RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8023
(88 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 74.3 bits (183), Expect = 4e-18
Identities = 33/51 (64%), Positives = 40/51 (78%), Gaps = 2/51 (3%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
M+A LELL+ LKPG +VL+IGSGSGYLTACFA +VG G V ++E IPE
Sbjct: 61 MHAMMLELLE--LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPE 109
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 64.5 bits (157), Expect = 2e-14
Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
M A ELL+ LKPG KVL+IG+GSGY A A++VG +G V ++E IPE+
Sbjct: 65 MVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPEL 114
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 60.7 bits (148), Expect = 7e-13
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
M AR L+LL+ LKPG +VL+IG+GSGY A A LV G V ++E I E+ + N+
Sbjct: 60 MVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNL 114
Query: 62 QQ 63
+
Sbjct: 115 ET 116
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 56.6 bits (137), Expect = 3e-11
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
M A ELL +LK G KVL+IG+GSGY A A++VG +G+V +E IPE+ + +
Sbjct: 64 MVAIMCELL--DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL 121
Query: 62 QQ 63
++
Sbjct: 122 KK 123
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This
family appears to be have methyltransferase activity.
Length = 151
Score = 51.3 bits (123), Expect = 9e-10
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK 73
LK G KVLD+G G+GYLT A+ +G EV +++ E ++ N ++ N++
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLG---YENVE 57
Query: 74 FEPQTGEGDIQYL 86
F +GDI+ L
Sbjct: 58 FI----QGDIEEL 66
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 49.6 bits (119), Expect = 9e-09
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
AR ELL ++PG +VLD+G G G A VG G V ++ +L ++
Sbjct: 9 ARTFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA----KE 62
Query: 64 GNPELLPNIKFEPQTGEGDIQYL 86
L PN++F GD L
Sbjct: 63 RAAGLGPNVEFV----RGDADGL 81
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 49.6 bits (119), Expect = 1e-08
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
+ PG++VL+ G+GSG LTA A VG G VT E+ + + N+
Sbjct: 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL 139
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 48.3 bits (116), Expect = 3e-08
Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
M AR ELL LKPG +VL+IG+GSGY A A LV V +VE I
Sbjct: 66 MVARMTELL--ELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKT 111
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In
many organisms, this protein is fused to the CbiE
subunit. The fused protein, when found in organisms
catalyzing the oxidative version of the cobalamin
biosynthesis pathway, is called CobL [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 124
Score = 46.2 bits (110), Expect = 6e-08
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ- 63
RAL L K L+PG + DIG+G+G +T A LV NG V A+E PE L N+++
Sbjct: 8 RALTLSKLRLRPGDVLWDIGAGTGSVTIEAARLVP-NGRVYAIERNPEALDLIERNLRRF 66
Query: 64 ----------GNPELLPNIKFEP 76
PE ++ +P
Sbjct: 67 GVSNIVIVEGDAPEAPEDLLPDP 89
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 47.1 bits (112), Expect = 6e-08
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN---- 60
RAL L K L+ G +LDIG G+G +T + LVG G+V AV+ + + T N
Sbjct: 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF 88
Query: 61 --------IQQGNPELLPNI 72
I+ PE+L I
Sbjct: 89 GVLNNIVLIKGEAPEILFTI 108
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 47.4 bits (113), Expect = 7e-08
Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
++PG +VL+IGSG GY A A+LVG +GEVT V++ +V
Sbjct: 80 VEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDV 118
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 46.0 bits (109), Expect = 2e-07
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
M A EL++ +PG K+L++G+GSGY A A+ + G+V VE++ E+ + NI
Sbjct: 60 MVAMMCELIEP--RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI 117
Query: 62 QQ 63
++
Sbjct: 118 ER 119
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 43.5 bits (103), Expect = 5e-07
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFE 75
PGA+VLDIG G+G L A L VT V+L PE+L+ N + L P I F
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFP-GARVTGVDLSPEMLELARENAKLA---LGPRITFV 56
Query: 76 PQTGEGDIQYLLS 88
+GD L
Sbjct: 57 ----QGDAPDALD 65
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 43.0 bits (102), Expect = 2e-06
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
RAL L K +PG ++ DIG+G+G +T L G +G V A+E E L+ N
Sbjct: 23 RALTLSKLRPRPGDRLWDIGAGTGSIT-IEWALAGPSGRVIAIERDEEALELIERN 77
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This
family contains methyltransferase domains.
