Query psy8023
Match_columns 88
No_of_seqs 127 out of 1898
Neff 10.2
Searched_HMMs 46136
Date Sat Aug 17 00:50:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12847 Methyltransf_18: Meth 99.7 5.5E-16 1.2E-20 83.5 9.1 61 16-81 1-61 (112)
2 PF13847 Methyltransf_31: Meth 99.7 7.9E-16 1.7E-20 87.2 9.2 66 15-86 2-67 (152)
3 TIGR00080 pimt protein-L-isoas 99.6 5.1E-15 1.1E-19 88.1 10.0 76 3-85 66-141 (215)
4 PRK13944 protein-L-isoaspartat 99.6 7E-15 1.5E-19 87.0 9.9 76 5-86 63-138 (205)
5 PRK13942 protein-L-isoaspartat 99.6 8.4E-15 1.8E-19 87.1 9.8 76 3-85 65-140 (212)
6 PF01135 PCMT: Protein-L-isoas 99.6 7.9E-15 1.7E-19 87.1 9.0 78 2-86 60-137 (209)
7 PF01209 Ubie_methyltran: ubiE 99.6 6.1E-15 1.3E-19 88.8 8.2 65 14-83 45-109 (233)
8 COG2226 UbiE Methylase involve 99.6 1.2E-14 2.6E-19 87.5 9.1 63 15-83 50-112 (238)
9 PRK15451 tRNA cmo(5)U34 methyl 99.6 4.3E-14 9.3E-19 85.7 9.9 70 10-83 50-120 (247)
10 PRK00107 gidB 16S rRNA methylt 99.6 2.8E-14 6E-19 83.5 8.5 65 13-83 42-106 (187)
11 TIGR02752 MenG_heptapren 2-hep 99.5 8.6E-14 1.9E-18 83.4 9.3 65 14-83 43-107 (231)
12 PF05175 MTS: Methyltransferas 99.5 1.5E-13 3.3E-18 79.3 10.0 73 6-86 23-95 (170)
13 COG2518 Pcm Protein-L-isoaspar 99.5 8.6E-14 1.9E-18 82.1 9.0 75 2-86 60-134 (209)
14 TIGR00740 methyltransferase, p 99.5 1.9E-13 4.2E-18 82.4 10.0 66 14-83 51-117 (239)
15 TIGR02469 CbiT precorrin-6Y C5 99.5 2.3E-13 4.9E-18 74.2 9.3 64 14-83 17-80 (124)
16 PRK08287 cobalt-precorrin-6Y C 99.5 2E-13 4.4E-18 79.7 9.4 64 14-83 29-92 (187)
17 TIGR00138 gidB 16S rRNA methyl 99.5 9.1E-14 2E-18 81.0 7.5 62 16-83 42-103 (181)
18 COG2242 CobL Precorrin-6B meth 99.5 2.8E-13 6.1E-18 78.6 9.3 66 14-85 32-97 (187)
19 PRK07402 precorrin-6B methylas 99.5 2E-13 4.2E-18 80.3 8.9 64 14-83 38-101 (196)
20 PRK00377 cbiT cobalt-precorrin 99.5 2.9E-13 6.2E-18 79.8 9.4 67 14-84 38-104 (198)
21 PF06325 PrmA: Ribosomal prote 99.5 2.5E-13 5.3E-18 84.2 8.7 61 3-65 148-208 (295)
22 PRK13943 protein-L-isoaspartat 99.5 4.3E-13 9.3E-18 84.1 9.6 66 14-84 78-143 (322)
23 COG2230 Cfa Cyclopropane fatty 99.5 4E-13 8.6E-18 82.5 8.9 64 14-83 70-133 (283)
24 PLN02233 ubiquinone biosynthes 99.5 6.2E-13 1.3E-17 81.3 9.6 68 14-83 71-138 (261)
25 TIGR03533 L3_gln_methyl protei 99.5 4.4E-13 9.6E-18 82.8 9.0 65 16-85 121-185 (284)
26 PRK00121 trmB tRNA (guanine-N( 99.5 3.2E-13 7E-18 79.8 7.8 62 15-82 39-100 (202)
27 TIGR03438 probable methyltrans 99.5 5.2E-13 1.1E-17 83.1 9.1 77 5-85 52-128 (301)
28 PLN02244 tocopherol O-methyltr 99.5 6.2E-13 1.3E-17 83.9 9.4 63 15-83 117-179 (340)
29 PRK14966 unknown domain/N5-glu 99.5 7.2E-13 1.6E-17 85.2 9.5 73 4-83 239-311 (423)
30 COG4123 Predicted O-methyltran 99.5 2.7E-13 5.7E-18 82.0 7.1 67 14-85 42-108 (248)
31 COG2890 HemK Methylase of poly 99.5 5.9E-13 1.3E-17 82.1 8.5 61 19-85 113-173 (280)
32 PF13649 Methyltransf_25: Meth 99.5 5.8E-13 1.3E-17 70.8 7.2 58 20-83 1-60 (101)
33 COG2264 PrmA Ribosomal protein 99.5 4.5E-13 9.9E-18 82.8 7.6 63 3-67 149-211 (300)
34 PLN02781 Probable caffeoyl-CoA 99.5 1E-12 2.2E-17 79.3 8.8 75 6-85 59-133 (234)
35 PF02353 CMAS: Mycolic acid cy 99.4 9E-13 2E-17 81.1 8.3 64 14-83 60-123 (273)
36 TIGR00536 hemK_fam HemK family 99.4 1.6E-12 3.4E-17 80.3 9.3 63 18-85 116-178 (284)
37 PRK11036 putative S-adenosyl-L 99.4 1.2E-12 2.5E-17 79.7 8.6 62 15-83 43-104 (255)
38 TIGR00091 tRNA (guanine-N(7)-) 99.4 6.8E-13 1.5E-17 78.0 7.2 63 15-83 15-77 (194)
39 TIGR02021 BchM-ChlM magnesium 99.4 2E-12 4.3E-17 77.1 9.1 62 15-83 54-115 (219)
40 PRK15001 SAM-dependent 23S rib 99.4 1.9E-12 4.1E-17 82.6 9.3 66 17-85 229-294 (378)
41 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.3E-12 2.8E-17 84.9 8.4 63 14-84 295-357 (443)
42 PRK11805 N5-glutamine S-adenos 99.4 1.3E-12 2.9E-17 81.5 7.8 63 18-85 135-197 (307)
43 PRK00312 pcm protein-L-isoaspa 99.4 3.4E-12 7.4E-17 75.8 9.2 64 14-85 76-139 (212)
44 PRK11207 tellurite resistance 99.4 2.6E-12 5.6E-17 75.7 8.5 68 6-83 22-89 (197)
45 PF01596 Methyltransf_3: O-met 99.4 2E-12 4.3E-17 76.7 7.3 76 5-85 35-110 (205)
46 PF13659 Methyltransf_26: Meth 99.4 2.5E-12 5.4E-17 69.7 7.0 62 17-84 1-62 (117)
47 TIGR03587 Pse_Me-ase pseudamin 99.4 4.5E-12 9.9E-17 75.1 8.6 48 13-61 40-87 (204)
48 PRK00517 prmA ribosomal protei 99.4 4.9E-12 1.1E-16 76.9 8.7 71 4-80 107-177 (250)
49 TIGR03534 RF_mod_PrmC protein- 99.4 7.5E-12 1.6E-16 75.6 9.5 64 16-85 87-150 (251)
50 PRK01544 bifunctional N5-gluta 99.4 4.4E-12 9.5E-17 83.6 9.0 63 17-84 139-201 (506)
51 PRK03522 rumB 23S rRNA methylu 99.4 3.6E-12 7.8E-17 79.8 8.1 61 16-84 173-233 (315)
52 TIGR00406 prmA ribosomal prote 99.4 7.4E-12 1.6E-16 77.5 9.4 71 4-80 147-217 (288)
53 COG2263 Predicted RNA methylas 99.4 3.4E-12 7.3E-17 74.2 7.2 61 16-84 45-105 (198)
54 PF08704 GCD14: tRNA methyltra 99.4 1.5E-11 3.1E-16 74.7 10.1 68 14-85 38-106 (247)
55 PRK11873 arsM arsenite S-adeno 99.4 6.1E-12 1.3E-16 77.1 8.5 65 14-83 75-139 (272)
56 PLN02476 O-methyltransferase 99.4 8.6E-12 1.9E-16 76.8 9.1 76 5-85 108-183 (278)
57 TIGR00479 rumA 23S rRNA (uraci 99.4 3.9E-12 8.5E-17 82.4 7.9 63 14-84 290-352 (431)
58 smart00650 rADc Ribosomal RNA 99.4 7.7E-12 1.7E-16 72.0 8.3 68 4-83 3-70 (169)
59 COG2265 TrmA SAM-dependent met 99.4 3.7E-12 8E-17 82.5 7.1 73 3-85 282-354 (432)
60 PRK00050 16S rRNA m(4)C1402 me 99.3 1.3E-11 2.9E-16 76.6 8.6 74 1-83 6-79 (296)
61 TIGR02143 trmA_only tRNA (urac 99.3 8E-12 1.7E-16 79.3 7.8 73 5-85 185-258 (353)
62 TIGR03704 PrmC_rel_meth putati 99.3 1.4E-11 3E-16 75.1 8.5 59 17-84 87-145 (251)
63 PRK10909 rsmD 16S rRNA m(2)G96 99.3 1.4E-11 3E-16 72.8 8.1 64 15-85 52-115 (199)
64 PRK04266 fibrillarin; Provisio 99.3 2.5E-11 5.5E-16 72.9 9.4 62 14-83 70-131 (226)
65 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.2E-11 4.8E-16 74.6 9.3 65 14-83 69-133 (264)
66 PTZ00338 dimethyladenosine tra 99.3 1.3E-11 2.8E-16 76.7 8.4 63 14-83 34-96 (294)
67 PRK01683 trans-aconitate 2-met 99.3 1.3E-11 2.8E-16 75.1 8.0 46 15-61 30-75 (258)
68 TIGR00477 tehB tellurite resis 99.3 1.9E-11 4E-16 72.0 8.4 56 5-65 21-76 (195)
69 PRK04457 spermidine synthase; 99.3 1.9E-11 4.1E-16 74.9 8.6 66 14-84 64-129 (262)
70 PRK14121 tRNA (guanine-N(7)-)- 99.3 2E-11 4.2E-16 78.1 8.8 63 15-83 121-183 (390)
71 COG2813 RsmC 16S RNA G1207 met 99.3 2.2E-11 4.7E-16 75.3 8.5 62 16-83 158-219 (300)
72 PRK14902 16S rRNA methyltransf 99.3 3E-11 6.6E-16 78.6 9.6 65 14-83 248-312 (444)
73 PRK05031 tRNA (uracil-5-)-meth 99.3 1.3E-11 2.9E-16 78.5 7.7 74 4-85 193-267 (362)
74 PRK00274 ksgA 16S ribosomal RN 99.3 2E-11 4.4E-16 75.1 8.2 59 14-83 40-98 (272)
75 PRK14103 trans-aconitate 2-met 99.3 2E-11 4.3E-16 74.3 8.0 44 15-59 28-71 (255)
76 PRK09328 N5-glutamine S-adenos 99.3 3.4E-11 7.3E-16 73.8 9.0 64 15-84 107-170 (275)
77 TIGR02716 C20_methyl_CrtF C-20 99.3 3.6E-11 7.9E-16 74.9 9.2 64 14-83 147-210 (306)
78 PLN02585 magnesium protoporphy 99.3 4.9E-11 1.1E-15 74.7 9.7 64 16-82 144-207 (315)
79 PF02475 Met_10: Met-10+ like- 99.3 3.2E-11 6.9E-16 71.3 8.3 72 9-85 94-165 (200)
80 KOG2904|consensus 99.3 2.9E-11 6.2E-16 74.0 8.2 59 16-79 148-206 (328)
81 COG2519 GCD14 tRNA(1-methylade 99.3 4E-11 8.7E-16 72.5 8.7 68 14-85 92-159 (256)
82 PRK14904 16S rRNA methyltransf 99.3 5.9E-11 1.3E-15 77.3 10.1 65 14-83 248-312 (445)
83 PTZ00098 phosphoethanolamine N 99.3 3.6E-11 7.8E-16 73.7 8.6 61 14-83 50-110 (263)
84 PLN02396 hexaprenyldihydroxybe 99.3 1.8E-11 4E-16 76.8 7.4 61 16-83 131-191 (322)
85 PRK14901 16S rRNA methyltransf 99.3 4.3E-11 9.3E-16 77.7 9.2 65 14-83 250-314 (434)
86 PRK12335 tellurite resistance 99.3 4.3E-11 9.2E-16 74.1 8.7 59 16-83 120-178 (287)
87 PF03848 TehB: Tellurite resis 99.3 5.9E-11 1.3E-15 69.7 8.7 70 3-83 19-88 (192)
88 KOG1540|consensus 99.3 7.3E-11 1.6E-15 71.6 9.2 79 3-83 85-170 (296)
89 smart00828 PKS_MT Methyltransf 99.3 4.2E-11 9.2E-16 71.5 8.2 61 18-83 1-61 (224)
90 PRK08317 hypothetical protein; 99.3 8.3E-11 1.8E-15 70.3 9.5 64 14-83 17-80 (241)
91 PRK00216 ubiE ubiquinone/menaq 99.3 8.5E-11 1.9E-15 70.4 9.5 65 15-83 50-114 (239)
92 TIGR02085 meth_trns_rumB 23S r 99.3 3E-11 6.4E-16 77.2 7.9 61 16-84 233-293 (374)
93 PF07021 MetW: Methionine bios 99.3 3.1E-11 6.8E-16 70.5 7.2 65 8-86 5-69 (193)
94 PRK14903 16S rRNA methyltransf 99.3 8E-11 1.7E-15 76.5 9.8 65 14-83 235-299 (431)
95 KOG2187|consensus 99.3 5.5E-12 1.2E-16 82.1 4.4 73 3-85 372-444 (534)
96 PRK14968 putative methyltransf 99.3 9.5E-11 2.1E-15 68.0 9.3 63 15-84 22-85 (188)
97 KOG1271|consensus 99.3 3E-11 6.4E-16 70.2 6.9 61 19-84 70-130 (227)
98 PRK07580 Mg-protoporphyrin IX 99.3 8.7E-11 1.9E-15 70.2 9.0 60 15-81 62-121 (230)
99 PF05958 tRNA_U5-meth_tr: tRNA 99.3 1.4E-11 3.1E-16 78.2 5.9 71 5-83 184-255 (352)
100 PLN02336 phosphoethanolamine N 99.3 6.2E-11 1.4E-15 77.6 9.0 62 14-83 264-325 (475)
101 PRK14896 ksgA 16S ribosomal RN 99.3 5.3E-11 1.1E-15 72.7 8.1 60 14-83 27-86 (258)
102 TIGR00095 RNA methyltransferas 99.3 5.9E-11 1.3E-15 69.7 8.0 64 15-84 48-111 (189)
103 COG4106 Tam Trans-aconitate me 99.3 2.7E-11 6E-16 71.9 6.5 61 15-86 29-89 (257)
104 PRK09489 rsmC 16S ribosomal RN 99.3 9.2E-11 2E-15 74.2 9.2 60 17-83 197-256 (342)
105 TIGR00537 hemK_rel_arch HemK-r 99.3 1.2E-10 2.5E-15 67.7 8.9 60 15-83 18-77 (179)
106 PLN02672 methionine S-methyltr 99.2 3.5E-11 7.6E-16 84.5 7.6 68 17-85 119-197 (1082)
107 PLN02589 caffeoyl-CoA O-methyl 99.2 9E-11 1.9E-15 71.4 8.3 76 5-85 69-144 (247)
108 PF09445 Methyltransf_15: RNA 99.2 2.9E-11 6.2E-16 69.3 5.8 59 19-84 2-60 (163)
109 PRK05785 hypothetical protein; 99.2 6.9E-11 1.5E-15 71.0 7.6 52 7-60 42-93 (226)
110 PRK15128 23S rRNA m(5)C1962 me 99.2 1.1E-10 2.4E-15 75.1 8.6 65 14-84 218-283 (396)
111 PLN03075 nicotianamine synthas 99.2 2.1E-10 4.6E-15 71.2 9.4 65 16-84 123-189 (296)
112 PRK14967 putative methyltransf 99.2 9.8E-11 2.1E-15 70.1 7.8 62 14-83 34-95 (223)
113 COG4122 Predicted O-methyltran 99.2 2E-10 4.4E-15 68.6 8.9 75 5-84 49-124 (219)
114 KOG1270|consensus 99.2 3.7E-11 7.9E-16 73.0 5.7 64 17-83 90-154 (282)
115 TIGR00755 ksgA dimethyladenosi 99.2 1.4E-10 3E-15 70.7 8.3 60 14-83 27-86 (253)
116 PRK11705 cyclopropane fatty ac 99.2 2.2E-10 4.7E-15 73.5 8.7 47 14-62 165-211 (383)
117 COG2227 UbiG 2-polyprenyl-3-me 99.2 3.8E-11 8.1E-16 72.1 4.9 47 16-65 59-105 (243)
118 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.5E-10 3.2E-15 79.0 8.4 65 15-85 537-602 (702)
119 TIGR01177 conserved hypothetic 99.2 2.1E-10 4.6E-15 72.2 8.3 62 14-83 180-241 (329)
120 PF08241 Methyltransf_11: Meth 99.2 2.8E-10 6.1E-15 59.0 7.5 53 21-83 1-53 (95)
121 PRK06202 hypothetical protein; 99.2 1.3E-10 2.9E-15 69.8 7.0 49 15-63 59-110 (232)
122 PTZ00146 fibrillarin; Provisio 99.2 2.3E-10 4.9E-15 70.9 8.1 63 14-83 130-192 (293)
123 PRK10901 16S rRNA methyltransf 99.2 3.5E-10 7.7E-15 73.4 9.4 63 14-83 242-304 (427)
124 PRK06922 hypothetical protein; 99.2 1.6E-10 3.4E-15 77.8 7.9 62 15-83 417-478 (677)
125 PRK11727 23S rRNA mA1618 methy 99.2 2.7E-10 5.7E-15 71.6 8.0 58 16-78 114-172 (321)
126 TIGR03840 TMPT_Se_Te thiopurin 99.2 3.3E-10 7.1E-15 67.6 8.1 66 15-83 33-105 (213)
127 PF02390 Methyltransf_4: Putat 99.2 3.1E-10 6.7E-15 66.9 7.6 64 16-85 17-80 (195)
128 PRK00811 spermidine synthase; 99.2 3.5E-10 7.6E-15 70.0 8.1 69 15-84 75-143 (283)
129 KOG1661|consensus 99.2 2E-10 4.4E-15 67.9 6.6 85 2-86 68-158 (237)
130 TIGR00563 rsmB ribosomal RNA s 99.1 6.2E-10 1.4E-14 72.2 9.3 64 14-82 236-299 (426)
131 PF08242 Methyltransf_12: Meth 99.1 4.6E-12 9.9E-17 67.0 -0.6 44 21-65 1-44 (99)
132 PRK15068 tRNA mo(5)U34 methylt 99.1 6.8E-10 1.5E-14 69.8 9.0 63 15-83 121-183 (322)
133 PRK11088 rrmA 23S rRNA methylt 99.1 5.7E-10 1.2E-14 68.6 8.3 45 16-60 85-131 (272)
134 KOG1541|consensus 99.1 2.6E-10 5.6E-15 68.0 6.4 73 2-87 36-108 (270)
135 TIGR02072 BioC biotin biosynth 99.1 7.6E-10 1.6E-14 66.2 8.2 57 16-82 34-90 (240)
136 PRK10258 biotin biosynthesis p 99.1 5.7E-10 1.2E-14 67.7 7.7 44 16-62 42-85 (251)
137 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 1.1E-09 2.4E-14 65.0 8.7 62 15-83 38-99 (223)
138 COG2520 Predicted methyltransf 99.1 3.9E-10 8.5E-15 71.1 7.1 68 13-86 185-252 (341)
139 PHA03411 putative methyltransf 99.1 1.4E-09 3E-14 67.0 8.3 57 16-83 64-120 (279)
140 PLN02490 MPBQ/MSBQ methyltrans 99.1 7.2E-10 1.6E-14 70.1 7.3 60 15-83 112-171 (340)
141 COG0030 KsgA Dimethyladenosine 99.1 1.2E-09 2.6E-14 66.7 7.8 60 14-83 28-87 (259)
142 PRK13255 thiopurine S-methyltr 99.1 9.9E-10 2.1E-14 65.8 7.4 68 14-84 35-109 (218)
143 TIGR00452 methyltransferase, p 99.1 1.3E-09 2.9E-14 68.3 8.1 43 15-59 120-162 (314)
144 TIGR02081 metW methionine bios 99.1 1.3E-09 2.7E-14 64.1 7.4 49 9-59 6-54 (194)
145 PRK11188 rrmJ 23S rRNA methylt 99.1 7.9E-10 1.7E-14 65.8 6.6 38 14-51 49-86 (209)
146 KOG1499|consensus 99.0 1.4E-09 2.9E-14 68.4 6.9 62 15-83 59-120 (346)
147 PRK01581 speE spermidine synth 99.0 2.3E-09 4.9E-14 68.3 8.0 82 3-85 137-220 (374)
148 KOG3191|consensus 99.0 2.2E-09 4.7E-14 62.4 7.0 63 17-85 44-106 (209)
149 PF01170 UPF0020: Putative RNA 99.0 5E-09 1.1E-13 61.1 8.7 66 14-83 26-99 (179)
150 COG1092 Predicted SAM-dependen 99.0 1.9E-09 4.1E-14 69.2 7.4 71 9-85 211-281 (393)
151 PF05401 NodS: Nodulation prot 99.0 1.3E-09 2.8E-14 64.0 5.7 60 17-86 44-103 (201)
152 PHA03412 putative methyltransf 99.0 3.5E-09 7.6E-14 64.0 7.5 46 16-61 49-96 (241)
153 TIGR01444 fkbM_fam methyltrans 99.0 4E-09 8.6E-14 59.0 7.2 57 19-81 1-57 (143)
154 KOG2915|consensus 99.0 8.5E-09 1.8E-13 63.2 8.7 73 5-83 96-168 (314)
155 smart00138 MeTrc Methyltransfe 99.0 3.1E-09 6.7E-14 65.3 6.9 46 16-61 99-152 (264)
156 TIGR00438 rrmJ cell division p 99.0 2.3E-09 4.9E-14 62.7 5.9 40 14-53 30-69 (188)
157 COG0220 Predicted S-adenosylme 99.0 3.3E-09 7.2E-14 63.8 6.4 62 18-85 50-111 (227)
158 PLN02366 spermidine synthase 99.0 1.3E-08 2.8E-13 63.8 9.3 67 15-83 90-156 (308)
159 PF03602 Cons_hypoth95: Conser 99.0 3.9E-09 8.4E-14 61.7 6.5 75 5-85 31-105 (183)
160 PRK03612 spermidine synthase; 98.9 9.5E-09 2.1E-13 68.3 8.8 69 15-84 296-366 (521)
161 PF04816 DUF633: Family of unk 98.9 8.6E-09 1.9E-13 61.3 7.7 62 20-86 1-62 (205)
162 KOG3420|consensus 98.9 9E-10 1.9E-14 62.0 3.2 71 6-84 36-108 (185)
163 PLN02336 phosphoethanolamine N 98.9 7.4E-09 1.6E-13 67.9 7.9 58 16-83 37-94 (475)
164 cd02440 AdoMet_MTases S-adenos 98.9 9.5E-09 2.1E-13 53.3 6.9 59 19-84 1-59 (107)
165 KOG0820|consensus 98.9 1.2E-08 2.7E-13 62.5 8.1 63 14-83 56-118 (315)
166 PRK04338 N(2),N(2)-dimethylgua 98.9 5.9E-09 1.3E-13 67.0 6.9 61 17-83 58-118 (382)
167 TIGR01983 UbiG ubiquinone bios 98.9 1.2E-08 2.6E-13 60.9 7.7 60 16-83 45-104 (224)
168 PF13489 Methyltransf_23: Meth 98.9 1.5E-08 3.2E-13 57.3 7.7 49 5-56 11-59 (161)
169 TIGR00006 S-adenosyl-methyltra 98.9 2.3E-08 5.1E-13 62.5 8.9 73 1-82 7-79 (305)
170 PF03291 Pox_MCEL: mRNA cappin 98.9 9.7E-09 2.1E-13 64.9 6.9 66 16-83 62-132 (331)
171 PF05185 PRMT5: PRMT5 arginine 98.9 4E-08 8.7E-13 64.3 9.0 64 17-84 187-253 (448)
172 PF00398 RrnaAD: Ribosomal RNA 98.8 2.9E-08 6.2E-13 60.9 7.8 61 14-84 28-88 (262)
173 TIGR00417 speE spermidine synt 98.8 4.3E-08 9.4E-13 60.4 8.6 67 15-83 71-137 (270)
174 COG4976 Predicted methyltransf 98.8 3.4E-09 7.5E-14 63.7 3.4 40 18-60 127-166 (287)
175 PF10672 Methyltrans_SAM: S-ad 98.8 3.5E-08 7.5E-13 61.3 7.7 66 15-85 122-187 (286)
176 PF13679 Methyltransf_32: Meth 98.8 3.6E-08 7.8E-13 55.4 6.9 65 15-81 24-91 (141)
177 PRK13256 thiopurine S-methyltr 98.8 5.5E-08 1.2E-12 58.6 7.8 67 15-84 42-115 (226)
178 KOG2730|consensus 98.8 1.6E-08 3.4E-13 60.5 5.2 61 16-83 94-154 (263)
179 PF10294 Methyltransf_16: Puta 98.8 3.1E-08 6.8E-13 57.4 6.4 50 14-65 43-92 (173)
180 PRK05134 bifunctional 3-demeth 98.8 6.8E-08 1.5E-12 58.0 8.1 59 15-82 47-105 (233)
181 COG2384 Predicted SAM-dependen 98.8 5E-08 1.1E-12 58.2 7.1 77 4-85 4-80 (226)
182 PRK11933 yebU rRNA (cytosine-C 98.8 1.5E-07 3.2E-12 62.0 9.8 65 14-83 111-175 (470)
183 KOG1500|consensus 98.8 4.2E-08 9E-13 62.2 6.8 61 16-83 177-237 (517)
184 PRK04148 hypothetical protein; 98.7 9.8E-08 2.1E-12 53.2 6.9 42 16-60 16-58 (134)
185 PLN02823 spermine synthase 98.7 1.5E-07 3.2E-12 59.7 8.3 69 15-85 102-170 (336)
186 KOG1663|consensus 98.7 1.5E-07 3.3E-12 56.5 7.8 67 15-85 72-138 (237)
187 COG0742 N6-adenine-specific me 98.7 1.9E-07 4.1E-12 54.7 7.5 72 6-83 33-104 (187)
188 KOG3010|consensus 98.7 5.7E-08 1.2E-12 58.7 5.3 42 19-63 36-77 (261)
189 PF00891 Methyltransf_2: O-met 98.7 1.9E-07 4.2E-12 56.5 7.7 60 14-86 98-157 (241)
190 KOG2899|consensus 98.7 9.5E-08 2.1E-12 58.0 6.2 50 15-65 57-106 (288)
191 PF05724 TPMT: Thiopurine S-me 98.7 2.7E-07 5.8E-12 55.4 7.9 67 14-83 35-108 (218)
192 TIGR00478 tly hemolysin TlyA f 98.7 9.8E-08 2.1E-12 57.6 5.9 40 15-56 74-113 (228)
193 KOG1975|consensus 98.7 4.3E-08 9.3E-13 61.5 4.4 68 14-83 115-183 (389)
194 COG1041 Predicted DNA modifica 98.6 1.7E-07 3.7E-12 59.3 6.7 62 14-83 195-257 (347)
195 TIGR00308 TRM1 tRNA(guanine-26 98.6 1.4E-07 3.1E-12 60.6 6.5 62 18-84 46-107 (374)
196 PF05971 Methyltransf_10: Prot 98.6 3.9E-07 8.4E-12 56.9 8.0 59 17-80 103-162 (299)
197 PF02527 GidB: rRNA small subu 98.6 4.4E-07 9.6E-12 53.2 7.8 59 19-83 51-109 (184)
198 PRK11783 rlmL 23S rRNA m(2)G24 98.6 6.8E-07 1.5E-11 61.5 9.2 65 15-83 189-294 (702)
199 PRK01544 bifunctional N5-gluta 98.6 3E-07 6.5E-12 61.1 7.3 61 16-82 347-407 (506)
200 PF08123 DOT1: Histone methyla 98.6 5.3E-07 1.1E-11 53.7 7.3 76 5-83 33-112 (205)
201 COG4076 Predicted RNA methylas 98.6 2.2E-07 4.8E-12 54.6 5.5 58 18-83 34-91 (252)
202 PF01795 Methyltransf_5: MraW 98.6 6.9E-07 1.5E-11 56.1 7.8 73 1-82 7-79 (310)
203 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.6 1.6E-06 3.6E-11 53.9 9.3 66 14-84 83-148 (283)
204 KOG4300|consensus 98.5 3.2E-07 6.8E-12 54.6 5.1 58 19-83 79-137 (252)
205 COG0275 Predicted S-adenosylme 98.5 2.2E-06 4.8E-11 53.5 8.7 73 1-81 10-82 (314)
206 PF08003 Methyltransf_9: Prote 98.5 1.9E-06 4.1E-11 53.9 8.1 39 16-56 115-153 (315)
207 TIGR03439 methyl_EasF probable 98.5 2.2E-06 4.8E-11 54.1 8.4 77 5-84 65-144 (319)
208 COG0357 GidB Predicted S-adeno 98.4 1.3E-06 2.8E-11 52.3 6.6 61 17-83 68-128 (215)
209 PF07091 FmrO: Ribosomal RNA m 98.4 1.6E-06 3.4E-11 52.8 7.0 74 4-84 93-166 (251)
210 COG3963 Phospholipid N-methylt 98.4 1.1E-06 2.3E-11 50.8 5.7 57 6-62 36-94 (194)
211 COG0421 SpeE Spermidine syntha 98.4 2.1E-06 4.6E-11 53.3 7.5 66 18-85 78-143 (282)
212 PF01564 Spermine_synth: Sperm 98.4 1.6E-06 3.5E-11 52.9 6.8 69 14-84 74-142 (246)
213 PF02384 N6_Mtase: N-6 DNA Met 98.4 2E-06 4.3E-11 53.8 7.0 66 14-82 44-115 (311)
214 PF12147 Methyltransf_20: Puta 98.4 1.1E-05 2.3E-10 50.3 9.7 65 16-84 135-200 (311)
215 TIGR02987 met_A_Alw26 type II 98.3 3.7E-06 7.9E-11 56.2 7.4 50 16-65 31-87 (524)
216 COG0144 Sun tRNA and rRNA cyto 98.3 1.4E-05 3.1E-10 51.2 9.2 64 14-82 154-218 (355)
217 COG0116 Predicted N6-adenine-s 98.3 7.5E-06 1.6E-10 52.6 7.8 66 14-83 189-292 (381)
218 PF09243 Rsm22: Mitochondrial 98.3 8.2E-06 1.8E-10 50.6 7.6 60 6-65 21-82 (274)
219 KOG3115|consensus 98.3 3.7E-06 8.1E-11 50.0 5.5 69 17-86 61-131 (249)
220 KOG2361|consensus 98.2 9.1E-07 2E-11 53.6 2.8 44 19-63 74-119 (264)
221 PF01269 Fibrillarin: Fibrilla 98.2 2.9E-05 6.3E-10 46.8 8.7 49 14-62 71-119 (229)
222 PRK10742 putative methyltransf 98.2 1.6E-05 3.4E-10 48.6 7.6 69 14-85 84-158 (250)
223 PRK11524 putative methyltransf 98.2 1.2E-05 2.6E-10 50.0 7.0 55 6-63 197-252 (284)
224 PF06080 DUF938: Protein of un 98.2 1.2E-05 2.6E-10 47.8 6.4 59 6-65 14-73 (204)
225 COG0293 FtsJ 23S rRNA methylas 98.1 2.5E-05 5.4E-10 46.5 6.7 38 14-51 43-80 (205)
226 PF01555 N6_N4_Mtase: DNA meth 98.1 3.1E-05 6.7E-10 45.9 7.1 43 14-59 189-231 (231)
227 PF11599 AviRa: RRNA methyltra 98.0 6.1E-05 1.3E-09 45.3 7.0 61 4-64 37-100 (246)
228 PRK00536 speE spermidine synth 98.0 8.6E-05 1.9E-09 45.9 7.8 48 15-65 71-118 (262)
229 PRK13699 putative methylase; P 97.9 0.00011 2.3E-09 44.5 7.6 49 14-65 161-209 (227)
230 PF04672 Methyltransf_19: S-ad 97.9 0.0001 2.2E-09 45.6 7.4 61 18-83 70-132 (267)
231 PF03059 NAS: Nicotianamine sy 97.9 5.8E-05 1.3E-09 46.9 6.4 63 17-83 121-185 (276)
232 PF01728 FtsJ: FtsJ-like methy 97.9 1.2E-05 2.7E-10 46.6 3.2 37 16-52 23-59 (181)
233 COG3897 Predicted methyltransf 97.9 1.4E-05 3.1E-10 47.2 3.4 59 16-82 79-137 (218)
234 KOG1501|consensus 97.9 5.5E-05 1.2E-09 49.8 6.1 59 19-83 69-127 (636)
235 PF05219 DREV: DREV methyltran 97.9 4.5E-05 9.7E-10 46.9 5.1 42 16-60 94-135 (265)
236 KOG1227|consensus 97.9 6.7E-06 1.4E-10 51.4 1.5 63 15-83 193-256 (351)
237 PRK11760 putative 23S rRNA C24 97.9 7.6E-05 1.6E-09 47.7 6.1 34 15-51 210-243 (357)
238 KOG2078|consensus 97.8 1.9E-05 4.1E-10 51.5 3.3 69 11-85 244-312 (495)
239 PHA01634 hypothetical protein 97.8 0.0001 2.2E-09 41.1 5.4 48 16-65 28-75 (156)
240 PF13578 Methyltransf_24: Meth 97.8 9.6E-06 2.1E-10 43.2 1.3 60 21-85 1-62 (106)
241 COG1889 NOP1 Fibrillarin-like 97.8 0.00019 4.2E-09 42.8 6.4 48 14-62 74-121 (231)
242 KOG1122|consensus 97.7 0.00018 3.8E-09 47.0 6.5 64 14-82 239-302 (460)
243 COG4262 Predicted spermidine s 97.7 0.00012 2.6E-09 47.3 5.6 70 15-85 288-359 (508)
244 COG2521 Predicted archaeal met 97.7 2.7E-05 5.8E-10 47.4 2.2 64 15-83 133-196 (287)
245 KOG4589|consensus 97.6 0.00019 4.1E-09 42.5 4.6 37 14-50 67-103 (232)
246 COG0500 SmtA SAM-dependent met 97.5 0.0012 2.6E-08 35.9 7.3 58 20-83 52-109 (257)
247 PF02005 TRM: N2,N2-dimethylgu 97.5 0.00089 1.9E-08 43.4 7.3 64 16-83 49-113 (377)
248 PF01739 CheR: CheR methyltran 97.5 0.00035 7.7E-09 41.5 5.0 46 16-61 31-84 (196)
249 PF04445 SAM_MT: Putative SAM- 97.5 0.0014 3E-08 40.0 7.4 65 18-85 77-145 (234)
250 PF05891 Methyltransf_PK: AdoM 97.4 0.00052 1.1E-08 41.3 5.0 63 17-86 56-118 (218)
251 COG1352 CheR Methylase of chem 97.3 0.0019 4.2E-08 40.1 6.9 46 17-62 97-150 (268)
252 COG1189 Predicted rRNA methyla 97.3 0.00048 1E-08 42.0 4.1 38 15-54 78-115 (245)
253 PF04989 CmcI: Cephalosporin h 97.3 0.00093 2E-08 40.0 4.9 62 16-83 32-96 (206)
254 PF02636 Methyltransf_28: Puta 97.3 0.0011 2.3E-08 40.7 5.3 60 4-63 4-72 (252)
255 PRK10611 chemotaxis methyltran 97.2 0.0012 2.6E-08 41.4 5.0 45 17-61 116-167 (287)
256 COG1867 TRM1 N2,N2-dimethylgua 97.2 0.0019 4.2E-08 41.7 5.9 48 17-65 53-100 (380)
257 KOG4058|consensus 97.0 0.0017 3.6E-08 37.3 4.1 61 15-81 71-131 (199)
258 PF07757 AdoMet_MTase: Predict 96.8 0.0032 6.9E-08 34.0 3.9 33 16-51 58-90 (112)
259 KOG2651|consensus 96.8 0.011 2.5E-07 38.6 6.9 43 16-60 153-195 (476)
260 PF05050 Methyltransf_21: Meth 96.8 0.0096 2.1E-07 33.6 6.1 43 22-64 1-48 (167)
261 PF01861 DUF43: Protein of unk 96.8 0.037 8E-07 34.0 8.6 64 15-86 43-106 (243)
262 KOG3987|consensus 96.7 0.00025 5.4E-09 42.7 -0.7 42 16-60 112-153 (288)
263 COG0286 HsdM Type I restrictio 96.7 0.01 2.2E-07 39.9 6.5 50 16-65 186-238 (489)
264 KOG1596|consensus 96.7 0.0036 7.8E-08 38.6 3.9 48 13-60 153-204 (317)
