RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8023
(88 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 94.2 bits (235), Expect = 7e-26
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
M+A ALELL D L GAK LD+GSGSG LTACFA +VG G+V ++ I E++ + N+
Sbjct: 63 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV 122
Query: 62 QQGNPELL--PNIKF 74
++ +P LL ++
Sbjct: 123 RKDDPTLLSSGRVQL 137
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 87.7 bits (218), Expect = 2e-23
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-----EVTAVELIPEVLQF 56
M+A ALE L+D+LKPGA++LD+GSGSGYLTACF + + G + +E E+++
Sbjct: 70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRR 129
Query: 57 THYNIQQGNPELL--PNIKF 74
+ N+ + +L +
Sbjct: 130 SKANLNTDDRSMLDSGQLLI 149
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 86.1 bits (214), Expect = 9e-23
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFA----DLVGSNGEVTAVELIPEVLQFT 57
M+A +L+ L + LKPG++ +D+GSGSGYLT C A L N V +E + +++ F+
Sbjct: 66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFS 125
Query: 58 HYNIQQGNPELL--PNIKF 74
NI++ PELL N K
Sbjct: 126 LENIKRDKPELLKIDNFKI 144
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 78.0 bits (193), Expect = 1e-19
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
M ELL LKPG KVL+IG+G GY A A++VG +G V ++E IPE+ + +
Sbjct: 65 MVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTL 122
Query: 62 QQGNPELLPNIKF 74
++ N+
Sbjct: 123 RKLG---YDNVIV 132
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 76.7 bits (189), Expect = 1e-18
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
A +E + L G +VL+IG G+GY A + +VG G V +VE ++ + N+++
Sbjct: 65 ALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER 122
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 73.4 bits (181), Expect = 9e-18
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
M A LE+ NLKPG +L++G+GSG+ A +++V +V +E IPE+++F N+
Sbjct: 79 MVAIMLEIA--NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNL 134
Query: 62 QQGNPELLPNIKF 74
++ + N+
Sbjct: 135 ERAG---VKNVHV 144
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 72.3 bits (178), Expect = 2e-17
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
L+ L L G KVL+IG+G GY TA A++V +V +VE+ ++ + +
Sbjct: 60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY 114
Query: 64 GNPELLPNIKF 74
NIK
Sbjct: 115 -----YNNIKL 120
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 64.9 bits (159), Expect = 9e-15
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
M AR ELL+ L P ++VL+IG+GSGY TA A LV V +VE I +
Sbjct: 64 YMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRR 118
Query: 61 IQQGNPELLPNIKF 74
++ + L N+
Sbjct: 119 LKNLD---LHNVST 129
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 63.6 bits (155), Expect = 3e-14
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 8 ELLKD-NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
++LK+ LK G VLD+G+G+G+ + +VG G+V A+++ E++ + + +
Sbjct: 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG- 86
Query: 67 ELLPNIKFEPQTGEGDIQYL 86
L N++ + + +
Sbjct: 87 --LKNVEVL----KSEENKI 100
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET:
SAM; 2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 62.2 bits (151), Expect = 8e-14
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67
+ +K +K G V+D G+G TA A LVG NG V ++ + + T + N
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-- 71
Query: 68 LLPNIKFEPQTGEGDIQYL 86
L+ + + +Y+
Sbjct: 72 LIDRVTLIKDGHQNMDKYI 90
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 58.9 bits (142), Expect = 5e-12
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL---- 68
GA VLD+G G+G + LVG +G+V V+++ L+ ++ +
Sbjct: 80 GSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSP 139
Query: 69 -LPNIKFEPQTGEGDIQYL 86
N++F +G I+ L
Sbjct: 140 SRSNVRFL----KGFIENL 154
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; HET: SAH; 2.30A {Bacillus
cereus} PDB: 2gh1_A
Length = 284
Score = 56.9 bits (137), Expect = 2e-11
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK 73
+ ++D G G GYL L+ + T ++ +L ++ L + +
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA----RELFRLLPYDSE 75
Query: 74 FEPQTGEGDIQYL 86
F EGD +
Sbjct: 76 FL----EGDATEI 84
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 56.6 bits (136), Expect = 2e-11
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+K G ++L +G SG + +D++G G + VE P V++
Sbjct: 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMR 116
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 56.1 bits (135), Expect = 4e-11
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
+ PGAKVL+ G G G T A + E+T++++ PE L+ N
Sbjct: 24 TLEKLLHHDT--VYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKAREN 80
Query: 61 IQQGNPELLPNIKFEPQTGEGDIQYL 86
++ + N+KF + +I L
Sbjct: 81 TEKNG---IKNVKFL----QANIFSL 99
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L
protein, methyltransferase domain; 1.85A {Lactobacillus
casei}
Length = 275
Score = 54.3 bits (130), Expect = 2e-10
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL 54
+KPG K+L+IG G G L+A AD VGS+G VT +++
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDY 81
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 53.9 bits (129), Expect = 2e-10
Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL 68
+ + + ++D+G G G T A + ++ +L +++ I++G+P+
Sbjct: 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE-VIKEGSPDT 87
Query: 69 LPNIKFEPQTGE 80
N+ F+ + +
Sbjct: 88 YKNVSFKISSSD 99
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 53.1 bits (127), Expect = 4e-10
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
++K G +++D G GSG + A A VGS+G+V A E E + N+ +
Sbjct: 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 159
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 51.8 bits (124), Expect = 1e-09
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF-THYNIQQ 63
+A+ + + L AK+ DIG G+G T AD V G++T ++L P+ ++ ++
Sbjct: 36 KAVSFINE-LTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKA 92
Query: 64 GNPELLPNIKFEPQTGEGDIQYL 86
+K G + L
Sbjct: 93 N---CADRVKGI----TGSMDNL 108
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 51.7 bits (124), Expect = 1e-09
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
++ + +VLDIG+G+G+ F+ V E V+ E+++ Q+
Sbjct: 11 GLMIKTA--ECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQE 65