Length = 117
Score = 42.0 bits (99), Expect = 2e-06
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI 72
G +VLD G+GSG A G + V VEL PE + +
Sbjct: 1 GDRVLDPGAGSGAFLLAAARA-GPDARVVGVELDPEAAALARRRLALAGLAPRVRV 55
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 43.0 bits (102), Expect = 2e-06
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 8 ELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
LL +N K G +VL++G+GSG + A +V V++ P
Sbjct: 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINP 55
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 42.9 bits (101), Expect = 3e-06
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
L G +VL+IG G+GY A + +VG G V +VE ++ + N+++
Sbjct: 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR 127
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 42.2 bits (100), Expect = 5e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 13 NLKPGAKVLDIGSGSGYLTACF--ADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLP 70
LKPG VLD+GSG G+ CF A VG G+V V++ PE+L N ++
Sbjct: 74 ELKPGETVLDLGSGGGF--DCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT--- 128
Query: 71 NIKFEPQTGEGDIQYL 86
N++F G+I+ L
Sbjct: 129 NVEFR----LGEIEAL 140
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 42.0 bits (99), Expect = 6e-06
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 12 DNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTH--------YNIQ- 62
+K G K LD+ G+G T +D GS+G+V +++ +L+ YNI+
Sbjct: 43 MGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEF 102
Query: 63 -QGNPELLPNIK 73
QGN E LP
Sbjct: 103 LQGNAEELPFED 114
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 41.4 bits (98), Expect = 9e-06
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 10 LKDN-LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
L + +KPG+KVL +G+ SG + +D+VG G V AVE P V
Sbjct: 66 LDNIPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRV 110
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 41.2 bits (97), Expect = 1e-05
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
AR LE L +++ G +VL+IG+G+GY A +G + VT+VE+ P +
Sbjct: 97 ARMLEAL--DVEDGHRVLEIGTGTGYSAALLCHRLGDDN-VTSVEVDPGL 143
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 40.6 bits (95), Expect = 2e-05
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAV 47
LKPGA V+D+ G GY T F+ VG G+V A
Sbjct: 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY 79
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 40.6 bits (95), Expect = 2e-05
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
M + L+ L + G +VLD G G+G L+ A V AV++ +++Q
Sbjct: 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAK---RGAIVKAVDISEQMVQMA---- 93
Query: 62 QQGNPELLP--NIKFE 75
+ N++FE
Sbjct: 94 RNRAQGRDVAGNVEFE 109
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 39.0 bits (91), Expect = 2e-05
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKF 74
+VLD+G G+G L A G VT V++ P L+ + N++
Sbjct: 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLAD---NVEV 51
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 39.7 bits (93), Expect = 4e-05
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
+KPG+KVL +G+ SG + +DLVG G V AVE
Sbjct: 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEF 165
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 38.0 bits (89), Expect = 5e-05
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL----QFTHYNIQQGNPELLP 70
LD+G G+G L A G+ VT V+L PE+L + G+ E LP
Sbjct: 1 LDVGCGTGLLAEALARRGGAR--VTGVDLSPEMLALARKRAPRKFVVGDAEDLP 52
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 38.6 bits (91), Expect = 8e-05
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAV 47
++PG KVLD+ G+G L A VG GEV +
Sbjct: 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGL 82
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 38.9 bits (91), Expect = 9e-05
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 7 LELLKDNLKPGAK-VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
+E L K +LD+G+GSG + A G + EV AV++ P+ L N +
Sbjct: 100 VEAALALLLQLDKRILDLGTGSGAIAIALA-KEGPDAEVIAVDISPDALALARENAE 155
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 37.8 bits (89), Expect = 1e-04
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
ALE LK +VLD+G+GSG + A + VTAV++ PE L N +
Sbjct: 80 ALERLKKG---PLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLG 135
Query: 66 PELLPNIKF 74
L N++F
Sbjct: 136 ---LDNVEF 141
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 38.1 bits (89), Expect = 2e-04
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
L ++L+IG+ GY A + +G +T +E E + N+
Sbjct: 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA 105
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of
pimeloyl-CoA (although attribution of this annotation
is not traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 37.7 bits (88), Expect = 2e-04
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 2 MNARALELLKDNLKP-GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF--TH 58
M R L LLK+ A VLDIG G+GYLT E A ++ +L T
Sbjct: 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQAKTK 77
Query: 59 YNIQ----QGNPELLP 70
+ G+ E LP
Sbjct: 78 LSENVQFICGDAEKLP 93
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 37.6 bits (88), Expect = 2e-04
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAV 47
+KPG KVLD+ G+G + A VG GEV +
Sbjct: 48 GIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGL 81
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 37.2 bits (87), Expect = 3e-04
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFT 57
NL+ VL+IG G G LT A V A+E+ P + +
Sbjct: 26 NLQESDTVLEIGPGKGALTTELAKRAKQ---VVAIEIDPRLAKRL 67
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 36.3 bits (85), Expect = 6e-04
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
ALE L LK +VLD+G+GSG + A + EVTAV++ PE L N + G
Sbjct: 100 ALEAL--LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGL 156
Query: 66 PELLPNIKF 74
++F
Sbjct: 157 ---GARVEF 162
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 154
Score = 35.9 bits (83), Expect = 7e-04
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFAD 36
AR L L LKPG +VLDIG G+G L +
Sbjct: 10 ARLLARLLPRLKPGGRVLDIGCGTGILLRLLRE 42
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 35.2 bits (82), Expect = 0.001
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
NL+PG VL+IG G G LT +L+ VTA+E+
Sbjct: 10 NLRPGDTVLEIGPGKGALT---EELLERAKRVTAIEI 43
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase
C as well as other methyltransferases .
Length = 170
Score = 35.2 bits (82), Expect = 0.001
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 8 ELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
LL +L G KVLD+G G G L A A + EVT V++ L+ N+
Sbjct: 21 RLLLSHLPKPLGGKVLDLGCGYGVLGAALAKR-SPDLEVTMVDINARALESARANLAANG 79
Query: 66 PE 67
E
Sbjct: 80 LE 81
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the
UbiE enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a
wide distribution of bacteria and eukaryotes, but no
archaea. An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC
2.1.1.17) from Rhodobacter sphaeroides. Note that a
number of non-orthologous genes which are members of
pfam03737 have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 35.3 bits (82), Expect = 0.001
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKF 74
G KVLD+ G+G L A G+VT V+ E+L + + EL NI+F
Sbjct: 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-----EVAKKKSELPLNIEF 92
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the
immunosuppressant FK506 in Streptomyces strain MA6548.
