80
+ +I + GN + Y + V L +
Sbjct: 15 AGSFADTKITLTPNGNTFNGISELQSSQYTK-GTNEVTLLASYLNTLPE 62
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein,
C-terminal domain {Fission yeast (Schizosaccharomyces
pombe) [TaxId: 4896]}
Length = 82
Score = 24.3 bits (53), Expect = 6.0
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 58 KDYNIQDGDLVLLK 71
K+Y ++ GD+ K
Sbjct: 69 KEYVMESGDIAHWK 82
>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 90
Score = 24.6 bits (54), Expect = 6.1
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 145 GSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACA---ARVNITRLIDTRW----AGIAK 197
G V+ML I + + A + CA RV I+R + +RW G +
Sbjct: 30 GEVLMLNIGTATTAGVITSARGDIADIKLKLPICAEIGDRVAISRRVGSRWRLIGYGTIE 89
Query: 198 G 198
G
Sbjct: 90 G 90
>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 556
Score = 26.0 bits (56), Expect = 7.0
Identities = 9/55 (16%), Positives = 24/55 (43%)
Query: 98 KREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYI 152
E+ R+ + A + ++L+ ++ + N N + P G+++ +Y
Sbjct: 440 STEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFTKLTPFMLGALVAMYE 494
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein,
C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 24.3 bits (53), Expect = 7.6
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 58 KDYNIQDGDLVLLK 71
KDY +QDGD++ +
Sbjct: 69 KDYIVQDGDVMHFR 82
>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania
mexicana [TaxId: 5665]}
Length = 561
Score = 25.6 bits (55), Expect = 8.3
Identities = 9/56 (16%), Positives = 23/56 (41%)
Query: 97 EKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYI 152
+ E++RQ ++ + + +I + + +N P G++I +Y
Sbjct: 447 KNAEEVRQELVKSGMSGDAIENMIPHKTFTGSRPSNSILVNALTPRALGAIIAMYE 502
>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit
{Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 89
Score = 23.8 bits (52), Expect = 9.8
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 13/65 (20%)
Query: 145 GSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACA---ARVNITRLIDTRWAGIAKGVGV 201
V++L + V + + CA RV I+R I +RW
Sbjct: 29 KEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQIGSRW--------- 79
Query: 202 QRIIG 206
R+IG
Sbjct: 80 -RLIG 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.373
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,005,096
Number of extensions: 46368
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 65
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)