BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8023
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
M+A ALELL D L GAK LD+GSGSG LTACFA +VG G+V ++ I E++ + N+
Sbjct: 63 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV 122
Query: 62 QQGNPELLPNIKFEPQTGEGDIQY 85
++ +P LL + + + G+G + Y
Sbjct: 123 RKDDPTLLSSGRVQLVVGDGRMGY 146
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-----EVTAVELIPEVLQF 56
M+A ALE L+D+LKPGA++LD+GSGSGYLTACF + + G + +E E+++
Sbjct: 70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRR 129
Query: 57 THYNIQQGNPELL 69
+ N+ + +L
Sbjct: 130 SKANLNTDDRSML 142
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFAD----LVGSNGEVTAVELIPEVLQFT 57
M+A +L+ L + LKPG++ +D+GSGSGYLT C A L N V +E + +++ F+
Sbjct: 66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFS 125
Query: 58 HYNIQQGNPELL 69
NI++ PELL
Sbjct: 126 LENIKRDKPELL 137
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+LKPG KVL+IG+G GY A A++VG +G V ++E IPE+ + +++
Sbjct: 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
NLKPG +L++G+GSG+ A +++V ++ V +E IPE+++F N+++
Sbjct: 88 NLKPGMNILEVGTGSGWNAALISEIVKTD--VYTIERIPELVEFAKRNLERA 137
>pdb|3BKX|A Chain A, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
Length = 275
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
+KPG K+L+IG G G L+A AD VGS+G VT +++
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDI 76
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELI 50
M AR ELL+ L P ++VL+IG+GSGY TA A LV V +VE I
Sbjct: 65 MVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERI 108
>pdb|2IPX|A Chain A, Human Fibrillarin
Length = 233
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
++KPGAKVL +G+ SG + +D+VG +G V AVE
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF 110
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
+L PG +VL+ G+GSG LT A VG G V + E P L N++
Sbjct: 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVR 142
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
L G +VL+IG G+GY A + +VG G V +VE ++ + N+++
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER 122
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
LK G VLD+G+G+G+ + +VG G+V A+++ E++ + + +
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK 84
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
AL+ L +L+PG KVLD+G+GSG L A A+ +G G+ V++ P VL N ++
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANAKR 164
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
AL+ L +L+PG KVLD+G+GSG L A A+ +G G+ V++ P VL N ++
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANAKR 164
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+KPG VL +G SG + +D+VG G++ +E P VL+
Sbjct: 78 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLR 119
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+KPG VL +G SG + +D+VG G++ +E P VL+
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLR 112
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
++K G +++D G GSG + A A VGS+G+V A E E + N+ +
Sbjct: 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 159
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+KPG VL +G SG + +D+VG G++ +E P VL+
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLR 112
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELL 69
LK NL +VL+ G+GSG L A +++ GEV E + E + N+++ N L
Sbjct: 85 LKLNLNKEKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFN--LG 139
Query: 70 PNIKF 74
N+KF
Sbjct: 140 KNVKF 144
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVE 48
PGA+VL+ G+GSG LT VG G+V + E
Sbjct: 99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYE 131
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 12 DNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
+ L AK+ DIG G+G T AD V G++T ++L P+ ++ + N + N
Sbjct: 42 NELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKAN 93
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 12 DNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
+ L AK+ DIG G+G T AD V G++T ++L P+ ++ + N + N
Sbjct: 48 NELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKAN 99
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKF 74
PGAKVL+ G G G T A + E+T++++ PE L+ N ++ + N+KF
Sbjct: 37 PGAKVLEAGCGIGAQTVILAK-NNPDAEITSIDISPESLEKARENTEKNG---IKNVKF 91
>pdb|3ID5|B Chain B, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|F Chain F, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID6|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
And Fibrillarin Complex
pdb|3PLA|E Chain E, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|F Chain F, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|M Chain M, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 232
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 7 LELLKDN-LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
L+ LK N ++ G KVL +G+ SG + +D++ NG+ VE P V++ + Q
Sbjct: 66 LKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVR-ELLLVAQRR 124
Query: 66 PELLP 70
P + P