Length = 144
Score = 34.6 bits (80), Expect = 0.001
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEP 76
V+D+G+ G + FA G+ G V A E +P+ + N+ + N LPN+
Sbjct: 2 VIDVGANIGDFSLYFA-RKGAEGRVIAFEPLPDAYEILEENV-KLNN--LPNVVLLN 54
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 35.1 bits (82), Expect = 0.002
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
LE L+ + PG VLD+G GSG L A A +G +V AV++ P+ ++ N +
Sbjct: 110 LEALEKLVLPGKTVLDVGCGSGIL-AIAAAKLG-AKKVLAVDIDPQAVEAARENAE---- 163
Query: 67 ELLPNIKFEPQTGEGDIQY 85
L ++ +GD++
Sbjct: 164 --LNGVELNVYLPQGDLKA 180
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 35.0 bits (81), Expect = 0.002
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
A AL + L PG +VLD+ +GSG L A A G+ G VTAV++ ++ N
Sbjct: 26 ADALA--AEGLGPGRRVLDLCTGSGAL-AVAAAAAGA-GSVTAVDISRRAVRSARLN 78
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 34.5 bits (80), Expect = 0.002
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
LE L+ +KPG VLD+G GSG L A A +G+ +V V++ P ++ N +
Sbjct: 151 LEALESLVKPGETVLDVGCGSGIL-AIAALKLGA-KKVVGVDIDPVAVRAAKENAEL 205
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 34.6 bits (80), Expect = 0.003
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYL 30
LE L+ LK G VLD+G GSG L
Sbjct: 153 LEALEKLLKKGKTVLDVGCGSGIL 176
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 34.0 bits (78), Expect = 0.004
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 11 KDNL-KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
K L KPG VLD+G+ G + + VG G V AV+L P
Sbjct: 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP 67
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 33.9 bits (78), Expect = 0.004
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 11 KDNL-KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
D L KPG V+D+G+ G + +G G V A +++P
Sbjct: 45 SDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 33.8 bits (78), Expect = 0.005
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
+ ALE L L G +VLD+ G G A V +V VE+ PE ++ N
Sbjct: 281 LYETALEWL--ELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENA 335
Query: 62 QQGNPELLPNIKFEPQTGE 80
+ N++F E
Sbjct: 336 AANG---IDNVEFIAGDAE 351
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 32.9 bits (75), Expect = 0.008
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFT 57
K G +VLD+ GSG L ++ VGS+G+V ++ E L
Sbjct: 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVA 114
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 33.0 bits (76), Expect = 0.009
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 4 ARALELL--KDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
L+L+ K LKPG +LDIG G G L A+ G V V L E
Sbjct: 58 RAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVT--VVGVTLSEE 106
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 32.9 bits (72), Expect = 0.010
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
+ + L L G VLDIG G+G L A L G V V+L PE+L
Sbjct: 35 DLLLVLRLLRLLPGGLGVLDIGCGTGRLAL-LARLGGRGAYVVGVDLSPEMLAL 87
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 224
Score = 32.7 bits (75), Expect = 0.012
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 2 MNARALELLKDNLKP------GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
MN L+ ++D ++ G +VLD+G G G L+ A L VT ++ E ++
Sbjct: 25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIE 81
Query: 56 FTHYNIQQGNPELLPNIKFEPQTGE 80
+ ++ L I++ + E
Sbjct: 82 VAKLHAKKDP---LLKIEYRCTSVE 103
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 32.3 bits (74), Expect = 0.016
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLT---AC-FADLVGSNGEVTAVELIPEVLQFTHYN 60
RAL L K L ++D+G+G+G ++ A F L +VTA+E P+ L+ N
Sbjct: 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSL-----QVTAIERNPDALRLIKEN 74
Query: 61 IQQGNPELLPNIK 73
Q+ NI
Sbjct: 75 RQRFG---CGNID 84
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 32.3 bits (74), Expect = 0.018
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+AL L N +PG+ VLD+ + G + A+L+ + G++TAV+ P+ L+
Sbjct: 238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLE 289
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 31.9 bits (73), Expect = 0.023
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 8 ELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
LL + L G KVLD+G G G L A ++T V++ ++ N+
Sbjct: 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANG 206
Query: 66 PE 67
E
Sbjct: 207 VE 208
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 205
Score = 31.4 bits (72), Expect = 0.026
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 4 ARA----LELL-KDNL-KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
+RA LEL K L KPG V+D+G+ G + A +G+ G++ AV+++P
Sbjct: 27 SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80
>gnl|CDD|214654 smart00415, HSF, heat shock factor.
Length = 105
Score = 31.1 bits (71), Expect = 0.027
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 52 EVLQFTHYNIQQGNPELLPNIKFE 75
+ +F + + +G PELL NIK +
Sbjct: 82 DQWEFANPDFVRGQPELLRNIKRK 105
>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This
family consist of Cyclopropane-fatty-acyl-phospholipid
synthase or CFA synthase EC:2.1.1.79 this enzyme
catalyze the reaction: S-adenosyl-L-methionine +
phospholipid olefinic fatty acid <=>
S-adenosyl-L-homocysteine + phospholipid cyclopropane
fatty acid.
Length = 273
Score = 31.1 bits (71), Expect = 0.035
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYL 30
L L K LKPG +LDIG G G L
Sbjct: 53 LILDKLGLKPGMTLLDIGCGWGGL 76
>gnl|CDD|224801 COG1889, NOP1, Fibrillarin-like rRNA methylase [Translation,
ribosomal structure and biogenesis].