Query: 64 GNPELLPNIKFEPQTGEGDIQYL 86
+ N++F+ +G + L
Sbjct: 66 KG---VENVRFQ----QGTAESL 81
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 51.3 bits (123), Expect = 2e-09
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ-------- 55
A+ +++ LK +VLD+ +G G++ FA V +V A +L ++L+
Sbjct: 27 AKLMQIA--ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEG 81
Query: 56 --FTHYNIQQGNPELLP 70
QG+ E +P
Sbjct: 82 NGHQQVEYVQGDAEQMP 98
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus
pneumoniae} PDB: 3ku1_A*
Length = 225
Score = 50.6 bits (121), Expect = 3e-09
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
M++ R LEL+ + GA +LD+GS YL G A E++ Q N
Sbjct: 1 MISKR-LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKN 58
Query: 61 IQQ 63
++
Sbjct: 59 VEA 61
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 49.3 bits (118), Expect = 5e-09
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 8 ELLKD-NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
E L + ++D G G+G+ + ++ +++ L+
Sbjct: 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALK 53
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 50.0 bits (118), Expect = 6e-09
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
L +LK G VLD+G G+LT A G + +++ ++ NI+
Sbjct: 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRH--- 92
Query: 67 ELLPNIKFEPQTGEGDIQ 84
L ++ PQT EGD
Sbjct: 93 YLSEELRLPPQTLEGDPG 110
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
3t7s_A* 3t7r_A* 3t7t_A*
Length = 267
Score = 49.9 bits (119), Expect = 6e-09
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+AL + DNL + + DIG G+G T A V G+VT ++ + +
Sbjct: 36 KALSFI-DNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFID 83
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 49.8 bits (118), Expect = 7e-09
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
++ PG VL+ GSGSG ++ + VGS G V + E+ + N +
Sbjct: 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 152
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 49.5 bits (118), Expect = 7e-09
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ-----F 56
+ + + +K A+VLD+G G GY T + + V++ ++Q
Sbjct: 39 SRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERG 95
Query: 57 THYNI--QQGNPELLP 70
++ +G+ LP
Sbjct: 96 EGPDLSFIKGDLSSLP 111
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 49.6 bits (118), Expect = 7e-09
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
L L P +VL+ G G G A F A + PE+L+
Sbjct: 36 LTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLK 84
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 49.6 bits (118), Expect = 8e-09
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67
+ PG +++ G GSG LT A++VG G V + E+ + + NI+ +
Sbjct: 90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD 144
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 49.7 bits (118), Expect = 8e-09
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 6/80 (7%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
L+ +L+PG V + G ++ ++ PE L
Sbjct: 109 RRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA- 167
Query: 67 ELLPNIKFEPQTGEGDIQYL 86
L I D L
Sbjct: 168 -LAGQITLH----RQDAWKL 182
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 49.1 bits (117), Expect = 1e-08
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF----THYNIQQ 63
L++ LK +VLD+G G+G + + EV V+ E+L+ N+ +
Sbjct: 46 SFLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVKNVVE 102
Query: 64 GNPELLPNIKFEPQT 78
E LP F
Sbjct: 103 AKAEDLP---FPSGA 114
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 48.9 bits (116), Expect = 1e-08
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+++ L+PG +L++G GSG +++ + G +T VE + L+ N+ +
Sbjct: 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE 157
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 48.9 bits (116), Expect = 1e-08
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
++ G KVL +G+ SG + +D++ NG+ VE P V++
Sbjct: 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVR 115
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAM; 1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 47.9 bits (114), Expect = 2e-08
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPE 52
+ L L GAK+L++G G+GY G +V A + PE
Sbjct: 31 SATLTKFLGELPAGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPE 76
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 48.4 bits (115), Expect = 2e-08
Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 11/83 (13%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
A A+ L++G G+G + A++ +L+ +Q
Sbjct: 27 ATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVF----RQ 79
Query: 64 GNPELLPNIKFEPQTGEGDIQYL 86
+ ++ + D + +
Sbjct: 80 KIAGVDRKVQVV----QADARAI 98
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 47.8 bits (114), Expect = 3e-08
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 17/83 (20%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
L+LL N +PG +LD+G G+G LT A EV + +++
Sbjct: 47 EDLLQLL--NPQPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKAR----- 96
Query: 64 GNPELLPNIKFEPQTGEGDIQYL 86
+ P++ F+ D +
Sbjct: 97 ---QNYPHLHFD----VADARNF 112
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural
genomics, midwest CENT structural genomics, protein
structure initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 47.6 bits (113), Expect = 4e-08
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
L+ + + + GA++LD+GS YL F +G A E++ Q N+ +
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE 67
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 47.2 bits (112), Expect = 4e-08
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
++ R LE + + ++ DIGS YL CFA + A E++ Q +
Sbjct: 8 LSKR-LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQV 65
Query: 62 QQ 63
+
Sbjct: 66 RS 67
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 47.5 bits (112), Expect = 5e-08
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTA-CFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
E + G + + IG G LT + + G V VE+ P++ + + I+
Sbjct: 112 KNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGL 169
Query: 65 NPELLPNIKFEPQTGE 80
+ +
Sbjct: 170 G---VDGVNVITGDET 182
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 46.6 bits (110), Expect = 7e-08
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+KPG VL +G SG + +D+VG G++ +E P VL+