265 cd00315 Cyt_C5_DNA_methylase C 96.6 0.0073 1.6E-07 37.6 5.1 43 19-63 2-44 (275)
266 KOG2940|consensus 96.5 0.0066 1.4E-07 37.3 4.4 43 16-60 72-114 (325)
267 PF05206 TRM13: Methyltransfer 96.5 0.019 4.1E-07 35.6 6.3 48 4-51 4-57 (259)
268 PF06962 rRNA_methylase: Putat 96.5 0.011 2.3E-07 33.5 4.6 34 43-80 1-34 (140)
269 KOG3178|consensus 96.4 0.0094 2E-07 38.3 4.6 58 17-86 178-235 (342)
270 COG0863 DNA modification methy 96.4 0.044 9.5E-07 34.1 7.5 54 9-65 215-268 (302)
271 COG1565 Uncharacterized conser 96.2 0.052 1.1E-06 35.3 7.3 60 5-64 65-132 (370)
272 KOG2360|consensus 96.2 0.013 2.9E-07 38.2 4.4 65 14-83 211-275 (413)
273 COG3129 Predicted SAM-dependen 96.1 0.014 3.1E-07 35.9 4.3 49 16-65 78-126 (292)
274 PF00145 DNA_methylase: C-5 cy 96.1 0.022 4.8E-07 35.6 5.2 42 19-62 2-43 (335)
275 KOG2352|consensus 96.0 0.0022 4.8E-08 42.7 0.5 60 17-82 296-355 (482)
276 PLN02232 ubiquinone biosynthes 96.0 0.011 2.4E-07 33.9 3.3 37 45-83 1-37 (160)
277 PF03141 Methyltransf_29: Puta 96.0 0.0044 9.6E-08 41.5 1.8 42 19-60 120-161 (506)
278 PF05148 Methyltransf_8: Hypot 95.9 0.025 5.3E-07 34.2 4.6 30 5-35 62-91 (219)
279 KOG2671|consensus 95.8 0.0088 1.9E-07 38.6 2.5 65 13-83 205-276 (421)
280 KOG1098|consensus 95.8 0.014 2.9E-07 40.4 3.5 38 14-51 42-79 (780)
281 KOG2920|consensus 95.8 0.018 3.9E-07 36.1 3.7 38 15-54 115-152 (282)
282 PF02086 MethyltransfD12: D12 95.8 0.026 5.6E-07 34.4 4.4 54 6-62 8-63 (260)
283 KOG0024|consensus 95.7 0.042 9.2E-07 35.3 5.3 45 14-59 167-212 (354)
284 KOG2198|consensus 95.7 0.069 1.5E-06 34.7 6.3 53 13-65 152-207 (375)
285 PRK10458 DNA cytosine methylas 95.6 0.071 1.5E-06 35.8 6.1 43 17-61 88-130 (467)
286 PF07942 N2227: N2227-like pro 95.6 0.23 5.1E-06 31.1 8.0 40 17-59 57-96 (270)
287 KOG2793|consensus 95.4 0.049 1.1E-06 33.7 4.5 34 16-51 86-119 (248)
288 COG1064 AdhP Zn-dependent alco 95.1 0.1 2.3E-06 33.7 5.6 46 14-61 164-210 (339)
289 KOG2912|consensus 95.0 0.086 1.9E-06 34.0 4.9 56 21-81 107-162 (419)
290 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.9 0.049 1.1E-06 33.8 3.6 47 16-64 56-102 (256)
291 KOG1253|consensus 94.8 0.015 3.2E-07 39.1 1.3 63 15-81 108-170 (525)
292 KOG1709|consensus 94.8 0.28 6.1E-06 30.1 6.5 46 15-62 100-145 (271)
293 KOG2782|consensus 94.8 0.061 1.3E-06 33.0 3.7 57 2-61 31-87 (303)
294 cd08283 FDH_like_1 Glutathione 94.7 0.16 3.4E-06 32.9 5.7 46 14-60 182-228 (386)
295 KOG0821|consensus 94.6 0.16 3.4E-06 31.3 5.1 59 16-82 50-108 (326)
296 COG4798 Predicted methyltransf 94.5 0.08 1.7E-06 31.9 3.7 38 14-51 46-83 (238)
297 COG1063 Tdh Threonine dehydrog 94.5 0.18 3.9E-06 32.5 5.5 46 15-61 167-213 (350)
298 KOG1269|consensus 94.3 0.074 1.6E-06 34.6 3.6 55 9-65 103-157 (364)
299 KOG0822|consensus 94.3 0.44 9.5E-06 32.9 7.1 62 19-85 370-434 (649)
300 TIGR00675 dcm DNA-methyltransf 94.3 0.14 3.1E-06 32.5 4.7 41 20-62 1-41 (315)
301 PF02254 TrkA_N: TrkA-N domain 94.0 0.13 2.8E-06 27.5 3.7 36 25-60 4-40 (116)
302 PTZ00357 methyltransferase; Pr 94.0 0.49 1.1E-05 33.9 7.1 65 19-84 703-775 (1072)
303 KOG3045|consensus 94.0 0.13 2.8E-06 32.3 4.0 28 4-32 169-196 (325)
304 COG0270 Dcm Site-specific DNA 93.9 0.26 5.7E-06 31.5 5.5 44 17-62 3-46 (328)
305 COG1568 Predicted methyltransf 93.9 0.37 7.9E-06 30.7 5.8 64 16-86 152-215 (354)
306 PF12692 Methyltransf_17: S-ad 93.6 0.54 1.2E-05 27.1 5.7 44 5-49 16-60 (160)
307 PRK09424 pntA NAD(P) transhydr 93.5 0.3 6.5E-06 33.3 5.4 42 16-59 164-206 (509)
308 PF11899 DUF3419: Protein of u 93.5 0.47 1E-05 31.2 6.1 45 14-61 33-77 (380)
309 PRK08339 short chain dehydroge 93.4 1.1 2.3E-05 27.5 8.0 62 16-83 7-69 (263)
310 KOG1331|consensus 93.4 0.043 9.2E-07 34.5 1.2 42 14-60 43-84 (293)
311 KOG0022|consensus 93.3 0.48 1E-05 30.7 5.7 48 13-60 189-236 (375)
312 KOG3201|consensus 93.3 0.044 9.5E-07 32.1 1.1 48 17-64 30-77 (201)
313 PRK07904 short chain dehydroge 92.9 1.1 2.5E-05 27.2 7.0 64 14-83 5-71 (253)
314 COG5459 Predicted rRNA methyla 92.9 0.089 1.9E-06 34.4 2.1 38 16-53 113-150 (484)
315 PRK06940 short chain dehydroge 92.8 1.4 3E-05 27.2 7.8 58 18-83 3-60 (275)
316 COG4301 Uncharacterized conser 92.5 1.2 2.7E-05 28.0 6.5 50 16-65 78-131 (321)
317 PRK09496 trkA potassium transp 92.4 1.9 4.1E-05 28.5 7.9 43 16-60 230-273 (453)
318 PRK06172 short chain dehydroge 92.4 1.5 3.2E-05 26.4 7.9 61 16-83 6-67 (253)
319 KOG2352|consensus 92.3 1 2.2E-05 30.6 6.4 61 15-83 46-107 (482)
320 PRK07063 short chain dehydroge 92.2 1.6 3.5E-05 26.4 8.1 63 16-83 6-69 (260)
321 PRK07102 short chain dehydroge 92.2 1.6 3.4E-05 26.2 7.5 60 18-83 2-62 (243)
322 PLN02668 indole-3-acetate carb 92.1 0.16 3.6E-06 33.3 2.6 18 17-34 64-81 (386)
323 cd08237 ribitol-5-phosphate_DH 92.0 0.75 1.6E-05 29.3 5.5 46 14-59 161-207 (341)
324 PF05575 V_cholerae_RfbT: Vibr 92.0 0.43 9.3E-06 28.3 4.0 58 7-65 70-127 (286)
325 PRK05599 hypothetical protein; 92.0 1.7 3.8E-05 26.2 7.8 59 19-83 2-60 (246)
326 PF03514 GRAS: GRAS domain fam 92.0 1.1 2.5E-05 29.3 6.3 50 16-65 110-169 (374)
327 COG3510 CmcI Cephalosporin hyd 91.9 0.35 7.6E-06 29.2 3.6 40 15-54 68-110 (237)
328 PRK05867 short chain dehydroge 91.7 1.9 4.1E-05 26.0 7.7 61 16-83 8-69 (253)
329 PF03686 UPF0146: Uncharacteri 91.6 1.4 3.1E-05 24.6 5.7 42 8-52 6-47 (127)
330 TIGR00497 hsdM type I restrict 91.6 1.2 2.5E-05 30.3 6.2 49 16-64 217-268 (501)
331 PRK07062 short chain dehydroge 91.5 2 4.4E-05 26.1 7.9 63 16-83 7-70 (265)
332 PRK09242 tropinone reductase; 91.4 2.1 4.5E-05 25.9 8.0 63 16-83 8-71 (257)
333 PRK06125 short chain dehydroge 91.3 2.1 4.6E-05 25.9 8.0 62 16-83 6-68 (259)
334 PF03492 Methyltransf_7: SAM d 91.3 0.48 1E-05 30.5 4.1 23 15-37 15-37 (334)
335 PRK06124 gluconate 5-dehydroge 91.2 2.1 4.6E-05 25.8 8.0 61 16-83 10-71 (256)
336 PRK07677 short chain dehydroge 91.2 2.2 4.7E-05 25.8 7.7 59 18-83 2-61 (252)
337 KOG2811|consensus 90.6 1.3 2.8E-05 29.3 5.5 40 16-56 182-224 (420)
338 cd08254 hydroxyacyl_CoA_DH 6-h 90.5 2 4.4E-05 26.8 6.4 44 14-59 163-207 (338)
339 COG5379 BtaA S-adenosylmethion 90.4 2 4.3E-05 27.8 6.0 45 14-61 61-105 (414)
340 PF11312 DUF3115: Protein of u 90.4 3.4 7.4E-05 26.7 7.2 66 18-83 88-186 (315)
341 TIGR03201 dearomat_had 6-hydro 90.2 1.5 3.4E-05 27.9 5.6 44 14-59 164-208 (349)
342 PF12242 Eno-Rase_NADH_b: NAD( 90.0 1.3 2.8E-05 22.6 4.1 36 16-51 38-74 (78)
343 COG1255 Uncharacterized protei 90.0 2.1 4.5E-05 23.7 5.9 34 17-52 14-47 (129)
344 PF04072 LCM: Leucine carboxyl 90.0 1.6 3.5E-05 25.5 5.3 62 18-83 80-141 (183)
345 PF02719 Polysacc_synt_2: Poly 90.0 2.1 4.5E-05 27.3 5.9 57 23-83 3-65 (293)
346 PRK03562 glutathione-regulated 89.7 0.95 2.1E-05 31.6 4.7 52 18-83 401-453 (621)
347 PF07279 DUF1442: Protein of u 89.6 3.3 7.1E-05 25.3 8.3 61 17-82 42-106 (218)
348 KOG1201|consensus 89.6 3.4 7.5E-05 26.5 6.6 50 16-65 37-86 (300)
349 PRK03659 glutathione-regulated 89.4 1.2 2.6E-05 30.9 5.0 39 19-59 402-441 (601)
350 PRK10669 putative cation:proto 89.3 1.4 3.1E-05 30.2 5.2 35 25-59 423-458 (558)
351 PRK07890 short chain dehydroge 89.3 3.3 7.1E-05 24.9 8.0 61 16-83 4-65 (258)
352 PLN02427 UDP-apiose/xylose syn 89.3 2.2 4.9E-05 27.6 5.9 62 16-83 13-76 (386)
353 PLN02989 cinnamyl-alcohol dehy 89.3 3.8 8.3E-05 25.7 7.0 63 16-83 4-67 (325)
354 PRK08217 fabG 3-ketoacyl-(acyl 89.1 3.3 7.1E-05 24.7 7.9 60 16-82 4-64 (253)
355 PRK07097 gluconate 5-dehydroge 89.0 3.6 7.9E-05 25.0 7.8 61 16-83 9-70 (265)
356 PRK09880 L-idonate 5-dehydroge 89.0 2 4.3E-05 27.4 5.5 44 15-59 168-212 (343)
357 KOG1099|consensus 89.0 0.75 1.6E-05 28.6 3.3 35 17-51 42-84 (294)
358 PRK07035 short chain dehydroge 88.9 3.5 7.6E-05 24.8 7.9 61 16-83 7-68 (252)
359 PRK05854 short chain dehydroge 88.9 4.2 9.1E-05 25.7 8.1 63 16-83 13-76 (313)
360 PRK06194 hypothetical protein; 88.8 3.9 8.5E-05 25.1 7.8 60 17-83 6-66 (287)
361 COG1062 AdhC Zn-dependent alco 88.8 3 6.5E-05 27.4 6.0 46 14-60 183-229 (366)
362 cd05188 MDR Medium chain reduc 88.7 2.6 5.6E-05 25.3 5.7 43 15-59 133-176 (271)
363 PRK07454 short chain dehydroge 88.7 3.5 7.7E-05 24.6 8.1 61 16-83 5-66 (241)
364 PRK08945 putative oxoacyl-(acy 88.7 3.7 7.9E-05 24.7 7.5 60 16-81 11-71 (247)
365 PF00107 ADH_zinc_N: Zinc-bind 88.6 0.92 2E-05 24.5 3.4 33 26-60 1-33 (130)
366 PRK09186 flagellin modificatio 88.6 3.7 8E-05 24.7 7.7 63 16-83 3-66 (256)
367 TIGR02818 adh_III_F_hyde S-(hy 88.5 2.3 5E-05 27.4 5.6 44 14-59 183-228 (368)
368 PLN02780 ketoreductase/ oxidor 88.5 4.7 0.0001 25.7 7.2 61 17-82 53-114 (320)
369 PF05711 TylF: Macrocin-O-meth 88.5 4.3 9.4E-05 25.3 7.5 67 17-86 75-171 (248)
370 PLN02740 Alcohol dehydrogenase 88.4 3.3 7.2E-05 26.8 6.3 45 13-59 195-241 (381)
371 PRK15057 UDP-glucose 6-dehydro 88.4 1.2 2.6E-05 29.3 4.2 35 26-60 7-41 (388)
372 PRK06914 short chain dehydroge 88.4 4.1 9E-05 24.9 8.2 62 17-83 3-65 (280)
373 PRK05866 short chain dehydroge 88.2 4.6 9.9E-05 25.3 7.9 60 17-83 40-100 (293)
374 KOG3924|consensus 88.1 0.92 2E-05 30.1 3.5 39 14-53 190-228 (419)
375 PRK06139 short chain dehydroge 87.8 5.3 0.00012 25.6 7.5 61 16-83 6-67 (330)
376 PRK07523 gluconate 5-dehydroge 87.8 4.3 9.3E-05 24.5 7.8 61 16-83 9-70 (255)
377 PF02737 3HCDH_N: 3-hydroxyacy 87.8 3.1 6.8E-05 24.3 5.4 43 20-63 2-44 (180)
378 TIGR02822 adh_fam_2 zinc-bindi 87.7 2.9 6.4E-05 26.5 5.6 46 13-60 162-208 (329)
379 PRK07109 short chain dehydroge 87.6 5.5 0.00012 25.5 7.9 61 16-83 7-68 (334)
380 PRK05876 short chain dehydroge 87.6 4.9 0.00011 24.8 7.9 61 16-83 5-66 (275)
381 PLN02662 cinnamyl-alcohol dehy 87.5 3.4 7.4E-05 25.8 5.8 62 17-83 4-66 (322)
382 cd00401 AdoHcyase S-adenosyl-L 87.4 2.4 5.2E-05 28.3 5.2 43 15-59 200-243 (413)
383 PLN02896 cinnamyl-alcohol dehy 87.4 5.7 0.00012 25.4 7.3 62 14-83 7-69 (353)
384 PRK06113 7-alpha-hydroxysteroi 87.3 4.7 0.0001 24.3 7.8 61 16-83 10-71 (255)
385 PRK05786 fabG 3-ketoacyl-(acyl 87.3 4.4 9.6E-05 24.0 7.8 60 16-83 4-64 (238)
386 TIGR03206 benzo_BadH 2-hydroxy 86.9 4.8 0.0001 24.0 8.0 60 17-83 3-63 (250)
387 PLN02540 methylenetetrahydrofo 86.9 7.4 0.00016 27.2 7.4 73 6-83 17-99 (565)
388 PRK08703 short chain dehydroge 86.7 4.9 0.00011 24.0 7.4 47 16-63 5-52 (239)
389 PRK08251 short chain dehydroge 86.6 5 0.00011 24.0 8.0 61 18-83 3-64 (248)
390 COG0677 WecC UDP-N-acetyl-D-ma 86.5 0.84 1.8E-05 30.4 2.7 39 18-58 10-49 (436)
391 PF03721 UDPG_MGDP_dh_N: UDP-g 86.4 4.9 0.00011 23.7 5.9 39 19-59 2-41 (185)
392 PRK07478 short chain dehydroge 86.2 5.4 0.00012 24.0 8.0 61 16-83 5-66 (254)
393 PRK07814 short chain dehydroge 86.2 5.7 0.00012 24.2 8.1 61 16-83 9-70 (263)
394 PRK07831 short chain dehydroge 86.2 5.6 0.00012 24.1 8.1 64 16-83 16-80 (262)
395 PRK15182 Vi polysaccharide bio 86.1 1.9 4.2E-05 28.8 4.3 40 17-58 6-45 (425)
396 KOG2798|consensus 86.0 1.6 3.6E-05 28.3 3.7 46 6-54 134-185 (369)
397 PRK06949 short chain dehydroge 85.8 5.7 0.00012 23.9 7.8 61 16-83 8-69 (258)
398 PRK06181 short chain dehydroge 85.7 6 0.00013 23.9 7.9 59 18-83 2-61 (263)
399 cd08281 liver_ADH_like1 Zinc-d 85.7 3.7 8E-05 26.5 5.3 44 14-59 189-234 (371)
400 PRK15181 Vi polysaccharide bio 85.5 6.8 0.00015 25.1 6.5 65 16-83 14-80 (348)
401 PRK06197 short chain dehydroge 85.5 6.8 0.00015 24.5 8.1 63 16-83 15-78 (306)
402 PRK08213 gluconate 5-dehydroge 85.3 6.2 0.00013 23.9 7.9 61 16-83 11-72 (259)
403 TIGR03366 HpnZ_proposed putati 85.3 3.6 7.7E-05 25.4 5.0 43 15-59 119-163 (280)
404 KOG1562|consensus 85.3 1.6 3.4E-05 28.1 3.4 68 14-83 119-186 (337)
405 PRK08277 D-mannonate oxidoredu 85.3 6.5 0.00014 24.1 7.9 61 16-83 9-70 (278)
406 cd08239 THR_DH_like L-threonin 85.2 5.4 0.00012 25.2 5.9 44 14-59 161-206 (339)
407 PRK08643 acetoin reductase; Va 85.0 6.4 0.00014 23.7 7.9 59 18-83 3-62 (256)
408 PRK08340 glucose-1-dehydrogena 85.0 6.5 0.00014 23.8 7.2 56 19-82 2-58 (259)
409 PF11968 DUF3321: Putative met 84.9 0.99 2.1E-05 27.5 2.3 43 5-51 34-82 (219)
410 TIGR03451 mycoS_dep_FDH mycoth 84.9 4.1 9E-05 26.1 5.3 44 14-59 174-219 (358)
411 PRK08862 short chain dehydroge 84.8 6.5 0.00014 23.6 7.5 47 16-63 4-51 (227)
412 COG0338 Dam Site-specific DNA 84.8 0.65 1.4E-05 29.2 1.6 47 5-55 14-60 (274)
413 PRK08589 short chain dehydroge 84.8 7 0.00015 24.0 7.5 60 16-83 5-65 (272)
414 COG1748 LYS9 Saccharopine dehy 84.7 6.4 0.00014 26.2 6.0 42 18-61 2-45 (389)
415 cd08230 glucose_DH Glucose deh 84.6 5 0.00011 25.7 5.5 43 15-59 171-217 (355)
416 PRK07576 short chain dehydroge 84.2 7.3 0.00016 23.8 7.9 61 16-83 8-69 (264)
417 cd08301 alcohol_DH_plants Plan 84.1 5.2 0.00011 25.7 5.5 44 14-59 185-230 (369)
418 PRK09072 short chain dehydroge 83.9 7.4 0.00016 23.6 7.9 60 16-83 4-64 (263)
419 cd08300 alcohol_DH_class_III c 83.8 6 0.00013 25.5 5.7 44 14-59 184-229 (368)
420 PRK13394 3-hydroxybutyrate deh 83.6 7.4 0.00016 23.4 7.9 60 17-83 7-67 (262)
421 PRK12826 3-ketoacyl-(acyl-carr 83.4 7.3 0.00016 23.2 7.9 61 16-83 5-66 (251)
422 COG2933 Predicted SAM-dependen 83.3 4.1 8.9E-05 26.0 4.5 35 14-51 209-243 (358)
423 KOG1209|consensus 83.2 3 6.5E-05 25.9 3.8 35 15-49 5-40 (289)
424 PRK13978 ribose-5-phosphate is 83.0 7.2 0.00016 24.0 5.4 47 10-59 15-66 (228)
425 TIGR00561 pntA NAD(P) transhyd 82.9 5.6 0.00012 27.4 5.4 42 16-59 163-205 (511)
426 PRK07231 fabG 3-ketoacyl-(acyl 82.8 7.9 0.00017 23.1 7.8 59 17-83 5-64 (251)
427 PRK12939 short chain dehydroge 82.7 8 0.00017 23.1 8.0 61 16-83 6-67 (250)
428 cd08255 2-desacetyl-2-hydroxye 82.6 6.2 0.00014 24.0 5.3 45 14-60 95-141 (277)
429 TIGR00571 dam DNA adenine meth 82.5 5.9 0.00013 24.7 5.1 47 5-56 13-60 (266)
430 PLN03154 putative allyl alcoho 82.5 10 0.00023 24.3 6.7 43 14-58 156-200 (348)
431 TIGR02825 B4_12hDH leukotriene 82.3 9.9 0.00021 23.9 7.0 44 14-59 136-181 (325)
432 PRK05650 short chain dehydroge 82.0 9.2 0.0002 23.3 7.8 58 19-83 2-60 (270)
433 cd08245 CAD Cinnamyl alcohol d 81.6 8.4 0.00018 24.1 5.7 44 14-59 160-204 (330)
434 cd08277 liver_alcohol_DH_like 81.5 7.9 0.00017 24.9 5.6 44 14-59 182-227 (365)
435 TIGR01500 sepiapter_red sepiap 81.5 9.4 0.0002 23.1 7.1 59 20-83 3-66 (256)
436 PRK05875 short chain dehydroge 81.5 9.7 0.00021 23.2 8.0 63 16-83 6-69 (276)
437 cd08261 Zn_ADH7 Alcohol dehydr 81.3 8.3 0.00018 24.3 5.6 45 13-59 156-201 (337)
438 PRK08085 gluconate 5-dehydroge 81.1 9.7 0.00021 22.9 7.8 61 16-83 8-69 (254)
439 PRK12384 sorbitol-6-phosphate 80.8 10 0.00022 22.9 7.8 61 18-83 3-64 (259)
440 PF07101 DUF1363: Protein of u 80.7 0.65 1.4E-05 24.7 0.4 17 20-36 6-22 (124)
441 PRK08303 short chain dehydroge 80.7 12 0.00026 23.7 7.4 34 16-50 7-41 (305)
442 PLN02384 ribose-5-phosphate is 80.6 9.3 0.0002 24.1 5.4 47 10-59 43-95 (264)
443 PRK01747 mnmC bifunctional tRN 80.6 4 8.6E-05 28.7 4.2 35 17-51 58-103 (662)
444 PLN02827 Alcohol dehydrogenase 80.1 9.5 0.00021 24.8 5.6 44 14-59 191-236 (378)
445 cd08294 leukotriene_B4_DH_like 80.0 12 0.00026 23.4 6.6 44 14-59 141-186 (329)
446 PRK07791 short chain dehydroge 79.9 12 0.00026 23.3 7.5 35 16-51 5-40 (286)
447 PRK07666 fabG 3-ketoacyl-(acyl 79.8 10 0.00023 22.5 8.0 60 17-83 7-67 (239)
448 PRK10904 DNA adenine methylase 79.7 4.5 9.7E-05 25.3 3.9 47 5-56 16-62 (271)
449 PRK12429 3-hydroxybutyrate deh 79.5 11 0.00024 22.6 8.0 60 17-83 4-64 (258)
450 PRK06935 2-deoxy-D-gluconate 3 79.4 11 0.00024 22.7 7.4 60 16-83 14-74 (258)
451 PLN02657 3,8-divinyl protochlo 79.4 10 0.00023 24.9 5.7 37 15-52 58-95 (390)
452 PRK05855 short chain dehydroge 79.2 17 0.00037 24.6 8.0 60 17-83 315-375 (582)
453 PRK08594 enoyl-(acyl carrier p 79.2 12 0.00026 22.8 6.6 35 16-50 6-42 (257)
454 PRK09291 short chain dehydroge 79.0 11 0.00025 22.6 7.5 59 18-83 3-62 (257)
455 TIGR03589 PseB UDP-N-acetylglu 79.0 14 0.0003 23.5 6.6 59 16-83 3-64 (324)
456 PRK07326 short chain dehydroge 79.0 11 0.00024 22.3 7.8 60 16-83 5-65 (237)
457 TIGR02632 RhaD_aldol-ADH rhamn 78.8 21 0.00045 25.5 8.2 62 17-83 414-476 (676)
458 PRK08293 3-hydroxybutyryl-CoA 78.7 12 0.00026 23.4 5.6 43 18-61 4-46 (287)
459 TIGR01202 bchC 2-desacetyl-2-h 78.6 14 0.0003 23.3 6.2 44 15-59 143-187 (308)
460 PRK06138 short chain dehydroge 78.6 12 0.00025 22.4 7.7 60 16-83 4-64 (252)
461 COG1004 Ugd Predicted UDP-gluc 78.6 4.7 0.0001 27.0 3.8 40 19-60 2-42 (414)
462 PRK07453 protochlorophyllide o 78.5 14 0.0003 23.3 7.9 61 16-83 5-66 (322)
463 PRK07024 short chain dehydroge 78.4 12 0.00027 22.6 7.5 58 18-83 3-61 (257)
464 KOG0023|consensus 78.3 14 0.0003 24.3 5.7 42 14-57 179-221 (360)
465 COG3392 Adenine-specific DNA m 77.9 5.1 0.00011 25.5 3.7 35 14-51 25-59 (330)
466 PRK08267 short chain dehydroge 77.8 13 0.00028 22.5 7.1 56 19-83 3-59 (260)
467 PRK07201 short chain dehydroge 77.8 21 0.00045 24.9 7.7 60 17-83 371-431 (657)
468 cd00423 Pterin_binding Pterin 77.7 14 0.00031 22.9 6.2 56 5-60 25-95 (258)
469 cd08238 sorbose_phosphate_red 77.5 11 0.00023 24.8 5.3 47 14-60 173-222 (410)
470 PRK09496 trkA potassium transp 77.5 18 0.00039 24.0 6.9 39 19-59 2-41 (453)
471 PRK12829 short chain dehydroge 77.4 13 0.00028 22.4 7.6 60 15-83 9-69 (264)
472 PLN02253 xanthoxin dehydrogena 77.4 14 0.0003 22.6 7.4 59 17-83 18-77 (280)
473 COG1743 Adenine-specific DNA m 77.4 4.7 0.0001 29.3 3.7 43 16-61 90-132 (875)
474 KOG4169|consensus 77.3 14 0.0003 23.2 5.3 61 17-83 5-66 (261)
475 KOG2918|consensus 77.2 14 0.00031 24.1 5.5 50 8-57 79-129 (335)
476 COG1086 Predicted nucleoside-d 76.9 23 0.00051 25.0 7.1 63 16-83 249-313 (588)
477 cd08295 double_bond_reductase_ 76.9 16 0.00035 23.1 6.5 44 14-59 149-194 (338)
478 PRK10309 galactitol-1-phosphat 76.6 12 0.00026 23.8 5.3 44 14-59 158-203 (347)
479 PRK06153 hypothetical protein; 76.6 6.1 0.00013 26.3 3.9 34 16-50 175-209 (393)
480 PLN03209 translocon at the inn 76.1 25 0.00053 24.9 7.7 67 16-83 79-149 (576)
481 cd08232 idonate-5-DH L-idonate 76.1 12 0.00027 23.5 5.2 42 16-59 165-208 (339)
482 PRK09135 pteridine reductase; 76.0 14 0.0003 22.0 7.8 62 16-83 5-68 (249)
483 PRK07774 short chain dehydroge 75.9 14 0.00031 22.0 7.9 61 16-83 5-66 (250)
484 PRK06198 short chain dehydroge 75.8 15 0.00032 22.1 7.5 61 16-83 5-67 (260)
485 PLN02650 dihydroflavonol-4-red 75.5 18 0.0004 23.1 6.4 62 17-83 5-67 (351)
486 TIGR00936 ahcY adenosylhomocys 75.4 11 0.00024 25.2 5.0 38 15-54 193-231 (406)
487 PRK12475 thiamine/molybdopteri 75.4 20 0.00043 23.4 6.5 35 16-51 23-58 (338)
488 KOG1205|consensus 75.3 19 0.0004 23.0 6.8 64 16-83 11-74 (282)
489 PF07993 NAD_binding_4: Male s 75.3 16 0.00034 22.2 6.0 61 24-84 2-72 (249)
490 TIGR01963 PHB_DH 3-hydroxybuty 75.1 15 0.00033 21.9 7.7 58 19-83 3-61 (255)
491 TIGR00518 alaDH alanine dehydr 75.1 14 0.00031 24.2 5.4 41 17-59 167-208 (370)
492 PRK06720 hypothetical protein; 75.0 14 0.0003 21.4 8.0 60 16-82 15-75 (169)
493 cd05278 FDH_like Formaldehyde 74.6 18 0.00039 22.8 5.7 45 14-59 165-210 (347)
494 PRK12481 2-deoxy-D-gluconate 3 74.6 16 0.00035 22.1 7.2 59 16-83 7-66 (251)
495 PLN02353 probable UDP-glucose 74.4 8.7 0.00019 26.2 4.3 43 18-60 2-45 (473)
496 TIGR02415 23BDH acetoin reduct 74.3 16 0.00035 21.9 7.7 58 19-83 2-60 (254)
497 TIGR02356 adenyl_thiF thiazole 74.2 16 0.00035 21.8 6.1 34 16-50 20-54 (202)
498 PRK08226 short chain dehydroge 74.0 17 0.00037 22.0 7.8 60 16-83 5-65 (263)
499 PF03435 Saccharop_dh: Sacchar 73.7 22 0.00048 23.2 6.7 54 20-83 1-57 (386)
500 PF04378 RsmJ: Ribosomal RNA s 73.4 6.1 0.00013 24.6 3.2 55 21-85 62-116 (245)
No 1
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.69 E-value=5.5e-16 Score=83.50 Aligned_cols=61 Identities=28% Similarity=0.544 Sum_probs=55.3
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
|+.+|||+|||+|..+..+++.. +..+++++|+|+.+++.++++....+ ...+++++++|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECcc
Confidence 57899999999999999999965 68899999999999999999996655 578999999998
No 2
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.68 E-value=7.9e-16 Score=87.17 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=58.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (88)
+++.+|||+|||+|.++..+++...++.+++|+|+++.+++.|+++++..+ ..+++|.++|+++ ++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~-l~ 67 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIED-LP 67 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTC-GC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhc-cc
Confidence 467899999999999999999765578899999999999999999999887 5699999999988 54
No 3
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.64 E-value=5.1e-15 Score=88.14 Aligned_cols=76 Identities=38% Similarity=0.593 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
++.+++.+. +.++.+|||+|||+|..+..+++..++.++|+++|+++++++.|+++++.++ ..+++++.+|+.
T Consensus 66 ~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~~ 138 (215)
T TIGR00080 66 VAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVGDGT 138 (215)
T ss_pred HHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCcc
Confidence 345555554 5678899999999999999999987666789999999999999999999887 578999999987
Q ss_pred ccc
Q psy8023 83 IQY 85 (88)
Q Consensus 83 ~~~ 85 (88)
+.+
T Consensus 139 ~~~ 141 (215)
T TIGR00080 139 QGW 141 (215)
T ss_pred cCC
Confidence 654
No 4
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.63 E-value=7e-15 Score=87.05 Aligned_cols=76 Identities=30% Similarity=0.474 Sum_probs=62.2
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
.+++.+. ..++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++..++ ...+++++.+|+.++
T Consensus 63 ~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~----~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 63 MMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG----YWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEEECCcccC
Confidence 3444443 4567899999999999999999987656799999999999999999998876 445789999998875
Q ss_pred cc
Q psy8023 85 YL 86 (88)
Q Consensus 85 ~~ 86 (88)
++
T Consensus 137 ~~ 138 (205)
T PRK13944 137 LE 138 (205)
T ss_pred Cc
Confidence 53
No 5
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.62 E-value=8.4e-15 Score=87.14 Aligned_cols=76 Identities=39% Similarity=0.623 Sum_probs=64.1
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
+..+++.+. +.++.+|||+|||+|+.+..+++..++.++|+++|+++++++.++++++..+ ..+++++.+|+.
T Consensus 65 ~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~~ 137 (212)
T PRK13942 65 VAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVIVGDGT 137 (212)
T ss_pred HHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcc
Confidence 344555554 5688899999999999999999987667899999999999999999999877 568999999987
Q ss_pred ccc
Q psy8023 83 IQY 85 (88)
Q Consensus 83 ~~~ 85 (88)
..+
T Consensus 138 ~~~ 140 (212)
T PRK13942 138 LGY 140 (212)
T ss_pred cCC
Confidence 644
No 6
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.61 E-value=7.9e-15 Score=87.06 Aligned_cols=78 Identities=42% Similarity=0.602 Sum_probs=67.1
Q ss_pred cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
+++++++.+. +.++.+|||+|||+|+.+..+++..++.++|+++|.++...+.|++++...+ ..++.++.+|.