Length = 231
Score = 30.8 bits (70), Expect = 0.046
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+K G+KVL +G+ SG + +D+VG G + AVE P ++
Sbjct: 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMR 114
>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding.
Length = 96
Score = 29.8 bits (68), Expect = 0.069
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 47 VELIPEVLQFTHYNIQQGNPELLPNIK 73
V+ +F H N ++G ELL IK
Sbjct: 65 VKDDRNGWEFAHPNFKRGQKELLSKIK 91
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 30.4 bits (69), Expect = 0.072
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 9/67 (13%)
Query: 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN-PE 67
L+ +L+ G VLD+G+G+G L A A L+G++ V AV++ PE L+ I + N E
Sbjct: 39 YLRGDLE-GKTVLDLGAGTGIL-AIGAALLGAS-RVLAVDIDPEALE-----IARANAEE 90
Query: 68 LLPNIKF 74
LL +++F
Sbjct: 91 LLGDVEF 97
>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized
[Amino acid biosynthesis, Aspartate family].
Length = 194
Score = 30.4 bits (69), Expect = 0.077
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFAD 36
LE + + + PG++VLD+G G G L A D
Sbjct: 4 LESILNLIPPGSRVLDLGCGDGELLALLRD 33
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 30.3 bits (69), Expect = 0.085
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
N+ PG VL+IG G G LT L+ VTA+E+
Sbjct: 27 NISPGDNVLEIGPGLGALT---EPLLERAARVTAIEI 60
>gnl|CDD|236170 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated.
Length = 791
Score = 30.3 bits (69), Expect = 0.085
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFA--DLVG--------SNGEVTAVELIPEVLQ 55
AL+ D L+ KV+ IGS L + FA +LVG + GE ++L +VL+
Sbjct: 298 ALQGAADILRQAKKVIGIGSPRASLESNFALRELVGAENFYTGIAAGEQERLQLALKVLR 357
>gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase;
Provisional.
Length = 383
Score = 30.2 bits (69), Expect = 0.090
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 14 LKPGAKVLDIGSGSGYLTACFA 35
LKPG +VLDIG G G L A +A
Sbjct: 165 LKPGMRVLDIGCGWGGL-ARYA 185
>gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase,
ribosomal protein L3-specific. Members of this protein
family methylate ribosomal protein L3 on a glutamine
side chain. This family is related to HemK, a
protein-glutamine methyltranferase for peptide chain
release factors [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 284
Score = 30.2 bits (69), Expect = 0.091
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 8 ELLKDNLKP------GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
EL++D P ++LD+ +GSG + A EV AV++ P+ L NI
Sbjct: 107 ELIEDGFAPWLEPEPVKRILDLCTGSGCI-AIACAYAFPEAEVDAVDISPDALAVAEINI 165
Query: 62 QQ 63
++
Sbjct: 166 ER 167
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 97
Score = 29.2 bits (66), Expect = 0.098
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67
+LD+G G+G + A S+ VT V++ E L+ ++ P+
Sbjct: 1 ILDLGCGTGRVLRALARAGPSS--VTGVDISKEALELAKERLRDKGPK 46
>gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 307
Score = 30.1 bits (69), Expect = 0.10
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 8 ELLKDNL------KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
EL++D P ++LD+ +GSG + A + EV AV++ P+ L NI
Sbjct: 119 ELIEDGFAPWLEDPPVTRILDLCTGSGCI-AIACAYAFPDAEVDAVDISPDALAVAEINI 177
Query: 62 QQ 63
++
Sbjct: 178 ER 179
>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit.
GCD14 is a subunit of the tRNA methyltransferase complex
and is required for 1-methyladenosine modification and
maturation of initiator methionyl-tRNA.
Length = 309
Score = 29.7 bits (67), Expect = 0.12
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVE 48
LKPG+ V + G+GSG L+ A V G + E
Sbjct: 100 LKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFE 134
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 29.8 bits (67), Expect = 0.12
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL----------QFTHYNIQ 62
N++ G LD+ G+ + A+ VG G V ++ +L + +
Sbjct: 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELV 101
Query: 63 QGNPELLP 70
GN LP
Sbjct: 102 HGNAMELP 109
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 29.7 bits (67), Expect = 0.12
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 11 KDNLKPGAKVLDIGSGSG 28
K +LKPG KVLD+G G G
Sbjct: 261 KLDLKPGQKVLDVGCGIG 278
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 29.4 bits (67), Expect = 0.18
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 8 ELLKDNLKP--GAKVLDIGSGSGY 29
+ + +L P G VLD+G G+GY
Sbjct: 112 DRVLPHLSPLKGRTVLDVGCGNGY 135
>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.
Length = 272
Score = 28.7 bits (65), Expect = 0.25
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 16/52 (30%)
Query: 1 MMNAR---------------ALELLKDNLKPGAK-VLDIGSGSGYLTACFAD 36
MM AR LL + L A +LDIG G GY T AD
Sbjct: 54 MMQARRAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALAD 105
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 28.8 bits (65), Expect = 0.26
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 14 LKPGAKVLDIGSGSGYLT-ACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI 72
+ ++LD+G+G+G L ++ VE+ E + N+ NP L I
Sbjct: 42 VPKKGRILDLGAGNGALGLLLAQRT--EKAKIVGVEIQEEAAEMAQRNVAL-NP-LEERI 97
Query: 73 KFEPQTGEGDIQ 84
+ E DI+
Sbjct: 98 QVI----EADIK 105
>gnl|CDD|225258 COG2384, COG2384, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 226
Score = 28.4 bits (64), Expect = 0.32
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
++ R L + + +K GA++ DIGS YL + A E++P L+
Sbjct: 2 QLSKR-LTTVANLVKQGARIADIGSDHAYL-PIYLVKNNPASTAVAGEVVPGPLE 54
>gnl|CDD|180466 PRK06202, PRK06202, hypothetical protein; Provisional.