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLR 112
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus}
SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 46.2 bits (110), Expect = 7e-08
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
R L + +D+G G+G +T A V A++ PE + T N+Q+
Sbjct: 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQR 77
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 46.6 bits (110), Expect = 8e-08
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+L PG +VL+ G+GSG LT A VG G V + E P L N++
Sbjct: 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA 143
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 46.6 bits (110), Expect = 9e-08
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+KPGAKVL +G+ SG + +D+VG +G V AVE +
Sbjct: 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR 116
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 46.4 bits (110), Expect = 9e-08
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67
LL +K KVLD+ G G + D EV V++ ++++ +
Sbjct: 30 PLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-- 84
Query: 68 LLPNIKFEPQTGEGDIQYL 86
N++F GD + L
Sbjct: 85 --SNVEFI----VGDARKL 97
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 46.4 bits (110), Expect = 1e-07
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 6 ALELLKD-NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
A +LL L+ D+G G G T D G +T ++ ++L+
Sbjct: 22 ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAA------ 74
Query: 65 NPELLPNIKFEPQTGEGDIQYL 86
+ LPN F + D+
Sbjct: 75 --DRLPNTNFG----KADLATW 90
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 45.6 bits (108), Expect = 2e-07
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI 72
+ G +DIGSG G L+ A + A++ + + NI N L I
Sbjct: 41 GITAG-TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADAN--LNDRI 95
Query: 73 KFEPQTGEGDIQYL 86
+ +GD+ +
Sbjct: 96 QIV----QGDVHNI 105
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 44.8 bits (106), Expect = 2e-07
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
RAL + KP + DIG GSG + E+ E + N
Sbjct: 14 RALAISALAPKPHETLWDIGGGSGSIA-IEWLRSTPQTTAVCFEISEERRERILSNAIN 71
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 45.0 bits (106), Expect = 3e-07
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67
LL+ L+P ++L +G G+ L+ N VT+V+ V+
Sbjct: 34 ALLEPELRPEDRILVLGCGNSALSYELFLGGFPN--VTSVDYSSVVVAAMQACYAH---- 87
Query: 68 LLPNIKFEPQTGEGDIQYL 86
+P +++E D++ L
Sbjct: 88 -VPQLRWE----TMDVRKL 101
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 44.9 bits (106), Expect = 3e-07
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL----QFTHY 59
+ LL NL G+ + DIG+G+G + A+ V AVE +
Sbjct: 24 NAIINLL--NLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHPQV 78
Query: 60 NIQQGNPELLP 70
G E L
Sbjct: 79 EWFTGYAENLA 89
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 44.7 bits (105), Expect = 4e-07
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL 54
L + P ++D G+G T + V +++ L
Sbjct: 44 VVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSAL 91
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 44.1 bits (104), Expect = 5e-07
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 1 MMNARALE----LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
M+ R + L + L + V+D G+G TA A G + +V A ++ + L
Sbjct: 4 MIK-RPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGK 59
Query: 57 THYNIQQGNPELLPNIKFEPQTGEGDIQYL 86
T + + N + E Y+
Sbjct: 60 TSQRLSDLG---IENTELILDGHENLDHYV 86
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 44.1 bits (104), Expect = 5e-07
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL 54
ALE L VL++ SG+GY T + L VTA++ E++
Sbjct: 35 PAALERL-RAGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMI 81
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 44.4 bits (104), Expect = 6e-07
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL 68
+ + ++ PGA+VL+ G+GSG LT VG G+V + E + + N+ +
Sbjct: 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 151
Query: 69 LPNIKF 74
N +
Sbjct: 152 PDNWRL 157
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 43.8 bits (103), Expect = 7e-07
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
NL +VL+ G+GSG L A +++ G AVE +
Sbjct: 88 NLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKT 128
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 43.6 bits (103), Expect = 8e-07
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
A LK L PG +L++G+G+GY + VE +L
Sbjct: 24 AEEERALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLA 70
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 43.4 bits (102), Expect = 1e-06
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQF--T 57
++ AR L K +VLDIG G G F +L G E V++ ++++F
Sbjct: 27 LVKAR-LRRYIPYFKGCRRVLDIGCGRGE----FLELCKEEGIESIGVDINEDMIKFCEG 81
Query: 58 HYNIQQGNPEL----LPNIKF 74
+N+ + + LP+
Sbjct: 82 KFNVVKSDAIEYLKSLPDKYL 102
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure
initiative, PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 43.2 bits (102), Expect = 1e-06
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ----- 55
NA LLK K +VLDIG SG L A + V+ +E PE +
Sbjct: 17 YYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEK 73
Query: 56 FTHYNIQQGNPELLP 70
H + +P
Sbjct: 74 LDHVVLGDIETMDMP 88
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 43.2 bits (102), Expect = 1e-06
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
+ +LD+G+G+G L+A + T V++ ++L+ +
Sbjct: 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGN 91
Query: 65 NPELLPNIKFEPQTGEGDIQYL 86
+K+ E D
Sbjct: 92 -----LKVKYI----EADYSKY 104
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 41.8 bits (98), Expect = 3e-06
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
RA+ L K L+ + DIG+GS ++ A + NG + A+E P+ L F N+++
Sbjct: 29 RAVTLSKLRLQDDLVMWDIGAGSASVS-IEASNLMPNGRIFALERNPQYLGFIRDNLKK 86
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics,
PSI-2, protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 41.8 bits (98), Expect = 4e-06
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 4 ARALELLKD-NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
A ++L+D K VL+ G G+G LT V +E E
Sbjct: 32 AHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSRE 78
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 41.4 bits (98), Expect = 4e-06