T Consensus 60 ~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-----~~nv~~~~gdg 132 (209)
T PF01135_consen 60 MVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-----IDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-----THSEEEEES-G
T ss_pred HHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-----cCceeEEEcch
Confidence 4677888887 8899999999999999999999998888899999999999999999999887 77999999999
Q ss_pred ccccc
Q psy8023 82 DIQYL 86 (88)
Q Consensus 82 ~~~~~ 86 (88)
..+++
T Consensus 133 ~~g~~ 137 (209)
T PF01135_consen 133 SEGWP 137 (209)
T ss_dssp GGTTG
T ss_pred hhccc
Confidence 88764
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.61 E-value=6.1e-15 Score=88.83 Aligned_cols=65 Identities=31% Similarity=0.565 Sum_probs=49.8
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||||..+..+++..++.++|+++|+|+.|++.++++....+ ..+++++++|+++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~ 109 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAED 109 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHH
Confidence 4577899999999999999999988778899999999999999999999876 5599999999876
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=1.2e-14 Score=87.55 Aligned_cols=63 Identities=29% Similarity=0.519 Sum_probs=57.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.+|||+|||||..+..+++..+ .++|+++|+|+.|++.++++....+ ..+++|+.+|+++
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dAe~ 112 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDAEN 112 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEechhh
Confidence 3789999999999999999999985 8999999999999999999999866 4449999999875
No 9
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.58 E-value=4.3e-14 Score=85.74 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=58.1
Q ss_pred HhhcCCCCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 10 LKDNLKPGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 10 ~~~~~~~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+....+++.+|||+|||+|..+..+++.. .++.+++++|+|+.|++.|++++..++ ...+++++++|+.+
T Consensus 50 ~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~----~~~~v~~~~~d~~~ 120 (247)
T PRK15451 50 AERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDIRD 120 (247)
T ss_pred HHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEeCChhh
Confidence 33345678899999999999999988853 367899999999999999999998766 44578999998764
No 10
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.57 E-value=2.8e-14 Score=83.54 Aligned_cols=65 Identities=23% Similarity=0.263 Sum_probs=57.3
Q ss_pred cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++++.+|||+|||+|..++.++... +..+|+++|.++.+++.++++.+.++ ..+++++.+|+.+
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~ 106 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEE 106 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhh
Confidence 35568899999999999999999875 67899999999999999999999887 4559999999876
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.55 E-value=8.6e-14 Score=83.36 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=56.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++....+ ..+++++++|+.+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~ 107 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAME 107 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechhc
Confidence 4567899999999999999999987677899999999999999999987765 4678898888765
No 12
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.55 E-value=1.5e-13 Score=79.26 Aligned_cols=73 Identities=26% Similarity=0.382 Sum_probs=60.8
Q ss_pred HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
+++.+... ++.++||+|||+|.+++.+++.. +..+++++|+++.+++.+++++..++ ..+++++..|..+.+
T Consensus 23 L~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~-----~~~v~~~~~d~~~~~ 94 (170)
T PF05175_consen 23 LLDNLPKH--KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNG-----LENVEVVQSDLFEAL 94 (170)
T ss_dssp HHHHHHHH--TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTT-----CTTEEEEESSTTTTC
T ss_pred HHHHHhhc--cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcC-----ccccccccccccccc
Confidence 44445432 66799999999999999999985 67789999999999999999999988 344999999987765
Q ss_pred c
Q psy8023 86 L 86 (88)
Q Consensus 86 ~ 86 (88)
+
T Consensus 95 ~ 95 (170)
T PF05175_consen 95 P 95 (170)
T ss_dssp C
T ss_pred c
Confidence 4
No 13
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8.6e-14 Score=82.09 Aligned_cols=75 Identities=40% Similarity=0.637 Sum_probs=68.0
Q ss_pred cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
|++++++.+. +.++.+|||+|||+|+.+..+++..+ +|+.+|..++..+.|++++...+ ..++.+.++|.
T Consensus 60 ~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg-----~~nV~v~~gDG 129 (209)
T COG2518 60 MVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLG-----YENVTVRHGDG 129 (209)
T ss_pred HHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcC-----CCceEEEECCc
Confidence 5677888887 78899999999999999999999864 79999999999999999999988 77799999999
Q ss_pred ccccc
Q psy8023 82 DIQYL 86 (88)
Q Consensus 82 ~~~~~ 86 (88)
..++|
T Consensus 130 ~~G~~ 134 (209)
T COG2518 130 SKGWP 134 (209)
T ss_pred ccCCC
Confidence 99875
No 14
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.53 E-value=1.9e-13 Score=82.40 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=55.9
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||+|..+..+++.+. ++.+++++|+|+.+++.|++++...+ ...+++++++|+.+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~----~~~~v~~~~~d~~~ 117 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRH 117 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECChhh
Confidence 45778999999999999999998753 57899999999999999999987755 34578899988765
No 15
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.53 E-value=2.3e-13 Score=74.19 Aligned_cols=64 Identities=36% Similarity=0.477 Sum_probs=54.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|+|+|||+|..+..+++.. +..+++++|+++.+++.++++++.++ ..+++++.+|+..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~ 80 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFG-----VSNIVIVEGDAPE 80 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhC-----CCceEEEeccccc
Confidence 4567799999999999999999986 55899999999999999999998876 4568888887653
No 16
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.53 E-value=2e-13 Score=79.69 Aligned_cols=64 Identities=27% Similarity=0.334 Sum_probs=55.4
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||+|.+++.+++.. ++.+++++|+++.+++.+++++..++ ..+++++.+|+..
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~i~~~~~d~~~ 92 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFG-----CGNIDIIPGEAPI 92 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCCeEEEecCchh
Confidence 4577899999999999999999885 67899999999999999999998776 3568888888653
No 17
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.52 E-value=9.1e-14 Score=81.00 Aligned_cols=62 Identities=24% Similarity=0.227 Sum_probs=54.7
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++.+|||+|||+|..++.++... +..+|+++|.++.+++.++++.++++ ..+++++.+|+.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~-----~~~i~~i~~d~~~ 103 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELG-----LNNVEIVNGRAED 103 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhC-----CCCeEEEecchhh
Confidence 47899999999999999998764 67899999999999999999998876 4579999999876
No 18
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.52 E-value=2.8e-13 Score=78.57 Aligned_cols=66 Identities=30% Similarity=0.462 Sum_probs=60.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
+.++.+++|+|||+|.+++.++ ...|.++++++|-++++++..++|..+.+ .++++++.+|+-+-+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~~vv~g~Ap~~L 97 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFG-----VDNLEVVEGDAPEAL 97 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhC-----CCcEEEEeccchHhh
Confidence 6788999999999999999999 44689999999999999999999999988 889999999987643
No 19
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.52 E-value=2e-13 Score=80.29 Aligned_cols=64 Identities=27% Similarity=0.338 Sum_probs=55.8
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||+|.++..++... +..+++++|+++.+++.++++++.++ ..+++++.+|+.+
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~~v~~~~~d~~~ 101 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFG-----VKNVEVIEGSAPE 101 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCeEEEECchHH
Confidence 4577899999999999999998764 66899999999999999999998876 4678999998865
No 20
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.51 E-value=2.9e-13 Score=79.76 Aligned_cols=67 Identities=30% Similarity=0.358 Sum_probs=58.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
+.++.+|||+|||+|.+++.++...++..+++++|+++.+++.++++++.++ ...+++++.+|..+.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g----~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG----VLNNIVLIKGEAPEI 104 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCCeEEEEechhhh
Confidence 5678899999999999999999877667799999999999999999998876 446788888888653
No 21
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.50 E-value=2.5e-13 Score=84.20 Aligned_cols=61 Identities=34% Similarity=0.529 Sum_probs=54.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
++.|++.+..+..++++|||+|||+|.+++..++.. ..+|+|+|++|.+++.|++|+..|+
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~ 208 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNG 208 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcC
Confidence 567889998888899999999999999999988874 3489999999999999999999988
No 22
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.49 E-value=4.3e-13 Score=84.07 Aligned_cols=66 Identities=29% Similarity=0.471 Sum_probs=57.6
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
+.++.+|||+|||+|.++..+++..+..++|+++|+++++++.|+++++.++ ..++.++.+|+.+.
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~~~ 143 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGYYG 143 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChhhc
Confidence 5677899999999999999999987545689999999999999999999877 56789999997654
No 23
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=4e-13 Score=82.52 Aligned_cols=64 Identities=30% Similarity=0.317 Sum_probs=58.5
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.+|+++||+|||.|.+++..++.+ +.+|+|+++|+++.+.++++++..+ ...+++++..|-.+
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g----l~~~v~v~l~d~rd 133 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG----LEDNVEVRLQDYRD 133 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC----CCcccEEEeccccc
Confidence 6899999999999999999999997 6799999999999999999999988 55689998888665
No 24
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.49 E-value=6.2e-13 Score=81.31 Aligned_cols=68 Identities=26% Similarity=0.322 Sum_probs=54.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++.+|||+|||+|.++..+++..++.++|+|+|+|++|++.|+++...... ....+++++++|+.+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATD 138 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEccccc
Confidence 45778999999999999999998876667999999999999999887642110 024578899998764
No 25
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.48 E-value=4.4e-13 Score=82.83 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=56.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
++.+|||+|||+|.+++.+++.. ++.+++++|+|+.+++.|++|+..++ ...+++++.+|+.+.+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~----~~~~i~~~~~D~~~~~ 185 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHG----LEDRVTLIQSDLFAAL 185 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhhcc
Confidence 45689999999999999999986 67799999999999999999999887 4467999999986544
No 26
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.48 E-value=3.2e-13 Score=79.83 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=54.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++...++ ..+++++++|+.
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~ 100 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAV 100 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHH
Confidence 356799999999999999999886 66789999999999999999998776 467999999983
No 27
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.48 E-value=5.2e-13 Score=83.09 Aligned_cols=77 Identities=13% Similarity=0.236 Sum_probs=60.8
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
.....+...++++.+|||+|||+|..+..+++...+..+++++|+|++|++.+++++.... +..++.++++|..+.
T Consensus 52 ~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 52 RHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADFTQP 127 (301)
T ss_pred HHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEcccch
Confidence 3444555556677899999999999999999987435789999999999999999887533 245678889998764
Q ss_pred c
Q psy8023 85 Y 85 (88)
Q Consensus 85 ~ 85 (88)
+
T Consensus 128 ~ 128 (301)
T TIGR03438 128 L 128 (301)
T ss_pred h
Confidence 3
No 28
>PLN02244 tocopherol O-methyltransferase
Probab=99.48 E-value=6.2e-13 Score=83.95 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=55.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.++++....+ ...+++++.+|+.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g----~~~~v~~~~~D~~~ 179 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQG----LSDKVSFQVADALN 179 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEcCccc
Confidence 456799999999999999999876 5689999999999999999988766 45679999999865
No 29
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.47 E-value=7.2e-13 Score=85.17 Aligned_cols=73 Identities=22% Similarity=0.229 Sum_probs=60.2
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.+++.+....+++.+|||+|||+|.+++.++... +..+++++|+|+.+++.+++|.+.++ .+++++.+|..+
T Consensus 239 E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g------~rV~fi~gDl~e 311 (423)
T PRK14966 239 EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLG------ARVEFAHGSWFD 311 (423)
T ss_pred HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEcchhc
Confidence 44555555555666799999999999999998875 67899999999999999999998765 278899998754
No 30
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.47 E-value=2.7e-13 Score=81.98 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=60.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
.+...+|||+|||+|..++.++++. ++.+++++|+++++.+.|+++++.++ +.++++++++|+.+..
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~----l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNP----LEERIQVIEADIKEFL 108 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCc----chhceeEehhhHHHhh
Confidence 3447799999999999999999996 45899999999999999999999988 7899999999988643
No 31
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=5.9e-13 Score=82.13 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=53.3
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
+|+|+|||+|.+++.++... +..+|+++|+|+.+++.|++|...++ . .++.++.+|..+.+
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~----l-~~~~~~~~dlf~~~ 173 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNG----L-VRVLVVQSDLFEPL 173 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcC----C-ccEEEEeeeccccc
Confidence 79999999999999999996 67899999999999999999999988 3 66667776766544
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.46 E-value=5.8e-13 Score=70.79 Aligned_cols=58 Identities=24% Similarity=0.450 Sum_probs=47.2
Q ss_pred EEEecCCCChHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 20 VLDIGSGSGYLTACFADLV--GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 20 vlD~g~G~G~~~~~l~~~~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
|||+|||+|..+..+.+.+ ++..+++++|+|+++++.++++....+ .+++++++|+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~ 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARD 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTC
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhH
Confidence 7999999999999999986 334799999999999999999998755 288999999876
No 33
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=4.5e-13 Score=82.83 Aligned_cols=63 Identities=33% Similarity=0.464 Sum_probs=56.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCC
Q psy8023 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67 (88)
Q Consensus 3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~ 67 (88)
++.|++++..+..++.++||+|||+|.+++..++.. -.+++|+|++|.+++.|++|++.|+..
T Consensus 149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~ 211 (300)
T COG2264 149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVE 211 (300)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCc
Confidence 567899999988999999999999999999998874 347999999999999999999998833
No 34
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.45 E-value=1e-12 Score=79.32 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=62.9
Q ss_pred HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
++..+.. ..++++|||+|||+|+.++.++...++.++++++|+++++++.|+++++.++ ...+++++.+|+.+.+
T Consensus 59 ~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g----l~~~i~~~~gda~~~L 133 (234)
T PLN02781 59 FLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG----VDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEccHHHHH
Confidence 3444442 3467799999999999999999987678899999999999999999999988 5678999999987653
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.44 E-value=9e-13 Score=81.07 Aligned_cols=64 Identities=30% Similarity=0.381 Sum_probs=52.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.+|.+|||+|||.|.++..+++.+ +++|+++.+|++..+.+++++++.+ ..+++++...|..+
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~g----l~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAG----LEDRVEVRLQDYRD 123 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCST----SSSTEEEEES-GGG
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEeeccc
Confidence 6789999999999999999999997 6799999999999999999999887 67789999998765
No 36
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.44 E-value=1.6e-12 Score=80.33 Aligned_cols=63 Identities=25% Similarity=0.349 Sum_probs=55.4
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
.+|||+|||+|.+++.++... ++.+++++|+|+.+++.|++|...++ ...+++++.+|..+.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~----~~~~v~~~~~d~~~~~ 178 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQ----LEHRVEFIQSNLFEPL 178 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhccC
Confidence 689999999999999999986 66799999999999999999999877 3446999999987654
No 37
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=1.2e-12 Score=79.75 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=53.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.+|||+|||+|.++..+++. +.+|+++|+|+++++.|+++....+ ...+++++++|+.+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g----~~~~v~~~~~d~~~ 104 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKG----VSDNMQFIHCAAQD 104 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcC----CccceEEEEcCHHH
Confidence 45679999999999999999886 3589999999999999999998776 45678999888765
No 38
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.44 E-value=6.8e-13 Score=78.00 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=56.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+..++||+|||+|.++..+++.. |+.+++|+|+++.+++.|+++....+ ..+++++++|+.+
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~ 77 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANE 77 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHH
Confidence 356799999999999999999986 77899999999999999999998776 5689999999865
No 39
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.43 E-value=2e-12 Score=77.10 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=52.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.+|||+|||+|.++..++.. ..+++|+|+++++++.++++....+ ...++++.++|+.+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRD----VAGNVEFEVNDLLS 115 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECChhh
Confidence 45789999999999999999875 3489999999999999999988765 33578888888654
No 40
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.43 E-value=1.9e-12 Score=82.63 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=54.4
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
+.+|||+|||+|.+++.+++.. |..+|+++|+|+.+++.+++|++.++.. ...++++..+|..+.+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~ 294 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV 294 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccC
Confidence 4589999999999999999986 7789999999999999999999877611 0236788888876543
No 41
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.43 E-value=1.3e-12 Score=84.94 Aligned_cols=63 Identities=22% Similarity=0.238 Sum_probs=55.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
..++.+|||+|||+|.+++.+++.. .+++++|+|+.+++.|++|...++ ..+++++.+|+.+.
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~~~d~~~~ 357 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNG-----LDNVTFYHANLEED 357 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEeChHHh
Confidence 3567899999999999999999874 479999999999999999999877 56799999998653
No 42
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=1.3e-12 Score=81.50 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=55.8
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
.+|||+|||+|.+++.++... +..+++++|+|+.+++.|++|++.++ ...+++++++|+.+.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~----l~~~i~~~~~D~~~~l 197 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHG----LEDRVTLIESDLFAAL 197 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC----CCCcEEEEECchhhhC
Confidence 689999999999999999986 67899999999999999999999877 4467999999986644
No 43
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.42 E-value=3.4e-12 Score=75.81 Aligned_cols=64 Identities=36% Similarity=0.500 Sum_probs=54.6
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
..++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++++++.+ ..++++..+|..+.+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLG-----LHNVSVRHGDGWKGW 139 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCC-----CCceEEEECCcccCC
Confidence 4677899999999999998877764 279999999999999999998876 556899999876654
No 44
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.41 E-value=2.6e-12 Score=75.72 Aligned_cols=68 Identities=22% Similarity=0.162 Sum_probs=53.8
Q ss_pred HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++.+. ..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ ..++++..+|+.+
T Consensus 22 l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~ 89 (197)
T PRK11207 22 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLNN 89 (197)
T ss_pred HHHhcc--cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChhh
Confidence 444443 345679999999999999999985 3589999999999999999988766 4557777777653
No 45
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.40 E-value=2e-12 Score=76.67 Aligned_cols=76 Identities=24% Similarity=0.401 Sum_probs=62.9
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
.++..+.. ....++|||+||++|+.++.+++..+++++++.+|.+++..+.|++++++.+ ..++++++.+|+.+.
T Consensus 35 ~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag----~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 35 QLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG----LDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT----GGGGEEEEES-HHHH
T ss_pred HHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC----CCCcEEEEEeccHhh
Confidence 34444443 2355799999999999999999998778999999999999999999999988 667999999999865
Q ss_pred c
Q psy8023 85 Y 85 (88)
Q Consensus 85 ~ 85 (88)
+
T Consensus 110 l 110 (205)
T PF01596_consen 110 L 110 (205)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.39 E-value=2.5e-12 Score=69.68 Aligned_cols=62 Identities=26% Similarity=0.374 Sum_probs=55.3
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
|.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++..++ ...+++++++|..+.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~----~~~~~~~~~~D~~~~ 62 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNG----LDDRVEVIVGDARDL 62 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCT----TTTTEEEEESHHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHcc----CCceEEEEECchhhc
Confidence 4589999999999999999985 5789999999999999999999987 557899999998764
No 47
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.39 E-value=4.5e-12 Score=75.12 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=42.1
Q ss_pred cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
..+++.+|||+|||+|..+..+.+.. +..+++|+|+|+.+++.|+++.
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC
Confidence 35677799999999999999998875 5678999999999999998864
No 48
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.39 E-value=4.9e-12 Score=76.94 Aligned_cols=71 Identities=30% Similarity=0.433 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE 80 (88)
Q Consensus 4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 80 (88)
..+++.+.....++.+|||+|||+|..++.+++.. ..+++++|+++.+++.|+++...++ ...++.+..+|
T Consensus 107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g--~~~v~giDis~~~l~~A~~n~~~~~----~~~~~~~~~~~ 177 (250)
T PRK00517 107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG--AKKVLAVDIDPQAVEAARENAELNG----VELNVYLPQGD 177 (250)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcC----CCceEEEccCC
Confidence 45666666556788999999999999988776653 3369999999999999999998877 22444544443
No 49
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.39 E-value=7.5e-12 Score=75.62 Aligned_cols=64 Identities=25% Similarity=0.268 Sum_probs=55.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
.+.+|||+|||+|.++..++... +..+++++|+++.+++.+++++..++ ..+++++.+|..+.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~ 150 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLG-----LDNVTFLQSDWFEPL 150 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhccC
Confidence 34589999999999999999986 66799999999999999999998876 457899999986643
No 50
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.39 E-value=4.4e-12 Score=83.63 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=54.6
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
+.+|||+|||+|.+++.++... ++.+++++|+|+.+++.|++|+..++ ...+++++.+|..+.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~----l~~~v~~~~~D~~~~ 201 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYE----VTDRIQIIHSNWFEN 201 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcC----Cccceeeeecchhhh
Confidence 4689999999999999999886 67899999999999999999998876 445788888887653
No 51
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.38 E-value=3.6e-12 Score=79.76 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=54.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|+++.+.++ ..+++++.+|+.+.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~~~D~~~~ 233 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELG-----LTNVQFQALDSTQF 233 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEcCHHHH
Confidence 4679999999999999999985 3589999999999999999999887 46899999998653
No 52
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.38 E-value=7.4e-12 Score=77.53 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=55.1
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE 80 (88)
Q Consensus 4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 80 (88)
+.+++.+.....++.+|||+|||+|.+++.+++.. ..+++++|+++.+++.++++...++ ...++.+..+|
T Consensus 147 ~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n~----~~~~~~~~~~~ 217 (288)
T TIGR00406 147 SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELNQ----VSDRLQVKLIY 217 (288)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcC----CCcceEEEecc
Confidence 44566666556678999999999999998887652 4589999999999999999998876 33445555544
No 53
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.4e-12 Score=74.20 Aligned_cols=61 Identities=30% Similarity=0.305 Sum_probs=53.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
.++.|+|+|||||.+++..+-.. ..+|+++|+++++++.+++|..+. ..+++|+++|+.+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~ 105 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDF 105 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhc
Confidence 56789999999999999988774 358999999999999999999983 57899999998863
No 54
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.37 E-value=1.5e-11 Score=74.73 Aligned_cols=68 Identities=25% Similarity=0.402 Sum_probs=56.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc-ccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD-IQY 85 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-~~~ 85 (88)
+.+|++|+|.|+|+|.++..+++..+|.++|+..|+.++..+.|+++++.++ ..+++++.+.|+. +++
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g----l~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG----LDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT----CCTTEEEEES-GGCG--
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC----CCCCceeEecceecccc
Confidence 7899999999999999999999999999999999999999999999999988 6679999999985 444
No 55
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.37 E-value=6.1e-12 Score=77.12 Aligned_cols=65 Identities=37% Similarity=0.561 Sum_probs=55.6
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++.+|||+|||+|..+..++...++..+++++|+++.+++.++++....+ ..++++..+|+.+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~ 139 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEA 139 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhh
Confidence 4678899999999999988888877667789999999999999999988766 4578888888754
No 56
>PLN02476 O-methyltransferase
Probab=99.37 E-value=8.6e-12 Score=76.79 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=64.2
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
+++..+.. ..+.++|||+||++|+.++.++...+++++++++|.+++..+.|++++++.+ ...+++++.+|+.+.
T Consensus 108 ~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG----l~~~I~li~GdA~e~ 182 (278)
T PLN02476 108 QLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG----VSHKVNVKHGLAAES 182 (278)
T ss_pred HHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHH
Confidence 33444443 3457799999999999999999988778899999999999999999999988 567999999998775
Q ss_pred c
Q psy8023 85 Y 85 (88)
Q Consensus 85 ~ 85 (88)
+
T Consensus 183 L 183 (278)
T PLN02476 183 L 183 (278)
T ss_pred H
Confidence 4
No 57
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.37 E-value=3.9e-12 Score=82.38 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=55.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
..++.+|||+|||+|.+++.+++.. .+|+++|+++.+++.|++|+..++ ..+++++.+|+.+.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~d~~~~ 352 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAGTLETV 352 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeCCHHHH
Confidence 3466799999999999999999874 379999999999999999999887 57899999998653
No 58
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.37 E-value=7.7e-12 Score=72.05 Aligned_cols=68 Identities=25% Similarity=0.374 Sum_probs=54.8
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++.+. ..++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. ..+++++.+|+.+
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~ 70 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALK 70 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhc
Confidence 34445444 456779999999999999999987 34799999999999999998754 2478888888875
No 59
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3.7e-12 Score=82.49 Aligned_cols=73 Identities=29% Similarity=0.335 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
+....+++. ..++.++||+.||.|.+++.+++.. .+|+|+|+++++++.|++|++.|+ ..|++|..+|++
T Consensus 282 ~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~f~~~~ae 351 (432)
T COG2265 282 YETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANG-----IDNVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEeCCHH
Confidence 344444444 3466799999999999999999764 369999999999999999999998 777999999988
Q ss_pred ccc
Q psy8023 83 IQY 85 (88)
Q Consensus 83 ~~~ 85 (88)
+..
T Consensus 352 ~~~ 354 (432)
T COG2265 352 EFT 354 (432)
T ss_pred HHh
Confidence 754
No 60
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.34 E-value=1.3e-11 Score=76.57 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=61.7
Q ss_pred CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE 80 (88)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 80 (88)
+|..++++.+. ..++..++|.+||.|+.+..+++..+++++|+|+|.++.+++.+++++.. . .+++++++|
T Consensus 6 Vll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~------~ri~~i~~~ 76 (296)
T PRK00050 6 VLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F------GRFTLVHGN 76 (296)
T ss_pred ccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C------CcEEEEeCC
Confidence 46777888876 56778999999999999999999986678999999999999999988754 2 467788777
Q ss_pred ccc
Q psy8023 81 GDI 83 (88)
Q Consensus 81 ~~~ 83 (88)
..+
T Consensus 77 f~~ 79 (296)
T PRK00050 77 FSN 79 (296)
T ss_pred HHH
Confidence 554
No 61
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.34 E-value=8e-12 Score=79.31 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=58.1
Q ss_pred HHHHHHhhcCC-CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 5 RALELLKDNLK-PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 5 ~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++..+..... .+.++||+|||+|.+++.+++.. . +|+++|+++++++.+++|++.++ ..+++++.+|+.+
T Consensus 185 ~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~-~--~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~~~~d~~~ 256 (353)
T TIGR02143 185 KMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF-R--RVLATEIAKPSVNAAQYNIAANN-----IDNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC-C--EEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEEcCHHH
Confidence 34444444332 23479999999999999999875 3 79999999999999999999887 5679999999876
Q ss_pred cc
Q psy8023 84 QY 85 (88)
Q Consensus 84 ~~ 85 (88)
.+
T Consensus 257 ~~ 258 (353)
T TIGR02143 257 FT 258 (353)
T ss_pred HH
Confidence 43
No 62
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.34 E-value=1.4e-11 Score=75.06 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=49.1
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
+.+|||+|||+|.+++.+++.. +..+++++|+|+.+++.+++|+..++ ++++++|..+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~--------~~~~~~D~~~~ 145 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG--------GTVHEGDLYDA 145 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--------CEEEEeechhh
Confidence 4589999999999999999875 56789999999999999999998765 25666666543
No 63
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.33 E-value=1.4e-11 Score=72.84 Aligned_cols=64 Identities=19% Similarity=-0.011 Sum_probs=53.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
.++.+|||+|||+|.+++.++... ..+|+++|+++.+++.+++|++.++ ..+++++++|+.+.+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~-----~~~v~~~~~D~~~~l 115 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLK-----AGNARVVNTNALSFL 115 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEchHHHHH
Confidence 356799999999999998765553 3589999999999999999999887 457999999987644
No 64
>PRK04266 fibrillarin; Provisional
Probab=99.33 E-value=2.5e-11 Score=72.95 Aligned_cols=62 Identities=27% Similarity=0.373 Sum_probs=51.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++.+|||+|||+|.++..+++..+ .++|+++|+++.+++.+.++.+.. .++.++.+|+.+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i~~D~~~ 131 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-------KNIIPILADARK 131 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-------CCcEEEECCCCC
Confidence 56888999999999999999999874 678999999999999887776542 356777777653
No 65
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.33 E-value=2.2e-11 Score=74.62 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=57.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++++ ..+++++.+|+..
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~ 133 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-----VLNVAVTNFDGRV 133 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEecCCHHH
Confidence 4678899999999999999999987666799999999999999999999887 4678899888754
No 66
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.33 E-value=1.3e-11 Score=76.66 Aligned_cols=63 Identities=30% Similarity=0.425 Sum_probs=54.5
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++..++ ...+++++.+|+.+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~----~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSP----LASKLEVIEGDALK 96 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcC----CCCcEEEEECCHhh
Confidence 4577899999999999999998873 369999999999999999987655 35689999999875
No 67
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=1.3e-11 Score=75.13 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=41.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
.++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.++++.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~ 75 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL 75 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC
Confidence 567899999999999999999886 6789999999999999998864
No 68
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.33 E-value=1.9e-11 Score=71.99 Aligned_cols=56 Identities=21% Similarity=0.183 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
.+++.+. ..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~ 76 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKAREN 76 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhC
Confidence 3444443 334579999999999999999985 4589999999999999998887655
No 69
>PRK04457 spermidine synthase; Provisional
Probab=99.32 E-value=1.9e-11 Score=74.90 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=55.9
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
.+++.+|||+|||+|.++..+++.. |..+++++|+++.+++.|++++...+ ...+++++.+|+.+.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEY 129 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHH
Confidence 3456789999999999999999886 77899999999999999999987543 246899999998653
No 70
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.32 E-value=2e-11 Score=78.11 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=56.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+||+|||+|.++..++... |+..++|+|+++.++..+.+++..++ ..++.++.+|+..
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~ 183 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARL 183 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHH
Confidence 346799999999999999999996 78899999999999999999998877 6789999999864
No 71
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.2e-11 Score=75.31 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=51.9
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+.+|+|+|||.|.+++.+++.. |..+++.+|++..+++.|++|+..|+ ..+.++..+|..+
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~ 219 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYE 219 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEecccc
Confidence 34599999999999999999996 68899999999999999999999987 3333555555544
No 72
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=3e-11 Score=78.60 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=57.9
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++++++ ..+++++++|+.+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~ 312 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-----LTNIETKALDARK 312 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCCccc
Confidence 4567899999999999999999987667899999999999999999999887 4569999999865
No 73
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.31 E-value=1.3e-11 Score=78.51 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=59.0
Q ss_pred HHHHHHHhhcCC-CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 4 ARALELLKDNLK-PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 4 ~~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
+.+++.+..... .+.++||++||+|.+++.+++.. . +|+++|+++.+++.+++|+..++ ..+++++.+|+.
T Consensus 193 e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~-~--~v~~vE~~~~ai~~a~~N~~~~~-----~~~v~~~~~d~~ 264 (362)
T PRK05031 193 EKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF-R--RVLATEISKPSVAAAQYNIAANG-----IDNVQIIRMSAE 264 (362)
T ss_pred HHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC-C--EEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEECCHH
Confidence 344455444333 23579999999999999998875 3 79999999999999999999887 568999999987
Q ss_pred ccc
Q psy8023 83 IQY 85 (88)
Q Consensus 83 ~~~ 85 (88)
+.+
T Consensus 265 ~~l 267 (362)
T PRK05031 265 EFT 267 (362)
T ss_pred HHH
Confidence 643
No 74
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.31 E-value=2e-11 Score=75.07 Aligned_cols=59 Identities=27% Similarity=0.367 Sum_probs=50.3
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++.. .+++++++|+.+
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~~ 98 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAE--------DNLTIIEGDALK 98 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhcc--------CceEEEEChhhc
Confidence 4577899999999999999999984 3 799999999999999886532 468899999775
No 75
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.31 E-value=2e-11 Score=74.33 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=39.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
.++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.+++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE 71 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh
Confidence 467899999999999999999986 67799999999999999976
No 76
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=3.4e-11 Score=73.78 Aligned_cols=64 Identities=31% Similarity=0.407 Sum_probs=54.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
.++.+|||+|||+|.++..++... +..+++++|+++.+++.++++.. +. ...+++++.+|..+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~-~~----~~~~i~~~~~d~~~~ 170 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK-HG----LGARVEFLQGDWFEP 170 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH-hC----CCCcEEEEEccccCc
Confidence 456799999999999999999986 67899999999999999999988 22 245788888887654
No 77
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.30 E-value=3.6e-11 Score=74.89 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=56.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..+..+|||+|||+|.+++.+++.. |+.+++++|. +.+++.+++++...+ ..++++++.+|..+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~g----l~~rv~~~~~d~~~ 210 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIYK 210 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCC----ccceEEEEecCccC
Confidence 3566799999999999999999997 7789999998 789999999998877 56789999999874
No 78
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.30 E-value=4.9e-11 Score=74.72 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=48.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++.+..........+++|..+|+.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 5679999999999999999985 458999999999999999998754200001245677777654
No 79
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.30 E-value=3.2e-11 Score=71.28 Aligned_cols=72 Identities=25% Similarity=0.339 Sum_probs=54.8
Q ss_pred HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
.+.+.+.++..|+|+.||.|.+++.+++.. +..+|+++|++|.+++.++++++.|+ ...++..+++|+.+..
T Consensus 94 Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNk----v~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 94 RIANLVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNK----VENRIEVINGDAREFL 165 (200)
T ss_dssp HHHTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG--
T ss_pred HHHhcCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcC----CCCeEEEEcCCHHHhc
Confidence 344456789999999999999999999863 56789999999999999999999998 6678999999988754
No 80
>KOG2904|consensus
Probab=99.30 E-value=2.9e-11 Score=73.95 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=52.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeC
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTG 79 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (88)
++..++|+|||+|.+++.+++.+ ++++++++|.|+.++..|.+|..++. ..+++.+++-
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~----l~g~i~v~~~ 206 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKLAKENAQRLK----LSGRIEVIHN 206 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHHHHHHHHHHh----hcCceEEEec
Confidence 34579999999999999999998 58999999999999999999999988 6677777744
No 81
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4e-11 Score=72.50 Aligned_cols=68 Identities=29% Similarity=0.439 Sum_probs=62.0
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
+.++++|+|.|+|+|.++..++...++.++|+..|+.++..+.|++|++..+ ..+++++..+|+.+..
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~----l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG----LGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc----cccceEEEeccccccc
Confidence 6899999999999999999999998899999999999999999999999977 5556999999988753
No 82
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=5.9e-11 Score=77.32 Aligned_cols=65 Identities=25% Similarity=0.374 Sum_probs=57.5
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++++.+ ..+++++++|+.+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-----~~~v~~~~~Da~~ 312 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-----ITIIETIEGDARS 312 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-----CCeEEEEeCcccc
Confidence 4577899999999999999999887666799999999999999999999887 4578999999865
No 83
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.29 E-value=3.6e-11 Score=73.68 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=50.6
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++.+|||+|||+|..+..++... +.+|+++|+++.+++.++++... ..++.+..+|+.+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~ 110 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILK 110 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCccc
Confidence 4678899999999999999888764 56899999999999999997654 2467888888654
No 84
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.29 E-value=1.8e-11 Score=76.83 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=50.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++.+|||+|||+|.++..+++. +.+|+|+|.++.+++.|+++....+ ...+++++++|+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~~~~~dae~ 191 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDP----VTSTIEYLCTTAEK 191 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC----cccceeEEecCHHH
Confidence 4569999999999999988863 5689999999999999998876544 23578888888654
No 85
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=4.3e-11 Score=77.75 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=58.3
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||.|..+..+++..++.++++++|+++.+++.+++++++++ ..+++++++|+.+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-----~~~v~~~~~D~~~ 314 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-----LKSIKILAADSRN 314 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCeEEEEeCChhh
Confidence 4578899999999999999999987667899999999999999999999987 5679999999875
No 86
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.29 E-value=4.3e-11 Score=74.10 Aligned_cols=59 Identities=24% Similarity=0.224 Sum_probs=49.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ . ++++...|+..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~ 178 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINS 178 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhc
Confidence 4459999999999999999885 4589999999999999999988766 2 57777776643
No 87
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.28 E-value=5.9e-11 Score=69.69 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
|..+++.+. ..++.++||+|||.|..+.+++++ +..|+++|+|+.+++.+++.....+ -.++....|+.
T Consensus 19 hs~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl~ 87 (192)
T PF03848_consen 19 HSEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADLN 87 (192)
T ss_dssp -HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGC
T ss_pred cHHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecch
Confidence 344444443 335669999999999999999997 4579999999999999999887765 23777777765
Q ss_pred c
Q psy8023 83 I 83 (88)
Q Consensus 83 ~ 83 (88)
+
T Consensus 88 ~ 88 (192)
T PF03848_consen 88 D 88 (192)
T ss_dssp C
T ss_pred h
Confidence 4
No 88
>KOG1540|consensus
Probab=99.28 E-value=7.3e-11 Score=71.57 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcC--CCCCeEEEecCCCChHHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceE
Q psy8023 3 NARALELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSN-----GEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFE 75 (88)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~l~~~~~~~-----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~ 75 (88)
|+.+........ .+++++||++||||.++..+.+..+.. .+|+..|+|++|+..++++..+.+ .....++.