Length = 232
Score = 28.4 bits (64), Expect = 0.32
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 20 VLDIGSGSGYLT---ACFADLVGSNGEVTAVELIPEVLQF 56
+LDIG G G L A +A G EVTA++ P + F
Sbjct: 64 LLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAF 103
>gnl|CDD|235267 PRK04266, PRK04266, fibrillarin; Provisional.
Length = 226
Score = 28.3 bits (64), Expect = 0.34
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 10 LKDN-LKPGAKVLDIGSGSGYLTACF-ADLVGSNGEVTAVELIPEVLQ 55
LK+ +K G+KVL +G+ SG T +D+V G V AVE P ++
Sbjct: 65 LKNFPIKKGSKVLYLGAASG-TTVSHVSDIVE-EGVVYAVEFAPRPMR 110
>gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase;
Provisional.
Length = 342
Score = 28.4 bits (64), Expect = 0.35
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFA 35
L L + K KVLD+G G+G L+A A
Sbjct: 189 LSTLTPHTK--GKVLDVGCGAGVLSAVLA 215
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
4-benzoquinol methylase [Coenzyme metabolism].
Length = 243
Score = 28.5 bits (64), Expect = 0.35
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
PG +VLD+G G G L+ A L VT ++ + ++
Sbjct: 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIE 95
>gnl|CDD|239636 cd03581, NTR_Sfrp3_like, NTR domain, Secreted frizzled-related
protein (Sfrp) 3-like subfamily; composed of proteins
similar to human Sfrp3 and Sfrp4. Sfrps are soluble
proteins containing an NTR domain C-terminal to a
cysteine-rich Frizzled domain. They show diverse
functions and are thought to work in Wnt signaling
indirectly, as modulators or antagonists by binding Wnt
ligands, and directly, via the Wnt receptor, Frizzled.
They participate in regulating the patterning along the
anteroposterior axis in vertebrates. Human Sfrp3 may
suppress the growth and invasiveness of
androgen-independent prostate cancer cells.
Length = 111
Score = 27.8 bits (62), Expect = 0.40
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 40 SNGEVTAVELIPEVLQFTHYNIQQGNPELLPN 71
EVTAV + E+L+ + NI + L N
Sbjct: 22 GCHEVTAVVEVKEILKSSLVNIPRDTVTLYTN 53
>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function
prediction only].
Length = 218
Score = 28.2 bits (63), Expect = 0.40
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
G +VLD+G+GSG L A A G+ EV A ++ P + Q N
Sbjct: 80 GKRVLDLGAGSG-LVAIAAARAGAA-EVVAADIDPWLEQAIRLNAAA 124
>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases. The gene
hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. Both
E. coli and H. influenzae have two members rather than
one. The members from the Mycoplasmas have an additional
C-terminal domain [Protein fate, Protein modification
and repair].
Length = 284
Score = 28.5 bits (64), Expect = 0.41
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 19 KVLDIGSGSG----YLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
+LD+G+GSG L F + EV AV++ P+ L N +
Sbjct: 117 HILDLGTGSGCIALALAYEFPNA-----EVIAVDISPDALAVAEENAE 159
>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW. This
family consists of several bacterial and one archaeal
methionine biosynthesis MetW proteins. Biosynthesis of
methionine from homoserine in Pseudomonas putida takes
place in three steps. The first step is the acylation
of homoserine to yield an acyl-L-homoserine. This
reaction is catalyzed by the products of the metXW
genes and is equivalent to the first step in
enterobacteria, gram-positive bacteria and fungi,
except that in these microorganisms the reaction is
catalyzed by a single polypeptide (the product of the
metA gene in Escherichia coli and the met5 gene product
in Neurospora crassa). In Pseudomonas putida, as in
gram-positive bacteria and certain fungi, the second
and third steps are a direct sulfhydrylation that
converts the O-acyl-L-homoserine into homocysteine and
further methylation to yield methionine. The latter
reaction can be mediated by either of the two
methionine synthetases present in the cells.
Length = 193
Score = 28.2 bits (63), Expect = 0.41
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYL 30
+ + PG++VLD+G G G L
Sbjct: 4 FRYIARLIPPGSRVLDLGCGDGSL 27
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 28.3 bits (64), Expect = 0.41
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
R +E G VL+IG G G LT A +V A+EL
Sbjct: 20 RIVEYA--EDTDGDPVLEIGPGKGALTDELAKRA---KKVYAIEL 59
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 28.3 bits (63), Expect = 0.46
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
LE L+D V+D+G GSG L+ L + +V +++ P ++ N +
Sbjct: 150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAEL 204
>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed.