Sbjct: 125 PNIFP 129
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+K G ++L +G SG + +D++G G + VE P V++
Sbjct: 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMR 116
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
+ PG +++ G GSG LT A++VG G V + E+ + + NI+
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA 141
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
+ PG +++ G GSG LT A++VG G V + E+ + + NI+
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA 141
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
++ PG VL+ GSGSG ++ + VGS G V + E+
Sbjct: 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEV 138
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
+L G KVL+IG+G GY TA A++V +V +VE+
Sbjct: 67 DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEI 100
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 32.3 bits (72), Expect = 0.070, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ----FTHYNIQQ--GNPELLP 70
GA VLD+G G+G + LVG +G+V V+++ L+ + Y+ ++ G+P
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS-RS 142
Query: 71 NIKF 74
N++F
Sbjct: 143 NVRF 146
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 12 DNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
+ ++PG ++ DIG G+G T AD + EVT V+L E L+ + N
Sbjct: 29 EQVEPGKRIADIGCGTGTATLLLAD----HYEVTGVDLSEEXLEIAQEKAXETN 78
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
A+ LK G +V+D+G+GSG + A L VTAV+L + L N ++
Sbjct: 21 AIRFLK-RXPSGTRVIDVGTGSGCIAVSIA-LACPGVSVTAVDLSXDALAVARRNAER 76
>pdb|3EVZ|A Chain A, Crystal Strucure Of Methyltransferase From Pyrococcus
Furiosus
Length = 230
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
LK L+ G L+IG+G A A+ N +VTA E+ E ++ NI++ N
Sbjct: 48 FLKTFLRGGEVALEIGTGHTAXXALXAEKF-FNCKVTATEVDEEFFEYARRNIERNN 103
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
NLK V +IG+G G+LT A + + +VT++EL
Sbjct: 26 NLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIEL 59
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
KPG V+D+G+ G + +G G + A +L+P
Sbjct: 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP 57
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 11 KDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
K L+P VL++G G+G +T L+ +V A EL P ++ H + QG P
Sbjct: 23 KAALRPTDVVLEVGPGTGNMT---VKLLEKAKKVVACELDPRLVAELHKRV-QGTP 74
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACF----ADLVGSNGEVTAVELIPEVLQFTHYNI 61
L+LL N +PG +LD+G G+G LT A+++G++ T +E + H+++
Sbjct: 50 LQLL--NPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATXIEKARQNYPHLHFDV 106
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
+E+ D G V+D G+G+G L AC + L+G+ VTA ++ P+ ++ N
Sbjct: 42 IEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGAE-SVTAFDIDPDAIETAKRN 93
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 19 KVLDIGSGSGYLTACFA----DLVGSNGEVTAVELIPEVLQ---FTHYNIQQGNPELLP 70
+VLDIG+G+G+ F+ + +G + VE+ Q + QQG E LP
Sbjct: 24 RVLDIGAGAGHTALAFSPYVQECIGVDATKEXVEVASSFAQEKGVENVRFQQGTAESLP 82
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With
Dioctylamine
Length = 302
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSG 28
R L L K NL+PG +LDIG G G
Sbjct: 61 RKLALDKLNLEPGMTLLDIGCGWG 84
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
++ + +K +K G V+D G+G TA A LVG NG V ++
Sbjct: 11 QSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDI 55
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVE 48
+++ L+PG +L++G GSG ++ + G +T VE
Sbjct: 103 IMRCGLRPGXDILEVGVGSGNXSSYILYALNGKGTLTVVE 142
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 28.5 bits (62), Expect = 0.96, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 20 VLDIGSGSGYLTACFAD 36
VLDIG G GY T FAD
Sbjct: 89 VLDIGCGEGYYTHAFAD 105
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 15 KPGAKVLDIGSGSGYLTACFADLVGSNG 42
KPG ++LD+GSGSG +A G G
Sbjct: 35 KPGTRILDLGSGSGEXLCTWARDHGITG 62
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
L +LK G VLD+G G+LT A G + V +++ ++ NI+
Sbjct: 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRXV-GLDIDSRLIHSARQNIRH--- 92
Query: 67 ELLPNIKFEPQTGEGD 82
L ++ PQT EGD
Sbjct: 93 YLSEELRLPPQTLEGD 108
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 8 ELLKDNLKP--GAKVLDIGSGSGYLTACFA 35
+LL L P KVLD+G G+G L+ FA
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFA 215
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 17 GAK-VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFE 75
GA+ +L+IG+ GY T A + S G V +E + NI++ N N + E
Sbjct: 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN----LNDRVE 113
Query: 76 PQTG 79
+TG
Sbjct: 114 VRTG 117
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 7 LELLKDNLKP----GAKVLDIGSGSGYLTACFADLVGSNGEVTAVE 48
LE L++ L P G +VLD+G+G G LT A + EV VE
Sbjct: 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVE 262
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 7 LELLKDNLKP----GAKVLDIGSGSGYLTACFADLVGSNGEVTAVE 48
LE L++ L P G +VLD+G+G G LT A + EV VE