T Consensus 85 HRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~--l~~~~~~~ 162 (296)
T KOG1540|consen 85 HRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP--LKASSRVE 162 (296)
T ss_pred hHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC--CCcCCceE
Confidence 344444444443 456799999999999999999987543 799999999999999999986644 01234599
Q ss_pred EeeCCccc
Q psy8023 76 PQTGEGDI 83 (88)
Q Consensus 76 ~~~~d~~~ 83 (88)
|+++|+++
T Consensus 163 w~~~dAE~ 170 (296)
T KOG1540|consen 163 WVEGDAED 170 (296)
T ss_pred EEeCCccc
Confidence 99999875
No 89
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.28 E-value=4.2e-11 Score=71.47 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=53.0
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++|||+|||+|..+..+++.. ++.+++++|+|+.+++.+++++...+ ...+++++..|..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~g----l~~~i~~~~~d~~~ 61 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALG----LQGRIRIFYRDSAK 61 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEeccccc
Confidence 379999999999999999886 56789999999999999999998766 55688888888754
No 90
>PRK08317 hypothetical protein; Provisional
Probab=99.28 E-value=8.3e-11 Score=70.25 Aligned_cols=64 Identities=27% Similarity=0.424 Sum_probs=52.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++.+|||+|||+|.++..++...++.++++++|+++.+++.++++... ...++++..+|+.+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~d~~~ 80 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVEFVRGDADG 80 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceEEEeccccc
Confidence 46778999999999999999999876678999999999999999988332 13567777777653
No 91
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.28 E-value=8.5e-11 Score=70.36 Aligned_cols=65 Identities=28% Similarity=0.476 Sum_probs=53.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.+|||+|||+|..+..++...++..+++++|+++.+++.+++++..++ ...++.+..+|+.+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~ 114 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVEFVQGDAEA 114 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeEEEeccccc
Confidence 356799999999999999999987436899999999999999999987654 34567888887654
No 92
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.28 E-value=3e-11 Score=77.24 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=53.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
++.+|||+|||+|.+++.++.. ..+++++|+++.+++.|++|.+.++ ..+++++.+|+.+.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~-----~~~~~~~~~d~~~~ 293 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLG-----LDNLSFAALDSAKF 293 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHH
Confidence 4579999999999999999864 3479999999999999999999887 45899999998653
No 93
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.27 E-value=3.1e-11 Score=70.50 Aligned_cols=65 Identities=25% Similarity=0.385 Sum_probs=51.8
Q ss_pred HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023 8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (88)
+.+.++++++.+|||+|||.|.+...+.+. ++.+.+|+|++++.+..+.++ + +.++++|+.++++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G--------v~Viq~Dld~gL~ 69 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G--------VSVIQGDLDEGLA 69 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C--------CCEEECCHHHhHh
Confidence 455667889999999999999999888886 478999999999888777653 3 4577777776553
No 94
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=8e-11 Score=76.47 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=58.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||+|+.+..++...++.++|+++|+++.+++.+++++++.+ ..++++..+|+.+
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-----~~~v~~~~~Da~~ 299 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-----LSSIEIKIADAER 299 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhh
Confidence 5678899999999999999999988677899999999999999999999887 4568899998764
No 95
>KOG2187|consensus
Probab=99.27 E-value=5.5e-12 Score=82.14 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=62.1
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
+..+-+++. ++.++.++|++||||.+++.+++... +|+|+|+++++++.|++|...|+ ..|.+|+++-++
T Consensus 372 ys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~gqaE 441 (534)
T KOG2187|consen 372 YSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQING-----ISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHhC--CCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcC-----ccceeeeecchh
Confidence 444445554 57788999999999999999999864 49999999999999999999998 889999999766
Q ss_pred ccc
Q psy8023 83 IQY 85 (88)
Q Consensus 83 ~~~ 85 (88)
+.+
T Consensus 442 ~~~ 444 (534)
T KOG2187|consen 442 DLF 444 (534)
T ss_pred hcc
Confidence 654
No 96
>PRK14968 putative methyltransferase; Provisional
Probab=99.27 E-value=9.5e-11 Score=68.01 Aligned_cols=63 Identities=24% Similarity=0.317 Sum_probs=51.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcc-eEEeeCCcccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK-FEPQTGEGDIQ 84 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~ 84 (88)
.++.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++..++ ...+ +.++.+|..+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~~d~~~~ 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNN----IRNNGVEVIRSDLFEP 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcC----CCCcceEEEecccccc
Confidence 56779999999999999999887 4589999999999999999998766 2112 77888876654
No 97
>KOG1271|consensus
Probab=99.27 E-value=3e-11 Score=70.18 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=53.4
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
+|||+|||+|.+...+++.- -....+|+|+|+.+++.|+...++.+ ....++|.+.|++++
T Consensus 70 ~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~----~~n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDG----FSNEIRFQQLDITDP 130 (227)
T ss_pred ceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcC----CCcceeEEEeeccCC
Confidence 99999999999999998873 45569999999999999999998887 455699999999873
No 98
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.26 E-value=8.7e-11 Score=70.24 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=49.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+ ...++++..+|.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAG----LAGNITFEVGDL 121 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccCcEEEEcCc
Confidence 456799999999999999998763 469999999999999999987765 235778887774
No 99
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.26 E-value=1.4e-11 Score=78.17 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCC-CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 5 RALELLKDNLKP-GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 5 ~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+++.+...+.. +..+||+.||.|.+++.++.... +|+|+|+++++++.|++|.+.++ ..+++|+.+++.+
T Consensus 184 ~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~-----i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 184 KLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNG-----IDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--SHH
T ss_pred HHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcC-----CCcceEEEeeccc
Confidence 344444444432 23799999999999999999753 69999999999999999999998 7899999887653
No 100
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.26 E-value=6.2e-11 Score=77.56 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=51.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++.+|||+|||+|..+..+++.. +.+++|+|+|+.+++.|+++.... ..++++..+|+.+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~ 325 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTK 325 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCccc
Confidence 4567899999999999999998875 568999999999999999886532 3578888888764
No 101
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.26 E-value=5.3e-11 Score=72.75 Aligned_cols=60 Identities=30% Similarity=0.336 Sum_probs=51.4
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. ..+++++++|+.+
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~~ 86 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDALK 86 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEecccc
Confidence 4567899999999999999999873 3799999999999999988754 2478999999875
No 102
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.26 E-value=5.9e-11 Score=69.65 Aligned_cols=64 Identities=19% Similarity=-0.001 Sum_probs=55.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
-++.++||++||+|.+++.++.+.. .+++++|.++.+++.+++|++.++ ...+++++.+|+.+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~----~~~~~~~~~~D~~~~ 111 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLK----SGEQAEVVRNSALRA 111 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhC----CcccEEEEehhHHHH
Confidence 3578999999999999999999852 489999999999999999999887 345789999998653
No 103
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.26 E-value=2.7e-11 Score=71.91 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=50.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (88)
....+|.|+|||.|..+..+++++ |..+++|+|-|+.|++.|+++.. +++|..+|+.++-|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp----------~~~f~~aDl~~w~p 89 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLP----------DATFEEADLRTWKP 89 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCC----------CCceecccHhhcCC
Confidence 345689999999999999999999 88999999999999999977644 35577777665443
No 104
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.25 E-value=9.2e-11 Score=74.24 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=49.2
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..+|||+|||+|.++..+++.. +..+++++|+++.+++.++++++.++ . ..+++.+|...
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~----l--~~~~~~~D~~~ 256 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANG----L--EGEVFASNVFS 256 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----C--CCEEEEccccc
Confidence 4589999999999999999985 66789999999999999999998876 1 23555555543
No 105
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.25 E-value=1.2e-10 Score=67.66 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=50.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.+|||+|||+|.++..+++.. + +++++|+++.+++.++++...++ .+++++.+|..+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~ 77 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFK 77 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccc
Confidence 455789999999999999999874 3 89999999999999999998765 257777777654
No 106
>PLN02672 methionine S-methyltransferase
Probab=99.25 E-value=3.5e-11 Score=84.51 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=56.2
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCC-----------CCCcceEEeeCCccccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL-----------LPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~d~~~~~ 85 (88)
+.+|+|+|||+|.+++.+++.. +..+++++|+|+.+++.|++|++.++... ....+++++++|..+.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4689999999999999999986 56799999999999999999998764110 12357999999987654
No 107
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.24 E-value=9e-11 Score=71.36 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=64.2
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
.++..+.. ..+.++|||+|+++|+.++.++...+++++++.+|.+++..+.|+++++..+ ...+++++.+|+.+.
T Consensus 69 ~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag----~~~~I~~~~G~a~e~ 143 (247)
T PLN02589 69 QFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG----VAHKIDFREGPALPV 143 (247)
T ss_pred HHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEeccHHHH
Confidence 34444443 3355699999999999999999988778999999999999999999999988 678999999998775
Q ss_pred c
Q psy8023 85 Y 85 (88)
Q Consensus 85 ~ 85 (88)
+
T Consensus 144 L 144 (247)
T PLN02589 144 L 144 (247)
T ss_pred H
Confidence 4
No 108
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.24 E-value=2.9e-11 Score=69.33 Aligned_cols=59 Identities=25% Similarity=0.171 Sum_probs=50.3
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
.|+|++||.|+.++.+++.+ . +|+++|+++..++.++.|.+-++ ..++++++++|..+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~--~Viaidid~~~~~~a~hNa~vYG----v~~~I~~i~gD~~~~ 60 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-D--RVIAIDIDPERLECAKHNAEVYG----VADNIDFICGDFFEL 60 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHH
T ss_pred EEEEeccCcCHHHHHHHHhC-C--eEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCCHHHH
Confidence 68999999999999999986 3 69999999999999999999998 778999999998764
No 109
>PRK05785 hypothetical protein; Provisional
Probab=99.24 E-value=6.9e-11 Score=71.04 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=42.1
Q ss_pred HHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 7 ~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
+..+.....++.+|||+|||+|..+..+++.. +.+++|+|+|++|++.+++.
T Consensus 42 ~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 42 VKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred HHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc
Confidence 34443333457899999999999999998875 46899999999999999875
No 110
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.23 E-value=1.1e-10 Score=75.09 Aligned_cols=65 Identities=17% Similarity=0.062 Sum_probs=54.4
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCC-cceEEeeCCcccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPN-IKFEPQTGEGDIQ 84 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~d~~~~ 84 (88)
..++++|||+|||+|.+++..+.. ...+|+++|+|+.+++.+++|+..++ .. .+++++++|+.+.
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ng----l~~~~v~~i~~D~~~~ 283 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNK----LDLSKAEFVRDDVFKL 283 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcC----CCCCcEEEEEccHHHH
Confidence 346789999999999998876643 34589999999999999999999987 32 4799999998764
No 111
>PLN03075 nicotianamine synthase; Provisional
Probab=99.22 E-value=2.1e-10 Score=71.19 Aligned_cols=65 Identities=12% Similarity=0.027 Sum_probs=52.9
Q ss_pred CCCeEEEecCCCC-hHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh-cCCCCCCCcceEEeeCCcccc
Q psy8023 16 PGAKVLDIGSGSG-YLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ-GNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 16 ~~~~vlD~g~G~G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~~ 84 (88)
++++|+|+|||.| ..++.++....++++++++|+++++++.|++.++. .+ ...+++|..+|+.+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~ 189 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDV 189 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhc
Confidence 6689999999966 44555665555888999999999999999999965 44 457899999998764
No 112
>PRK14967 putative methyltransferase; Provisional
Probab=99.22 E-value=9.8e-11 Score=70.13 Aligned_cols=62 Identities=29% Similarity=0.401 Sum_probs=51.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++.+|||+|||+|.++..++... ..+++++|+++.+++.++++...++ . +++++.+|..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~-----~-~~~~~~~d~~~ 95 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAG-----V-DVDVRRGDWAR 95 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhC-----C-eeEEEECchhh
Confidence 4567899999999999999988752 3589999999999999999998765 2 47777777754
No 113
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.22 E-value=2e-10 Score=68.57 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=62.6
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEee-CCccc
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQT-GEGDI 83 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~ 83 (88)
.++..+.. ....++|||+|++.|+.++.++...+.+++++.+|.+++..+.|++++++.+ ...+++++. +|+.+
T Consensus 49 ~~L~~L~~-~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag----~~~~i~~~~~gdal~ 123 (219)
T COG4122 49 ALLRLLAR-LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG----VDDRIELLLGGDALD 123 (219)
T ss_pred HHHHHHHH-hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC----CcceEEEEecCcHHH
Confidence 34444443 4567899999999999999999998668999999999999999999999988 666788888 47765
Q ss_pred c
Q psy8023 84 Q 84 (88)
Q Consensus 84 ~ 84 (88)
.
T Consensus 124 ~ 124 (219)
T COG4122 124 V 124 (219)
T ss_pred H
Confidence 3
No 114
>KOG1270|consensus
Probab=99.22 E-value=3.7e-11 Score=72.97 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=48.4
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCC-CCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELL-PNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~~ 83 (88)
+++|||+|||+|.++.++++.- .+|+|+|.++.+++.|++..+....... -.-++++.+.|++.
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~ 154 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG 154 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh
Confidence 5789999999999999999983 4799999999999999999444331110 11246677777654
No 115
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.22 E-value=1.4e-10 Score=70.68 Aligned_cols=60 Identities=27% Similarity=0.350 Sum_probs=50.6
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||+|.++..+++.. + +++++|+++.+++.++++... ..+++++++|+.+
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~~D~~~ 86 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRA-K--KVTAIEIDPRLAEILRKLLSL-------YERLEVIEGDALK 86 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhC-C--cEEEEECCHHHHHHHHHHhCc-------CCcEEEEECchhc
Confidence 3567899999999999999999986 3 599999999999999987643 3478888888765
No 116
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.19 E-value=2.2e-10 Score=73.52 Aligned_cols=47 Identities=34% Similarity=0.450 Sum_probs=42.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 62 (88)
+.++.+|||+|||+|..+..+++.. +.+|+++|+|+++++.++++..
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc
Confidence 4678899999999999999999875 5689999999999999999874
No 117
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.19 E-value=3.8e-11 Score=72.14 Aligned_cols=47 Identities=28% Similarity=0.549 Sum_probs=43.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
++.+|||+|||.|.++..+++. +.+|+|+|+++.+++.|+......+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~g 105 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESG 105 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcc
Confidence 7889999999999999999997 3579999999999999999888766
No 118
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.19 E-value=1.5e-10 Score=79.00 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=55.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCC-cceEEeeCCccccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPN-IKFEPQTGEGDIQY 85 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~d~~~~~ 85 (88)
.++++|||+|||+|.+++.++... ..+|+++|+|+.+++.+++|+..++ .. .+++++++|+.+.+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng----~~~~~v~~i~~D~~~~l 602 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNG----LSGRQHRLIQADCLAWL 602 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhC----CCccceEEEEccHHHHH
Confidence 467899999999999999999862 3479999999999999999999987 33 58999999987643
No 119
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.18 E-value=2.1e-10 Score=72.21 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=52.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||.|||+|.+++..+.. +.+++|+|+++.+++.+++|++.++ ..++++..+|+.+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~~~~D~~~ 241 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYG-----IEDFFVKRGDATK 241 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeEEecchhc
Confidence 567889999999999998886654 4589999999999999999998877 3447888888765
No 120
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.18 E-value=2.8e-10 Score=59.05 Aligned_cols=53 Identities=25% Similarity=0.465 Sum_probs=43.2
Q ss_pred EEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 21 lD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
||+|||+|..+..+++. +..+++++|+++.+++.++++....+ +.+..+|.++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~--------~~~~~~d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG--------VSFRQGDAED 53 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST--------EEEEESBTTS
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC--------chheeehHHh
Confidence 79999999999999998 56789999999999999999887644 4477777654
No 121
>PRK06202 hypothetical protein; Provisional
Probab=99.18 E-value=1.3e-10 Score=69.82 Aligned_cols=49 Identities=33% Similarity=0.443 Sum_probs=40.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLV---GSNGEVTAVELIPEVLQFTHYNIQQ 63 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~ 63 (88)
.++.+|||+|||+|.++..+++.. +++.+++|+|+++.+++.++++...
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 110 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR 110 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc
Confidence 356799999999999999888653 3456899999999999999987653
No 122
>PTZ00146 fibrillarin; Provisional
Probab=99.18 E-value=2.3e-10 Score=70.89 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=48.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++.+|||+|||+|.++..++...++..+|+++|+++.+.+...+..+.. .++.++.+|+..
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-------~NI~~I~~Da~~ 192 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-------PNIVPIIEDARY 192 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCCEEEECCccC
Confidence 568889999999999999999999877789999999998665555544321 245666666643
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=3.5e-10 Score=73.40 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=54.5
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.+++++++++ . +++++++|+.+
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g-----~-~~~~~~~D~~~ 304 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG-----L-KATVIVGDARD 304 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC-----C-CeEEEEcCccc
Confidence 4678899999999999999999986 44799999999999999999999876 2 36788888764
No 124
>PRK06922 hypothetical protein; Provisional
Probab=99.18 E-value=1.6e-10 Score=77.78 Aligned_cols=62 Identities=13% Similarity=0.292 Sum_probs=50.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.+|||+|||+|..+..+++.. ++.+++|+|+|+.+++.|+++....+ .+++++++|+.+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~d 478 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAIN 478 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHh
Confidence 357899999999999999998876 78899999999999999998865433 356677777653
No 125
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.17 E-value=2.7e-10 Score=71.56 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=49.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc-CCCCCCCcceEEee
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG-NPELLPNIKFEPQT 78 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ 78 (88)
++.++||+|||+|.+...++... ++.+++|+|+++.+++.|++++..+ + ...++++..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~----l~~~I~~~~ 172 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPG----LNGAIRLRL 172 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccC----CcCcEEEEE
Confidence 35689999999999888888775 5789999999999999999999998 5 455677653
No 126
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.17 E-value=3.3e-10 Score=67.64 Aligned_cols=66 Identities=18% Similarity=0.024 Sum_probs=48.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCC-------CCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP-------ELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~d~~~ 83 (88)
+++.+|||+|||.|..+..++.+ +.+|+|+|+|+.+++.+.+....... ......++++.++|..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~ 105 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA 105 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence 46679999999999999999985 55799999999999986432211000 00013578899999865
No 127
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.16 E-value=3.1e-10 Score=66.93 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=54.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
+...+||+|||.|.+...+|... |+..++|+|+....+..+.+++...+ ..|+.++++|+...+
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~-----l~Nv~~~~~da~~~l 80 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRG-----LKNVRFLRGDARELL 80 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHT-----TSSEEEEES-CTTHH
T ss_pred CCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhc-----ccceEEEEccHHHHH
Confidence 33489999999999999999997 88999999999999999999998877 899999999988743
No 128
>PRK00811 spermidine synthase; Provisional
Probab=99.15 E-value=3.5e-10 Score=70.01 Aligned_cols=69 Identities=20% Similarity=0.154 Sum_probs=54.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
+++++||++|||.|..+..+++.. +..+|+++|+++.+++.|++++...+.......+++++.+|+.+.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~ 143 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF 143 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH
Confidence 456799999999999999998763 456899999999999999999865431111246788999988653
No 129
>KOG1661|consensus
Probab=99.15 E-value=2e-10 Score=67.90 Aligned_cols=85 Identities=45% Similarity=0.784 Sum_probs=70.8
Q ss_pred cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhhcCC-----CCCCCcceE
Q psy8023 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGE-VTAVELIPEVLQFTHYNIQQGNP-----ELLPNIKFE 75 (88)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 75 (88)
||+.+++.+..++.++..+||+|+|+|+++..++...+.++. ..|+|.-++.++.+++++...-. ......++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 688999999999999999999999999999999987765554 49999999999999999876431 113457889
Q ss_pred EeeCCcccccc
Q psy8023 76 PQTGEGDIQYL 86 (88)
Q Consensus 76 ~~~~d~~~~~~ 86 (88)
++.+|..++++
T Consensus 148 ivvGDgr~g~~ 158 (237)
T KOG1661|consen 148 IVVGDGRKGYA 158 (237)
T ss_pred EEeCCccccCC
Confidence 99999988764
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.15 E-value=6.2e-10 Score=72.23 Aligned_cols=64 Identities=22% Similarity=0.285 Sum_probs=53.0
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
..++.+|||+|||+|..+..+++..+ .++++++|+++.+++.+++++++.+ ...++.+..+|..
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g----~~~~v~~~~~d~~ 299 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLG----LTIKAETKDGDGR 299 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeccccc
Confidence 45788999999999999999999874 6899999999999999999999877 2223444666654
No 131
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.14 E-value=4.6e-12 Score=66.98 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=38.3
Q ss_pred EEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 21 lD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
||+|||+|..+..+.+.. +..+++++|+|+.+++.+++++....
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~ 44 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG 44 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC
Confidence 799999999999999997 78899999999999999999988765
No 132
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.14 E-value=6.8e-10 Score=69.84 Aligned_cols=63 Identities=16% Similarity=0.041 Sum_probs=46.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.+|||+|||+|.++..++... ..+|+|+|.|+.++..++...+..+ ...+++++.+|+.+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~~~l~q~~a~~~~~~----~~~~i~~~~~d~e~ 183 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQLFLCQFEAVRKLLG----NDQRAHLLPLGIEQ 183 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHhcC----CCCCeEEEeCCHHH
Confidence 357899999999999999998874 2369999999998876544333222 13467888877653
No 133
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.13 E-value=5.7e-10 Score=68.62 Aligned_cols=45 Identities=22% Similarity=0.462 Sum_probs=38.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHh
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGS--NGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~ 60 (88)
+..+|||+|||+|.++..+++..+. ..+++|+|+|+.+++.|+++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~ 131 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR 131 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence 4568999999999999999887632 23799999999999999875
No 134
>KOG1541|consensus
Probab=99.13 E-value=2.6e-10 Score=68.04 Aligned_cols=73 Identities=25% Similarity=0.242 Sum_probs=52.7
Q ss_pred cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
|..+.++.+.-.-+...-|||+|||+|..+..+... +-..+|+|+|+.|++.|.+.--+ -+++.+|.
T Consensus 36 m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~e----------gdlil~DM 102 (270)
T KOG1541|consen 36 MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELE----------GDLILCDM 102 (270)
T ss_pred HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhh----------cCeeeeec
Confidence 345666666622223568999999999998887764 45799999999999999973222 24677777
Q ss_pred cccccc
Q psy8023 82 DIQYLL 87 (88)
Q Consensus 82 ~~~~~~ 87 (88)
-+++||
T Consensus 103 G~Glpf 108 (270)
T KOG1541|consen 103 GEGLPF 108 (270)
T ss_pred CCCCCC
Confidence 777765
No 135
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.12 E-value=7.6e-10 Score=66.18 Aligned_cols=57 Identities=26% Similarity=0.456 Sum_probs=45.7
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++... +++++.+|+.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~d~~ 90 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSE---------NVQFICGDAE 90 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCC---------CCeEEecchh
Confidence 34689999999999999999986 677899999999999999876541 3455555554
No 136
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.12 E-value=5.7e-10 Score=67.72 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=37.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 62 (88)
+..+|||+|||+|..+..++.. ..+++++|+|+.+++.++++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~ 85 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA 85 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC
Confidence 4578999999999998888764 4589999999999999988753
No 137
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.12 E-value=1.1e-09 Score=64.98 Aligned_cols=62 Identities=26% Similarity=0.389 Sum_probs=50.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++.. . ..++++..+|+.+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~-----~~~i~~~~~d~~~ 99 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L-----PLNIEFIQADAEA 99 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c-----CCCceEEecchhc
Confidence 367899999999999999999987433789999999999999998875 2 3456677766654
No 138
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=3.9e-10 Score=71.11 Aligned_cols=68 Identities=24% Similarity=0.329 Sum_probs=59.5
Q ss_pred cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (88)
...+|.+|+|+.+|.|.+++.++....+ +|+++|++|.+++.+++|++.|+ ....+..+++|+.+-.+
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~----v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNK----VEGRVEPILGDAREVAP 252 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcC----ccceeeEEeccHHHhhh
Confidence 4567999999999999999999998533 49999999999999999999998 55669999999987544
No 139
>PHA03411 putative methyltransferase; Provisional
Probab=99.08 E-value=1.4e-09 Score=66.98 Aligned_cols=57 Identities=26% Similarity=0.285 Sum_probs=45.5
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+..+|||+|||+|.++..++... +..+++++|+++.+++.++++.. +++++++|+.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~e 120 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLP----------EAEWITSDVFE 120 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCc----------CCEEEECchhh
Confidence 45689999999999999888874 35689999999999999988632 35566666654
No 140
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.08 E-value=7.2e-10 Score=70.12 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=47.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.+|||+|||+|.++..+++.. +..+++++|.++++++.++++... .+++++.+|+.+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~ 171 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAED 171 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHh
Confidence 356799999999999999998876 457899999999999999987542 235566666543
No 141
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.2e-09 Score=66.72 Aligned_cols=60 Identities=25% Similarity=0.361 Sum_probs=52.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++..|||+|+|.|.++..+++... +|+++|+++.+++..++.... ..+++++.+|+.+
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~DaLk 87 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------YDNLTVINGDALK 87 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------ccceEEEeCchhc
Confidence 45678999999999999999999853 599999999999999998773 4689999999886
No 142
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.08 E-value=9.9e-10 Score=65.80 Aligned_cols=68 Identities=19% Similarity=0.049 Sum_probs=49.0
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCC-------CCCCCcceEEeeCCcccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP-------ELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~d~~~~ 84 (88)
.+++.+|||+|||.|..+..++.+ +.+|+|+|+|+.+++.+.+....... ......++++.++|+.+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence 346679999999999999999985 56899999999999987432111000 000245788999988753
No 143
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.07 E-value=1.3e-09 Score=68.30 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=35.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
.++++|||+|||+|.++..++... ..+|+|+|.|+.++..++.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~ 162 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEA 162 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH
Confidence 467899999999999998888763 2479999999999876543
No 144
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.06 E-value=1.3e-09 Score=64.07 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=39.7
Q ss_pred HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
.+...++++.+|||+|||+|.++..+++.. ..+++++|+++++++.+++
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA 54 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH
Confidence 344445677899999999999998887754 4578999999999988864
No 145
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.06 E-value=7.9e-10 Score=65.81 Aligned_cols=38 Identities=32% Similarity=0.685 Sum_probs=34.3
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
+.++.+|||+|||+|.++..+++..++.++|+++|+++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 46788999999999999999999876678999999998
No 146
>KOG1499|consensus
Probab=99.03 E-value=1.4e-09 Score=68.41 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=54.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
-+++.|||+|||+|.++.+.++.. -.+|+++|.|. +.+.|++.+..|+ ....++++.+.+++
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~-ia~~a~~iv~~N~----~~~ii~vi~gkvEd 120 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASS-IADFARKIVKDNG----LEDVITVIKGKVED 120 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechH-HHHHHHHHHHhcC----ccceEEEeecceEE
Confidence 478899999999999999999986 34899999998 5599999999998 66678999988776
No 147
>PRK01581 speE spermidine synthase; Validated
Probab=99.03 E-value=2.3e-09 Score=68.26 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh--hhcCCCCCCCcceEEeeCC
Q psy8023 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI--QQGNPELLPNIKFEPQTGE 80 (88)
Q Consensus 3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d 80 (88)
|+.+++......+...+||++|||.|..+..+++. ++..+++++|+++++++.|++.. ...++......+++++.+|
T Consensus 137 HE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D 215 (374)
T PRK01581 137 HEALVHPIMSKVIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD 215 (374)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc
Confidence 34444444333456679999999999988888876 35679999999999999999732 2111111235688999999
Q ss_pred ccccc
Q psy8023 81 GDIQY 85 (88)
Q Consensus 81 ~~~~~ 85 (88)
+.+.+
T Consensus 216 a~~fL 220 (374)
T PRK01581 216 AKEFL 220 (374)
T ss_pred HHHHH
Confidence 87643
No 148
>KOG3191|consensus
Probab=99.02 E-value=2.2e-09 Score=62.37 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=54.8
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
...++|+|||+|..+.++++..+++..+.++|++|++++...+..+.|+ .+++.++.|...++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l 106 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGL 106 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhh
Confidence 5679999999999999999999888999999999999999999998876 44777777766554
No 149
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.02 E-value=5e-09 Score=61.06 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=49.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCc--------eEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNG--------EVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~--------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++..++|-.||+|.+.+..+....... +++|.|+++.+++.+++|++..+ ....+.+...|+.+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag----~~~~i~~~~~D~~~ 99 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG----VEDYIDFIQWDARE 99 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-----CGGEEEEE--GGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc----cCCceEEEecchhh
Confidence 46778999999999999999877753322 38999999999999999999887 56788999988775
No 150
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.02 E-value=1.9e-09 Score=69.22 Aligned_cols=71 Identities=23% Similarity=0.163 Sum_probs=58.8
Q ss_pred HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
++..... +++|||+.|-||.++++.+.... .+|+++|+|..+++.|++|++.|+ ....++.|+++|+.+.+
T Consensus 211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg---~~~~~~~~i~~Dvf~~l 281 (393)
T COG1092 211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNG---LDGDRHRFIVGDVFKWL 281 (393)
T ss_pred HHhhhcc-CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcC---CCccceeeehhhHHHHH
Confidence 3333344 89999999999999999988642 389999999999999999999998 22467899999998754
No 151
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.01 E-value=1.3e-09 Score=64.01 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=46.4
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (88)
-.+++|+|||.|.++..++.+- .+++++|+++.+++.|+++... ..+++|+++|+.+..|
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P 103 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWP 103 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT---
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCC
Confidence 3589999999999999999874 3799999999999999999876 3589999999887665
No 152
>PHA03412 putative methyltransferase; Provisional
Probab=99.00 E-value=3.5e-09 Score=63.96 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=39.7
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhh
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG--SNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
.+.+|||+|||+|.+++.+++... +..+++++|+++.+++.|+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~ 96 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV 96 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc
Confidence 467999999999999999988642 3568999999999999999875
No 153
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.99 E-value=4e-09 Score=58.97 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=46.8
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
.++|+|||.|..+..+++.. +..+++++|.++.+.+.++++++.++ ..++++++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeee
Confidence 48999999999999998885 66799999999999999999998876 33455554443
No 154
>KOG2915|consensus
Probab=98.98 E-value=8.5e-09 Score=63.22 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=65.0
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++..+. +.|+.+|+|-|+|.|.++-++++..+|.++++..|+.+...+.|.+.++.++ ..+++++...|+-.
T Consensus 96 ~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg----i~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 96 MILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG----IGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC----CCcceEEEEeeccc
Confidence 3444554 7899999999999999999999999999999999999999999999999988 78899999888754
No 155
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.98 E-value=3.1e-09 Score=65.27 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=36.4
Q ss_pred CCCeEEEecCCCCh----HHHHHHHHhCC----CceEEEEeCCHHHHHHHHHhh
Q psy8023 16 PGAKVLDIGSGSGY----LTACFADLVGS----NGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 16 ~~~~vlD~g~G~G~----~~~~l~~~~~~----~~~v~~~D~~~~~~~~a~~~~ 61 (88)
++.+|||+|||+|. +++.+++..++ +.+++|+|+|+.+++.|++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 45699999999997 44555555432 468999999999999999875
No 156
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.97 E-value=2.3e-09 Score=62.72 Aligned_cols=40 Identities=40% Similarity=0.676 Sum_probs=35.0
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHH
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~ 53 (88)
++++.+|||+|||+|.++..++....+.++++++|+++.+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 4678899999999999999999887566789999999853
No 157
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.96 E-value=3.3e-09 Score=63.84 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=56.5
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
..+||+|||.|.+.+.+|+.. |+..++|+|+....+..+.+.+.+.+ ..|+.+++.|+.+.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~-----l~Nlri~~~DA~~~l 111 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELG-----LKNLRLLCGDAVEVL 111 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcC-----CCcEEEEcCCHHHHH
Confidence 589999999999999999996 88899999999999999999999877 559999999998754
No 158
>PLN02366 spermidine synthase
Probab=98.96 E-value=1.3e-08 Score=63.78 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++||++|||.|..+..+++. ++..+++.+|+++.+++.+++.+...+. .....+++++.+|+.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~ 156 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVE 156 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHH
Confidence 56789999999999999999876 3456899999999999999999865321 1235689999999754
No 159
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.96 E-value=3.9e-09 Score=61.74 Aligned_cols=75 Identities=21% Similarity=0.167 Sum_probs=55.9
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
.+...+....-++.++||+.||+|.+++..+.+. -.+|+.+|.++.+++..++|++..+ ...+++++..|+...
T Consensus 31 alFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~----~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 31 ALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLG----LEDKIRVIKGDAFKF 104 (183)
T ss_dssp HHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESSHHHH
T ss_pred HHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhC----CCcceeeeccCHHHH
Confidence 3445555331468899999999999999888875 3489999999999999999999877 455789999997654
Q ss_pred c
Q psy8023 85 Y 85 (88)
Q Consensus 85 ~ 85 (88)
+
T Consensus 105 l 105 (183)
T PF03602_consen 105 L 105 (183)
T ss_dssp H
T ss_pred H
Confidence 3
No 160
>PRK03612 spermidine synthase; Provisional
Probab=98.95 E-value=9.5e-09 Score=68.30 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=52.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh--hhcCCCCCCCcceEEeeCCcccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI--QQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
+++++|||+|||+|..+..++++ ++..+++++|+++++++.++++. ...+.......+++++.+|+.+.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~ 366 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW 366 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH
Confidence 45679999999999999998875 23379999999999999999953 22111111246889999998764
No 161
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.94 E-value=8.6e-09 Score=61.27 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=52.5
Q ss_pred EEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023 20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 20 vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (88)
|+|+||-.|++++.+.+.. .-.+++++|+++..++.|++++..++ ...++++..+|..+.++
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~----l~~~i~~rlgdGL~~l~ 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYG----LEDRIEVRLGDGLEVLK 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcC----CcccEEEEECCcccccC
Confidence 6899999999999999984 56689999999999999999999988 77899999999887653
No 162
>KOG3420|consensus
Probab=98.94 E-value=9e-10 Score=62.02 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=53.8
Q ss_pred HHHHHhhcC--CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 6 ALELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 6 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++..+.+-. -+++.++|+|||+|-+++..+.. .+..++|+|+++++++.+++|..... -++++++.|+.+
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfE------vqidlLqcdild 107 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFE------VQIDLLQCDILD 107 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhh------hhhheeeeeccc
Confidence 344444332 36789999999999998655543 45689999999999999999998754 456888888776
Q ss_pred c
Q psy8023 84 Q 84 (88)
Q Consensus 84 ~ 84 (88)
.
T Consensus 108 l 108 (185)
T KOG3420|consen 108 L 108 (185)
T ss_pred h
Confidence 4
No 163
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.93 E-value=7.4e-09 Score=67.92 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=46.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++... ...+++++++|+.+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~-------~~~~i~~~~~d~~~ 94 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING-------HYKNVKFMCADVTS 94 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc-------cCCceEEEEecccc
Confidence 56799999999999999999874 379999999999988765322 13578888888753
No 164
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.93 E-value=9.5e-09 Score=53.33 Aligned_cols=59 Identities=27% Similarity=0.433 Sum_probs=46.8
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
+++|+|||.|..+..++. .+..+++++|+++..++.+++...... ..++++...|..+.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 59 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEEL 59 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhh
Confidence 489999999999999888 256799999999999999986444333 46677888777654
No 165
>KOG0820|consensus
Probab=98.93 E-value=1.2e-08 Score=62.54 Aligned_cols=63 Identities=29% Similarity=0.342 Sum_probs=55.8
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.+...|||+|.|||.++..+.+.. .+|+++|+++.++....+++.... .....+++.+|..+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp----~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTP----KSGKLQVLHGDFLK 118 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCC----ccceeeEEeccccc
Confidence 5677899999999999999999984 369999999999999999998765 56789999999876
No 166
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.92 E-value=5.9e-09 Score=66.98 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=52.4
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.++ ..++++.++|+.+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~Da~~ 118 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKDANA 118 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhhHHH
Confidence 36899999999999999988753 4589999999999999999999887 4567788888754
No 167
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.92 E-value=1.2e-08 Score=60.85 Aligned_cols=60 Identities=25% Similarity=0.374 Sum_probs=48.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+.+|||+|||+|.++..+++.. .+++++|.++.+++.++++....+ ..++++..+|+.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~ 104 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTSVED 104 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHH
Confidence 36799999999999998887753 369999999999999999887655 2356777776543
No 168
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.91 E-value=1.5e-08 Score=57.26 Aligned_cols=49 Identities=41% Similarity=0.629 Sum_probs=38.6
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~ 56 (88)
..+..+.....++.+|||+|||.|.++..+.+. +.+++++|+++.+++.
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh
Confidence 344444433567889999999999999999665 3389999999999887
No 169
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.91 E-value=2.3e-08 Score=62.46 Aligned_cols=73 Identities=15% Similarity=0.234 Sum_probs=60.1
Q ss_pred CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE 80 (88)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 80 (88)
+|..++++.+. ..++..++|..+|.|+.+..+++..+ +++|+|+|.++.+++.+++++..+. .++.+++++
T Consensus 7 Vll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~n 77 (305)
T TIGR00006 7 VLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHDN 77 (305)
T ss_pred hhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeCC
Confidence 46677777776 56778999999999999999999874 5899999999999999999887543 567777776
Q ss_pred cc
Q psy8023 81 GD 82 (88)
Q Consensus 81 ~~ 82 (88)
-.
T Consensus 78 F~ 79 (305)
T TIGR00006 78 FA 79 (305)
T ss_pred HH
Confidence 44
No 170
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.89 E-value=9.7e-09 Score=64.90 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=46.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCC-----CCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL-----LPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~d~~~ 83 (88)
++.+|||+|||.|+....+... .-.+++|+|++.+.++.|+++.+...... .......++.+|...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~ 132 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS 132 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc
Confidence 6789999999999998888876 35689999999999999999994322110 012356678887764
No 171
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.85 E-value=4e-08 Score=64.32 Aligned_cols=64 Identities=23% Similarity=0.208 Sum_probs=50.5
Q ss_pred CCeEEEecCCCChHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLV---GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
+..|+|+|||+|.++...++.. +...+|+++|.++.++...++.++.++ ..++|+++.+|+++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~----w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG----WGDKVTVIHGDMREV 253 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT----TTTTEEEEES-TTTS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC----CCCeEEEEeCcccCC
Confidence 5689999999999987776542 235689999999999888888877777 668999999999873
No 172
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.85 E-value=2.9e-08 Score=60.92 Aligned_cols=61 Identities=30% Similarity=0.328 Sum_probs=52.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
..++..|+|+|+|.|.++..+++.. .+++++|+++.+++..++.+.. ..+++++.+|+.+.