Length = 272
Score = 27.8 bits (63), Expect = 0.60
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL 68
+PG VL+IG G G LT L+ +VTAVE+ ++ + N +
Sbjct: 39 GPQPGDNVLEIGPGLGALT---EPLLERAAKVTAVEIDRDLAPILAETFAEDNLTI 91
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 27.3 bits (61), Expect = 0.61
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
LDIG G+G L + E T V++ P L+
Sbjct: 1 LDIGCGTGTLLRALLEA-LPGLEYTGVDISPAALEA 35
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family
consists of FtsJ from various bacterial and archaeal
sources FtsJ is a methyltransferase, but actually has
no effect on cell division. FtsJ's substrate is the 23S
rRNA. The 1.5 A crystal structure of FtsJ in complex
with its cofactor S-adenosylmethionine revealed that
FtsJ has a methyltransferase fold. This family also
includes the N terminus of flaviviral NS5 protein. It
has been hypothesised that the N-terminal domain of NS5
is a methyltransferase involved in viral RNA capping.
Length = 177
Score = 27.2 bits (61), Expect = 0.90
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 4 ARA----LELL-KDNLKPGAK--VLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
+RA LE+ + LKPG VLD+G+ G + + G G+V AV+L P
Sbjct: 3 SRAAYKLLEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLERGG-AGKVVAVDLGP 56
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase.
[Protein synthesis, tRNA and rRNA base modification].
Length = 264
Score = 27.0 bits (60), Expect = 0.99
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+ +VLD+ + G T + L+ + G + A E+ + NI +
Sbjct: 68 EPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNINR 118
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA
in bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 27.2 bits (61), Expect = 1.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
N+ G VL+IG G G LT +VTA+E+
Sbjct: 26 NVLEGDVVLEIGPGLGALTEPLLKR---AKKVTAIEI 59
>gnl|CDD|236034 PRK07502, PRK07502, cyclohexadienyl dehydrogenase; Validated.
Length = 307
Score = 27.2 bits (61), Expect = 1.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 12 DNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
+LKPGA V D+GS + A A + V IP
Sbjct: 88 PHLKPGAIVTDVGSVKASVIAAMAPHLPEG-----VHFIP 122
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 27.1 bits (60), Expect = 1.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 48 ELIPEVLQFTHYNIQQGNPELLPNIK 73
ELIP + FT N GN + L +IK
Sbjct: 51 ELIPTTIDFTSNNFTIGNNKGLRSIK 76
>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional.
Length = 226
Score = 27.0 bits (60), Expect = 1.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL 54
LK +P KVLD+ +G G L+ F + V A++ +L
Sbjct: 46 LKYCGRPK-KVLDVAAGKGELSYHFKKVF--KYYVVALDYAENML 87
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 27.0 bits (60), Expect = 1.2
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL-LPN 71
K G KV IGSG L+ DL +VT E + E+ Y I PE LP
Sbjct: 429 KNGKKVAVIGSGPAGLS-FAGDLAKRGYDVTVFEALHEIGGVLKYGI----PEFRLPK 481
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 143
Score = 26.8 bits (60), Expect = 1.3
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 20 VLDIGSGSGYLTACFADLV---GSNGEVTAVELIPEV 53
V+D G+G GYL L+ V ++ E+
Sbjct: 29 VVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAEL 65
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 26.7 bits (60), Expect = 1.3
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
G +VLD+G G G L+ A L +VT ++ E ++
Sbjct: 49 GKRVLDVGCGGGILSESMARL---GADVTGIDASEENIE 84
>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase. Members of this
family are O-methyltransferases. The family includes
catechol o-methyltransferase, caffeoyl-CoA
O-methyltransferase and a family of bacterial
O-methyltransferases that may be involved in antibiotic
production.
Length = 204
Score = 26.9 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 17 GAK-VLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
GAK L+IG +GY A + +G++TA ++ PE
Sbjct: 44 GAKRTLEIGVFTGYSLLATALALPEDGKITACDIDPE 80
>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.
Length = 434
Score = 26.8 bits (60), Expect = 1.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAV 47
+PG +LD + G T A+L+G GE+ AV
Sbjct: 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAV 283
>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
Length = 431
Score = 26.8 bits (59), Expect = 1.5
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
L+PG +VLD + G T A+L+ G++ AV++ E +Q
Sbjct: 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQ 276
>gnl|CDD|149788 pfam08841, DDR, Diol dehydratase reactivase ATPase-like domain.
Diol dehydratase (DDH, EC:4.2.1.28) and its
isofunctional homologue glycerol dehydratase (GDH,
EC.4.2.1.30) are enzymes which catalyze the conversion
of glycerol 1,2-propanediol, and 1,2-ethanediol to
aldehydes. These reactions require coenzyme B12.
Cleavage of the Co-C bond of coenzyme B12 by substrates
or coenzyme analogues results in inactivation during
which coenzyme B12 remains tightly bound to the
apoenzyme. This family comprises of the large subunit of
the diol dehydratase and glycerol dehydratase
reactivating factors whose function is to reactivate the
holoenzyme by exchange of a damaged cofactor for intact
coenzyme.
Length = 332
Score = 26.2 bits (58), Expect = 2.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
+LD+G+GS A ++ + G VTA L
Sbjct: 132 TPKPLAILDLGAGS-----TDASIINAEGTVTATHL 162
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 26.3 bits (58), Expect = 2.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 23 IGSGSGYLTACFADLVGSNGEVTAVE---LIPEVLQFTHYNIQQGNP 66
IG+G F D+ SN EV V ++P++ + T+ I +GNP
Sbjct: 617 IGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNP 663
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 105
Score = 25.7 bits (57), Expect = 2.1
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 21 LDIGSGSGYLTACFADLVGSNG--EVTAVELIP 51
++IG SG T A + NG + +++ P
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWP 33
>gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed.