Sbjct: 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVE 262
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 17 GAK-VLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
GAK +++IG+ +GY + CFA + +G++ ++ E
Sbjct: 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEE 96
>pdb|3E8S|A Chain A, Crystal Structure Of Putative Sam Dependent
Methyltransferase In Complex With Sah (Np_744700.1)
From Pseudomonas Putida Kt2440 At 2.10 A Resolution
Length = 227
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 19 KVLDIGSGSGYLTACFAD----LVGSNGEVTAVE 48
+VLD+G G G+L AD VG +G+ T V+
Sbjct: 55 RVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVD 88
>pdb|2I22|A Chain A, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|B Chain B, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|C Chain C, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|D Chain D, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I2W|A Chain A, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|B Chain B, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|C Chain C, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|D Chain D, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
Length = 212
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTA 32
RA LL D+ K G KVL G+G + A
Sbjct: 52 RAAVLLADSFKAGGKVLSCGNGGSHCDA 79
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQ 55
NA LLK K +VLDIG SG L A + NG V+ +E PE +
Sbjct: 19 NAVNPNLLKHIKKEWKEVLDIGCSSGALGAA----IKENGTRVSGIEAFPEAAE 68
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 30 LTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE 80
LT+ + + G +A + I V +HY QQG L N + E + E
Sbjct: 410 LTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNE 460
>pdb|3DPC|A Chain A, Structure Of E.Coli Alkaline Phosphatase Mutant In Complex
With A Phosphorylated Peptide
pdb|3DPC|B Chain B, Structure Of E.Coli Alkaline Phosphatase Mutant In Complex
With A Phosphorylated Peptide
Length = 455
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPNI 72
G P+ + ++
Sbjct: 93 TGKPDYVTDL 102
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bh2331) From Bacillus Halodurans C-125 At 1.95 A
Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase
(Bh2331) From Bacillus Halodurans C-125 At 1.95 A
Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase
(Bh2331) From Bacillus Halodurans C-125 At 1.95 A
Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase
(Bh2331) From Bacillus Halodurans C-125 At 1.95 A
Resolution
Length = 260
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ----------Q 63
LK +VLD+ +G G++ FA V +V A +L ++L+ I+ Q
Sbjct: 35 LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ 91
Query: 64 GNPELLP 70
G+ E P
Sbjct: 92 GDAEQXP 98
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+AL + DNL + + DIG G+G T A V G+VT ++ + + + N +Q
Sbjct: 36 KALSFI-DNLTEKSLIADIGCGTGGQTXVLAGHV--TGQVTGLDFLSGFIDIFNRNARQ 91
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 7 LELLKDNLKPGAKVLDIGSGSG 28
L L K NL+PG +LDIG G G
Sbjct: 55 LALGKLNLEPGMTLLDIGCGWG 76
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 7 LELLKDNLKPGAKVLDIGSGSG 28
L L K +LKPG +LDIG G G
Sbjct: 81 LNLDKLDLKPGMTLLDIGCGWG 102
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+D+G G+G +T +L G V A++ PE + T N+Q+
Sbjct: 38 VDVGCGTGGVTL---ELAGRVRRVYAIDRNPEAISTTEXNLQR 77
>pdb|1URB|A Chain A, Alkaline Phosphatase (N51mg)
pdb|1URB|B Chain B, Alkaline Phosphatase (N51mg)
pdb|1URA|A Chain A, Alkaline Phosphatase (D51zn)
pdb|1URA|B Chain B, Alkaline Phosphatase (D51zn)
Length = 446
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG+G G +TA G+ G ++ +P Q+THY N +
Sbjct: 30 LRDSLSDKPAKNIILLIGNGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 89
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 90 TGKPDYVTD 98
>pdb|3BDG|B Chain B, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI
ALKALINE Phosphatase
Length = 458
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 34 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 93
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 94 TGKPDYVTD 102
>pdb|3BDF|A Chain A, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDF|B Chain B, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDG|A Chain A, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI
ALKALINE Phosphatase
Length = 458
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 34 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 93
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 94 TGKPDYVTD 102
>pdb|3BDH|A Chain A, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
pdb|3BDH|B Chain B, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
Length = 458
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 34 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 93
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 94 TGKPDYVTD 102
>pdb|3DYC|A Chain A, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