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS-------NPNVEVINGDFLKW 88 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT-------CSSEEEEES-TTTS
T ss_pred CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh-------cccceeeecchhcc
Confidence 3477899999999999999999985 4799999999999999998773 46899999998863
No 173
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.85 E-value=4.3e-08 Score=60.38 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=50.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.+.+||++|||+|..+..+++.. +..+++++|+++.+++.+++++..... .....+++++.+|+.+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~-~~~~~~v~i~~~D~~~ 137 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG-SYDDPRVDLQIDDGFK 137 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc-cccCCceEEEECchHH
Confidence 345699999999999998888764 456899999999999999998765431 1123567777777644
No 174
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.84 E-value=3.4e-09 Score=63.70 Aligned_cols=40 Identities=25% Similarity=0.528 Sum_probs=36.3
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
.+++|+|||||..+..+..... +++|+|+|+.|+++|.++
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEK 166 (287)
T ss_pred ceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhc
Confidence 5899999999999999988864 599999999999999876
No 175
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.83 E-value=3.5e-08 Score=61.27 Aligned_cols=66 Identities=20% Similarity=0.117 Sum_probs=52.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
.++++|||+.|-||.+++..+... -.+|+.+|.|..+++.+++|+..|+ ....+++++.+|+.+.+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg---~~~~~~~~~~~Dvf~~l 187 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNG---LDLDRHRFIQGDVFKFL 187 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHH
Confidence 468899999999999999877653 3479999999999999999999988 22468999999987643
No 176
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.81 E-value=3.6e-08 Score=55.38 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=48.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLV---GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
.+...|+|+|||.|+++..++..+ .++.+|+++|.++..++.+.++.+..... ...+.++..++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 91 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--LEKRLSFIQGDI 91 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--hhccchhhccch
Confidence 456799999999999999999943 25779999999999999998888765411 123445554443
No 177
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.80 E-value=5.5e-08 Score=58.60 Aligned_cols=67 Identities=13% Similarity=-0.047 Sum_probs=49.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc------CCC-CCCCcceEEeeCCcccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG------NPE-LLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------~~~-~~~~~~~~~~~~d~~~~ 84 (88)
.++.+||+.|||.|.....++.+ +.+|+|+|+|+.+++.+.+..... +.. .....++++.++|..+.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 45679999999999999999997 446999999999999886632110 000 01245789999998864
No 178
>KOG2730|consensus
Probab=98.79 E-value=1.6e-08 Score=60.47 Aligned_cols=61 Identities=18% Similarity=0.024 Sum_probs=54.3
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
...+|+|..||.|+.++.++.+.. .|+++|++|.-+..|++|++-+| ..++++|++||..+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYG----I~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYG----VPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeec----CCceeEEEechHHH
Confidence 456899999999999999888753 59999999999999999999999 66799999999875
No 179
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.79 E-value=3.1e-08 Score=57.42 Aligned_cols=50 Identities=28% Similarity=0.434 Sum_probs=39.6
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
..++.+|||+|||+|..++.++... ...+|+.+|.++ .++.++.|++.|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcc
Confidence 4567899999999999999999984 466899999999 9999999998865
No 180
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.79 E-value=6.8e-08 Score=58.05 Aligned_cols=59 Identities=24% Similarity=0.464 Sum_probs=46.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+ .++++...|..
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~ 105 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESG------LKIDYRQTTAE 105 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHH
Confidence 35779999999999999888875 3579999999999999999887654 14556655544
No 181
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.78 E-value=5e-08 Score=58.20 Aligned_cols=77 Identities=23% Similarity=0.381 Sum_probs=67.2
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..-+..+.++++.+.+++|+||-.|+++..+.+.. +...+++.|+++..++.|.+++..++ ...++++..+|...
T Consensus 4 ~~RL~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~----l~~~i~vr~~dgl~ 78 (226)
T COG2384 4 SKRLTTVANLVKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNN----LSERIDVRLGDGLA 78 (226)
T ss_pred hHHHHHHHHHHHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcC----CcceEEEeccCCcc
Confidence 44566667777888889999999999999999985 77899999999999999999999988 78899999999876
Q ss_pred cc
Q psy8023 84 QY 85 (88)
Q Consensus 84 ~~ 85 (88)
.+
T Consensus 79 ~l 80 (226)
T COG2384 79 VL 80 (226)
T ss_pred cc
Confidence 54
No 182
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.78 E-value=1.5e-07 Score=61.99 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=58.8
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..++.+|||+|+|.|+-+..++...+..+.+++.|+++..++..++++.+.+ ..++.+...|+.+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~ 175 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNVALTHFDGRV 175 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCchhh
Confidence 4688899999999999999999998777899999999999999999999988 6778888888764
No 183
>KOG1500|consensus
Probab=98.77 E-value=4.2e-08 Score=62.16 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=53.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.|+|+|||.|.++.+.++.. ..+|+++|.|+ |.+.|++.++.|. ..+++.++.|-+++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~-MAqyA~~Lv~~N~----~~~rItVI~GKiEd 237 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASE-MAQYARKLVASNN----LADRITVIPGKIED 237 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhH-HHHHHHHHHhcCC----ccceEEEccCcccc
Confidence 57789999999999999988875 45899999988 8999999998887 78899999988776
No 184
>PRK04148 hypothetical protein; Provisional
Probab=98.73 E-value=9.8e-08 Score=53.21 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=34.3
Q ss_pred CCCeEEEecCCCCh-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 16 PGAKVLDIGSGSGY-LTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 16 ~~~~vlD~g~G~G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
++.+++|+|||+|. ++..+.+. +.+|+++|+++.+++.++++
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh
Confidence 45789999999997 77666653 45899999999988888775
No 185
>PLN02823 spermine synthase
Probab=98.73 E-value=1.5e-07 Score=59.74 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=54.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
+..++||.+|+|.|..+..+++.. +..+++.+|+++.+++.+++.+..++.. ....+++++.+|+.+.+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~-~~dprv~v~~~Da~~~L 170 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREA-FCDKRLELIINDARAEL 170 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccccccc-ccCCceEEEEChhHHHH
Confidence 455789999999999998888763 4568999999999999999998654311 23568888888877643
No 186
>KOG1663|consensus
Probab=98.72 E-value=1.5e-07 Score=56.45 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=61.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
-..++++|+|.-||+-++.++..++++++|+++|+++...+.+.+.++..+ ...+++++++++.+.+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag----v~~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG----VDHKITFIEGPALESL 138 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc----ccceeeeeecchhhhH
Confidence 356799999999999999999999999999999999999999999999888 7789999999988765
No 187
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.69 E-value=1.9e-07 Score=54.69 Aligned_cols=72 Identities=19% Similarity=0.118 Sum_probs=58.4
Q ss_pred HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+..++....-++.++||+.+|+|.+++..+.+. -.+++.+|.+..++...++|++..+ ...+.+++..|+..
T Consensus 33 lFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~----~~~~~~~~~~da~~ 104 (187)
T COG0742 33 LFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALG----LEGEARVLRNDALR 104 (187)
T ss_pred HHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhC----CccceEEEeecHHH
Confidence 444444312467899999999999999998885 3489999999999999999998876 56788899888874
No 188
>KOG3010|consensus
Probab=98.68 E-value=5.7e-08 Score=58.69 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=37.1
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~ 63 (88)
.++|+|||+|..++.++.++. +|+|+|+|+.|++.+++..+.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~ 77 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPV 77 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCc
Confidence 789999999988888888874 499999999999999887643
No 189
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.68 E-value=1.9e-07 Score=56.46 Aligned_cols=60 Identities=25% Similarity=0.265 Sum_probs=49.0
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (88)
..+..+|+|+|+|.|.++..+++.+ |+.+++..|. |+.++.+++ .++++++.+|..+.+|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-----------~~rv~~~~gd~f~~~P 157 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-----------ADRVEFVPGDFFDPLP 157 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-----------TTTEEEEES-TTTCCS
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-----------ccccccccccHHhhhc
Confidence 3455789999999999999999998 8899999999 778888887 2579999999987776
No 190
>KOG2899|consensus
Probab=98.68 E-value=9.5e-08 Score=57.95 Aligned_cols=50 Identities=28% Similarity=0.379 Sum_probs=43.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
..+..+||+||-.|.+++.+++.++ .-.+.|+||++..++.|+++++...
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~ 106 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPC 106 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccc
Confidence 4567899999999999999999984 4569999999999999999987644
No 191
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.67 E-value=2.7e-07 Score=55.42 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=47.9
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh-cCCCC------CCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ-GNPEL------LPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~------~~~~~~~~~~~d~~~ 83 (88)
..++.+||..|||.|.....++.+ +.+|+|+|+|+.+++.+.+.... ..... ....++++.++|..+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~ 108 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE 108 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccccc
Confidence 456679999999999999999986 45899999999999998433221 11000 124578999999876
No 192
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.66 E-value=9.8e-08 Score=57.62 Aligned_cols=40 Identities=30% Similarity=0.298 Sum_probs=34.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~ 56 (88)
.++.++||+|||+|.++..+++.. ..+|+++|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHH
Confidence 367799999999999999999872 4589999999977654
No 193
>KOG1975|consensus
Probab=98.66 E-value=4.3e-08 Score=61.53 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=53.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCC-CCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL-LPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~d~~~ 83 (88)
.+++..++|+|||.|+..+.+-+.. -.+++|+||.+.+++.|+++.+.+.... -....+.|+.+|.+.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 4677889999999999999888764 4589999999999999999997655111 122457899998775
No 194
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.64 E-value=1.7e-07 Score=59.33 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=50.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeC-Cccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTG-EGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~ 83 (88)
+.+|..|||-.||||++.+...-. +.+++|.|++..|++-++.|++.++ ...+.+... |+++
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~~~~Da~~ 257 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYG-----IEDYPVLKVLDATN 257 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhC-----cCceeEEEeccccc
Confidence 678889999999999998886665 5689999999999999999999987 445555554 5543
No 195
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.64 E-value=1.4e-07 Score=60.56 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=53.0
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
.+|||+.||+|..++.++...+.-.+|+++|+++.+++.+++|++.++ ..++++.++|+...
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~ 107 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANV 107 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHH
Confidence 589999999999999999974223589999999999999999999887 45788888887653
No 196
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.63 E-value=3.9e-07 Score=56.89 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=40.9
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc-CCCCCCCcceEEeeCC
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG-NPELLPNIKFEPQTGE 80 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d 80 (88)
.-++||+|||...+=..+.... .+.+++|+|+++.+++.|++++..| + ...+|+++...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~----L~~~I~l~~~~ 162 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPN----LESRIELRKQK 162 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccc----cccceEEEEcC
Confidence 4579999999887644444443 3789999999999999999999998 6 56788887653
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.62 E-value=4.4e-07 Score=53.19 Aligned_cols=59 Identities=29% Similarity=0.326 Sum_probs=52.4
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++|+|+|.|.-++.++-.. |+.+++.+|....-+.+.++.....+ ..+++++++.+++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~-----L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELG-----LSNVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHH
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhC-----CCCEEEEEeeecc
Confidence 89999999999999999987 88999999999999999999999888 6789999998876
No 198
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.60 E-value=6.8e-07 Score=61.45 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhC-----------------------------------------CCceEEEEeCCHHH
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVG-----------------------------------------SNGEVTAVELIPEV 53 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~-----------------------------------------~~~~v~~~D~~~~~ 53 (88)
.++..++|.+||+|.+.+..+.... ...+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 4577999999999999988765310 12379999999999
Q ss_pred HHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 54 LQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 54 ~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++.|++|+..++ ....+++..+|..+
T Consensus 269 v~~A~~N~~~~g----~~~~i~~~~~D~~~ 294 (702)
T PRK11783 269 IQAARKNARRAG----VAELITFEVKDVAD 294 (702)
T ss_pred HHHHHHHHHHcC----CCcceEEEeCChhh
Confidence 999999999988 55678999998765
No 199
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.60 E-value=3e-07 Score=61.12 Aligned_cols=61 Identities=18% Similarity=0.060 Sum_probs=53.5
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
.+..+||+|||.|.+...++... |+..++|+|+....+..+.+.....+ ..|+.++..|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~-----l~N~~~~~~~~~ 407 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQN-----ITNFLLFPNNLD 407 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcC-----CCeEEEEcCCHH
Confidence 46789999999999999999996 78899999999999999888887766 678888888764
No 200
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.58 E-value=5.3e-07 Score=53.69 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=45.6
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC---CCC-CCCcceEEeeCC
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN---PEL-LPNIKFEPQTGE 80 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~---~~~-~~~~~~~~~~~d 80 (88)
.+++.+. +.++..++|+|||.|......+-.. +-.+.+|+|+.+...+.|++..+... ..+ ....++++..+|
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 3444443 5678899999999999998888776 34459999999988877765442211 000 124678888888
Q ss_pred ccc
Q psy8023 81 GDI 83 (88)
Q Consensus 81 ~~~ 83 (88)
..+
T Consensus 110 fl~ 112 (205)
T PF08123_consen 110 FLD 112 (205)
T ss_dssp TTT
T ss_pred ccc
Confidence 764
No 201
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.57 E-value=2.2e-07 Score=54.64 Aligned_cols=58 Identities=24% Similarity=0.394 Sum_probs=52.0
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..+.|+|+|+|.++...++.. . +|+++|.+|.....|.+|++-.+ ..+++++.+|+..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A-~--rViAiE~dPk~a~~a~eN~~v~g-----~~n~evv~gDA~~ 91 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA-E--RVIAIEKDPKRARLAEENLHVPG-----DVNWEVVVGDARD 91 (252)
T ss_pred hceeeccCCcchHHHHHHhhh-c--eEEEEecCcHHHHHhhhcCCCCC-----CcceEEEeccccc
Confidence 689999999999999888874 3 69999999999999999998777 7899999999875
No 202
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.56 E-value=6.9e-07 Score=56.06 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=55.8
Q ss_pred CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE 80 (88)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 80 (88)
+|..++++.+. ..++..++|..-|.|+.+..+++..+ +++++|+|.++.+++.+++++... .+++.+++++
T Consensus 7 Vll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~~ 77 (310)
T PF01795_consen 7 VLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF------DDRFIFIHGN 77 (310)
T ss_dssp TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES-
T ss_pred ccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc------cceEEEEecc
Confidence 57788888887 66778999999999999999999984 499999999999999999988764 3678888776
Q ss_pred cc
Q psy8023 81 GD 82 (88)
Q Consensus 81 ~~ 82 (88)
-.
T Consensus 78 F~ 79 (310)
T PF01795_consen 78 FS 79 (310)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 203
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.55 E-value=1.6e-06 Score=53.86 Aligned_cols=66 Identities=24% Similarity=0.385 Sum_probs=58.3
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
..++..|||+|++.|+-+..+++.....+++++.|+++.-+...+++.++.+ ..++.....|..+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-----~~~v~~~~~D~~~~ 148 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-----VFNVIVINADARKL 148 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHH
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-----CceEEEEeeccccc
Confidence 5678899999999999999999998778999999999999999999999988 77888887776653
No 204
>KOG4300|consensus
Probab=98.51 E-value=3.2e-07 Score=54.64 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=45.7
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceE-EeeCCccc
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFE-PQTGEGDI 83 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~d~~~ 83 (88)
.+|++|||||..-.+.-. .|..+|+++|.++.|-+.+.+.++++. ..++. |+.++.++
T Consensus 79 ~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~ 137 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGEN 137 (252)
T ss_pred ceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhc
Confidence 589999999997433222 278899999999999999999998875 45565 88887654
No 205
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.49 E-value=2.2e-06 Score=53.48 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=62.0
Q ss_pred CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE 80 (88)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 80 (88)
+|..++++.+. +.++...+|..-|.|+.+..+++.+++.++++++|-++.+++.|++....++ .++.+++++
T Consensus 10 VLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~~ 81 (314)
T COG0275 10 VLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHGN 81 (314)
T ss_pred hHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeCc
Confidence 45677777777 5677899999999999999999999778899999999999999999998754 577777765
Q ss_pred c
Q psy8023 81 G 81 (88)
Q Consensus 81 ~ 81 (88)
-
T Consensus 82 F 82 (314)
T COG0275 82 F 82 (314)
T ss_pred H
Confidence 3
No 206
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.48 E-value=1.9e-06 Score=53.89 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=33.2
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~ 56 (88)
.+++|||+|||+|+.+..++... ...|+|+|.+...+..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~Q 153 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQ 153 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHH
Confidence 68899999999999999999874 3479999999866544
No 207
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.47 E-value=2.2e-06 Score=54.09 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVG---SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
+....+...++++..++|+|||.|.-+..+++.+. ...+++++|+|.++++.+.+++.... .+.-.+.-+++|-
T Consensus 65 ~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~---~p~l~v~~l~gdy 141 (319)
T TIGR03439 65 KHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN---FSHVRCAGLLGTY 141 (319)
T ss_pred HHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc---CCCeEEEEEEecH
Confidence 34445555677788999999999998887777663 24679999999999999999988222 0123344467766
Q ss_pred ccc
Q psy8023 82 DIQ 84 (88)
Q Consensus 82 ~~~ 84 (88)
+++
T Consensus 142 ~~~ 144 (319)
T TIGR03439 142 DDG 144 (319)
T ss_pred HHH
Confidence 554
No 208
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=1.3e-06 Score=52.32 Aligned_cols=61 Identities=25% Similarity=0.277 Sum_probs=53.8
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.+++|+|+|.|.-++.++-.. |+.+++.+|....-+.+.++.....+ ..|++++++.+++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~-----L~nv~i~~~RaE~ 128 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELG-----LENVEIVHGRAEE 128 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhC-----CCCeEEehhhHhh
Confidence 5799999999999999999665 77889999999999999999888877 7788888887765
No 209
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.44 E-value=1.6e-06 Score=52.84 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=52.2
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..+...+...+++..+|+|+|||.=-++..+.... ++..++|.||+..++++........+ .+.++...|...
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLLS 165 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeeec
Confidence 34555666566678899999999999999888764 67899999999999999999988765 334555556654
Q ss_pred c
Q psy8023 84 Q 84 (88)
Q Consensus 84 ~ 84 (88)
+
T Consensus 166 ~ 166 (251)
T PF07091_consen 166 D 166 (251)
T ss_dssp S
T ss_pred c
Confidence 3
No 210
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.43 E-value=1.1e-06 Score=50.78 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=45.9
Q ss_pred HHHHHhhcC--CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023 6 ALELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62 (88)
Q Consensus 6 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 62 (88)
+.+.|.+.+ +++.-|+|+|.|+|-++.+++.+.-++..++++|.|++.....++.+.
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p 94 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP 94 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC
Confidence 334444433 456789999999999999999987788899999999998888877654
No 211
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.43 E-value=2.1e-06 Score=53.35 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=56.2
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
++||-+|-|.|.++..+.+.. +..+++.+|+++..++.+++.+........ ..+++++.+|+.+.+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v 143 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFL 143 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHH
Confidence 599999999999999999985 678999999999999999999987653333 578999999887643
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.42 E-value=1.6e-06 Score=52.93 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
-++.++||-+|-|.|..+..+.+.. +..+++.+|+++..++.+++.+...... ....+++++.+|+...
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~ 142 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKF 142 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHH
T ss_pred CCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHH
Confidence 3567899999999999999888764 5678999999999999999988653311 1246888888887653
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.40 E-value=2e-06 Score=53.83 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=45.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHh------CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLV------GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~------~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
..++.+|+|.+||+|.+...+.+.+ ....+++|+|+++.++..++-++..++ .......+..+|..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~---~~~~~~~i~~~d~l 115 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG---IDNSNINIIQGDSL 115 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT---HHCBGCEEEES-TT
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc---cccccccccccccc
Confidence 3456689999999999999888753 256789999999999999988775544 01222346666654
No 214
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.38 E-value=1.1e-05 Score=50.33 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=55.3
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (88)
..-+|+|+.||.|..........+. ..++...|+++..++..++.++..+ ...-++|.++|+.+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g----L~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG----LEDIARFEQGDAFDR 200 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC----CccceEEEecCCCCH
Confidence 4459999999999998888887643 4689999999999999999999988 445559999999874
No 215
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.34 E-value=3.7e-06 Score=56.16 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=41.5
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCC-------CceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGS-------NGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~-------~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
...+|+|.|||+|.+...++..... ..+++++|+++.+++.++.++...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 3458999999999999999887621 2578999999999999999887654
No 216
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.4e-05 Score=51.17 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=55.5
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
..++.+|||++++-|+=+.++++.... ...|+++|.++.-++..++++++.+ ..++..++.|..
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-----~~nv~~~~~d~~ 218 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-----VRNVIVVNKDAR 218 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCceEEEecccc
Confidence 567899999999999999999999854 3456999999999999999999998 666778777764
No 217
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.29 E-value=7.5e-06 Score=52.65 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=54.9
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhC---C----------------------------Cc-------eEEEEeCCHHHHH
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVG---S----------------------------NG-------EVTAVELIPEVLQ 55 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~---~----------------------------~~-------~v~~~D~~~~~~~ 55 (88)
..++..++|--||+|.+.+..+-... | .. .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 34557899999999999998776642 1 11 3789999999999
Q ss_pred HHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 56 FTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 56 ~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
-|+.|....+ ..+.++|..+|+..
T Consensus 269 ~Ak~NA~~AG----v~d~I~f~~~d~~~ 292 (381)
T COG0116 269 GAKANARAAG----VGDLIEFKQADATD 292 (381)
T ss_pred HHHHHHHhcC----CCceEEEEEcchhh
Confidence 9999999988 78899999999875
No 218
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.28 E-value=8.2e-06 Score=50.57 Aligned_cols=60 Identities=30% Similarity=0.375 Sum_probs=45.8
Q ss_pred HHHHHhhcCC--CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 6 ALELLKDNLK--PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 6 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
++..+....+ .+.+|||+|||.|.-.......++...+++++|.|+.+++.++..+....
T Consensus 21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~ 82 (274)
T PF09243_consen 21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP 82 (274)
T ss_pred HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence 3444443332 35689999999999888877777656689999999999999999876543
No 219
>KOG3115|consensus
Probab=98.26 E-value=3.7e-06 Score=50.01 Aligned_cols=69 Identities=16% Similarity=0.070 Sum_probs=55.4
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCC--CCCCcceEEeeCCcccccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE--LLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~ 86 (88)
.-.+.|+|||.|.+...++..+ |+.-+.|.||--...+..++++...+.. .....++.+...++..-+|
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp 131 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP 131 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc
Confidence 3468999999999999999998 7888999999998888888888655422 1246788888888876554
No 220
>KOG2361|consensus
Probab=98.24 E-value=9.1e-07 Score=53.65 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=39.0
Q ss_pred eEEEecCCCChHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHhhhh
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSN--GEVTAVELIPEVLQFTHYNIQQ 63 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~ 63 (88)
+||++|||.|.+...+.+-. ++ ..++++|.|+.+++..+++...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~ 119 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGY 119 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhcccc
Confidence 79999999999999998875 44 7899999999999999887654
No 221
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.22 E-value=2.9e-05 Score=46.76 Aligned_cols=49 Identities=37% Similarity=0.562 Sum_probs=39.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 62 (88)
+.++.+||-+|+++|.+..+++.-.++.+.|+++|.|+...+..-+..+
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~ 119 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK 119 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc
Confidence 4688999999999999999999999889999999999976655544433
No 222
>PRK10742 putative methyltransferase; Provisional
Probab=98.21 E-value=1.6e-05 Score=48.64 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=53.3
Q ss_pred CCCCC--eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc-CCCCC-C--CcceEEeeCCccccc
Q psy8023 14 LKPGA--KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG-NPELL-P--NIKFEPQTGEGDIQY 85 (88)
Q Consensus 14 ~~~~~--~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~-~--~~~~~~~~~d~~~~~ 85 (88)
+.++. +|||..+|+|..++.++.. +++|+++|-++......++++.+. ...+. . ..+++++.+|..+.+
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence 34554 8999999999999999987 557999999999999999998773 11111 1 267899999987643
No 223
>PRK11524 putative methyltransferase; Provisional
Probab=98.19 E-value=1.2e-05 Score=49.99 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=43.5
Q ss_pred HHHHHhhc-CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023 6 ALELLKDN-LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63 (88)
Q Consensus 6 ~~~~~~~~-~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~ 63 (88)
+++.+... -.++..|||-.+|+|.++.+..+. +. +.+|+|++++.++.|++++..
T Consensus 197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l-gR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS-GR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc-CC--CEEEEeCCHHHHHHHHHHHHh
Confidence 34444332 368899999999999998876665 45 799999999999999999754
No 224
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.18 E-value=1.2e-05 Score=47.83 Aligned_cols=59 Identities=24% Similarity=0.260 Sum_probs=47.7
Q ss_pred HHHHHhhcCCCCCe-EEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 6 ALELLKDNLKPGAK-VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 6 ~~~~~~~~~~~~~~-vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
+++.+...+++... |||+|||||..+.++++.+ |..+-.-.|.++......+.++...+
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~ 73 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAG 73 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcC
Confidence 45555655666555 9999999999999999998 77889999999988877777776654
No 225
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=2.5e-05 Score=46.50 Aligned_cols=38 Identities=34% Similarity=0.724 Sum_probs=35.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
+.++++|+|+|+..|+++..+++..++..+|+++|+.|
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 46789999999999999999999998888899999988
No 226
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=98.09 E-value=3.1e-05 Score=45.94 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=34.0
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
-.++..|||..||+|.++.+..+. ++ +.+|+|+++..++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l-~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL-GR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc-CC--eEEEEeCCHHHHHHhcC
Confidence 367889999999999998886665 35 79999999999999875
No 227
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.00 E-value=6.1e-05 Score=45.28 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCC--CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023 4 ARALELLKDNLK--PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQG 64 (88)
Q Consensus 4 ~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~ 64 (88)
.++++....+.. .+-.++|-|||.|++.-.+.-... .-..+++.|+++.+++.|++|+...
T Consensus 37 sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 37 SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 345555544432 234899999999997766655432 2347999999999999999997543
No 228
>PRK00536 speE spermidine synthase; Provisional
Probab=97.98 E-value=8.6e-05 Score=45.86 Aligned_cols=48 Identities=15% Similarity=-0.079 Sum_probs=41.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
+..++||-+|.|-|.....++++- .+|+.+|+++.+++.+++.+....
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~ 118 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFH 118 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHH
Confidence 566899999999999999999983 289999999999999999776543
No 229
>PRK13699 putative methylase; Provisional
Probab=97.95 E-value=0.00011 Score=44.54 Aligned_cols=49 Identities=22% Similarity=0.244 Sum_probs=41.4
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
-.++..|||-.||+|.++.+..+. +. +++|+|++++..+.+.+++....
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~-~r--~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS-GR--RYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc-CC--CEEEEecCHHHHHHHHHHHHHHH
Confidence 467889999999999998887765 34 69999999999999999886543
No 230
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.93 E-value=0.0001 Score=45.56 Aligned_cols=61 Identities=20% Similarity=0.127 Sum_probs=43.2
Q ss_pred CeEEEecCCC--ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGS--GYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..+||+|||. ....-.+++...|..+|+-+|.+|..+..++..+..+. ..+..++.+|+.+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRD 132 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCC
Confidence 4799999994 34566788888899999999999999999999888755 4468999999886
No 231
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.93 E-value=5.8e-05 Score=46.89 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=42.0
Q ss_pred CCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh-hcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ-QGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.+|+=+||| .-..++.+++...++..++++|+++++++.+++.++ ..+ ...+++|+.+|..+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~----L~~~m~f~~~d~~~ 185 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG----LSKRMSFITADVLD 185 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H----H-SSEEEEES-GGG
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc----ccCCeEEEecchhc
Confidence 4599999999 666777777776677889999999999999999888 334 46789999999764
No 232
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.92 E-value=1.2e-05 Score=46.64 Aligned_cols=37 Identities=35% Similarity=0.518 Sum_probs=31.7
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHH
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~ 52 (88)
++.+++|+||+.|+++..+.+..++..+|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 3479999999999999999998656789999999875
No 233
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.92 E-value=1.4e-05 Score=47.23 Aligned_cols=59 Identities=25% Similarity=0.302 Sum_probs=48.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
.+++|||+|+|.|..++..+... -..+++.|+.+...+..+.|.+.|+ -.+.+...|..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~ 137 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANG------VSILFTHADLI 137 (218)
T ss_pred ccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhcc------ceeEEeecccc
Confidence 47899999999999999988875 3479999999998999899888876 34556655543
No 234
>KOG1501|consensus
Probab=97.90 E-value=5.5e-05 Score=49.84 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=49.7
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.|||+|+|||.++.-..+..+. .|+++|.-..|.+.|++...+++ ..+++.++..-.++
T Consensus 69 ~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng----~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNG----MSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCC----Cccceeeeccccce
Confidence 5899999999998887777533 69999999999999999999998 77888887765443
No 235
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.87 E-value=4.5e-05 Score=46.91 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=35.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
...++||+|+|-|..+..++..+.. |+++|.|+.|....+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~k 135 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSKK 135 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHhC
Confidence 3458999999999999999998844 99999999997666553
No 236
>KOG1227|consensus
Probab=97.87 E-value=6.7e-06 Score=51.43 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=50.2
Q ss_pred CCCCeEEEecCCCChHHH-HHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTA-CFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~-~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..+..|+|+.+|.|+++. ++.+.- -..|+++|++|.+++-.++++..|+ ..++..++.+|-+.
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~ag--Ak~V~A~EwNp~svEaLrR~~~~N~----V~~r~~i~~gd~R~ 256 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAG--AKTVFACEWNPWSVEALRRNAEANN----VMDRCRITEGDNRN 256 (351)
T ss_pred cccchhhhhhcccceEEeehhhccC--ccEEEEEecCHHHHHHHHHHHHhcc----hHHHHHhhhccccc
Confidence 456789999999999999 555553 4589999999999999999998887 55666666666543
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.86 E-value=7.6e-05 Score=47.68 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=29.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
.++++++|+||++|+++..+.+. +.+|+++|..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~ 243 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP 243 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh
Confidence 57889999999999999999987 34899999665
No 238
>KOG2078|consensus
Probab=97.84 E-value=1.9e-05 Score=51.51 Aligned_cols=69 Identities=23% Similarity=0.227 Sum_probs=57.6
Q ss_pred hhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 11 KDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 11 ~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
.....++..|.|+.||.|-+.+..+.. +++|++-|.++++++..+.+++.+. ....+++.+..|+.+.+
T Consensus 244 sg~fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 244 SGLFKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKDFL 312 (495)
T ss_pred hhccCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHHHh
Confidence 335678899999999999999998885 5899999999999999999999876 22345899999887654
No 239
>PHA01634 hypothetical protein
Probab=97.81 E-value=0.0001 Score=41.06 Aligned_cols=48 Identities=13% Similarity=-0.101 Sum_probs=41.9
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
.+++|+|+|.+.|..++.++-.. -.+|+++|.++...+..+++.+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhhe
Confidence 57899999999999999998875 3489999999999999999887654
No 240
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.80 E-value=9.6e-06 Score=43.19 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=17.1
Q ss_pred EEecCCCChHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 21 LDIGSGSGYLTACFADLVGSNG--EVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 21 lD~g~G~G~~~~~l~~~~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
||+|+..|..+..+++...+.. +++++|..+. .+.+++.+++.+ ...+++++.+|..+.+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~----~~~~~~~~~g~s~~~l 62 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG----LSDRVEFIQGDSPDFL 62 (106)
T ss_dssp --------------------------EEEESS-------------GG----G-BTEEEEES-THHHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC----CCCeEEEEEcCcHHHH
Confidence 6899999999999998875554 7999999996 444444444433 4567999999986643
No 241
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00019 Score=42.84 Aligned_cols=48 Identities=33% Similarity=0.515 Sum_probs=40.3
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 62 (88)
+.++.+||-+|+.+|.+..+++.-.+ .+.++++|.|+...+.......
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~ 121 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE 121 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH
Confidence 46889999999999999999999874 7899999999977655544443
No 242
>KOG1122|consensus
Probab=97.75 E-value=0.00018 Score=47.02 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=58.0
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
.+++.+|||+++..|+-+.+++...+..+.+++.|.+...+.....++.+++ ..+..+.+.|..
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-----v~ntiv~n~D~~ 302 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-----VTNTIVSNYDGR 302 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-----CCceEEEccCcc
Confidence 4678999999999999999999999888999999999999999999999998 677777887775
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.74 E-value=0.00012 Score=47.34 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=55.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--hhhcCCCCCCCcceEEeeCCccccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN--IQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
+...++|-+|.|-|.-...+.++ +.-.+++-+|++|.|++.++++ .+..+..++...+++++..|+.+++
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl 359 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL 359 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH
Confidence 34468999999999988888887 3467999999999999999954 3444455566789999999998754
No 244
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.69 E-value=2.7e-05 Score=47.40 Aligned_cols=64 Identities=28% Similarity=0.291 Sum_probs=49.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..+.+|||.|.|.|++++..+++. -.+|+.+|.+|..++.|.-|--..+ .....++++.+|+.+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~---l~~~~i~iilGD~~e 196 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRE---LFEIAIKIILGDAYE 196 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCcc---ccccccEEecccHHH
Confidence 468899999999999999988874 2389999999999988876532111 123468999999876
No 245
>KOG4589|consensus
Probab=97.59 E-value=0.00019 Score=42.47 Aligned_cols=37 Identities=35% Similarity=0.566 Sum_probs=33.6
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCC
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELI 50 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~ 50 (88)
+.++.+|||+||..|.++.-..+..+|++.|.|+|+-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 4678899999999999999999998899999999974
No 246
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.54 E-value=0.0012 Score=35.88 Aligned_cols=58 Identities=29% Similarity=0.343 Sum_probs=37.6
Q ss_pred EEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 20 vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++|+|||+|... .+.........++++|.++.++..++..... . ....+.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A----GLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c----CCCceEEEEecccc
Confidence 999999999987 4444432224799999999999885555433 2 01115566665544
No 247
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.51 E-value=0.00089 Score=43.45 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=50.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCc-ceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI-KFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~d~~~ 83 (88)
.+.++||.=+|+|.=++..+...+...+|++-|+|+++++..++|++.|+ ... ++++.+.|+..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~----~~~~~~~v~~~DAn~ 113 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG----LEDERIEVSNMDANV 113 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-----SGCCEEEEES-HHH
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc----ccCceEEEehhhHHH
Confidence 45589999999999999999986555689999999999999999999988 444 68888888754
No 248
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.49 E-value=0.00035 Score=41.46 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=30.9
Q ss_pred CCCeEEEecCCCChHHHHH----HHHh----CCCceEEEEeCCHHHHHHHHHhh
Q psy8023 16 PGAKVLDIGSGSGYLTACF----ADLV----GSNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l----~~~~----~~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
+.-+||-.||++|.-+..+ .+.. +...+++|+|+|+.+++.|++-.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~ 84 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGI 84 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTE
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCC
Confidence 3458999999999844443 3311 11458999999999999997654
No 249
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.48 E-value=0.0014 Score=39.96 Aligned_cols=65 Identities=22% Similarity=0.187 Sum_probs=39.8
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh---hhcCCC-CCCCcceEEeeCCccccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI---QQGNPE-LLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~---~~~~~~-~~~~~~~~~~~~d~~~~~ 85 (88)
.+|||..+|.|..++.++.. +++|+++|-||.+....++-+ ...... .....+++++.+|..+.+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L 145 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL 145 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC
T ss_pred CEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH
Confidence 48999999999999999864 458999999997655554443 332200 001368999999988754
No 250
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.41 E-value=0.00052 Score=41.29 Aligned_cols=63 Identities=22% Similarity=0.055 Sum_probs=40.7
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (88)
..+.||.|+|.|.++..++-.. -.+|..+|.++..++.|++.+.... ....++.+.-+++..|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P 118 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTP 118 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG---
T ss_pred cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccC
Confidence 4589999999999998775543 3379999999999999998776522 2334455554444333
No 251
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.33 E-value=0.0019 Score=40.11 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=34.8
Q ss_pred CCeEEEecCCCCh----HHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhhh
Q psy8023 17 GAKVLDIGSGSGY----LTACFADLVG----SNGEVTAVELIPEVLQFTHYNIQ 62 (88)
Q Consensus 17 ~~~vlD~g~G~G~----~~~~l~~~~~----~~~~v~~~D~~~~~~~~a~~~~~ 62 (88)
.-+||-+||++|- +++.+.+..+ ...+++|+|+|..+++.|+.-+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y 150 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIY 150 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCC
Confidence 5689999999997 3334445543 25789999999999999976553
No 252
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.00048 Score=41.96 Aligned_cols=38 Identities=34% Similarity=0.325 Sum_probs=32.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHH
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL 54 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~ 54 (88)
.++.++||+|+.||+++..+.+.. -.+|+|+|.....+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql 115 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQL 115 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCcc
Confidence 578899999999999999999984 34899999877443
No 253
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.27 E-value=0.00093 Score=39.96 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=35.1
Q ss_pred CCCeEEEecCCCChHHHHHHH---HhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFAD---LVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~---~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++..|+|+|.-.|+-++.++. .++++++|+++|++..... ++....++ ...+++++.||..+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp----~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHP----MSPRITFIQGDSID 96 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG--------TTEEEEES-SSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhcc----ccCceEEEECCCCC
Confidence 346899999999999888765 3456789999999653322 12222233 35789999999875
No 254
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=97.26 E-value=0.0011 Score=40.68 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCCC--CCeEEEecCCCChHHHHHHHHhCCC-------ceEEEEeCCHHHHHHHHHhhhh
Q psy8023 4 ARALELLKDNLKP--GAKVLDIGSGSGYLTACFADLVGSN-------GEVTAVELIPEVLQFTHYNIQQ 63 (88)
Q Consensus 4 ~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~l~~~~~~~-------~~v~~~D~~~~~~~~a~~~~~~ 63 (88)
.+++......-.+ .-+|+|+|+|.|.+...+++.+... .+++.+|.|+.+.+.-++++..