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ-- 62
RA+ + K NL V+D+G GSG +T A V A++ + ++ T N+
Sbjct: 24 RAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKF---VYAIDYLDGAIEVTKQNLAKF 80
Query: 63 --------QGN-PELLPNIKF 74
+G ++L ++F
Sbjct: 81 NIKNCQIIKGRAEDVLDKLEF 101
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 41.4 bits (97), Expect = 6e-06
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF-THYNIQQGNPEL 68
+ L+ AK LD+G+G G G + + + P + YN Q G L
Sbjct: 76 MTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAG---L 130
Query: 69 LPNIKFE 75
NI +
Sbjct: 131 ADNITVK 137
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 41.3 bits (97), Expect = 6e-06
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 4 ARALELL--KDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF-THYN 60
R + + +++ G +VLD+G G G A VT + + +
Sbjct: 47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARA 104
Query: 61 IQQG 64
G
Sbjct: 105 TAAG 108
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 41.3 bits (97), Expect = 7e-06
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF--THYNIQQGN 65
++ + L+ ++LDIG GSG ++ A VT +++ E ++ T N
Sbjct: 22 PIIHNYLQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLN 78
Query: 66 PELLPNIKFEPQTGEGDIQYL 86
+ +F+ + L
Sbjct: 79 QKTGGKAEFK----VENASSL 95
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 41.4 bits (97), Expect = 7e-06
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYNIQ 62
+ A E VL++ +G G LT F DL G EVTA+EL VL +
Sbjct: 70 SEAREFATRTGPVSGPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRKRLA 125
Query: 63 QGNPELLPNIKFEPQTGEGDIQYL 86
+ ++ +GD+
Sbjct: 126 EAPADVRDRCTLV----QGDMSAF 145
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens
str}
Length = 260
Score = 41.4 bits (97), Expect = 7e-06
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPN 71
++ D+G+G+G A + EVT E E+ +F +++ +
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSA 90
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 41.0 bits (96), Expect = 9e-06
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
M+ + +PG +L++GS G T+ + ++T VE E +
Sbjct: 29 MHPFMVRAFTPFFRPG-NLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISH 79
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 40.6 bits (95), Expect = 1e-05
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
RAL L + G + DIG GSG ++ + + G +E + ++ NI
Sbjct: 44 RALTLAALAPRRGELLWDIGGGSGSVS---VEWCLAGGRAITIEPRADRIENIQKNIDT 99
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 40.5 bits (95), Expect = 1e-05
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
++ L+ VLD+G+ +G +T V + +L L+
Sbjct: 14 MDALEREGLEMKIVLDLGTSTGVITEQLR----KRNTVVSTDLNIRALESHRGGNL 65
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 40.2 bits (94), Expect = 1e-05
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQ 55
L+ GAK+LD G G G + + G +V +L P ++
Sbjct: 34 YGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDPILID 82
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 40.3 bits (95), Expect = 1e-05
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+ ++ + V D+G+GSG L A A +G+ V A ++ E + N
Sbjct: 51 MLGIERAMVKPLTVADVGTGSGIL-AIAAHKLGA-KSVLATDISDESMTAAEENAAL 105
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis}
PDB: 3jwj_A
Length = 217
Score = 40.3 bits (94), Expect = 1e-05
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 2 MNARALELLKDNLK--PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
+N + + + LK +V+D+G G G L ++T V++ L+
Sbjct: 13 LNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEI 68
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 40.5 bits (94), Expect = 1e-05
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+K +K+L +G+ +G + AD + G V A+E P +++
Sbjct: 72 IKRDSKILYLGASAGTTPSHVAD-IADKGIVYAIEYAPRIMR 112
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 40.2 bits (94), Expect = 2e-05
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
A +L +KPG ++LD+GSGSG + +A G T +++
Sbjct: 26 ATLGRVL--RMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSL 70
>3lpm_A Putative methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium, nysgxrc; 2.40A {Listeria
monocytogenes}
Length = 259
Score = 40.2 bits (94), Expect = 2e-05
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
K++D+ SG+G + + ++ VE+ + ++
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAY 94
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G
joint center for structural genomics, JCSG; HET: MSE;
1.90A {Exiguobacterium sibiricum 255-15}
Length = 243
Score = 39.7 bits (93), Expect = 2e-05
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+ + + ++PG ++ DIG G+G T AD + EVT V+L E+L+ +
Sbjct: 21 PEWVAWVLEQVEPGKRIADIGCGTGTATLLLAD----HYEVTGVDLSEEMLEIAQEKAME 76
Query: 64 GNPEL 68
N +
Sbjct: 77 TNRHV 81
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 39.8 bits (93), Expect = 2e-05
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
L + + +VLD+G G G+L AD G E V+ ++
Sbjct: 45 LLAILG--RQPERVLDLGCGEGWLLRALADR-G--IEAVGVDGDRTLVD 88
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 39.6 bits (92), Expect = 2e-05
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+ +LK KV+D+G G G L + S ++T V++ VL+
Sbjct: 21 VVAVLKS--VNAKKVIDLGCGEGNLLSLLLKD-KSFEQITGVDVSYSVLE 67
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 39.4 bits (92), Expect = 3e-05
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPE 52
+LD+GSG+G T A L G ++ +E
Sbjct: 41 VDGVILDVGSGTGRWTGHLASL----GHQIEGLEPATR 74
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 39.8 bits (92), Expect = 3e-05
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
AL+ ++++ + ++D G GSG L D S + V++ P+ L
Sbjct: 713 ALKHIRES--SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLA 760
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 39.2 bits (92), Expect = 3e-05
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
L+ L +L+PG KVLD+G+GSG L A A+ +G G+ V++ P VL N ++
Sbjct: 111 LKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANAKR 164
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 38.6 bits (90), Expect = 5e-05
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYNI 61
++ LE +K + K LD+G G+G + A +NG +V A + +
Sbjct: 21 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLA----ANGYDVDAWDKNAMSIANVERIK 74
Query: 62 QQGNPELLPNIKFE 75
N L N+