pdb|3DYC|B Chain B, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
Length = 449
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|1Y7A|A Chain A, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
pdb|1Y7A|B Chain B, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
Length = 449
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
KPG V+D+ + G T A+L+ + G++ A ++
Sbjct: 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDV 292
>pdb|2G9Y|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
pdb|2G9Y|B Chain B, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
Length = 449
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPNI 72
G P+ + +
Sbjct: 93 TGKPDYVTDT 102
>pdb|2ANH|A Chain A, Alkaline Phosphatase (D153h)
pdb|2ANH|B Chain B, Alkaline Phosphatase (D153h)
Length = 446
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 30 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 89
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 90 TGKPDYVTD 98
>pdb|1ED8|A Chain A, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED8|B Chain B, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|A Chain A, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|B Chain B, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1EW8|A Chain A, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW8|B Chain B, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW9|A Chain A, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1EW9|B Chain B, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1Y6V|A Chain A, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|1Y6V|B Chain B, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|3TG0|A Chain A, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|B Chain B, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|C Chain C, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|D Chain D, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
Length = 449
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|1ANI|A Chain A, Alkaline Phosphatase (D153h, K328h)
pdb|1ANI|B Chain B, Alkaline Phosphatase (D153h, K328h)
Length = 446
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 30 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 89
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 90 TGKPDYVTD 98
>pdb|1ELX|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102a)
pdb|1ELX|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102a)
Length = 449
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|1ELZ|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102g)
pdb|1ELZ|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102g)
Length = 449
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|1HQA|A Chain A, Alkaline Phosphatase (H412q)
pdb|1HQA|B Chain B, Alkaline Phosphatase (H412q)
Length = 449
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|1HJK|A Chain A, Alkaline Phosphatase Mutant H331q
pdb|1HJK|B Chain B, Alkaline Phosphatase Mutant H331q
Length = 449
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|1ALH|A Chain A, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
pdb|1ALH|B Chain B, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
Length = 446
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 30 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 89
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 90 TGKPDYVTD 98
>pdb|3CMR|A Chain A, E. Coli Alkaline Phosphatase Mutant R166s In Complex With
Phosphate
pdb|3CMR|B Chain B, E. Coli Alkaline Phosphatase Mutant R166s In Complex With
Phosphate
Length = 449
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|1AJD|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJD|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJC|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJC|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJB|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJB|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJA|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJA|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
Length = 449
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|1ANJ|A Chain A, Alkaline Phosphatase (K328h)
pdb|1ANJ|B Chain B, Alkaline Phosphatase (K328h)
Length = 446
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 30 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 89
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 90 TGKPDYVTD 98
>pdb|1ALJ|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALJ|B Chain B, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|B Chain B, Alkaline Phosphatase Mutant (H412n)
Length = 449
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|1ELY|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102c)
pdb|1ELY|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102c)
Length = 449
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|1B8J|A Chain A, Alkaline Phosphatase Complexed With Vanadate