T Consensus 4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4455555543223 3599999999999999998887433 4899999999888888887765
No 255
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.19 E-value=0.0012 Score=41.41 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=33.7
Q ss_pred CCeEEEecCCCChHHHHHH----HHhC---CCceEEEEeCCHHHHHHHHHhh
Q psy8023 17 GAKVLDIGSGSGYLTACFA----DLVG---SNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~----~~~~---~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
.-+||-.||++|--...++ +..+ .+.+|+|+|+|+.+++.|++-.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 3699999999998444433 3221 1468999999999999998764
No 256
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0019 Score=41.67 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=43.4
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
..+|+|.-+|+|.=++.++... +..+++.-|+||.+++..++|++.|.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~N~ 100 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRLNS 100 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHhcC
Confidence 5789999999999999999987 33499999999999999999999984
No 257
>KOG4058|consensus
Probab=97.02 E-value=0.0017 Score=37.27 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=44.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
.+..+.+|+|+|-|.+....++.- --..+|+|+++-.+..++-..-+.+ ...+..|...|+
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g----~~k~trf~Rkdl 131 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAG----CAKSTRFRRKDL 131 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHh----cccchhhhhhhh
Confidence 344589999999999988888873 2358999999999988887766555 334444544444
No 258
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.81 E-value=0.0032 Score=34.03 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
+....+|+|||+|.+...+... +-+-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 3557999999999998777765 33467888754
No 259
>KOG2651|consensus
Probab=96.79 E-value=0.011 Score=38.64 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=35.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
.-+.++|+|.|.|.++..+.-.+ +..|.++|-|....+.|++.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence 34589999999999999998876 66899999998777666543
No 260
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=96.78 E-value=0.0096 Score=33.57 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=28.0
Q ss_pred EecCCCC--hHHHHHH-HHhCCCceEEEEeCCHHHHHHHHHh--hhhc
Q psy8023 22 DIGSGSG--YLTACFA-DLVGSNGEVTAVELIPEVLQFTHYN--IQQG 64 (88)
Q Consensus 22 D~g~G~G--~~~~~l~-~~~~~~~~v~~~D~~~~~~~~a~~~--~~~~ 64 (88)
|+|+..| .....+. +...+..+++++|.+|..++..+++ +..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 5555544 2345778999999999999999998 5544
No 261
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.75 E-value=0.037 Score=34.02 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=39.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (88)
-.+++|+=+| --=.++++++-. +...+++-+|+++..++..++..++.+ .. ++.+..|..+++|
T Consensus 43 L~gk~il~lG-DDDLtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~g-----l~-i~~~~~DlR~~LP 106 (243)
T PF01861_consen 43 LEGKRILFLG-DDDLTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEG-----LP-IEAVHYDLRDPLP 106 (243)
T ss_dssp STT-EEEEES--TT-HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---
T ss_pred ccCCEEEEEc-CCcHHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcC-----Cc-eEEEEecccccCC
Confidence 4678999888 333344555443 356799999999999999999999887 33 9999999999887
No 262
>KOG3987|consensus
Probab=96.74 E-value=0.00025 Score=42.72 Aligned_cols=42 Identities=29% Similarity=0.292 Sum_probs=36.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
.+.++||+|+|.|-++..++..+. +|+++|.|..|....++.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK 153 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc
Confidence 456899999999999999998873 499999999998877654
No 263
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.71 E-value=0.01 Score=39.90 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=42.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGS---NGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
+..+|+|-.||+|+........++. ...++|.|+++.....++-+.-.++
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg 238 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG 238 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence 5568999999999998888887743 3679999999999999999987766
No 264
>KOG1596|consensus
Probab=96.68 E-value=0.0036 Score=38.61 Aligned_cols=48 Identities=35% Similarity=0.585 Sum_probs=40.8
Q ss_pred cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHH----HHHHHHh
Q psy8023 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV----LQFTHYN 60 (88)
Q Consensus 13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~----~~~a~~~ 60 (88)
+++++.+||-+|++.|....++..-.+|.+-|+++|.|+.. +..|+++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR 204 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR 204 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc
Confidence 45789999999999999999999999999999999999844 4455443
No 265
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.61 E-value=0.0073 Score=37.58 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=35.5
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~ 63 (88)
+++|+.||.|..+..+.+.. -..+.++|+++.+++..+.|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~ 44 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN 44 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC
Confidence 68999999999988887652 33589999999999988887653
No 266
>KOG2940|consensus
Probab=96.54 E-value=0.0066 Score=37.34 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=36.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
..+.++|+||+.|.+..++.... -.+++.+|.|..|++.++.-
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhcc
Confidence 45689999999999999988763 45799999999999998774
No 267
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=96.50 E-value=0.019 Score=35.65 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=36.2
Q ss_pred HHHHHHHhhc--CCCCCeEEEecCCCChHHHHHHHHhC----CCceEEEEeCCH
Q psy8023 4 ARALELLKDN--LKPGAKVLDIGSGSGYLTACFADLVG----SNGEVTAVELIP 51 (88)
Q Consensus 4 ~~~~~~~~~~--~~~~~~vlD~g~G~G~~~~~l~~~~~----~~~~v~~~D~~~ 51 (88)
+.++..+... +.++..++|+|||.|.++..+++... +...++.+|-..
T Consensus 4 sSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 4 SSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 3455555542 45677999999999999999999873 346899999855
No 268
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.46 E-value=0.011 Score=33.49 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=27.3
Q ss_pred eEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023 43 EVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE 80 (88)
Q Consensus 43 ~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 80 (88)
+|+++|+.+++++.+++++...+ ...+++++..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~----~~~~v~li~~s 34 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG----LEDRVTLILDS 34 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-
T ss_pred CEEEEECHHHHHHHHHHHHHhcC----CCCcEEEEECC
Confidence 69999999999999999999887 45678887764
No 269
>KOG3178|consensus
Probab=96.38 E-value=0.0094 Score=38.25 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=42.0
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (88)
-...+|+|.|.|.++-.+...+ | ++-+++.+...+..+...+. .+ ++.+-+|..+..|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g--------V~~v~gdmfq~~P 235 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG--------VEHVAGDMFQDTP 235 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC--------cceecccccccCC
Confidence 3678999999999999999976 5 48888888877766666554 22 5555555555443
No 270
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.044 Score=34.06 Aligned_cols=54 Identities=31% Similarity=0.457 Sum_probs=43.4
Q ss_pred HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
.+...-.++..|+|.-+|+|.+.+..... +. +++++|++++.++.+.+++....
T Consensus 215 ~i~~~s~~~diVlDpf~GsGtt~~aa~~~-~r--~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 215 LIRDYSFPGDIVLDPFAGSGTTGIAAKNL-GR--RFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred HHHhcCCCCCEEeecCCCCChHHHHHHHc-CC--ceEEEecCHHHHHHHHHHHHhhc
Confidence 33334567889999999999998876665 34 69999999999999999987644
No 271
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.052 Score=35.26 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=43.9
Q ss_pred HHHHHHhhcCCC-CCeEEEecCCCChHHHHHHHHh---C----CCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023 5 RALELLKDNLKP-GAKVLDIGSGSGYLTACFADLV---G----SNGEVTAVELIPEVLQFTHYNIQQG 64 (88)
Q Consensus 5 ~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~l~~~~---~----~~~~v~~~D~~~~~~~~a~~~~~~~ 64 (88)
.+++.+.....| .-.++|+|.|.|.+...+++.. . ...++..+|.|++..+.=+++++..
T Consensus 65 ~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 65 QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 445555544343 4479999999999999887765 1 2468999999999887777776654
No 272
>KOG2360|consensus
Probab=96.16 E-value=0.013 Score=38.16 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=53.5
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+++..|+|.+|-.|.-+++++....+.++++|.|.++...+..+..++..+ ...++...+|.+.
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag-----~~~~~~~~~df~~ 275 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG-----VSIVESVEGDFLN 275 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC-----CCccccccccccC
Confidence 4567899999999999999999998778999999999999888888887766 4455555666554
No 273
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.14 E-value=0.014 Score=35.87 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=36.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
++.++||+|.|.-.+=..+..+ .-+.+++|.|+++.+++.|+.++..|.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N~ 126 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISANP 126 (292)
T ss_pred CceEEEeeccCcccccccccce-eecceeecCccCHHHHHHHHHHHHcCc
Confidence 4558899998866542222222 236689999999999999999998874
No 274
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.07 E-value=0.022 Score=35.59 Aligned_cols=42 Identities=29% Similarity=0.256 Sum_probs=33.7
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 62 (88)
+++|+.||.|+++..+-+.. -..+.++|+++.+.+.-+.|+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc
Confidence 68999999999999887763 3368999999998777777664
No 275
>KOG2352|consensus
Probab=96.02 E-value=0.0022 Score=42.68 Aligned_cols=60 Identities=25% Similarity=0.302 Sum_probs=46.6
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
+..++-+|-|.|.+..++.-.+ +..++++++++|++++.+++++.... ..+..++..|..
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q-----~~r~~V~i~dGl 355 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQ-----SDRNKVHIADGL 355 (482)
T ss_pred cCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhh-----hhhhhhhHhhch
Confidence 4468888888899999998887 67899999999999999999986544 334445444443
No 276
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.01 E-value=0.011 Score=33.86 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=27.2
Q ss_pred EEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 45 TAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 45 ~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+|+|+|++|++.|+++.+..... ...+++++++|+.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--~~~~i~~~~~d~~~ 37 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--CYKCIEWIEGDAID 37 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--CCCceEEEEechhh
Confidence 48999999999998876532200 13579999999864
No 277
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.01 E-value=0.0044 Score=41.50 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=27.7
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
.+||+|||+|.++..+..+---.-.+..-|..+..+++|.++
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR 161 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER 161 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc
Confidence 679999999999999988621100112224455677777765
No 278
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.94 E-value=0.025 Score=34.19 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=17.4
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHH
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFA 35 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~ 35 (88)
.+++++.. .++...|-|+|||.+.++..+.
T Consensus 62 ~iI~~l~~-~~~~~viaD~GCGdA~la~~~~ 91 (219)
T PF05148_consen 62 VIIEWLKK-RPKSLVIADFGCGDAKLAKAVP 91 (219)
T ss_dssp HHHHHHCT-S-TTS-EEEES-TT-HHHHH--
T ss_pred HHHHHHHh-cCCCEEEEECCCchHHHHHhcc
Confidence 45556653 3456799999999999886554
No 279
>KOG2671|consensus
Probab=95.82 E-value=0.0088 Score=38.65 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=48.1
Q ss_pred cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHH-------HHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ-------FTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+.+|+.|+|-.-|||.+....++. ++.|+|.||+-.++. ..+.|+++++.+ ..-+.++.+|...
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~---~~fldvl~~D~sn 276 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS---SQFLDVLTADFSN 276 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc---chhhheeeecccC
Confidence 3678999999999999998887776 458999999998876 446677777633 2334566666543
No 280
>KOG1098|consensus
Probab=95.81 E-value=0.014 Score=40.40 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=33.9
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
+.+...|||+||..|++....++..+.++-|+|+|+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 56788999999999999999999987788899999865
No 281
>KOG2920|consensus
Probab=95.79 E-value=0.018 Score=36.09 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=32.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHH
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL 54 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~ 54 (88)
..+++|||+|||.|...+...... ...+...|++.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 568899999999999988877763 35799999998777
No 282
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=95.76 E-value=0.026 Score=34.41 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=35.9
Q ss_pred HHHHHhhcCC--CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023 6 ALELLKDNLK--PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62 (88)
Q Consensus 6 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 62 (88)
++.++...++ +..+++|..||+|.++..+... ..+++.-|+++..+...+..++
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHHHHHh
Confidence 4555666666 5789999999999998777653 4579999999988776664443
No 283
>KOG0024|consensus
Probab=95.74 E-value=0.042 Score=35.28 Aligned_cols=45 Identities=31% Similarity=0.536 Sum_probs=39.5
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
+..+.+||-+|+| .|..+...++.+ .-.+|+.+|.++..++.|++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH
Confidence 5788999999999 677888888887 45789999999999999998
No 284
>KOG2198|consensus
Probab=95.74 E-value=0.069 Score=34.75 Aligned_cols=53 Identities=28% Similarity=0.380 Sum_probs=41.9
Q ss_pred cCCCCCeEEEecCCCChHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 13 NLKPGAKVLDIGSGSGYLTACFADLVGS---NGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
.+.++.+|||+|+.-|.-+..+.+..-+ .+.+++-|.++.-+........+..
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~ 207 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP 207 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC
Confidence 3678999999999999999888887522 3489999999988777777665443
No 285
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.55 E-value=0.071 Score=35.82 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=34.3
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
..+++|+.||.|++...+-... .-.+.++|+++.+.+.-+.|+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG--~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG--GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC--CEEEEEEechHHHHHHHHHHc
Confidence 3489999999999999986652 235789999998887777665
No 286
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.55 E-value=0.23 Score=31.11 Aligned_cols=40 Identities=30% Similarity=0.261 Sum_probs=33.6
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
+.+||--|||.|.++..++.. +-.+.|.|.|--|+-..+-
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHH
Confidence 468999999999999999997 4479999999988654444
No 287
>KOG2793|consensus
Probab=95.37 E-value=0.049 Score=33.66 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=27.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
+..+||++|+|+|-.++..+... ..+|...|...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~ 119 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK 119 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchh
Confidence 34579999999998888888765 55899999866
No 288
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.12 E-value=0.1 Score=33.66 Aligned_cols=46 Identities=28% Similarity=0.387 Sum_probs=37.8
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
+.++++|+-+|+| .|..++.+++.. ..+|+++|.+++-.+.|++.-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lG 210 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLG 210 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhC
Confidence 6788888888866 566888888876 379999999999999998863
No 289
>KOG2912|consensus
Probab=95.02 E-value=0.086 Score=34.02 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=41.3
Q ss_pred EEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 21 lD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
+|+|+|...+-..+... ..+..+.++|++...++.|.+++.+++ ..+.+.++..+.
T Consensus 107 iDIgtgasci~~llg~r-q~n~~f~~teidd~s~~~a~snV~qn~----lss~ikvV~~~~ 162 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGAR-QNNWYFLATEIDDMSFNYAKSNVEQNN----LSSLIKVVKVEP 162 (419)
T ss_pred eeccCchhhhHHhhhch-hccceeeeeeccccccchhhccccccc----cccceeeEEecc
Confidence 68888776654333333 245789999999999999999999988 566666666544
No 290
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.90 E-value=0.049 Score=33.81 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=30.9
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~ 64 (88)
++.++||+|||.-......+... -.+++..|.++.-.+..++.++..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~--f~~I~l~dy~~~N~~el~kWl~~~ 102 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW--FEEIVLSDYSEQNREELEKWLRKE 102 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT--EEEEEEEESSHHHHHHHHHHHTT-
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh--hcceEEeeccHhhHHHHHHHHCCC
Confidence 46689999999855433323222 336999999999999888887654
No 291
>KOG1253|consensus
Probab=94.83 E-value=0.015 Score=39.07 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=51.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
.++.+|||.=|++|.-++..+...+.-.++++-|.++.+++..++|++.++ ..+.++...+|+
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~----v~~ive~~~~DA 170 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG----VEDIVEPHHSDA 170 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC----chhhcccccchH
Confidence 456689999999999999999998666689999999999999999999886 344445555544
No 292
>KOG1709|consensus
Probab=94.81 E-value=0.28 Score=30.10 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=37.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 62 (88)
.++.+||.+|-|.|....++-++ +..+=+-+|..+..++..++.--
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw 145 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGW 145 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhccc
Confidence 67889999999999988877666 33456778999999998888643
No 293
>KOG2782|consensus
Probab=94.79 E-value=0.061 Score=32.96 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=46.2
Q ss_pred cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
|....++.+. ..++...+|+.-|.|..+..+.+.. +..++++.|-+|.+.+.|+...
T Consensus 31 m~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 31 MLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred ehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhh
Confidence 4556666666 4567889999999999999999986 7889999999998877776554
No 294
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.68 E-value=0.16 Score=32.89 Aligned_cols=46 Identities=35% Similarity=0.582 Sum_probs=37.2
Q ss_pred CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
+.++.+|+..|+|. |..++.+++..+ ..++++++.+++..+.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 56788999999987 888888888863 23699999999888888765
No 295
>KOG0821|consensus
Probab=94.56 E-value=0.16 Score=31.34 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=42.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
.+..|+++|.|.|+++..+.... -.+...+|+++..+.-.+..... . ..+..++.+|+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EA-a-----~~~~~IHh~D~L 108 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEA-A-----PGKLRIHHGDVL 108 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhc-C-----CcceEEeccccc
Confidence 45689999999999999998864 44788899988776555444332 2 346667777765
No 296
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.49 E-value=0.08 Score=31.89 Aligned_cols=38 Identities=45% Similarity=0.704 Sum_probs=33.8
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
+.+++.|+|+-.|.|.++..++...++.+.|++.--.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 46889999999999999999999999999998886554
No 297
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.46 E-value=0.18 Score=32.50 Aligned_cols=46 Identities=30% Similarity=0.517 Sum_probs=37.5
Q ss_pred CCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023 15 KPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 15 ~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
.++.+|+-+||| .|..+..+++.. ...+++.+|.++.-++.|++..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhC
Confidence 344489999999 577777788876 4578999999999999999854
No 298
>KOG1269|consensus
Probab=94.32 E-value=0.074 Score=34.63 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=41.8
Q ss_pred HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
.+.....++..++|+|||.|.....+.... ..++++++.++..+..+.+......
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~ 157 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAY 157 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHH
Confidence 333345667789999999999988887763 6689999999988777766655433
No 299
>KOG0822|consensus
Probab=94.30 E-value=0.44 Score=32.87 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=45.8
Q ss_pred eEEEecCCCChHHHHHHH---HhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 19 KVLDIGSGSGYLTACFAD---LVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~---~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
+|+-+|.|-|-+.-...+ ...+..+++++|.+|.++.-.+.. .... ...+++++..|.+++.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~----W~~~Vtii~~DMR~w~ 434 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFEC----WDNRVTIISSDMRKWN 434 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhh----hcCeeEEEeccccccC
Confidence 688999999987666544 344567899999999887666552 2222 4678999999988764
No 300
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.27 E-value=0.14 Score=32.53 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=32.7
Q ss_pred EEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023 20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62 (88)
Q Consensus 20 vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 62 (88)
|+|+.||.|..+..+.+.. --.+.++|+++.+++.-+.|+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC
Confidence 6899999999998887652 2246789999999888887764
No 301
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.04 E-value=0.13 Score=27.47 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=28.2
Q ss_pred CCCChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHh
Q psy8023 25 SGSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 25 ~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~ 60 (88)
||.|..+..+++.+.... +++.+|.+++.++.+++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE 40 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc
Confidence 677889999988775555 799999999887777653
No 302
>PTZ00357 methyltransferase; Provisional
Probab=94.04 E-value=0.49 Score=33.86 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=44.4
Q ss_pred eEEEecCCCChHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhhcCCCC-----CCCcceEEeeCCcccc
Q psy8023 19 KVLDIGSGSGYLTACFADLV---GSNGEVTAVELIPEVLQFTHYNIQQGNPEL-----LPNIKFEPQTGEGDIQ 84 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~d~~~~ 84 (88)
.|+-+|+|-|-+.....+.. +-..+++++|.++..+.....+..... .| ....+|+++..|++.+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~e-eW~n~~~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDP-EWTQLAYTFGHTLEVIVADGRTI 775 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccc-ccccccccCCCeEEEEeCccccc
Confidence 58999999999876665543 345689999999775555544432222 12 0135799999998875
No 303
>KOG3045|consensus
Probab=94.02 E-value=0.13 Score=32.33 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=20.3
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCChHHH
Q psy8023 4 ARALELLKDNLKPGAKVLDIGSGSGYLTA 32 (88)
Q Consensus 4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~ 32 (88)
..+++++.. .+....|.|+|||.+.++.
T Consensus 169 d~ii~~ik~-r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 169 DVIIRKIKR-RPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred HHHHHHHHh-CcCceEEEecccchhhhhh
Confidence 345566653 3556789999999999875
No 304
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.93 E-value=0.26 Score=31.51 Aligned_cols=44 Identities=27% Similarity=0.237 Sum_probs=35.8
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 62 (88)
..+++|+.||.|++...+-... ---+.++|+++.+++.-+.|+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCC
Confidence 4589999999999998877753 2358999999998888777766
No 305
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.89 E-value=0.37 Score=30.70 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=48.3
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (88)
.++.|+-+| ---.++++++-. +-..++.-+|+++..+++-++.....+ ..+++...-|+++.+|
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g-----~~~ie~~~~Dlr~plp 215 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELG-----YNNIEAFVFDLRNPLP 215 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhC-----ccchhheeehhcccCh
Confidence 355688888 333344444332 234589999999999999999999888 7889999999998887
No 306
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=93.64 E-value=0.54 Score=27.08 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=28.5
Q ss_pred HHHHHHhhcCC-CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeC
Q psy8023 5 RALELLKDNLK-PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49 (88)
Q Consensus 5 ~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~ 49 (88)
.++++....+. -..-|+|+|-|+|.+=-++.+.+ |+-+++.+|-
T Consensus 16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR 60 (160)
T PF12692_consen 16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIF-PDRRIYVFDR 60 (160)
T ss_dssp HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEES
T ss_pred HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhC-CCCeEEEEee
Confidence 35566655443 23479999999999999999998 7788999995
No 307
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.55 E-value=0.3 Score=33.28 Aligned_cols=42 Identities=38% Similarity=0.450 Sum_probs=34.9
Q ss_pred CCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 16 PGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 16 ~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
++.+|+-+|+|. |..++..++..+ .+|+++|.+++.++.+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 578999999995 557777788774 489999999999888877
No 308
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.50 E-value=0.47 Score=31.21 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=31.9
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
+.++.+||-|.+|.......+.. .+.+|++||+||......+-+.
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~---~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLA---GPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhc---CCceEEEEeCCHHHHHHHHHHH
Confidence 67888999998776665555444 3468999999997765554443
No 309
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.42 E-value=1.1 Score=27.45 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=39.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++|-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.+.... ..++.++..|+.+
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~ 69 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLTK 69 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCC
Confidence 45677766655 44555555543 246689999998877766666554322 2356777777765
No 310
>KOG1331|consensus
Probab=93.41 E-value=0.043 Score=34.55 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
.+.+..++|+|||.|-.... .|.+.+++.|.+...+..+++.
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~ 84 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS 84 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC
Confidence 45578999999999985322 2667899999999887776653
No 311
>KOG0022|consensus
Probab=93.31 E-value=0.48 Score=30.69 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=36.1
Q ss_pred cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
.+++++.+.-+|+|.=.++...-.+...-.+++++|++++-.+.+++.
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 367888898898886555555544433467899999999999888774
No 312
>KOG3201|consensus
Probab=93.28 E-value=0.044 Score=32.05 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=38.2
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~ 64 (88)
+.+|+++|.|.=.++-.+.....+...|..+|-++.+++..++....|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 568999999965555555444458889999999999999999887766
No 313
>PRK07904 short chain dehydrogenase; Provisional
Probab=92.92 E-value=1.1 Score=27.22 Aligned_cols=64 Identities=8% Similarity=0.014 Sum_probs=41.5
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHh-CC-CceEEEEeCCHHH-HHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLV-GS-NGEVTAVELIPEV-LQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~-~~~v~~~D~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+..++++|-.|+ +|+++..+++.+ .. +.+|+.++-+++. ++.+.+.+...+ ..++.++..|+.+
T Consensus 5 ~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~v~~~~~D~~~ 71 (253)
T PRK07904 5 VGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-----ASSVEVIDFDALD 71 (253)
T ss_pred cCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-----CCceEEEEecCCC
Confidence 445667888776 567777777764 23 3589999887764 555555554433 3367788787754
No 314
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.88 E-value=0.089 Score=34.44 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=30.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHH
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~ 53 (88)
..++|||+|.|.|.-..++...++....++.+|.|+..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l 150 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL 150 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH
Confidence 34679999999999888887877555678999999844
No 315
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.84 E-value=1.4 Score=27.17 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=38.6
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++--|+ |+++..+++.+..+.+|+.++.++..++...+.++..+ .++.++..|+.+
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d 60 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG------FDVSTQEVDVSS 60 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEeecCC
Confidence 34555554 57888888887667789999998876665555544322 356667777654
No 316
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=1.2 Score=28.00 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=36.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHh-hhhcC
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGS---NGEVTAVELIPEVLQFTHYN-IQQGN 65 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~-~~~~~ 65 (88)
.+...+|+|+|+..-+..+...+.+ ..+++.+|+|...++...+- ...+.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~ 131 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP 131 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC
Confidence 4568999999999988887776533 36899999999888654443 34443
No 317
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.44 E-value=1.9 Score=28.53 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=30.9
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHh
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~ 60 (88)
+.++++-+|+ |.++..+++.+.. +.+++.+|.+++.++..++.
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 3467777776 6777777666533 56899999999888776653
No 318
>PRK06172 short chain dehydrogenase; Provisional
Probab=92.41 E-value=1.5 Score=26.41 Aligned_cols=61 Identities=11% Similarity=-0.076 Sum_probs=39.9
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|+ +|.++..+++.+. .+.+|+.++-+++.++...+.+...+ .++.++..|+.+
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~ 67 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG------GEALFVACDVTR 67 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCC
Confidence 4567887775 5566666665542 35689999998877666665554432 357777777764
No 319
>KOG2352|consensus
Probab=92.27 E-value=1 Score=30.58 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=43.8
Q ss_pred CCCC-eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGA-KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~-~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+-. +++-+|||+-.+...+.... --.++.+|+|+..++........ . .....+..+|+..
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~-~-----~~~~~~~~~d~~~ 107 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK-E-----RPEMQMVEMDMDQ 107 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc-C-----CcceEEEEecchh
Confidence 3334 89999999999888877754 23699999999998888776642 2 3445566666543
No 320
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.20 E-value=1.6 Score=26.39 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=40.7
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.+.... ...++.++..|+.+
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV----AGARVLAVPADVTD 69 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc----CCceEEEEEccCCC
Confidence 45678877754 55566666554 345689999998877776666555421 13457777777764
No 321
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.19 E-value=1.6 Score=26.18 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=39.2
Q ss_pred CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++-.| |+|.++..+++.+. .+.+|+.++.+++..+...+...... ..++.++..|+.+
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~ 62 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-----AVAVSTHELDILD 62 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCC
Confidence 3566566 56777777766643 45689999998876655544444322 3567888888765
No 322
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=92.06 E-value=0.16 Score=33.34 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.0
Q ss_pred CCeEEEecCCCChHHHHH
Q psy8023 17 GAKVLDIGSGSGYLTACF 34 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l 34 (88)
...|+|+|||+|..++.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 458999999999887665
No 323
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.04 E-value=0.75 Score=29.32 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
..++.+|+-+|+| .|..++.+++......+++++|.+++-++.+++
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4568899999875 233334445542124579999999988887765
No 324
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=92.03 E-value=0.43 Score=28.26 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=44.6
Q ss_pred HHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 7 ~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
-.|+.++...+...+|+|+-.|.+.-..++.. ..++++++|.-.+|-...+-++..++
T Consensus 70 rhwivnhckhdttyidiganvgtfcgiaarhi-tqgkiiaiepltemensirmnvqlnn 127 (286)
T PF05575_consen 70 RHWIVNHCKHDTTYIDIGANVGTFCGIAARHI-TQGKIIAIEPLTEMENSIRMNVQLNN 127 (286)
T ss_pred hHhhhhhccCCceEEEeccccccchhhhhhhc-ccCceEEEechhhhhhheeeeeeeCC
Confidence 45666666677889999999999877667765 67899999988887777776666544
No 325
>PRK05599 hypothetical protein; Provisional
Probab=91.97 E-value=1.7 Score=26.24 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=36.0
Q ss_pred eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++-.|+ +++++..+++.+..+.+|+.++-+++.++...+.++..+ ...+.++..|+.+
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~d 60 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG-----ATSVHVLSFDAQD 60 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc-----CCceEEEEcccCC
Confidence 3555555 455566666665556778888877776666655555433 2345666666654
No 326
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=91.97 E-value=1.1 Score=29.29 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=35.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHh------CCCceEEEEeC----CHHHHHHHHHhhhhcC
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV------GSNGEVTAVEL----IPEVLQFTHYNIQQGN 65 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~------~~~~~v~~~D~----~~~~~~~a~~~~~~~~ 65 (88)
+.-+|+|+|.|.|.-=..+.+.+ +|..++|+++. +...++.+.+++....
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA 169 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFA 169 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHH
Confidence 34589999999998444444433 24558999999 7888888877765443
No 327
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=91.94 E-value=0.35 Score=29.16 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=30.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHH---hCCCceEEEEeCCHHHH
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADL---VGSNGEVTAVELIPEVL 54 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~---~~~~~~v~~~D~~~~~~ 54 (88)
.++..|+++|+-.|+.+++++.. .+.+.+|.++|++-..+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~ 110 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPL 110 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcC
Confidence 35568999999999988877653 45567899999976443
No 328
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.67 E-value=1.9 Score=26.03 Aligned_cols=61 Identities=15% Similarity=0.051 Sum_probs=38.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++|-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.++..+ .++.++..|+.+
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~ 69 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG------GKVVPVCCDVSQ 69 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEccCCC
Confidence 46678877754 45556665554 245689999998877766665554432 345666677654
No 329
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.61 E-value=1.4 Score=24.56 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=24.3
Q ss_pred HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHH
Q psy8023 8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52 (88)
Q Consensus 8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~ 52 (88)
+.+.... +..+++|+|-|.-......++.. +..|+++|+.+.
T Consensus 6 ~~ia~~~-~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~ 47 (127)
T PF03686_consen 6 EYIARLN-NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR 47 (127)
T ss_dssp HHHHHHS--SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S
T ss_pred HHHHHhC-CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc
Confidence 3344333 33499999999888666666654 468999999986
No 330
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=91.56 E-value=1.2 Score=30.30 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=37.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG---SNGEVTAVELIPEVLQFTHYNIQQG 64 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~ 64 (88)
++..+.|..||+|.+.....+... ...++++-+..+.+...++.+...+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~ 268 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH 268 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc
Confidence 446899999999998876554331 2346999999999999999886443
No 331
>PRK07062 short chain dehydrogenase; Provisional
Probab=91.53 E-value=2 Score=26.07 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=39.2
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++.++-.|++ |.++..+++.+ ..+.+|+.++.+++.++.+.+...... ...++.++..|+.+
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~ 70 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF----PGARLLAARCDVLD 70 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEecCCC
Confidence 45677777754 45555665554 346689999998877766655554322 12356666667654
No 332
>PRK09242 tropinone reductase; Provisional
Probab=91.36 E-value=2.1 Score=25.89 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=39.3
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+++++-.|++ |.++..+++.+ ..+.+|+.++.+++..+...+.+.... ...++.++..|+.+
T Consensus 8 ~~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 8 DGQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF----PEREVHGLAADVSD 71 (257)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCCeEEEEECCCCC
Confidence 45677877764 45555555543 245689999988877766665554432 13456777777654
No 333
>PRK06125 short chain dehydrogenase; Provisional
Probab=91.33 E-value=2.1 Score=25.92 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=38.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|+ +|.++..+++.+ ..+.+|+.++.+++..+...+.+.... ..++.++..|+.+
T Consensus 6 ~~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~ 68 (259)
T PRK06125 6 AGKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSS 68 (259)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCC
Confidence 4567787775 455666665543 235689999998877766655554432 2356666666653
No 334
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=91.31 E-value=0.48 Score=30.53 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=16.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHH
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADL 37 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~ 37 (88)
+..-+|.|+||..|..++.+...
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHHH
Confidence 34458999999999999887554
No 335
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.20 E-value=2.1 Score=25.77 Aligned_cols=61 Identities=15% Similarity=0.017 Sum_probs=40.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.| |+|.++..+++.+ ..+.+|+.++-+++.++...+.++..+ .++.++..|+.+
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG------GAAEALAFDIAD 71 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCC
Confidence 567788777 4566667666654 246789999998876666555554433 346677777654
No 336
>PRK07677 short chain dehydrogenase; Provisional
Probab=91.20 E-value=2.2 Score=25.77 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=35.0
Q ss_pred CeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++-.|+ +|.++..+++.+ ..+.+|+.++-++...+...+.+...+ .++.++..|+.+
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP------GQVLTVQMDVRN 61 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCC
Confidence 45666665 444555555543 235688898888776666555554322 356667777654
No 337
>KOG2811|consensus
Probab=90.64 E-value=1.3 Score=29.26 Aligned_cols=40 Identities=25% Similarity=0.422 Sum_probs=28.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEE---EeCCHHHHHH
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTA---VELIPEVLQF 56 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~---~D~~~~~~~~ 56 (88)
++..++++|||-|.++.+++..+ +..+++. +|-...-+.+
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l-~~~~~~l~vlvdR~s~R~K~ 224 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCL-QIQNVYLFVLVDRKSSRLKF 224 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHh-ccccEEEEEeecccchhhhh
Confidence 33689999999999999999998 4445544 6655544433
No 338
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.52 E-value=2 Score=26.80 Aligned_cols=44 Identities=34% Similarity=0.482 Sum_probs=33.3
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
+.++.+||..|+| .|..++.+++.. +.++++++.+++..+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence 5667788887765 467777778875 4679999999988777654
No 339
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=90.38 E-value=2 Score=27.82 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=32.6
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
...+.+|.-+|+|.......+++. +.++.++|+++.-+..-+-++
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~---Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA---PARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC---CceeEEEeCCHHHHHHHHHHH
Confidence 345678999999977776666654 458999999997765544444
No 340
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=90.38 E-value=3.4 Score=26.67 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=43.1
Q ss_pred CeEEEecCCCChHHHHHHHHh-------------------CCCceEEEEeCCH--HHHHHHHHhhhhcCC---------C
Q psy8023 18 AKVLDIGSGSGYLTACFADLV-------------------GSNGEVTAVELIP--EVLQFTHYNIQQGNP---------E 67 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~-------------------~~~~~v~~~D~~~--~~~~~a~~~~~~~~~---------~ 67 (88)
.+|+=+|.|.|.-..+++..+ .+..+++.+|+.+ ..++.....+..... .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 589999999998777777665 1124899999987 345555555443310 0
Q ss_pred ---CCCCcceEEeeCCccc
Q psy8023 68 ---LLPNIKFEPQTGEGDI 83 (88)
Q Consensus 68 ---~~~~~~~~~~~~d~~~ 83 (88)
....-+++|.+.|+..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~ 186 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLS 186 (315)
T ss_pred ccCCccceeeeEEeccccc
Confidence 0123467888888875
No 341
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.16 E-value=1.5 Score=27.90 Aligned_cols=44 Identities=32% Similarity=0.440 Sum_probs=32.9
Q ss_pred CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
+.++.+|+-.|+|. |..++.+++.. +.+++++|.+++.++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence 56788999999853 55666667765 4479999999988877754
No 342
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=90.04 E-value=1.3 Score=22.57 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCh-HHHHHHHHhCCCceEEEEeCCH
Q psy8023 16 PGAKVLDIGSGSGY-LTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 16 ~~~~vlD~g~G~G~-~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
-+++||-+||.+|+ ++..++..++.+...+++-...