Sbjct: 75 SIEN---LDNLHTR 85
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1;
HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 38.3 bits (89), Expect = 6e-05
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Query: 10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELL 69
+ VLD G+G G + +E+ L+ ++ N
Sbjct: 17 YCNESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENN---- 70
Query: 70 PNIKFEPQTGEGDIQYL 86
+ +GDI+ L
Sbjct: 71 FKLNIS----KGDIRKL 83
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima}
SCOP: c.66.1.41
Length = 219
Score = 38.3 bits (89), Expect = 6e-05
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF-THYNI--QQGNPELLP 70
L P + ++IG G+G VE + + + +G E LP
Sbjct: 45 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKRGVFVLKGTAENLP 97
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding
motif, RNA binding protein; HET: SAM; 2.90A
{Archaeoglobus fulgidus} SCOP: c.66.1.3
Length = 210
Score = 38.4 bits (89), Expect = 6e-05
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+ L+ +VL +G+ SG + AD+V G + AVE + +
Sbjct: 51 HRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFE 95
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 38.2 bits (89), Expect = 7e-05
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+L++ + +LD+ G+G F G+ +EL ++L
Sbjct: 31 ADLVRSRTPEASSLLDVACGTGTHLEHFTKE---FGDTAGLELSEDMLT 76
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 38.0 bits (88), Expect = 8e-05
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ-----FTHYNI 61
++L D VLD+G G G+ A+ +V ++L +L T +
Sbjct: 37 KKMLPD--FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVV 92
Query: 62 --QQGNPELLP 70
+Q E +
Sbjct: 93 CYEQKAIEDIA 103
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 38.1 bits (88), Expect = 9e-05
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 1 MMNARALELLKD--NLKPGAKVLDIGSGSGYLTACFADLVGSNG-----EVTAVELIPEV 53
M+ + ++ + K K+L IG G+G + V + VE E
Sbjct: 35 FMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQ 94
Query: 54 LQFTHYNIQQGNPELLPNIKFE 75
+ + + + L N+KF
Sbjct: 95 IAKYKELVAKTSN--LENVKFA 114
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1; HET: MSE; 1.60A
{Mesorhizobium loti}
Length = 243
Score = 37.9 bits (88), Expect = 1e-04
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
+L + G +++D+G G G+ + S V ++L ++L
Sbjct: 36 RAMLPE--VGGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLAR 81
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 37.8 bits (88), Expect = 1e-04
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
L +KVLDIGSG G + G+ +++ ++
Sbjct: 52 ELNENSKVLDIGSGLGGGCMYINEKYGA--HTHGIDICSNIVNM 93
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 37.3 bits (87), Expect = 1e-04
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
K LD+G+ +GY A + ++G V E+ + + +Q
Sbjct: 72 KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ 116
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 37.1 bits (86), Expect = 2e-04
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQ 55
L++ + A +LD+ G+G AD V +EL ++L
Sbjct: 41 AALVRRHSPKAASLLDVACGTGMHLRHLADS----FGTVEGLELSADMLA 86
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 36.8 bits (86), Expect = 2e-04
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
V+ G G G + FA + + V ++ + ++ +
Sbjct: 59 LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG 105
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 36.9 bits (86), Expect = 2e-04
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
K +++G +GY A + +G++TA++ E + I++
Sbjct: 73 KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG 119
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 36.6 bits (85), Expect = 2e-04
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYNIQQGN 65
+E +N LD+ G+G LT AV+L E+L +
Sbjct: 28 IEKCVENNLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQG 83
Query: 66 PEL 68
+
Sbjct: 84 LKP 86
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 36.6 bits (85), Expect = 3e-04
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
++IG +GY A + +G++ A+++ E + I++
Sbjct: 82 NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG 128
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 36.5 bits (85), Expect = 3e-04
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
++++IG+ +GY + CFA + +G++ ++ E ++
Sbjct: 63 RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE 107
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 36.5 bits (85), Expect = 3e-04
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+VL+IG GY A + +G++ A + P Q+
Sbjct: 75 QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK 119
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 3e-04
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 22/102 (21%)
Query: 5 RALELLKDNLKPGAKVL---DIGSGSGYLTA--CFADLVGSN----------GEVTAVEL 49
+AL L+P VL +GSG ++ C + V + E
Sbjct: 142 QALL----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 50 IPEVLQFTHYNIQQG---NPELLPNIKFEPQTGEGDIQYLLS 88
+ E+LQ Y I + NIK + + +++ LL
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure
initiative; 1.75A {Thermoplasma acidophilum} SCOP:
c.66.1.32
Length = 200
Score = 36.1 bits (83), Expect = 3e-04
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+E+ D G V+D G+G+G L AC + L+G+ VTA ++ P+ ++ N
Sbjct: 42 IEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGA-ESVTAFDIDPDAIETAKRNCGG 96
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 36.1 bits (84), Expect = 4e-04
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
KVL++G+ +GY + + +G+V ++ + H ++
Sbjct: 63 KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE 107
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 36.4 bits (84), Expect = 4e-04
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 8 ELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
+L +++D+G G+G + D +V V+ P + + N++
Sbjct: 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNM 270
Query: 66 PELLPNIKF 74
PE L +F
Sbjct: 271 PEALDRCEF 279
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 36.0 bits (83), Expect = 4e-04
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYNIQQGNPE 67
+D + +VLD+ G+G T A+ G EV ++L E+L+ ++ N +
Sbjct: 34 FKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKERNLK 89
Query: 68 L 68
+
Sbjct: 90 I 90
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 35.9 bits (82), Expect = 6e-04