Length = 187
Score = 26.2 bits (59), Expect = 2.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 9/39 (23%)
Query: 14 LKPGAKVLDIGSGSGY----LTACFADLVGSNGEVTAVE 48
L G +VLD+GSG+G+ L +L +VT V+
Sbjct: 43 LPGGERVLDVGSGAGFPGIPLAIARPEL-----KVTLVD 76
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 26.1 bits (58), Expect = 2.2
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVE 48
++L + K G KV IGSG LT C DL +VT E
Sbjct: 130 IDLSETEEKKGKKVAVIGSGPAGLT-CAGDLAKMGYDVTIFE 170
>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase;
Provisional.
Length = 263
Score = 26.1 bits (57), Expect = 2.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 14 LKPGAKVLDIGSGSG 28
L +KVLDIGSG G
Sbjct: 50 LNENSKVLDIGSGLG 64
>gnl|CDD|115715 pfam07079, DUF1347, Protein of unknown function (DUF1347). This
family consists of several hypothetical bacterial
proteins of around 610 residues in length. Members of
this family are highly conserved and seem to be specific
to Chlamydia species. The function of this family is
unknown.
Length = 550
Score = 26.3 bits (58), Expect = 2.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 39 GSNGEVTAVELIPEVLQFTHYNIQQGNPELL 69
GS E A+ L+ +LQFT Y+I+ N L
Sbjct: 393 GSCDE-KALNLLKLILQFTDYDIECENIVFL 422
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NADP binding domain of the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs also
have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a multifunctional
protein in eukaryotes. NADP-dependent m-THF DH in
mammals, birds and yeast are components of a
trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, monofucntional DH, as well as bifunctional
m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains the bifunctional
DH/cyclohydrolase. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains.
Length = 168
Score = 25.6 bits (57), Expect = 3.6
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 8 ELLK-DNLKPGAKVLDIG 24
L+K D +KPGA V+D+G
Sbjct: 99 GLVKGDMVKPGAVVIDVG 116
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 25.6 bits (57), Expect = 3.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 4 ARALELLKDNLKPGAKVLDI 23
A+AL+ + +KPG L++
Sbjct: 22 AKALKEVASLVKPGVTTLEL 41
>gnl|CDD|219740 pfam08192, Peptidase_S64, Peptidase family S64. This family of
fungal proteins is involved in the processing of
membrane bound transcription factor Stp1. The processing
causes the signalling domain of Stp1 to be passed to the
nucleus where several permease genes are induced. The
permeases are important for uptake of amino acids, and
processing of tp1 only occurs in an amino acid-rich
environment. This family is predicted to be distantly
related to the trypsin family (MEROPS:S1) and to have a
typical trypsin-like catalytic triad.
Length = 644
Score = 25.5 bits (56), Expect = 3.9
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 13 NLKPGAKVLDIGSGSGYLT 31
PG V GS + Y
Sbjct: 535 RYVPGLNVFKYGSTTKYTR 553
>gnl|CDD|183450 PRK12335, PRK12335, tellurite resistance protein TehB; Provisional.
Length = 287
Score = 25.3 bits (56), Expect = 4.3
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 12/47 (25%)
Query: 14 LKPGAKVLDIGSGSG----YLTACFADLVGSNGEVTAVELIPEVLQF 56
+KPG K LD+G G G YL L+G +VTAV++ + L+
Sbjct: 119 VKPG-KALDLGCGQGRNSLYLA-----LLGF--DVTAVDINQQSLEN 157
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 25.2 bits (56), Expect = 4.4
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 2 MNARALELLK-DNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
M L L D G ++LD G G G L+ L +V A ++ P++++
Sbjct: 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLS---IPLARRGAKVVASDISPQMVEEAR-- 102
Query: 61 IQQGNPELLP-NIKFEPQT 78
++ L NI FE
Sbjct: 103 -ERAPEAGLAGNITFEVGD 120
>gnl|CDD|178613 PLN03055, PLN03055, AMP deaminase; Provisional.
Length = 602
Score = 25.6 bits (56), Expect = 4.5
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 69 LPNIKFEPQTGE-GDIQYLLS 88
L IKF P GE GDI +L +
Sbjct: 414 LNTIKFRPHAGEAGDIDHLAA 434
>gnl|CDD|238242 cd00423, Pterin_binding, Pterin binding enzymes. This family
includes dihydropteroate synthase (DHPS) and
cobalamin-dependent methyltransferases such as
methyltetrahydrofolate, corrinoid iron-sulfur protein
methyltransferase (MeTr) and methionine synthase
(MetH). DHPS, a functional homodimer, catalyzes the
condensation of p-aminobenzoic acid (pABA) in the de
novo biosynthesis of folate, which is an essential
cofactor in both nucleic acid and protein biosynthesis.
Prokaryotes (and some lower eukaryotes) must synthesize
folate de novo, while higher eukaryotes are able to
utilize dietary folate and therefore lack DHPS.
Sulfonamide drugs, which are substrate analogs of pABA,
target DHPS. Cobalamin-dependent methyltransferases
catalyze the transfer of a methyl group via a methyl-
cob(III)amide intermediate. These include MeTr, a
functional heterodimer, and the folate binding domain
of MetH.
Length = 258
Score = 25.3 bits (56), Expect = 4.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
+ALE + ++ GA ++DIG S T A+ V E+ V IP +
Sbjct: 24 DKALEHARRMVEEGADIIDIGGES---TRPGAEPVSVEEELERV--IPVL 68
>gnl|CDD|215411 PLN02768, PLN02768, AMP deaminase.