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred CCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 34799999999998 5556666666677777776543
No 343
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.04 E-value=2.1 Score=23.71 Aligned_cols=34 Identities=21% Similarity=0.091 Sum_probs=23.9
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHH
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~ 52 (88)
..+|+++|-|.=.......... +..++++|+++.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~ 47 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK 47 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc
Confidence 3489999988766444434432 467999999985
No 344
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=90.03 E-value=1.6 Score=25.48 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=36.3
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
..|+.+|||.=.....+.... ++.+++-+|.- ++++.-++.++..+.. ...+++++..|..+
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~-~~~~~~evD~p-~v~~~K~~~l~~~~~~--~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPA-GGVRWFEVDLP-EVIALKRRLLPESGAR--PPANYRYVPADLRD 141 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTT-TTEEEEEEE-H-HHHHHHHHHHHHTHHH--HHEESSEEES-TTS
T ss_pred cEEEEcCCCCCchHHHhhccc-cceEEEEeCCH-HHHHHHHHHHHhCccc--CCcceeEEeccccc
Confidence 489999999988877777653 35567777764 4666666666654300 01345678887764
No 345
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=90.00 E-value=2.1 Score=27.33 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=37.8
Q ss_pred ecCCCChHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcce----EEeeCCccc
Q psy8023 23 IGSGSGYLTACFADLVGS--NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKF----EPQTGEGDI 83 (88)
Q Consensus 23 ~g~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~d~~~ 83 (88)
+.-|+|.++..+.+++-. ..+++.+|.++..+-..++.+.... ...++ ..+.+|+.+
T Consensus 3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~----~~~~v~~~~~~vigDvrd 65 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF----PDPKVRFEIVPVIGDVRD 65 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC------TTCEEEEE--CTSCCH
T ss_pred EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc----cccCcccccCceeecccC
Confidence 445889999999887532 3589999999999888888875432 12234 345888765
No 346
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.69 E-value=0.95 Score=31.59 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=33.0
Q ss_pred CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+|+-+|+| .++..+++.+. .+.+++.+|.+++.++.+++. + ..++.+|+++
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g--------~~v~~GDat~ 453 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G--------MKVFYGDATR 453 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C--------CeEEEEeCCC
Confidence 456665555 55555555432 245799999999988888652 2 3466666654
No 347
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=89.58 E-value=3.3 Score=25.32 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=42.5
Q ss_pred CCeEEEecCCCCh--HHHHH--HHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 17 GAKVLDIGSGSGY--LTACF--ADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 17 ~~~vlD~g~G~G~--~~~~l--~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
-+.+++.+|+.|. +++.| +.+. .+++++++-.+++.+...++.+...+ ..+.++|+.++..
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~~----~~~~vEfvvg~~~ 106 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEAG----LSDVVEFVVGEAP 106 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhcc----ccccceEEecCCH
Confidence 3478888766543 34444 3332 57899999999988888888887766 3455688888743
No 348
>KOG1201|consensus
Probab=89.56 E-value=3.4 Score=26.45 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=34.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~ 65 (88)
.++.||-=|.|.|.--....+....++++...|++++..+...+.++.++
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC
Confidence 45678888877776333333333345689999999988888877777643
No 349
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.42 E-value=1.2 Score=30.93 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=27.8
Q ss_pred eEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023 19 KVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~ 59 (88)
+|+- ||.|.++..+++... .+.+++.+|.+++.++.+++
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK 441 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 4444 566777777766542 34579999999998887765
No 350
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.33 E-value=1.4 Score=30.21 Aligned_cols=35 Identities=9% Similarity=0.038 Sum_probs=26.7
Q ss_pred CCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023 25 SGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 25 ~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~ 59 (88)
||.|..+..+++.+. .+.+++.+|.+++.++.+++
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE 458 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 566777777777653 34579999999998888765
No 351
>PRK07890 short chain dehydrogenase; Provisional
Probab=89.30 E-value=3.3 Score=24.93 Aligned_cols=61 Identities=15% Similarity=-0.002 Sum_probs=37.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|+ +|.++..+++.+ ..+.+|+.++.++...+...+.....+ .++.++..|+.+
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~ 65 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG------RRALAVPTDITD 65 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC------CceEEEecCCCC
Confidence 4567776664 556666666543 346689999988876655555444322 345666766654
No 352
>PLN02427 UDP-apiose/xylose synthase
Probab=89.29 E-value=2.2 Score=27.60 Aligned_cols=62 Identities=5% Similarity=-0.007 Sum_probs=38.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGS--NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++|| +--|+|+++..+++.+-. ..+|+++|.+............. . ...+++++.+|+.+
T Consensus 13 ~~~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~-~----~~~~~~~~~~Dl~d 76 (386)
T PLN02427 13 KPLTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTV-P----WSGRIQFHRINIKH 76 (386)
T ss_pred cCcEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccc-c----CCCCeEEEEcCCCC
Confidence 345777 555899999999887643 25899999765433222111000 0 12468888888865
No 353
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=89.28 E-value=3.8 Score=25.71 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=36.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++++|-.| |+|+++..+++.+. .+.+|+++..++...+.........+ ...+++++.+|+.+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~d 67 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG----AKERLKLFKADLLD 67 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC----CCCceEEEeCCCCC
Confidence 456777666 67888888887653 34578777665543332222211111 12467778888765
No 354
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.14 E-value=3.3 Score=24.73 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=36.7
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
++++++-.|+ +|.++..+++.+ ..+.+++.++.++..++.+.+.+...+ .++.++..|+.
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~ 64 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG------TEVRGYAANVT 64 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCC
Confidence 3567887775 455566665543 235689999998876666555554422 34556666654
No 355
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=88.99 E-value=3.6 Score=25.03 Aligned_cols=61 Identities=10% Similarity=0.004 Sum_probs=38.7
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|++. .++..+++++ ..+.+++.++-+++.++...+.++..+ .++.++..|+.+
T Consensus 9 ~~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~ 70 (265)
T PRK07097 9 KGKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG------IEAHGYVCDVTD 70 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCC
Confidence 456777777664 4455554443 245689888988877776666665432 356777777764
No 356
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.98 E-value=2 Score=27.36 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=30.7
Q ss_pred CCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 15 KPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 15 ~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
.++.+|+-.|+| .|..++.+++..+ ..+++++|.+++.++.+++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH
Confidence 467788888865 4445555666642 2369999999988888876
No 357
>KOG1099|consensus
Probab=88.96 E-value=0.75 Score=28.59 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=28.0
Q ss_pred CCeEEEecCCCChHHHHHHHHhCC----C----ceEEEEeCCH
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGS----N----GEVTAVELIP 51 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~----~----~~v~~~D~~~ 51 (88)
-.+++|+|+..|.++..+.+++-. . .+++++|+.+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~ 84 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP 84 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc
Confidence 468999999999999999887533 1 1399999876
No 358
>PRK07035 short chain dehydrogenase; Provisional
Probab=88.93 E-value=3.5 Score=24.78 Aligned_cols=61 Identities=16% Similarity=0.024 Sum_probs=36.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|++ |.++..+++.+ ..+.+|+.++.++...+...+.+...+ .++.++..|..+
T Consensus 7 ~~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~ 68 (252)
T PRK07035 7 TGKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG------GKAEALACHIGE 68 (252)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEcCCCC
Confidence 34567777755 55555555543 235689999998876666555554332 234555555543
No 359
>PRK05854 short chain dehydrogenase; Provisional
Probab=88.91 E-value=4.2 Score=25.67 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=39.7
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+++++-.|+ +++++..+++.+. .+.+|+.+.-+++..+.+.+.+.... ...++.++..|+.+
T Consensus 13 ~gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~----~~~~v~~~~~Dl~d 76 (313)
T PRK05854 13 SGKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV----PDAKLSLRALDLSS 76 (313)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCceEEEEecCCC
Confidence 3556665565 5666667666543 46689999888876666655554322 13457777777754
No 360
>PRK06194 hypothetical protein; Provisional
Probab=88.78 E-value=3.9 Score=25.13 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=38.2
Q ss_pred CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++|-.| |+|+++..+++.+. .+.+|+.+|.+++.++...+.....+ .++.++.+|+.+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG------AEVLGVRTDVSD 66 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC------CeEEEEECCCCC
Confidence 45677555 56777777776543 45689999988766655544443322 356777777764
No 361
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=88.76 E-value=3 Score=27.36 Aligned_cols=46 Identities=28% Similarity=0.432 Sum_probs=35.0
Q ss_pred CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
++++..+.-+|||. |.-.+.-+... ...+++++|+++.-++.|++.
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhc
Confidence 67888999999874 44444444443 567899999999999988875
No 362
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.73 E-value=2.6 Score=25.26 Aligned_cols=43 Identities=33% Similarity=0.501 Sum_probs=32.8
Q ss_pred CCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 15 KPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 15 ~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
.++.+|+..|+|. |.....+++.. +.++++++.++...+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence 6778999999885 66666677765 4689999999877766654
No 363
>PRK07454 short chain dehydrogenase; Provisional
Probab=88.73 E-value=3.5 Score=24.58 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=40.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++++-.| |+|.++..+++.+. .+.+|+.++.++...+...+..+.. ..++.++.+|+.+
T Consensus 5 ~~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~ 66 (241)
T PRK07454 5 SMPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST------GVKAAAYSIDLSN 66 (241)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC------CCcEEEEEccCCC
Confidence 445677777 46777777766542 4568999999887665555544432 2457777888765
No 364
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=88.66 E-value=3.7 Score=24.66 Aligned_cols=60 Identities=12% Similarity=-0.059 Sum_probs=38.5
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG 81 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (88)
++++++-.| |+|.++..+++.+. .+.+|++++.++...+...+.+...+ ..++.++..|+
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~d~ 71 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-----GPQPAIIPLDL 71 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-----CCCceEEEecc
Confidence 566788777 56777777766543 35589999998877666555554433 23445555554
No 365
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.65 E-value=0.92 Score=24.47 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=27.5
Q ss_pred CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 26 GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 26 G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
|.|..++.+++..+ .+++++|.++.-.+.+++.
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh
Confidence 45788889999874 7999999999988888774
No 366
>PRK09186 flagellin modification protein A; Provisional
Probab=88.62 E-value=3.7 Score=24.67 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=38.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|+ +|.++..+++.+. .+.+++.++.+++.++...+.+.... ....+.++..|+.+
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~d 66 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF----KSKKLSLVELDITD 66 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc----CCCceeEEEecCCC
Confidence 3567777775 4556666666542 35689999888877666655553321 12345666777664
No 367
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=88.52 E-value=2.3 Score=27.40 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=31.6
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~ 59 (88)
+.++.+|+-.|+| .|..++.+++.. +. +|+++|.+++..+.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMA--KASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 5678889888875 344555566665 44 79999999988777754
No 368
>PLN02780 ketoreductase/ oxidoreductase
Probab=88.49 E-value=4.7 Score=25.68 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=37.9
Q ss_pred CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
++.++-.|+ +|+++..+++.+ ..+.+|+.++.+++.++...+.+.... ...++..+..|..
T Consensus 53 g~~~lITGA-s~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~----~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGP-TDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY----SKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC----CCcEEEEEEEECC
Confidence 567777774 566666666654 345689999999988777666554322 1234555555554
No 369
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=88.46 E-value=4.3 Score=25.26 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=39.5
Q ss_pred CCeEEEecCCCChHHHHHHHHh---C-CCceEEEEeCCH--------------------------HHHHHHHHhhhhcCC
Q psy8023 17 GAKVLDIGSGSGYLTACFADLV---G-SNGEVTAVELIP--------------------------EVLQFTHYNIQQGNP 66 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~---~-~~~~v~~~D~~~--------------------------~~~~~a~~~~~~~~~ 66 (88)
+..|+|.||-.|..++.++... + ++-++++.|.-+ ...+..++++.+++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g- 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG- 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT-
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC-
Confidence 3479999999999887765432 1 234688888411 13455566665554
Q ss_pred CCCCCcceEEeeCCcccccc
Q psy8023 67 ELLPNIKFEPQTGEGDIQYL 86 (88)
Q Consensus 67 ~~~~~~~~~~~~~d~~~~~~ 86 (88)
....++.++.|+..+.+|
T Consensus 154 --l~~~~v~~vkG~F~dTLp 171 (248)
T PF05711_consen 154 --LLDDNVRFVKGWFPDTLP 171 (248)
T ss_dssp --TSSTTEEEEES-HHHHCC
T ss_pred --CCcccEEEECCcchhhhc
Confidence 235689999998876655
No 370
>PLN02740 Alcohol dehydrogenase-like
Probab=88.43 E-value=3.3 Score=26.83 Aligned_cols=45 Identities=24% Similarity=0.306 Sum_probs=31.4
Q ss_pred cCCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023 13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY 59 (88)
Q Consensus 13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~ 59 (88)
.+.++.+|+-+|+| .|..++.+++.. +. +|+++|.+++.++.+++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH
Confidence 35678899988864 333445555654 34 69999999988887755
No 371
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.37 E-value=1.2 Score=29.35 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 26 GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 26 G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
|.|+.+..++..+..+.+|+++|++++.++..++.
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcC
Confidence 55555555555443456799999999998888763
No 372
>PRK06914 short chain dehydrogenase; Provisional
Probab=88.36 E-value=4.1 Score=24.92 Aligned_cols=62 Identities=15% Similarity=-0.110 Sum_probs=37.8
Q ss_pred CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++.+|-.| |+|.++..+++.+ ..+.+|++++-+++..+...+.....+ ...++.++..|+.+
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~d 65 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN----LQQNIKVQQLDVTD 65 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCceeEEecCCCC
Confidence 34566666 5556666665543 345689999888766655554444322 23467777777765
No 373
>PRK05866 short chain dehydrogenase; Provisional
Probab=88.24 E-value=4.6 Score=25.26 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=38.1
Q ss_pred CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++-.|+ +|+++..+++.+ ..+.+|+.++-+++.++...+.+...+ .++.++..|+.+
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~------~~~~~~~~Dl~d 100 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG------GDAMAVPCDLSD 100 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence 356776665 566667766654 245689999999877766655554322 245666777654
No 374
>KOG3924|consensus
Probab=88.07 E-value=0.92 Score=30.10 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=30.6
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHH
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~ 53 (88)
+.++....|+|+|.|....+.+... ....-+|+++....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~p 228 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKP 228 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCc
Confidence 4677899999999999988888875 45567888875533
No 375
>PRK06139 short chain dehydrogenase; Provisional
Probab=87.83 E-value=5.3 Score=25.58 Aligned_cols=61 Identities=15% Similarity=0.014 Sum_probs=38.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|+ +|.++..+++.+ ..+.+|+.++-+++.++...+.++..+ .++.++..|+.+
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g------~~~~~~~~Dv~d 67 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG------AEVLVVPTDVTD 67 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCC
Confidence 4566776665 455556665543 246689999999888777766665543 345566666653
No 376
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=87.82 E-value=4.3 Score=24.48 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=40.7
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++|-.| |+|.++..+++.+. .+.+|+.++-++..++...+.++..+ .++.++..|+.+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~------~~~~~~~~D~~~ 70 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG------LSAHALAFDVTD 70 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------ceEEEEEccCCC
Confidence 467888777 56777777777543 45689999998877666555554432 345666666654
No 377
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.77 E-value=3.1 Score=24.32 Aligned_cols=43 Identities=26% Similarity=0.162 Sum_probs=26.6
Q ss_pred EEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023 20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63 (88)
Q Consensus 20 vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~ 63 (88)
|--+|+|+=+-++...-.. .+.+|+.+|.+++.++.+++.++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHHHhhhhHHHH
Confidence 4456776433333333332 366899999999999888777654
No 378
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.69 E-value=2.9 Score=26.54 Aligned_cols=46 Identities=24% Similarity=0.159 Sum_probs=32.8
Q ss_pred cCCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023 13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
.+.++.+||-.|+| .|..+..+++.. +.++++++.+++-.+.+++.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALAL 208 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHh
Confidence 35678899988864 344555566664 45799999998887777663
No 379
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.62 E-value=5.5 Score=25.48 Aligned_cols=61 Identities=13% Similarity=-0.041 Sum_probs=39.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.| |+|.++..+++.+ ..+.+|+.++-+++.++...+.++..+ .++.++..|+.+
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g------~~~~~v~~Dv~d 68 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG------GEALAVVADVAD 68 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEecCCC
Confidence 345666666 5566666666654 245689999998877776666665433 356677777654
No 380
>PRK05876 short chain dehydrogenase; Provisional
Probab=87.59 E-value=4.9 Score=24.84 Aligned_cols=61 Identities=8% Similarity=0.036 Sum_probs=38.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++|-.|+ +|.++..+++.+. .+.+|+.++.++..++...+.++..+ .++.++..|+.+
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~------~~~~~~~~Dv~d 66 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG------FDVHGVMCDVRH 66 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEeCCCCC
Confidence 4566776665 4666666666542 35689999988876665555544322 346667777654
No 381
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=87.54 E-value=3.4 Score=25.81 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=35.7
Q ss_pred CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++||-.| |+|+++..+++++- .+.+|++++.++.............. ...+++++.+|+.+
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~ 66 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG----AKERLHLFKANLLE 66 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC----CCCceEEEeccccC
Confidence 45666555 57898888887753 34578887766533222222111111 12467788888765
No 382
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.38 E-value=2.4 Score=28.34 Aligned_cols=43 Identities=19% Similarity=0.057 Sum_probs=31.4
Q ss_pred CCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 15 KPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 15 ~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
-++++|+-+|+|. |......++.. +.+|+.+|.++.....|++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh
Confidence 4688999999994 44555555554 4589999999877766654
No 383
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=87.38 E-value=5.7 Score=25.40 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=38.7
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
-+.+++||-.| |+|+++..+++.+. .+.+|++++-++...+........ ..+++++.+|+.+
T Consensus 7 ~~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~ 69 (353)
T PLN02896 7 ESATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-------GDRLRLFRADLQE 69 (353)
T ss_pred ccCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-------CCeEEEEECCCCC
Confidence 35677888777 57899998888653 345888887766433322221111 2357777777664
No 384
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=87.29 E-value=4.7 Score=24.35 Aligned_cols=61 Identities=11% Similarity=-0.021 Sum_probs=37.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++|-.|+ +|.++..+++.+ ..+.+++.++-++...+...+.++..+ .++.++..|+.+
T Consensus 10 ~~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~ 71 (255)
T PRK06113 10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITS 71 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence 4678888884 455555555543 345678888887776665555444322 245566666654
No 385
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.28 E-value=4.4 Score=24.04 Aligned_cols=60 Identities=17% Similarity=0.057 Sum_probs=37.7
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|++ |.++..+++.+ ..+.+|++++-+++..+...+..... .++.++..|..+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~ 64 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-------GNIHYVVGDVSS 64 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEECCCCC
Confidence 35678888864 66666666654 34668999999887665554443322 245666666653
No 386
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=86.90 E-value=4.8 Score=24.05 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=37.8
Q ss_pred CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++.+|-.| |+|.++..+++.+. .+.+|+.++.++...+...+.+...+ .++.++..|+.+
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~d~~~ 63 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG------GNAQAFACDITD 63 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC------CcEEEEEcCCCC
Confidence 45667666 45677777766543 34589999988876665555554322 356677777654
No 387
>PLN02540 methylenetetrahydrofolate reductase
Probab=86.88 E-value=7.4 Score=27.22 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=50.3
Q ss_pred HHHHHhhcCCCCCeEEEecCCCCh----HHHHHHHHhC------CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceE
Q psy8023 6 ALELLKDNLKPGAKVLDIGSGSGY----LTACFADLVG------SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFE 75 (88)
Q Consensus 6 ~~~~~~~~~~~~~~vlD~g~G~G~----~~~~l~~~~~------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~ 75 (88)
+...+.....-+...+++.-|.|+ .++.++.... +-.|+++.|.+...++.....+...+ ..++=
T Consensus 17 L~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~G-----IrNIL 91 (565)
T PLN02540 17 LFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNG-----IQNIL 91 (565)
T ss_pred HHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCC-----CCEEE
Confidence 344444333445678888888775 3444444332 23589999999999999998888888 77888
Q ss_pred EeeCCccc
Q psy8023 76 PQTGEGDI 83 (88)
Q Consensus 76 ~~~~d~~~ 83 (88)
.+.||.-.
T Consensus 92 ALrGDpp~ 99 (565)
T PLN02540 92 ALRGDPPH 99 (565)
T ss_pred EECCCCCC
Confidence 88888653
No 388
>PRK08703 short chain dehydrogenase; Provisional
Probab=86.66 E-value=4.9 Score=23.96 Aligned_cols=47 Identities=19% Similarity=0.098 Sum_probs=31.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhh
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQ 63 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~ 63 (88)
++++++-.|+ +|.++..+++.+. .+.+|+.++-++...+...+.+..
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~ 52 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVE 52 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHH
Confidence 4567888884 5666666666542 456899999888766655554433
No 389
>PRK08251 short chain dehydrogenase; Provisional
Probab=86.58 E-value=5 Score=23.99 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=39.3
Q ss_pred CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++-.| |+|.++..+++.+. .+.+++.++-++...+...+...... ...++.+...|+.+
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~ 64 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY----PGIKVAVAALDVND 64 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEcCCCC
Confidence 4567666 56777777777653 34589999988877666555444322 13467777777764
No 390
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.46 E-value=0.84 Score=30.40 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=25.0
Q ss_pred CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHH
Q psy8023 18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTH 58 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~ 58 (88)
.+|--+| .|+.++.++-.+. .+.+|+|+|+++..++..+
T Consensus 10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln 49 (436)
T COG0677 10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN 49 (436)
T ss_pred eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHHh
Confidence 4454444 5566555555443 3468999999998876553
No 391
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.37 E-value=4.9 Score=23.67 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=21.1
Q ss_pred eEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023 19 KVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~ 59 (88)
+|--+|. |+.+..++..+. .+.+|+++|++++.++..++
T Consensus 2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 3444544 444444444332 34689999999988776654
No 392
>PRK07478 short chain dehydrogenase; Provisional
Probab=86.23 E-value=5.4 Score=24.02 Aligned_cols=61 Identities=13% Similarity=0.033 Sum_probs=37.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|++ |.++..+++.+. .+.+|+.++-++..++...+.+...+ .++.++..|+.+
T Consensus 5 ~~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~ 66 (254)
T PRK07478 5 NGKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG------GEAVALAGDVRD 66 (254)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCC
Confidence 34567766554 556666655542 35689999988877766665555432 345666666654
No 393
>PRK07814 short chain dehydrogenase; Provisional
Probab=86.19 E-value=5.7 Score=24.18 Aligned_cols=61 Identities=11% Similarity=0.000 Sum_probs=39.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++..|..+
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~ 70 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG------RRAHVVAADLAH 70 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence 456777777 5677777777654 346689999998876665555544322 346666666554
No 394
>PRK07831 short chain dehydrogenase; Provisional
Probab=86.17 E-value=5.6 Score=24.12 Aligned_cols=64 Identities=13% Similarity=0.002 Sum_probs=38.3
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|+....++..+++.+ ..+.+|+.+|.++..++...+.++... ...++.++..|+.+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~ 80 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAEL----GLGRVEAVVCDVTS 80 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhc----CCceEEEEEccCCC
Confidence 45677777753223444444433 235679999988877776666555421 12457777777654
No 395
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=86.15 E-value=1.9 Score=28.75 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=30.0
Q ss_pred CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTH 58 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~ 58 (88)
.++|--+ |.|+.+..++..+....+|+++|++++.++..+
T Consensus 6 ~mkI~vI--GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 6 EVKIAII--GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CCeEEEE--CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 3455555 567777777777656678999999999888776
No 396
>KOG2798|consensus
Probab=85.96 E-value=1.6 Score=28.29 Aligned_cols=46 Identities=24% Similarity=0.194 Sum_probs=33.2
Q ss_pred HHHHHhhcCCC------CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHH
Q psy8023 6 ALELLKDNLKP------GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL 54 (88)
Q Consensus 6 ~~~~~~~~~~~------~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~ 54 (88)
+++.+....++ +.+||--|||.|.++..++... . ++-|-|.|--|+
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G-~--~~qGNEfSy~Ml 185 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG-F--KCQGNEFSYFML 185 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc-c--cccccHHHHHHH
Confidence 45555555544 5689999999999999999884 4 355557777664
No 397
>PRK06949 short chain dehydrogenase; Provisional
Probab=85.77 E-value=5.7 Score=23.87 Aligned_cols=61 Identities=20% Similarity=0.090 Sum_probs=40.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.| |+|.++..+++.+. .+.+|++++.+++.++...+.....+ .++.++..|+.+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~ 69 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG------GAAHVVSLDVTD 69 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCC
Confidence 456777777 66777777777653 35589999998877766655544322 345666666653
No 398
>PRK06181 short chain dehydrogenase; Provisional
Probab=85.65 E-value=6 Score=23.95 Aligned_cols=59 Identities=8% Similarity=-0.072 Sum_probs=36.6
Q ss_pred CeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++|-.| |+|.++..+++.+ ..+.+|++++.++...+...+.+...+ .++.+...|..+
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~ 61 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG------GEALVVPTDVSD 61 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence 3456555 5566777766543 345689999998866665555444332 356667777654
No 399
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=85.65 E-value=3.7 Score=26.46 Aligned_cols=44 Identities=27% Similarity=0.359 Sum_probs=30.7
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~ 59 (88)
+.++.+|+-.|+| .|..+..+++.. +. +|+++|.+++..+.+++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH
Confidence 5677888888864 344455556654 44 69999999988887765
No 400
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=85.51 E-value=6.8 Score=25.08 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=37.5
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhh-hhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNI-QQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++|+-.| |+|+++..+.+.+- .+.+|+++|............. ...+ .....+++++.+|+.+
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Di~d 80 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVS--EEQWSRFIFIQGDIRK 80 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccc--cccCCceEEEEccCCC
Confidence 446776555 78999998888763 3458999997543211111111 1111 0013467888888875
No 401
>PRK06197 short chain dehydrogenase; Provisional
Probab=85.46 E-value=6.8 Score=24.47 Aligned_cols=63 Identities=13% Similarity=-0.009 Sum_probs=39.2
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+++++-.| |+|+++..+++.+. .+.+++.++-+++..+.+.+.+.... ...++.++..|+.+
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~d 78 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT----PGADVTLQELDLTS 78 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCceEEEECCCCC
Confidence 355677555 56777777776543 35588888888776665555444321 12456777777764
No 402
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=85.35 E-value=6.2 Score=23.86 Aligned_cols=61 Identities=20% Similarity=0.119 Sum_probs=41.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++|-.| |+|.++..+++.+. .+.+|+.++-++..++...+.+...+ .++.++..|+.+
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~------~~~~~~~~Dl~d 72 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG------IDALWIAADVAD 72 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEccCCC
Confidence 456788777 67788888877653 35689999988877666665554322 356667777664
No 403
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.33 E-value=3.6 Score=25.44 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=29.0
Q ss_pred CCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023 15 KPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY 59 (88)
Q Consensus 15 ~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~ 59 (88)
.++.+|+-+|+| .|..+..+++.. +. +++++|.+++..+.+++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 467788888764 344445556654 33 48899988877776655
No 404
>KOG1562|consensus
Probab=85.31 E-value=1.6 Score=28.12 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=53.0
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+..+.++-+|-|-|........+ +.-.++..+|++...++..++.+...... ....++.++.||...
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g-y~~~~v~l~iGDG~~ 186 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG-YEGKKVKLLIGDGFL 186 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc-cCCCceEEEeccHHH
Confidence 345678999999999988777776 45668999999999999999998765422 235688888888654
No 405
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=85.26 E-value=6.5 Score=24.06 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=37.2
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|++ |.++..+++.+ ..+.+|+.++.+++..+...+.+...+ .++.++..|+.+
T Consensus 9 ~~k~vlVtGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~ 70 (278)
T PRK08277 9 KGKVAVITGGG-GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG------GEALAVKADVLD 70 (278)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCC
Confidence 45566666654 55566665554 245689999998876665555544322 346666777654
No 406
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=85.22 E-value=5.4 Score=25.17 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=29.9
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCce-EEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGE-VTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~ 59 (88)
+.++.+|+-.|+| .|..+..+++.. +.+ +++++.+++..+.+++
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 4567888888764 333445566665 445 9999998887777654
No 407
>PRK08643 acetoin reductase; Validated
Probab=84.99 E-value=6.4 Score=23.71 Aligned_cols=59 Identities=14% Similarity=-0.004 Sum_probs=36.7
Q ss_pred CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++-.| |+|.++..+++.+. .+.+|+.++.++...+...+.+...+ .++.++..|+.+
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~ 62 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG------GKAIAVKADVSD 62 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCC
Confidence 4556555 55666676666542 45689999988876666655554322 346666777654
No 408
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=84.99 E-value=6.5 Score=23.82 Aligned_cols=56 Identities=13% Similarity=-0.034 Sum_probs=33.5
Q ss_pred eEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 19 KVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
++|-.|++ |.++..+++.+ ..+.+|+.++.++..++.+.+.+... .++.++..|+.
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~Dv~ 58 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY-------GEVYAVKADLS 58 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEcCCC
Confidence 45666644 55666666554 24568888888887766665555432 13455566654
No 409
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=84.91 E-value=0.99 Score=27.53 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=27.1
Q ss_pred HHHHHHhhcCC------CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023 5 RALELLKDNLK------PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 5 ~~~~~~~~~~~------~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
.+++|+..... ...++|||||=.......-...+ .|+.+|+++
T Consensus 34 ~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~f----dvt~IDLns 82 (219)
T PF11968_consen 34 WLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWF----DVTRIDLNS 82 (219)
T ss_pred HHHHHhhhhccccccccccceEEeecccCCCCcccccCce----eeEEeecCC
Confidence 35566655331 12489999998666544433333 499999987
No 410
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=84.87 E-value=4.1 Score=26.07 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=30.9
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~ 59 (88)
+.++.+||-.|+| .|..++.+++.. +. +++++|.+++..+.+++
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 5678889888864 344455566664 34 59999999988777754
No 411
>PRK08862 short chain dehydrogenase; Provisional
Probab=84.81 E-value=6.5 Score=23.63 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=30.7
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQ 63 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~ 63 (88)
++++++-.|++.|. +..++..+ ..+.+|+.++-+++.++...+.+..
T Consensus 4 ~~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~ 51 (227)
T PRK08862 4 KSSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSA 51 (227)
T ss_pred CCeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 45678877777655 44444433 3566899998888877766665544
No 412
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=84.79 E-value=0.65 Score=29.24 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=38.5
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHH
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~ 55 (88)
.++..+..+++++.+.+|-.+|.|.+.+.+... .+++.-|+++.++.
T Consensus 14 ~l~~~i~~~lP~~~~y~EPF~GggaV~i~~~~~----~~~i~~Din~~Lvn 60 (274)
T COG0338 14 KLLDQIIPHLPEGVSYIEPFVGGGAVFINLAAK----KKYILNDINPDLVN 60 (274)
T ss_pred HHHHHHHHhCCCCceeeCCccCcceeeeehhhh----hhhhHhcCCHHHHH
Confidence 466777777787679999999999998888775 25999999998864
No 413
>PRK08589 short chain dehydrogenase; Validated
Probab=84.78 E-value=7 Score=23.98 Aligned_cols=60 Identities=13% Similarity=-0.015 Sum_probs=33.9
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++|-.|++ |.++..+++.+ ..+.+|+.++.++ .++...+.++..+ .++.++..|+.+
T Consensus 5 ~~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~------~~~~~~~~Dl~~ 65 (272)
T PRK08589 5 ENKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIAE-AVSETVDKIKSNG------GKAKAYHVDISD 65 (272)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCcH-HHHHHHHHHHhcC------CeEEEEEeecCC
Confidence 35567766654 45556665544 2466899998884 4444444343322 345666666654
No 414
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=84.66 E-value=6.4 Score=26.21 Aligned_cols=42 Identities=29% Similarity=0.285 Sum_probs=29.2
Q ss_pred CeEEEecCCCChHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhh
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGS--NGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~~ 61 (88)
++||-+|| |..+...++.... ..+|+..|-+++.++.+.+..
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~ 45 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI 45 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc
Confidence 46888999 5555555554322 369999999998877776653
No 415
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.56 E-value=5 Score=25.66 Aligned_cols=43 Identities=21% Similarity=0.165 Sum_probs=29.6
Q ss_pred CCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeC---CHHHHHHHHH
Q psy8023 15 KPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVEL---IPEVLQFTHY 59 (88)
Q Consensus 15 ~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~---~~~~~~~a~~ 59 (88)
.++.+|+-.|+| .|..+..+++.. +.++++++. ++.-.+.+++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHH
Confidence 467788888875 355666667765 447999986 5666666654
No 416
>PRK07576 short chain dehydrogenase; Provisional
Probab=84.19 E-value=7.3 Score=23.77 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=37.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.| |+|.++..+++.+. .+.+|+.++.+++.++...+.....+ .++.++..|+.+
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~ 69 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG------PEGLGVSADVRD 69 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------CceEEEECCCCC
Confidence 456777777 56677776666542 45689999988876655544444322 234566666653
No 417
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=84.10 E-value=5.2 Score=25.71 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=29.7
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~ 59 (88)
+.++.+|+-.|+| .|..+..+++.. +. ++++++.+++..+.+++
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~--G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIR--GASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 5678888888754 333444555554 34 79999998887777644
No 418
>PRK09072 short chain dehydrogenase; Provisional
Probab=83.92 E-value=7.4 Score=23.60 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=36.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++|-.|++ |.++..+++.+ ..+.+|+.++.++..++...+.. .. ..++.++..|..+
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~------~~~~~~~~~D~~d 64 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY------PGRHRWVVADLTS 64 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc------CCceEEEEccCCC
Confidence 34567766654 55555555543 34668999999887766555444 11 2356677777654
No 419
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=83.75 E-value=6 Score=25.49 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=30.3
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~ 59 (88)
++++.+||-.|+| .|..+..+++.. +. +++++|.+++..+.+++
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAA--GASRIIGIDINPDKFELAKK 229 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH
Confidence 5678888888764 334445556654 44 69999999887777654
No 420
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=83.62 E-value=7.4 Score=23.40 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=38.4
Q ss_pred CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++|- ..|+|.++..+++.+. .+.+|+.++.++...+.+.+.+...+ .++.++..|+.+
T Consensus 7 ~~~vlI-tGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~ 67 (262)
T PRK13394 7 GKTAVV-TGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG------GKAIGVAMDVTN 67 (262)
T ss_pred CCEEEE-ECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC------ceEEEEECCCCC
Confidence 456664 4456677777666542 35589999998877666666554432 346677777654
No 421
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=83.45 E-value=7.3 Score=23.19 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=38.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+++++-.| |+|.++..+++.+. .+.+|++++-++.......+.+...+ .++.++..|..+
T Consensus 5 ~~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~ 66 (251)
T PRK12826 5 EGRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG------GKARARQVDVRD 66 (251)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCC
Confidence 346777666 46777777766542 34589999988766555554444332 346777777654
No 422
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.31 E-value=4.1 Score=26.04 Aligned_cols=35 Identities=34% Similarity=0.383 Sum_probs=30.2
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
+.+++.-.|+|+..|+++..+.++ +-.|+++|--+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ 243 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP 243 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccch
Confidence 467889999999999999988876 56799999866
No 423
>KOG1209|consensus
Probab=83.15 E-value=3 Score=25.87 Aligned_cols=35 Identities=26% Similarity=0.134 Sum_probs=27.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHHhCC-CceEEEEeC
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVEL 49 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~ 49 (88)
...+.||-.||..|+++..++..+.. +.+|+++--
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR 40 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATAR 40 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEcc
Confidence 35678999999999999999887643 556777654
No 424
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=82.96 E-value=7.2 Score=24.05 Aligned_cols=47 Identities=11% Similarity=0.148 Sum_probs=30.7
Q ss_pred HhhcCCCCCeEEEecCCCChHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHH
Q psy8023 10 LKDNLKPGAKVLDIGSGSGYLTACFADLVG-----SNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 10 ~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~-----~~~~v~~~D~~~~~~~~a~~ 59 (88)
...++++++. +|-|+|.+...+.+.++ ...++.++=.|...-..|++
T Consensus 15 A~~~V~~gmv---vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS~~t~~~a~~ 66 (228)
T PRK13978 15 VLSQINGDMT---LGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKE 66 (228)
T ss_pred HHHhCCCCCE---EEeCchHHHHHHHHHHHHHhhccCccEEEEeCcHHHHHHHHH
Confidence 4456777764 67778887776544332 12358888888887777766
No 425
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=82.93 E-value=5.6 Score=27.43 Aligned_cols=42 Identities=33% Similarity=0.369 Sum_probs=32.0
Q ss_pred CCCeEEEecCCCC-hHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 16 PGAKVLDIGSGSG-YLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 16 ~~~~vlD~g~G~G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
++.+++-+|+|.- ..++..++.. +.+|+.+|.++..++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 4579999999854 5666667766 4579999999987777765
No 426
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.77 E-value=7.9 Score=23.08 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=35.7
Q ss_pred CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++|-.|+ +|.++..+++.+. .+.+|++++-++...+.....+.. + .++.++..|+.+
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~------~~~~~~~~D~~~ 64 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G------GRAIAVAADVSD 64 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C------CeEEEEECCCCC
Confidence 456666664 4566666665542 356899999998666555444332 1 246667777654
No 427
>PRK12939 short chain dehydrogenase; Provisional
Probab=82.70 E-value=8 Score=23.05 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=39.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.| |+|.++..+++.+. .+.+++.++.+++.++...+.++.. ..++.++..|+.+
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~ 67 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA------GGRAHAIAADLAD 67 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCC
Confidence 356777555 56777777776553 3568899988887666555554432 2357777777764
No 428
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=82.63 E-value=6.2 Score=24.02 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=31.4
Q ss_pred CCCCCeEEEecCCC-ChHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHh
Q psy8023 14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGE-VTAVELIPEVLQFTHYN 60 (88)
Q Consensus 14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~ 60 (88)
..++.+++-.|+|. |..++.+++.. +.+ +++++.+++..+.+++.