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK 73
++ G KV+D+ G G + +E E +NI E ++
Sbjct: 91 IREGTKVVDLTGGLGIDFIALM---SKASQGIYIERNDETAVAARHNIPLLLNE-GKDVN 146
Query: 74 F 74
Sbjct: 147 I 147
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 35.3 bits (82), Expect = 7e-04
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
KV+DIG+ +GY + +G + ++ + ++
Sbjct: 67 KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK 111
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 35.3 bits (82), Expect = 7e-04
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+L+IG+ GY T A + S G V +E + NI++
Sbjct: 61 NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER 105
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 35.2 bits (81), Expect = 9e-04
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
L L + + L+IG +G T A +T ++++P +
Sbjct: 40 TQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIG 87
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 34.9 bits (81), Expect = 0.001
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
+L+IG+ GY + FA + + VT +E ++Q+ N+ +
Sbjct: 74 NILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLATYH 119
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 35.0 bits (81), Expect = 0.001
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
++L+IG+ GY T A + ++G++ +E Q N+Q
Sbjct: 66 RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQL 110
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 34.8 bits (81), Expect = 0.001
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 8 ELL--KDNLKPGAKVLDIGSGSGYLTACFADLVGS---NGEVTAVELIPEVLQFTHYNIQ 62
+ K L+ G L+IG+G L+ N +VTA E+ E ++ NI+
Sbjct: 45 RYIFLKTFLRGGEVALEIGTGHT----AMMALMAEKFFNCKVTATEVDEEFFEYARRNIE 100
Query: 63 Q 63
+
Sbjct: 101 R 101
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 34.6 bits (80), Expect = 0.001
Identities = 5/45 (11%), Positives = 16/45 (35%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
+ I +G + + + N +T ++ E + ++
Sbjct: 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFRE 103
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 34.9 bits (80), Expect = 0.001
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 11 KDNLKPGAKVLDIGSGSG---YLTACFADLVGSNGEVTAVEL--IPEVLQFTHYNI 61
+ L+ +VLD+G G G Y A +++ G +E P +Q +NI
Sbjct: 76 RGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNI 131
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1;
structural genomics, riken structural
genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex
aeolicus} PDB: 3axt_A*
Length = 392
Score = 34.8 bits (79), Expect = 0.001
Identities = 13/58 (22%), Positives = 20/58 (34%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
LE L L KV D S SG F + A ++ + ++ N +
Sbjct: 42 GLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL 99
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 34.2 bits (79), Expect = 0.002
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 8 ELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
++L +N+ +LD+G G G + AD T ++ ++ NI+ N
Sbjct: 42 KILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNN 98
Query: 66 PE 67
+
Sbjct: 99 LD 100
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 34.2 bits (78), Expect = 0.002
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQ 55
A L LL+ +VLD+ G+G + + G VT+V+ ++L+
Sbjct: 47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLK 93
>2kw5_A SLR1183 protein; structural genomics, northeast structural
genomics consortium (NESG), PSI-2, protein structure
initiative, unknown function; NMR {Synechocystis} PDB:
3mer_A
Length = 202
Score = 34.1 bits (78), Expect = 0.002
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQ 55
P K+L + G G A S G EVTAV+ L
Sbjct: 29 PQGKILCLAEGEGRNACFLA----SLGYEVTAVDQSSVGLA 65
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 33.3 bits (77), Expect = 0.004
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFA 35
NL+PG +LDIG G G A
Sbjct: 69 NLEPGMTLLDIGCGWGST-MRHA 90
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 33.4 bits (76), Expect = 0.004
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI 72
V+D G G T FA + V A+++ P + N + + I
Sbjct: 75 QSFKCDVVVDAFCGVGGNTIQFAL---TGMRVIAIDIDPVKIALARNNAEVYG--IADKI 129
Query: 73 KFE 75
+F
Sbjct: 130 EFI 132
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 33.0 bits (76), Expect = 0.005
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFA 35
+LKPG +LDIG G G A
Sbjct: 87 DLKPGMTLLDIGCGWGTT-MRRA 108
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 32.9 bits (76), Expect = 0.005
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFA 35
L+PG +LD+G G G A
Sbjct: 61 GLQPGMTLLDVGCGWGAT-MMRA 82
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics,
transferase; HET: SAH; 2.20A {Pyrococcus horikoshii}
SCOP: c.66.1.32
Length = 207
Score = 33.1 bits (75), Expect = 0.005
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
G V D+G+G+G L+ L EV VE+ E + N+ +
Sbjct: 50 GKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGE 94
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 33.3 bits (76), Expect = 0.005
Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
+ + V+D+ +G G F+ + ++ A+++ P ++ NI+
Sbjct: 189 IMKKVSLNDVVVDMFAGVGP----FSIACKNAKKIYAIDINPHAIELLKKNIK 237
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 33.2 bits (75), Expect = 0.005
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 9 LLKDNLKPGAKVLDIGSGSG-----YLTACFADLVG 39
L++ K G VLD+G G G Y A + G
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYG 92
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 32.6 bits (74), Expect = 0.007
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ-----F 56
+ A+ E L D VLDIG G GY T FAD +++ ++ +
Sbjct: 74 IVAQLRERLDD---KATAVLDIGCGEGYYTHAFAD-ALPEITTFGLDVSKVAIKAAAKRY 129
Query: 57 THYNIQQGNPELLP 70
+ LP
Sbjct: 130 PQVTFCVASSHRLP 143
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET:
SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A*
3pb3_A* 3mte_A*
Length = 225
Score = 32.5 bits (73), Expect = 0.007
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTH-YNIQQGNPELLPNIKFEPQT 78
+D+G+G G A N ++ + E L I++ + L N+ F
Sbjct: 28 HIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAA 86
Query: 79 GE 80
E
Sbjct: 87 AE 88
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 32.6 bits (74), Expect = 0.008