Length = 835
Score = 25.2 bits (55), Expect = 5.1
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 69 LPNIKFEPQTGE-GDIQYL 86
+ IKF P +GE GDI +L
Sbjct: 647 MTTIKFRPHSGEAGDIDHL 665
>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 25.0 bits (55), Expect = 5.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 9 LLKDNLKPGAKVLDIG 24
+ D +KPGA VLD+G
Sbjct: 217 VTADMVKPGAAVLDVG 232
>gnl|CDD|223364 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and
metabolism].
Length = 279
Score = 25.0 bits (55), Expect = 5.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 5 RALELLKDNLKPGAKVLDIGS 25
L+ L +LK GA V D+GS
Sbjct: 79 EVLKELAPHLKKGAIVTDVGS 99
>gnl|CDD|234323 TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha
subunit. This family of proteins contains a C-terminal
thiamine diphosphate (TPP) binding domain typical of
flavodoxin/ferredoxin oxidoreductases (pfam01855) as
well as an N-terminal domain similar to the gamma
subunit of the same group of oxidoreductases
(pfam01558). The genes represented by this model are
always found in association with a neighboring gene for
a beta subunit (TIGR02177) which also occurs in a
4-subunit (alpha/beta/gamma/ferredoxin) version of the
system. This alpha/gamma plus beta structure was used
to define the set of sequences to include in this
model. This pair of genes is not consistantly observed
in proximity to any electron acceptor genes, but is
found next to putative ferredoxins or ferredoxin-domain
proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum
USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens
DSM 15236, Rhodopseudomonas palustris BisB5, Os,
Sphingomonas wittichii RW1 and Streptomyces
clavuligerus. Other potential acceptors are also
sporadically observed in close proximity including
ferritin-like proteins, reberythrin, peroxiredoxin and
a variety of other flavin and iron-sulfur
cluster-containing proteins. The phylogenetic
distribution of this family encompasses archaea, a
number of deeply-branching bacterial clades and only a
small number of firmicutes and proteobacteria. The
enzyme from Sulfolobus has been characterized with
respect to its substrate specificity which is described
as wide, encompassing various 2-oxoacids such as
2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme
from Hydrogenobacter thermophilus has been shown to
have a high specificity towards 2-oxoglutarate and is
one of the key enzymes in the reverse TCA cycle in this
organism. Furthermore, considering its binding of
coenzyme A, it can be reasonably inferred that the
product of the reaction is succinyl-CoA. The genes for
this enzyme in Prevotella intermedia 17, Persephonella
marina EX-H1 and Picrophilus torridus DSM 9790 are in
close proximity to a variety of TCA cycle genes.
Persephonella marina and P. torridus are believed to
encode complete TCA cycles, and none of these contains
the lipoate-based 2-oxoglutarate dehydrogenase
(E1/E2/E3) system. That system is presumed to be
replaced by this one. In fact, the lipoate system is
absent in most organisms possessing a member of this
family, providing additional circumstantial evidence
that many of these enzymes are capable of acting as
2-oxoglutarate dehydrogenases and.
Length = 562
Score = 25.2 bits (56), Expect = 6.1
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 2 MNARALELLKDNLKPGAKVL 21
+N L+ D L+PG ++
Sbjct: 71 LNPETLKEHLDELRPGGIII 90
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 24.8 bits (55), Expect = 6.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 4 ARALELLKDNLKPGAKVLDI 23
++ E +KPGAK+LD+
Sbjct: 13 SKVREEAAKLIKPGAKLLDV 32
>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Length = 160
Score = 24.3 bits (54), Expect = 7.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 11 KDNLKPGAKVLDIG 24
D +KPGA V+D+G
Sbjct: 95 ADWVKPGAVVIDVG 108
>gnl|CDD|234582 PRK00028, infC, translation initiation factor IF-3; Reviewed.
Length = 177
Score = 24.4 bits (54), Expect = 9.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 72 IKFEPQTGEGDIQY 85
IKF P+ E D +
Sbjct: 94 IKFRPKIDEHDYET 107
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an
antigen that is associated with the membrane of the
infected erythrocyte throughout the entire
intraerythrocytic cycle. The exact function of this
family is unclear.
Length = 286
Score = 24.5 bits (53), Expect = 9.7
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 24 GSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKF----EPQTG 79
SGSG T CF ++ P V + +P+ LPN+KF P T
Sbjct: 22 SSGSGSTTGCFPFCRKKTKKIHKTAEEPPV---KGKDGIDYDPD-LPNLKFIDEFTPITL 77
Query: 80 EG 81
E
Sbjct: 78 EV 79
>gnl|CDD|114305 pfam05575, V_cholerae_RfbT, Vibrio cholerae RfbT protein. This
family consists of several RfbT proteins from Vibrio
cholerae. It has been found that genetic alteration of
the rfbT gene is responsible for serotype conversion of
Vibrio cholerae O1 and determines the difference between
the Ogawa and Inaba serotypes, in that the presence of
rfbT is sufficient for Inaba-to-Ogawa serotype
conversion.
Length = 286
Score = 24.6 bits (53), Expect = 9.7
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
+DIG+ G A + + G++ A+E + E+ N+Q NP
Sbjct: 84 IDIGANVGTFCGIAARHI-TQGKIIAIEPLTEMENSIRMNVQLNNP 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.137 0.392
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,524,000
Number of extensions: 369987
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 131
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.0 bits)