pdb|1B8J|B Chain B, Alkaline Phosphatase Complexed With Vanadate
pdb|2GA3|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase-Phosphate
Intermediate At 2.20a Resolution
pdb|2GA3|B Chain B, Structure Of S102t E. Coli Alkaline Phosphatase-Phosphate
Intermediate At 2.20a Resolution
Length = 449
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 10 LKDNL--KPGAKV-LDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQ 62
L+D+L KP + L IG G G +TA G+ G ++ +P Q+THY N +
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 92
Query: 63 QGNPELLPN 71
G P+ + +
Sbjct: 93 TGKPDYVTD 101
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
+A+A+ +L D KPG +VLD+ + G T A +G G + A E+
Sbjct: 89 SAQAVGVLLDP-KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV 134
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
+A+A+ +L D KPG +VLD+ + G T A +G G + A E+
Sbjct: 89 SAQAVGVLLDP-KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV 134
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN--- 65
++ D++K GA + D+ G+ Y+ D VGS G PEV+ H +++G
Sbjct: 20 IVFDHVK-GAHIWDV-DGNQYI-----DYVGSWGPAIVGHAHPEVIDALHAALEKGTSFG 72
Query: 66 -PELLPNI 72
P LL NI
Sbjct: 73 APCLLENI 80
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
Length = 211
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 10 LKDNLKPGAKVLDIGSGSGYL 30
LK L PG +L++G+G+GY
Sbjct: 30 LKGLLPPGESLLEVGAGTGYW 50
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
A+AL L D +PG +VLD +GSG + A +G V A +L
Sbjct: 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDL 236
>pdb|3KR9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase
pdb|3KU1|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|E Chain E, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|F Chain F, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|G Chain G, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
pdb|3KU1|H Chain H, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex
With S- Adenosyl-L-Methionine
Length = 225
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYL 30
M ++ LEL+ + GA +LD+GS YL
Sbjct: 1 MISKRLELVASFVSQGAILLDVGSDHAYL 29
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGS 40
P K +DIG G YL DL+GS
Sbjct: 260 PNCKTVDIGPGLHYLQEDNPDLIGS 284
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGS 40
P K +DIG G YL DL+GS
Sbjct: 260 PNCKTVDIGPGLHYLQEDNPDLIGS 284
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGS 40
P K +DIG G YL DL+GS
Sbjct: 260 PNCKTVDIGPGLHYLQEDNPDLIGS 284
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGS 40
P K +DIG G YL DL+GS
Sbjct: 260 PNCKTVDIGPGLHYLQEDNPDLIGS 284
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGS 40
P K +DIG G YL DL+GS
Sbjct: 257 PNCKTVDIGPGLHYLQEDNPDLIGS 281
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGS 40
P K +DIG G YL DL+GS
Sbjct: 260 PNCKTVDIGPGLHYLQEDNPDLIGS 284
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGS 40
P K +DIG G YL DL+GS
Sbjct: 260 PNCKTVDIGPGLHYLQEDNPDLIGS 284
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGS 40
P K +DIG G YL DL+GS
Sbjct: 271 PNCKTVDIGPGLHYLQEDNPDLIGS 295
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGS 40
P K +DIG G YL DL+GS
Sbjct: 271 PNCKTVDIGPGLHYLQEDNPDLIGS 295
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
+A+A+ +L D KPG +VLD+ + G T A G G + A E+
Sbjct: 89 SAQAVGVLLDP-KPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEV 134
>pdb|1XVQ|A Chain A, Crystal Structure Of Thiol Peroxidase From Mycobacterium
Tuberculosis
Length = 175
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 37 LVGSNGEVTAVELIPEVLQFTHY 59
++G++G V EL+PE+ Q +Y
Sbjct: 134 VIGADGNVAYTELVPEIAQEPNY 156
>pdb|1KH7|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
pdb|1KH7|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
Length = 449
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 20 VLDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQQGNPELL 69
+L IG G G +TA G+ G ++ +P Q+THY N + G P+ +
Sbjct: 46 ILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYV 99
>pdb|1ALK|A Chain A, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
pdb|1ALK|B Chain B, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
Length = 449
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 20 VLDIGSGSG--YLTACFADLVGSNGEVTAVELIPEVLQFTHY--NIQQGNPELLPN 71
+L IG G G +TA G+ G ++ +P Q+THY N + G P+ + +
Sbjct: 46 ILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTD 101
>pdb|1X94|A Chain A, Crystal Structure Of A Hypothetical Protein
pdb|1X94|B Chain B, Crystal Structure Of A Hypothetical Protein
Length = 191
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTA 32
A +L+ D+ K G KVL G+G + A
Sbjct: 33 AAKLIADSFKQGGKVLSCGNGGSHCDA 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,932,646
Number of Sequences: 62578
Number of extensions: 111975
Number of successful extensions: 400
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 112
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)