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67
E L G +VLD+G+G G LT A + EV VE + ++ +
Sbjct: 225 ERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK 281
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 32.8 bits (74), Expect = 0.008
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADL-VGSNGEVTAVELIPEVLQFTHYNIQQ-G 64
K++D G+ G A + G V +E LQ +++
Sbjct: 217 FRSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT 276
Query: 65 NPELLPNIKFEP 76
+ I
Sbjct: 277 DTNFASRITVHG 288
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 32.4 bits (74), Expect = 0.008
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 8 ELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVE 48
+LL L KVLD+G G+G L + +T +
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVL-SVAFARHSPKIRLTLCD 227
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 32.4 bits (73), Expect = 0.009
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYNIQQ 63
N V D +G G + A S G VTA E P V I++
Sbjct: 80 NHTAHPTVWDATAGLGRDSFVLA----SLGLTVTAFEQHPAVACLLSDGIRR 127
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 32.3 bits (73), Expect = 0.009
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+ L+ + P + L G G G+ A V +++ L
Sbjct: 57 VHLVDTSSLPLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALA 102
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 32.1 bits (74), Expect = 0.010
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGS---NGEVTAVELIPEVLQFTHYNIQ 62
AL L + ++LD+G+G+G A + S + E+ AV+ +P+ + N Q
Sbjct: 102 ALARLPEQ---PCRILDLGTGTG----AIALALASERPDCEIIAVDRMPDAVSLAQRNAQ 154
Query: 63 QGNPELLPNIKF 74
+ NI
Sbjct: 155 HLA---IKNIHI 163
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 32.1 bits (74), Expect = 0.010
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 13 NLKPGAKVLDIGSGSGYLT-ACFADLVGSNGEVTAVEL 49
+ G ++++IG G G LT A L + AVEL
Sbjct: 39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVEL 76
>2ldu_A Heat shock factor protein 1; structural genomics, northeast
structural genomics consortiu DNA-binding, PSI-biology,
protein structure initiative; NMR {Homo sapiens}
Length = 125
Score = 31.6 bits (72), Expect = 0.011
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 38 VGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK 73
V + V+ + +F H +G +LL NIK
Sbjct: 83 VVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIK 118
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 32.1 bits (73), Expect = 0.012
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 7 LELLKDNLKPGAKVLDIGSGSG 28
++ L P ++D G G G
Sbjct: 109 MDHLGQ-AGPDDTLVDAGCGRG 129
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 31.8 bits (73), Expect = 0.013
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
++L+IG+ GY A + ++E + H +++
Sbjct: 57 RILEIGTAIGYSAIRMA-QALPEATIVSIERDERRYEEAHKHVKALG 102
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 31.3 bits (72), Expect = 0.018
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
ALEL++ V DIG+GSG + A S+ V A ++ + ++ N ++
Sbjct: 115 ALELIRK--YGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAER 168
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 31.5 bits (72), Expect = 0.018
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVE----LIPEVLQFTHYNIQQGNPEL 68
L+P VL++G G+G +T L+ +V A E L+ E+ + ++
Sbjct: 25 ALRPTDVVLEVGPGTGNMT---VKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQV 81
Query: 69 L 69
L
Sbjct: 82 L 82
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 31.4 bits (70), Expect = 0.021
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYN 60
+ L + + + V D+G G T + N ++ ++ +++ +
Sbjct: 44 IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQH 103
Query: 61 IQQGNPE 67
I + E
Sbjct: 104 IAAYHSE 110
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 31.2 bits (70), Expect = 0.021
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGS---NGEVTAVELIPEVLQFTHYNIQQ 63
+ + + +DIG+G+ C L+G+ A E+ + N++Q
Sbjct: 56 IGHQDSDKSTLRRGIDIGTGAS----CIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ 111
Query: 64 GNPELLPNIKFEPQTGEGDI 83
N L IK + +
Sbjct: 112 NN--LSDLIKVVKVPQKTLL 129
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 31.2 bits (71), Expect = 0.025
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTAC-FADLVGSNG-EVTAVELIPEV 53
+++ K G +V+ + + Y A A+ + + G EVT V +
Sbjct: 517 PEQVMDGKKKIGKRVVILNAD-TYFMAPSLAEKLATAGHEVTIVSGVHLA 565
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 31.2 bits (70), Expect = 0.026
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+ ++ LD G+G G +T + +E + +L+
Sbjct: 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLE 130
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 31.2 bits (70), Expect = 0.028
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
+L VLD+G G+G L + FA G+ V V++ +
Sbjct: 35 DLFKDKIVLDVGCGTGIL-SMFAAKHGAK-HVIGVDMSSII 73
>1hks_A Heat-shock transcription factor; transcription regulation; NMR
{Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Length = 106
Score = 30.0 bits (68), Expect = 0.032
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 51 PEVLQFTHYNIQQGNPELLPNIK 73
+ ++F+H ++ +P LL IK
Sbjct: 82 RDEIEFSHPFFKRNSPFLLDQIK 104
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 30.7 bits (69), Expect = 0.033
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 11 KDNLKPGAKVLDIGSGSG---YLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
+ +K +V+D+G G G Y A ++ G G + + +
Sbjct: 69 RGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLG 121
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 30.6 bits (70), Expect = 0.037
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSG 28
A+ LK + G +V+D+G+GSG
Sbjct: 21 AIRFLK-RMPSGTRVIDVGTGSG 42
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 30.7 bits (70), Expect = 0.038
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
VL++G+ GY A L+ + +E+ P+ T +
Sbjct: 61 LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF 105
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping;
HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP:
c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A*
2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A*
1g38_A*
Length = 421
Score = 30.8 bits (69), Expect = 0.042
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
G +VL+ G F + G+ VE+ P+ L +