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHc
Confidence 56778888887653 55556666765 345 99999988877766553
No 429
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=82.49 E-value=5.9 Score=24.67 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=34.3
Q ss_pred HHHHHHhhcCCC-CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy8023 5 RALELLKDNLKP-GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56 (88)
Q Consensus 5 ~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~ 56 (88)
+++..+...+++ ..+.+|..||.|.+...+. + ..++.-|+++..+..
T Consensus 13 ~l~~~i~~~~p~~~~~yvEPF~Gggsv~l~~~----~-~~~~lND~n~~Li~~ 60 (266)
T TIGR00571 13 SLLPEIKKHLPKNFNCLVEPFVGGGAVFFNLN----P-KRYLLNDINEDLINL 60 (266)
T ss_pred HHHHHHHHhcCcccCEEEEecCCcchhheeec----C-cEEEEecCCHHHHHH
Confidence 456666666665 3689999999999877542 2 248888999987643
No 430
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.49 E-value=10 Score=24.29 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=33.8
Q ss_pred CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy8023 14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTH 58 (88)
Q Consensus 14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~ 58 (88)
+.++.+||-.|+ |.|..++.+++.. +.++++++.+++-.+.++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHH
Confidence 567889988887 4777888888886 458999998887777665
No 431
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=82.34 E-value=9.9 Score=23.89 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=33.6
Q ss_pred CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
+.++.+||-.|. |.|..++.+++.. +.++++++-+++..+.+++
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK 181 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 567888988883 5777888888876 4589999988877776654
No 432
>PRK05650 short chain dehydrogenase; Provisional
Probab=82.01 E-value=9.2 Score=23.32 Aligned_cols=58 Identities=12% Similarity=-0.108 Sum_probs=35.1
Q ss_pred eEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 19 KVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++-.| |+|.++..+++.+ ..+.+|+.++.++...+.+.+.....+ .++.++..|..+
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~ 60 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG------GDGFYQRCDVRD 60 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCC
Confidence 455555 4666666666654 235689999888766665555444322 345666667654
No 433
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=81.58 E-value=8.4 Score=24.11 Aligned_cols=44 Identities=25% Similarity=0.398 Sum_probs=32.3
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
..++..|+-.|+| .|..+..+++.. +.+++.++.+++..+.+++
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARK 204 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 5677788888876 666666667765 4589999998887777643
No 434
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=81.54 E-value=7.9 Score=24.91 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=30.0
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~ 59 (88)
+.++.+|+-.|+| .|..++.+++.. +. +|++++.+++..+.+++
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIA--GASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH
Confidence 5678888888764 333445556654 44 79999998877777654
No 435
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=81.51 E-value=9.4 Score=23.11 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=34.5
Q ss_pred EEEecCCCChHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 20 VLDIGSGSGYLTACFADLVG-----SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 20 vlD~g~G~G~~~~~l~~~~~-----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++-.|++ ++++..+++.+. .+.+|+.++.+++.++.+.+.++... ...++.++..|+.+
T Consensus 3 vlItGas-~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~----~~~~v~~~~~Dl~~ 66 (256)
T TIGR01500 3 CLVTGAS-RGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAER----SGLRVVRVSLDLGA 66 (256)
T ss_pred EEEecCC-CchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcC----CCceEEEEEeccCC
Confidence 4555644 555555555442 35678888888777766665554321 12356667777654
No 436
>PRK05875 short chain dehydrogenase; Provisional
Probab=81.47 E-value=9.7 Score=23.23 Aligned_cols=63 Identities=13% Similarity=-0.006 Sum_probs=38.2
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++|-.|+ +|.++..+++.+. .+.+|++++-++...+...+.+.... ...++.++..|+.+
T Consensus 6 ~~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~~ 69 (276)
T PRK05875 6 QDRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK----GAGAVRYEPADVTD 69 (276)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc----CCCceEEEEcCCCC
Confidence 4567887774 4566777766542 35689999988766554444443322 12456677777654
No 437
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=81.26 E-value=8.3 Score=24.28 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=32.0
Q ss_pred cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
.+.++.+||..|+|. |...+.+++.. +.+++++..+++..+.+++
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE 201 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH
Confidence 356778898888653 66667777775 5689988888777666543
No 438
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=81.06 E-value=9.7 Score=22.93 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=37.3
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++++|-.| |+|.++..+++.+. .+.+++.++.++..++...+.++..+ .++.++..|+.+
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~ 69 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG------IKAHAAPFNVTH 69 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEecCCCC
Confidence 456677777 55666666666543 35689999988776666555544322 245556666553
No 439
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=80.80 E-value=10 Score=22.91 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=37.4
Q ss_pred CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.+|-.| |+|.++..+++.+. .+.+++.+|.++...+...+...... ...++.++..|+.+
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY----GEGMAYGFGADATS 64 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc----CCceeEEEEccCCC
Confidence 4577777 56777777766542 45689999988766655544443221 01356777777654
No 440
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=80.74 E-value=0.65 Score=24.68 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=12.4
Q ss_pred EEEecCCCChHHHHHHH
Q psy8023 20 VLDIGSGSGYLTACFAD 36 (88)
Q Consensus 20 vlD~g~G~G~~~~~l~~ 36 (88)
-+|+|||.|..-....+
T Consensus 6 NIDIGcG~GNTmda~fR 22 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFR 22 (124)
T ss_pred ccccccCCCcchhhhhh
Confidence 58999999986544433
No 441
>PRK08303 short chain dehydrogenase; Provisional
Probab=80.66 E-value=12 Score=23.68 Aligned_cols=34 Identities=15% Similarity=0.005 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI 50 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~ 50 (88)
++++++-.|++. +++..+++.+ ..+.+|+.++.+
T Consensus 7 ~~k~~lITGgs~-GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 7 RGKVALVAGATR-GAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecc
Confidence 456788888554 4566666654 245688888776
No 442
>PLN02384 ribose-5-phosphate isomerase
Probab=80.63 E-value=9.3 Score=24.11 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=30.0
Q ss_pred HhhcCCCCCeEEEecCCCChHHHHHHH----HhCCC-ce-EEEEeCCHHHHHHHHH
Q psy8023 10 LKDNLKPGAKVLDIGSGSGYLTACFAD----LVGSN-GE-VTAVELIPEVLQFTHY 59 (88)
Q Consensus 10 ~~~~~~~~~~vlD~g~G~G~~~~~l~~----~~~~~-~~-v~~~D~~~~~~~~a~~ 59 (88)
...++++++. +|-|+|.+...+.+ +.... .+ ++++=.|......|++
T Consensus 43 A~~~V~~gmv---VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~T~~~a~~ 95 (264)
T PLN02384 43 AVEFVESGMV---LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVS 95 (264)
T ss_pred HHHhccCCCE---EEecchHHHHHHHHHHHHhhhhccccceEEEcCcHHHHHHHHH
Confidence 4456777764 67777877665544 33211 22 8888888887777766
No 443
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=80.58 E-value=4 Score=28.70 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=26.9
Q ss_pred CCeEEEecCCCChHHHHHHHHh------CC-----CceEEEEeCCH
Q psy8023 17 GAKVLDIGSGSGYLTACFADLV------GS-----NGEVTAVELIP 51 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~------~~-----~~~v~~~D~~~ 51 (88)
.-+|+|+|=|+|.......+.+ .+ ..+++++|..|
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 3589999999999888777655 12 35899999754
No 444
>PLN02827 Alcohol dehydrogenase-like
Probab=80.06 E-value=9.5 Score=24.81 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=29.4
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~ 59 (88)
+.++.+|+-.|+| .|...+.+++.. +. .++++|.+++..+.+++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH
Confidence 5678889888764 333444455554 33 58899988877777654
No 445
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=80.02 E-value=12 Score=23.35 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=32.9
Q ss_pred CCCCCeEEEec--CCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIG--SGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g--~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
+.++.+||-.| .+.|..++.+++.. +.++++++.+++..+.+++
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 56778888877 45777777788876 5589999988877666654
No 446
>PRK07791 short chain dehydrogenase; Provisional
Probab=79.89 E-value=12 Score=23.26 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=21.2
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCH
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIP 51 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~ 51 (88)
+++++|-.|++. .++..+++.+ ..+.+++.++.+.
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~ 40 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGV 40 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCc
Confidence 456777777654 4455555543 2456788877654
No 447
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.79 E-value=10 Score=22.52 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=39.0
Q ss_pred CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++-.| |+|.++..+++++ ..+.+|+.++.++...+...+..... ..++.++..|..+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~ 67 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY------GVKVVIATADVSD 67 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCeEEEEECCCCC
Confidence 45677777 5778888877754 34668999998876655544444332 2356777777654
No 448
>PRK10904 DNA adenine methylase; Provisional
Probab=79.65 E-value=4.5 Score=25.32 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~ 56 (88)
+++..+...++...+.+|..+|.|.+...+ .+ .+++.-|+++..+..
T Consensus 16 ~l~~~i~~~~P~~~~yvEPF~GggaV~l~~----~~-~~~ilND~n~~Lin~ 62 (271)
T PRK10904 16 PLLDDIKRHLPKGECLIEPFVGAGSVFLNT----DF-SRYILADINSDLISL 62 (271)
T ss_pred HHHHHHHHhCCCCCcEEeccCCcceeeEec----CC-CeEEEEeCCHHHHHH
Confidence 456666666766678999999999986643 22 357888999987653
No 449
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.54 E-value=11 Score=22.59 Aligned_cols=60 Identities=15% Similarity=0.024 Sum_probs=38.7
Q ss_pred CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++|-.| |+|.++..+++++. .+.+++.++.++...+...+..+..+ .++.++..|..+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~ 64 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG------GKAIGVAMDVTD 64 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCC
Confidence 45566555 56788888877653 35589999998877666555544322 456667777654
No 450
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=79.45 E-value=11 Score=22.73 Aligned_cols=60 Identities=12% Similarity=-0.009 Sum_probs=34.8
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++++|-.|++ |.++..+++.+ ..+.+++.++.++ ..+.+.+.....+ .++.++..|+.+
T Consensus 14 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~D~~~ 74 (258)
T PRK06935 14 DGKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEG------RKVTFVQVDLTK 74 (258)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcC------CceEEEEcCCCC
Confidence 46677777764 45556665554 2456788887763 3444444443322 346677777654
No 451
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=79.41 E-value=10 Score=24.89 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=26.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHH
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPE 52 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~ 52 (88)
..+++|+-.| |+|.++..+++.+ ..+.+|++++-++.
T Consensus 58 ~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 58 PKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 3466788777 7899988887764 23557888887664
No 452
>PRK05855 short chain dehydrogenase; Validated
Probab=79.25 E-value=17 Score=24.63 Aligned_cols=60 Identities=15% Similarity=0.005 Sum_probs=39.9
Q ss_pred CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+.++|-.| |+|+++..+++.+. .+.+|+.++.++...+...+.++..+ .++.++..|+.+
T Consensus 315 ~~~~lv~G-~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~ 375 (582)
T PRK05855 315 GKLVVVTG-AGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG------AVAHAYRVDVSD 375 (582)
T ss_pred CCEEEEEC-CcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEcCCCC
Confidence 34566555 46777777776653 45689999998877766655555433 356777777765
No 453
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.18 E-value=12 Score=22.84 Aligned_cols=35 Identities=9% Similarity=0.038 Sum_probs=23.8
Q ss_pred CCCeEEEecCCC-ChHHHHHHHHhC-CCceEEEEeCC
Q psy8023 16 PGAKVLDIGSGS-GYLTACFADLVG-SNGEVTAVELI 50 (88)
Q Consensus 16 ~~~~vlD~g~G~-G~~~~~l~~~~~-~~~~v~~~D~~ 50 (88)
.+++++-.|.+. +.++..+++.+. .+.+|+.++.+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 467888888773 677777776653 45578777543
No 454
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.04 E-value=11 Score=22.55 Aligned_cols=59 Identities=10% Similarity=-0.030 Sum_probs=35.3
Q ss_pred CeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++|-.|+ +|.++..+++.+ ..+.++++++-++...+...+.....+ .++.++..|+.+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~ 62 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG------LALRVEKLDLTD 62 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcceEEEeeCCC
Confidence 35666665 566667666654 245689998887765555544443322 246666666654
No 455
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=79.01 E-value=14 Score=23.49 Aligned_cols=59 Identities=12% Similarity=-0.025 Sum_probs=35.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCC---ceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSN---GEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++||-.| |+|+++..+++.+... .+|+.++-++.......+. .. ..+++++.+|+.+
T Consensus 3 ~~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~---~~-----~~~~~~v~~Dl~d 64 (324)
T TIGR03589 3 NNKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK---FP-----APCLRFFIGDVRD 64 (324)
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHH---hC-----CCcEEEEEccCCC
Confidence 356677555 5788888888765322 4788888665432222111 11 1357778888765
No 456
>PRK07326 short chain dehydrogenase; Provisional
Probab=79.00 E-value=11 Score=22.32 Aligned_cols=60 Identities=13% Similarity=0.015 Sum_probs=38.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.++-.| |+|.++..+++.+. .+.+|++++.++...+...+.+.. ..++.++.+|+.+
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~D~~~ 65 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-------KGNVLGLAADVRD 65 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-------cCcEEEEEccCCC
Confidence 356788777 57777777777652 356899999888666555444332 1345666666553
No 457
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=78.79 E-value=21 Score=25.45 Aligned_cols=62 Identities=13% Similarity=-0.008 Sum_probs=38.0
Q ss_pred CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++|-.| |+|+++..+++.+. .+.+|+.++.++...+...+.+.... ...++.++..|+.+
T Consensus 414 gkvvLVTG-asggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~----~~~~~~~v~~Dvtd 476 (676)
T TIGR02632 414 RRVAFVTG-GAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQF----GAGRAVALKMDVTD 476 (676)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhc----CCCcEEEEECCCCC
Confidence 45666555 45677777766543 46789999999877666555443211 12345566677654
No 458
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.74 E-value=12 Score=23.42 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=27.4
Q ss_pred CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023 18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
.+|.-+|+|.=+.++...-.. .+.+|+.+|.+++.++.+++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHH
Confidence 356777776444333322221 3458999999999888887654
No 459
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=78.62 E-value=14 Score=23.26 Aligned_cols=44 Identities=20% Similarity=0.094 Sum_probs=28.8
Q ss_pred CCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 15 KPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 15 ~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
.++.+++-+|+| .|..+..+++..+ -..++++|.+++.++.+..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATG 187 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhh
Confidence 356678888765 4556666677652 2247788988877776654
No 460
>PRK06138 short chain dehydrogenase; Provisional
Probab=78.61 E-value=12 Score=22.41 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=36.6
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|+ +|.++..+++.+. .+.+++.++-+++..+...+... . ..++.++..|+.+
T Consensus 4 ~~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~------~~~~~~~~~D~~~ 64 (252)
T PRK06138 4 AGRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A------GGRAFARQGDVGS 64 (252)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c------CCeEEEEEcCCCC
Confidence 3556777776 4666666666532 35689999887765555444433 1 2346677777654
No 461
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=78.59 E-value=4.7 Score=26.98 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=23.4
Q ss_pred eEEEecCCCChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHh
Q psy8023 19 KVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~ 60 (88)
+|--+|+| +.+...+..+.. +-+|+++|+++.-++..++.
T Consensus 2 kI~viGtG--YVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g 42 (414)
T COG1004 2 KITVIGTG--YVGLVTGACLAELGHEVVCVDIDESKVELLNKG 42 (414)
T ss_pred ceEEECCc--hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCC
Confidence 34445555 443333332222 34799999999888766554
No 462
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=78.52 E-value=14 Score=23.29 Aligned_cols=61 Identities=8% Similarity=-0.122 Sum_probs=37.5
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.| |+|+++..+++.+. .+.+|+.++-++...+.+.+.+... ..++.++..|+.+
T Consensus 5 ~~k~vlVTG-as~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~ 66 (322)
T PRK07453 5 AKGTVIITG-ASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP------PDSYTIIHIDLGD 66 (322)
T ss_pred CCCEEEEEc-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc------CCceEEEEecCCC
Confidence 345667666 45677777766543 3568999988876655554444321 2356777777654
No 463
>PRK07024 short chain dehydrogenase; Provisional
Probab=78.44 E-value=12 Score=22.59 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=35.6
Q ss_pred CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++-.|+ +|.++..+++.+. .+.+|+.++.+++.++...+.... ..++.++..|+.+
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~ 61 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK-------AARVSVYAADVRD 61 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc-------CCeeEEEEcCCCC
Confidence 45665564 6666777666543 356899999888766554443321 1156777777764
No 464
>KOG0023|consensus
Probab=78.31 E-value=14 Score=24.33 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=32.4
Q ss_pred CCCCCeEEEec-CCCChHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy8023 14 LKPGAKVLDIG-SGSGYLTACFADLVGSNGEVTAVELIPEVLQFT 57 (88)
Q Consensus 14 ~~~~~~vlD~g-~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a 57 (88)
+.+++++--+| +|.|.+++.+++.+ +.+|+++|-+...-+.+
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea 221 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEA 221 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHH
Confidence 46888887777 45899999999998 56999999986443333
No 465
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=77.88 E-value=5.1 Score=25.53 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=27.9
Q ss_pred CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
..+++.+.|+.+|||.++..+-.... .|++-|+..
T Consensus 25 ~~s~k~f~DiFaGtGVV~~~fkk~~n---~iiaNDle~ 59 (330)
T COG3392 25 DLSGKIFCDIFAGTGVVGRFFKKAGN---KIIANDLEY 59 (330)
T ss_pred ccCCCeeeeeccCccHHHHHHHHhcc---hhhhchHHH
Confidence 45677899999999999998877743 588888744
No 466
>PRK08267 short chain dehydrogenase; Provisional
Probab=77.85 E-value=13 Score=22.48 Aligned_cols=56 Identities=11% Similarity=-0.068 Sum_probs=33.0
Q ss_pred eEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 19 KVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++|-.|+ +|.++..+++.+ ..+.+|+.++-++..++...+... ..++.++..|+.+
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~~D~~~ 59 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--------AGNAWTGALDVTD 59 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--------CCceEEEEecCCC
Confidence 4565554 456666666543 235588888888766555544322 1346666666654
No 467
>PRK07201 short chain dehydrogenase; Provisional
Probab=77.76 E-value=21 Score=24.89 Aligned_cols=60 Identities=22% Similarity=0.016 Sum_probs=38.2
Q ss_pred CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++-.| |+|.++..+++.+ ..+.+|+.++-+++.++...+.....+ .++.++..|+.+
T Consensus 371 ~k~vlItG-as~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~ 431 (657)
T PRK07201 371 GKVVLITG-ASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG------GTAHAYTCDLTD 431 (657)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEecCCC
Confidence 44566555 5567777776654 245689999998877766655554422 356667777654
No 468
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=77.65 E-value=14 Score=22.88 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCC-------------hHHHHHHHHhCCC-ceEEEEeC-CHHHHHHHHHh
Q psy8023 5 RALELLKDNLKPGAKVLDIGSGSG-------------YLTACFADLVGSN-GEVTAVEL-IPEVLQFTHYN 60 (88)
Q Consensus 5 ~~~~~~~~~~~~~~~vlD~g~G~G-------------~~~~~l~~~~~~~-~~v~~~D~-~~~~~~~a~~~ 60 (88)
.+++........|..++|+|++.. .-...+.+..... ...+.+|. +++.++.+-+.
T Consensus 25 ~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~ 95 (258)
T cd00423 25 KALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKA 95 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHh
Confidence 445555555678999999999887 2223333333221 23468885 45555655544
No 469
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=77.48 E-value=11 Score=24.82 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=34.2
Q ss_pred CCCCCeEEEec-CC-CChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHh
Q psy8023 14 LKPGAKVLDIG-SG-SGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 14 ~~~~~~vlD~g-~G-~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~ 60 (88)
+.++.+|+-+| +| .|..++.+++..+. ..+++++|.+++.++.+++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 45677888887 33 66677777776421 23799999999998888875
No 470
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.45 E-value=18 Score=23.98 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=28.4
Q ss_pred eEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023 19 KVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~ 59 (88)
+|+-+|+ |.++..+++.+. .+.+++.+|.+++.++.+++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 4555554 788888888653 35689999999987776654
No 471
>PRK12829 short chain dehydrogenase; Provisional
Probab=77.43 E-value=13 Score=22.36 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=36.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 15 KPGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 15 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+++++|-.|+. |.++..+++++ ..+.+|++++-++...+...+.... . ++.++..|+.+
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-------~-~~~~~~~D~~~ 69 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-------A-KVTATVADVAD 69 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------C-ceEEEEccCCC
Confidence 356788877765 66666666653 2456899999887655544333221 1 45566666553
No 472
>PLN02253 xanthoxin dehydrogenase
Probab=77.40 E-value=14 Score=22.64 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=36.8
Q ss_pred CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++|-.| |+|.++..+++.+. .+.+|+.++.++...+...+.+.. ..++.++..|+.+
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~d 77 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-------EPNVCFFHCDVTV 77 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-------CCceEEEEeecCC
Confidence 45677666 56777777776553 456899999887655444333311 2356677777654
No 473
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=77.37 E-value=4.7 Score=29.34 Aligned_cols=43 Identities=35% Similarity=0.362 Sum_probs=35.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (88)
.++.++|-..|.|.+....++. ++.|+++|++|.+.-+.+..+
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRL---G~~v~AvelnPvAylfLKavl 132 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRL---GLEVVAVELNPVAYLFLKAVL 132 (875)
T ss_pred cCCcccccccCCCccchHHHhc---CceeEEEecccHHHHHHHHHH
Confidence 4568999999999998887776 468999999998876665554
No 474
>KOG4169|consensus
Probab=77.29 E-value=14 Score=23.18 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=37.1
Q ss_pred CCeEEEecCCCChHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADL-VGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~-~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++.++-.|. .|+++..++.. ..++..+.++|.+.+..+.-.+.-..+ +...+-|+..|.++
T Consensus 5 GKna~vtgg-agGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~-----p~~~v~F~~~DVt~ 66 (261)
T KOG4169|consen 5 GKNALVTGG-AGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAIN-----PSVSVIFIKCDVTN 66 (261)
T ss_pred CceEEEecC-CchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccC-----CCceEEEEEecccc
Confidence 566666663 44444444433 345678999998887744333332333 47788899888765
No 475
>KOG2918|consensus
Probab=77.17 E-value=14 Score=24.07 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=34.6
Q ss_pred HHHhhcCCCCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHH
Q psy8023 8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFT 57 (88)
Q Consensus 8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a 57 (88)
..+.........|+.+|||.=.....+.... .+...++=+|.++......
T Consensus 79 ~~Fl~~~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 79 RAFLEQTDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred HHHHHhcCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 3333334456689999999988888877764 2456788888887655555
No 476
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=76.88 E-value=23 Score=24.99 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=46.4
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG--SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.+++||- ..|+|.++..++++.- ...+++..|.++-.+...++.+.... +..++.+..+|..+
T Consensus 249 ~gK~vLV-TGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~----~~~~~~~~igdVrD 313 (588)
T COG1086 249 TGKTVLV-TGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKF----PELKLRFYIGDVRD 313 (588)
T ss_pred CCCEEEE-eCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhC----CCcceEEEeccccc
Confidence 4556664 4577888888877642 34689999999988888888877654 35678888888875
No 477
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=76.88 E-value=16 Score=23.11 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=33.6
Q ss_pred CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
+.++.+|+-.|+ |.|..++.+++.. +.++++++.+++..+.+++
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 567889988885 5677777788876 5589998888877776665
No 478
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=76.61 E-value=12 Score=23.76 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=29.9
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCce-EEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGE-VTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~ 59 (88)
..++.+|+-.|+| .|..++.+++.. +.+ +++++.+++..+.+++
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~ 203 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKS 203 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH
Confidence 4577888888864 344555566665 344 7899998887777654
No 479
>PRK06153 hypothetical protein; Provisional
Probab=76.59 E-value=6.1 Score=26.34 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=24.8
Q ss_pred CCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCC
Q psy8023 16 PGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELI 50 (88)
Q Consensus 16 ~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~ 50 (88)
.+.+|+-+||| +|......+.+. .-.+++.+|.+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~-GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKT-PVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHc-CCCEEEEECCC
Confidence 35689999987 777666666665 45689999865
No 480
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=76.12 E-value=25 Score=24.86 Aligned_cols=67 Identities=12% Similarity=-0.052 Sum_probs=40.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCC---CCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNP---ELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~d~~~ 83 (88)
++++|+-.| |+|+++..+++.+ ..+.+|++++-+.+..+...+.+..... ......++.++.+|+.+
T Consensus 79 ~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD 149 (576)
T PLN03209 79 DEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK 149 (576)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC
Confidence 455666555 5677888877665 3456899999888766554443322110 00012457888888875
No 481
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=76.08 E-value=12 Score=23.49 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=29.1
Q ss_pred CCCeEEEecCCC-ChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023 16 PGAKVLDIGSGS-GYLTACFADLVGSNG-EVTAVELIPEVLQFTHY 59 (88)
Q Consensus 16 ~~~~vlD~g~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~ 59 (88)
++.+||..|+|. |..++.+++.. +. ++++++.+++..+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH
Confidence 677888877653 55666667765 34 68999988877765544
No 482
>PRK09135 pteridine reductase; Provisional
Probab=76.03 E-value=14 Score=21.95 Aligned_cols=62 Identities=8% Similarity=-0.124 Sum_probs=37.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCC-HHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELI-PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++++|-.|+ +|.++..+++++. .+.+|++++-+ +...+...+.+.... ...+.++..|+.+
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~ 68 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALR-----PGSAAALQADLLD 68 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-----CCceEEEEcCCCC
Confidence 4467888885 6777777777653 45689998864 333343333333322 2346677777654
No 483
>PRK07774 short chain dehydrogenase; Provisional
Probab=75.90 E-value=14 Score=22.03 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=38.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.| |+|.++..+++.+ ..+.+++.++-++...+...+.+...+ .++.++..|+.+
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~ 66 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG------GTAIAVQVDVSD 66 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCC
Confidence 456677666 6677777777754 245689999988766655555444322 245566666654
No 484
>PRK06198 short chain dehydrogenase; Provisional
Probab=75.81 E-value=15 Score=22.15 Aligned_cols=61 Identities=13% Similarity=-0.020 Sum_probs=36.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHhC-CCce-EEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVG-SNGE-VTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|+ +|.++..+++.+. .+.+ |+.++.++...+...+.+... ..++.++..|..+
T Consensus 5 ~~k~vlItGa-~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~ 67 (260)
T PRK06198 5 DGKVALVTGG-TQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL------GAKAVFVQADLSD 67 (260)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEccCCC
Confidence 4567777774 5667777766542 3456 888888776555444333322 2345666666653
No 485
>PLN02650 dihydroflavonol-4-reductase
Probab=75.50 E-value=18 Score=23.06 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=36.6
Q ss_pred CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++|| +-.|+|+++..+++.+. .+.+|++++.++.............+ ...+++++.+|+.+
T Consensus 5 ~k~iL-VTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~v~~Dl~d 67 (351)
T PLN02650 5 KETVC-VTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPG----ATTRLTLWKADLAV 67 (351)
T ss_pred CCEEE-EeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccC----CCCceEEEEecCCC
Confidence 34555 55588999999888763 34578888776544433322221111 12357778888765
No 486
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=75.42 E-value=11 Score=25.23 Aligned_cols=38 Identities=26% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHH
Q psy8023 15 KPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVL 54 (88)
Q Consensus 15 ~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~ 54 (88)
..+++|+-+|+|. |......++.+ +.+|+.+|.++...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRA 231 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhH
Confidence 4688999999885 44444455544 56899999988543
No 487
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.39 E-value=20 Score=23.36 Aligned_cols=35 Identities=23% Similarity=0.141 Sum_probs=21.6
Q ss_pred CCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCH
Q psy8023 16 PGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIP 51 (88)
Q Consensus 16 ~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (88)
..++|+-+||| .|......+... .-++++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 35689999997 344333333332 235899999864
No 488
>KOG1205|consensus
Probab=75.30 E-value=19 Score=23.03 Aligned_cols=64 Identities=17% Similarity=0.038 Sum_probs=43.3
Q ss_pred CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
.++.|+-=||..|.-.....+....+.+++-+.-..+-++...+..+... ...++..+..|+.+
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~----~~~~v~~~~~Dvs~ 74 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLG----SLEKVLVLQLDVSD 74 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhC----CcCccEEEeCccCC
Confidence 56788888887776433333334456678888888888888866666655 22268888888876
No 489
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=75.26 E-value=16 Score=22.24 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=32.9
Q ss_pred cCCCChHHHHHHHHh---CCCceEEEEeCCH---HHHHHHHHhhhhcCCCC-C---CCcceEEeeCCcccc
Q psy8023 24 GSGSGYLTACFADLV---GSNGEVTAVELIP---EVLQFTHYNIQQGNPEL-L---PNIKFEPQTGEGDIQ 84 (88)
Q Consensus 24 g~G~G~~~~~l~~~~---~~~~~v~~~D~~~---~~~~~a~~~~~~~~~~~-~---~~~~~~~~~~d~~~~ 84 (88)
.-+||+++.++...+ .+..+|+++--++ ...+...+.+...+... . ...+++++.+|+.+.
T Consensus 2 TGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~ 72 (249)
T PF07993_consen 2 TGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQP 72 (249)
T ss_dssp E-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSG
T ss_pred cCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEecccccc
Confidence 357899988887653 2223788886654 34444444444332110 0 157999999999873
No 490
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=75.12 E-value=15 Score=21.92 Aligned_cols=58 Identities=9% Similarity=-0.054 Sum_probs=36.3
Q ss_pred eEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 19 KVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++|-.| |+|.++..+++.+ ..+.+|++++-++...+...+.....+ .++.++..|..+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~ 61 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG------GSVIYLVADVTK 61 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEECCCCC
Confidence 455555 6677777777764 235589999988766655555443322 356666666654
No 491
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=75.08 E-value=14 Score=24.23 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=28.0
Q ss_pred CCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 17 GAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 17 ~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
+.+|+-+|+| .|..+...+... +.+|+.+|.+++..+.+.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDA 208 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHH
Confidence 4568888887 445555556555 4479999999876665543
No 492
>PRK06720 hypothetical protein; Provisional
Probab=74.99 E-value=14 Score=21.39 Aligned_cols=60 Identities=17% Similarity=0.017 Sum_probs=34.0
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD 82 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (88)
+++.++-.|.+. .++..++..+ ..+.+++.+|.++...+.+.+.+...+ ....++..|..
T Consensus 15 ~gk~~lVTGa~~-GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~ 75 (169)
T PRK06720 15 AGKVAIVTGGGI-GIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG------GEALFVSYDME 75 (169)
T ss_pred CCCEEEEecCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCC
Confidence 456677767554 4444444433 245689999988876665544444322 23445566654
No 493
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=74.62 E-value=18 Score=22.81 Aligned_cols=45 Identities=36% Similarity=0.555 Sum_probs=29.1
Q ss_pred CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023 14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59 (88)
Q Consensus 14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (88)
.+++.+|+..|+| .|..++.+++..+ ..++++++.++...+.+++
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Confidence 5567788887664 3556666777652 1368888877766655443
No 494
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=74.58 E-value=16 Score=22.06 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=32.9
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++++|-.|+ ++.++..+++.+ ..+.+|+.++.++. +...+.....+ .++.++..|+.+
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~------~~~~~~~~Dl~~ 66 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG------RKFHFITADLIQ 66 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC------CeEEEEEeCCCC
Confidence 4677887775 455666666553 34567888776542 22233333222 356667777654
No 495
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=74.37 E-value=8.7 Score=26.20 Aligned_cols=43 Identities=16% Similarity=0.023 Sum_probs=26.4
Q ss_pred CeEEEecCCCChHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHh
Q psy8023 18 AKVLDIGSGSGYLTACFADL-VGSNGEVTAVELIPEVLQFTHYN 60 (88)
Q Consensus 18 ~~vlD~g~G~G~~~~~l~~~-~~~~~~v~~~D~~~~~~~~a~~~ 60 (88)
++|.-+|+|.-+......-. .+.+.+|+++|++++.++..++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g 45 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSD 45 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcC
Confidence 35666766655544443222 12246799999999888775543
No 496
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=74.33 E-value=16 Score=21.87 Aligned_cols=58 Identities=19% Similarity=0.055 Sum_probs=33.5
Q ss_pred eEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 19 KVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 19 ~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
+++-.| |+|.++..+++.+ ..+.+++.++-++...+...+.+...+ .++.++..|+.+
T Consensus 2 ~~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~ 60 (254)
T TIGR02415 2 VALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG------GKAVAYKLDVSD 60 (254)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEcCCCC
Confidence 345555 4566666665544 245678888887765555444444322 346666777654
No 497
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=74.18 E-value=16 Score=21.77 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=21.8
Q ss_pred CCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCC
Q psy8023 16 PGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELI 50 (88)
Q Consensus 16 ~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~ 50 (88)
.+.+|+-+||| .|......+... .-++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 45689999988 455444433333 23579999976
No 498
>PRK08226 short chain dehydrogenase; Provisional
Probab=73.98 E-value=17 Score=21.97 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=35.1
Q ss_pred CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
++++++-.|+ +|.++..+++.+ ..+.+|+.++-++...+.+.+. ... ..++.++..|+.+
T Consensus 5 ~~~~~lItG~-s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-~~~------~~~~~~~~~Dl~~ 65 (263)
T PRK08226 5 TGKTALITGA-LQGIGEGIARVFARHGANLILLDISPEIEKLADEL-CGR------GHRCTAVVADVRD 65 (263)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-HHh------CCceEEEECCCCC
Confidence 3567776665 566666666654 2456899998887544333332 221 2345666777654
No 499
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=73.69 E-value=22 Score=23.18 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=31.8
Q ss_pred EEEecCCCChHHHHHHHHhCCC--c-eEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023 20 VLDIGSGSGYLTACFADLVGSN--G-EVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI 83 (88)
Q Consensus 20 vlD~g~G~G~~~~~l~~~~~~~--~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (88)
|+-+|+ |..+..+++.+... . +++..|.+.+..+...+.+ . ..++++...|+.+
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~---~-----~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL---L-----GDRVEAVQVDVND 57 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-----T-----TTTEEEEE--TTT
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc---c-----ccceeEEEEecCC
Confidence 456777 77777766654332 2 7999999997776665543 2 3467777777654
No 500
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=73.39 E-value=6.1 Score=24.60 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=33.7
Q ss_pred EEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023 21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY 85 (88)
Q Consensus 21 lD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (88)
+....|+-.++..+++. .-+.+.+|+.+.-.+..++++.. ..+++++..|..+++
T Consensus 62 l~~YPGSP~ia~~llR~---qDrl~l~ELHp~d~~~L~~~~~~-------~~~v~v~~~DG~~~l 116 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE---QDRLVLFELHPQDFEALKKNFRR-------DRRVRVHHRDGYEGL 116 (245)
T ss_dssp --EEE-HHHHHHHHS-T---TSEEEEE--SHHHHHHHTTS--T-------TS-EEEE-S-HHHHH
T ss_pred cCcCCCCHHHHHHhCCc---cceEEEEecCchHHHHHHHHhcc-------CCccEEEeCchhhhh
Confidence 66777777776666554 45899999999999888887765 458999999987743
Done!