Sbjct: 36 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWA 83
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 30.6 bits (68), Expect = 0.046
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
+ G VLD+G+GSG L A +V AVE
Sbjct: 60 HHFEGKTVLDVGTGSGILAIWSAQ--AGARKVYAVEATK 96
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 30.0 bits (67), Expect = 0.064
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
++ VLD+G G+G L + FA G +V V+ + Q
Sbjct: 61 HIFKDKVVLDVGCGTGIL-SMFAAKAG-AKKVLGVDQSEILYQ 101
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli}
SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 29.8 bits (68), Expect = 0.069
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
N + G +++IG G LT + ++T +EL
Sbjct: 18 NPQKGQAMVEIGPGLAALT---EPVGERLDQLTVIEL 51
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 29.9 bits (67), Expect = 0.073
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL 68
+ KVLD+G G G + + L +VT+ + + F + ++ N +
Sbjct: 117 KIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENLNI 169
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein
synthesis; 1.98A {Coxiella burnetii}
Length = 255
Score = 29.8 bits (68), Expect = 0.078
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
+ + +++IG G G LT L+ + VE+
Sbjct: 26 HPQKTDTLVEIGPGRGALT---DYLLTECDNLALVEI 59
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 29.9 bits (67), Expect = 0.080
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
+ KP V+D+ +G G+L+ A V +V A+E P +F NI
Sbjct: 119 MAKVAKPDELVVDMFAGIGHLSLPIA--VYGKAKVIAIEKDPYTFKFLVENIH 169
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 29.7 bits (66), Expect = 0.091
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
L G +D+G+ G T LV N V +V+ P
Sbjct: 209 LANGMWAVDLGACPGGWTYQ---LVKRNMWVYSVDNGP 243
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 29.6 bits (66), Expect = 0.094
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
L VLD+GSG+G L FA G+ +V +E
Sbjct: 64 LFKDKVVLDVGSGTGIL-CMFAAKAGAR-KVIGIECSS 99
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB:
3epp_A*
Length = 313
Score = 29.5 bits (65), Expect = 0.12
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSG-----YLTACFADLVG 39
LE ++ K VLD+G G G + LV
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVC 62
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 29.3 bits (65), Expect = 0.12
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
+ N + LD G+G G +T L+ EV V++ + L
Sbjct: 68 QRFLREGPNKTGTSCALDCGAGIGRITKRL--LLPLFREVDMVDITEDFLV 116
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH;
2.70A {Vaccinia virus}
Length = 302
Score = 29.4 bits (65), Expect = 0.13
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 5 RALELLKDNLKPGAKVLDIGSGSG-----YLTACFADLVGSNGEVTAVE 48
+ KVL I G+G Y A LV ++ + A+
Sbjct: 37 MYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIA 85
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 29.0 bits (65), Expect = 0.13
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
A+AL L + +PG +VLD +GSG + A +G V A +L + L
Sbjct: 192 AQAL-LRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA 250
Query: 64 GNPELLPNIKFE 75
L I+F
Sbjct: 251 SG---LSWIRFL 259
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 29.4 bits (65), Expect = 0.13
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
A+ ++ + + +D+GSG G + A VE ++ ++
Sbjct: 163 AQMIDEI--KMTDDDLFVDLGSGVGQVVLQVAAATNC-KHHYGVEKADIPAKYAETMDRE 219
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 28.9 bits (65), Expect = 0.14
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
+K VL+IG G+G LT L+ +V +++
Sbjct: 39 KIKSSDIVLEIGCGTGNLT---VKLLPLAKKVITIDI 72
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 29.0 bits (66), Expect = 0.15
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 23/90 (25%)
Query: 4 ARA----LELL-KDN-LKPGAKVLDIGSGSG----YLTACFADLVGSNGEVTAVELIP-- 51
+RA E+ D KPG V+D+G+ G Y+ +G G + A +L+P
Sbjct: 4 SRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYV----VTQIGGKGRIIACDLLPMD 59
Query: 52 -----EVLQ--FTHYNIQQGNPELLPNIKF 74
+ LQ F + + E + + K
Sbjct: 60 PIVGVDFLQGDFRDELVMKALLERVGDSKV 89
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 28.4 bits (63), Expect = 0.23
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
VLD+G GSG L+ A ++ AVE
Sbjct: 48 DFKDKIVLDVGCGSGILSFFAAQ--AGARKIYAVEAST 83
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR
{Streptococcus pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 28.3 bits (64), Expect = 0.24
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
NLK V +IG+G G+LT L + +VT++EL
Sbjct: 26 NLKETDTVYEIGTGKGHLT---TKLAKISKQVTSIEL 59
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 28.5 bits (64), Expect = 0.26
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 6 ALELLKD-NLKPGAKVLDIGSGSGYL 30
A + L P +++IG G +
Sbjct: 96 ARDFLATELTGPDPFIVEIGCNDGIM 121
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 28.4 bits (64), Expect = 0.26
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 4 ARALELLKDNLKPGAKVLDI 23
+ E +PG +L++
Sbjct: 14 KKVREKAIKLARPGMLLLEL 33
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 28.4 bits (64), Expect = 0.27
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
NL VL+IG G G LT +L + +V +E+
Sbjct: 47 NLTKDDVVLEIGLGKGILT---EELAKNAKKVYVIEI 80
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 28.2 bits (63), Expect = 0.32
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 4 ARALELLKDNLKPGAKVLDI 23
RA ++ ++PG +L+I
Sbjct: 58 RRARYRVQSIVRPGITLLEI 77
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 28.0 bits (62), Expect = 0.34
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 4 ARALELLKDNLKPGAKVLDI 23
+ + + +KPG +++I
Sbjct: 177 RQVRKYVMSWIKPGMTMIEI 196
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 27.9 bits (63), Expect = 0.34
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
L + +IGSG G+ T +LV VTA+E+
Sbjct: 27 RLNEHDNIFEIGSGKGHFT---LELVQRCNFVTAIEI 60
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 28.0 bits (63), Expect = 0.35
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGYLTAC-FADLVGSNG-EVTAVE 48
+L L G KV+ Y A+L+ G EV+ V
Sbjct: 512 PDDLFAGRLPDGKKVVVYDDD-HYYLGGVVAELLAQKGYEVSIVT 555
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 28.2 bits (62), Expect = 0.35
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
VLD+G GSG L+ A ++ AVE
Sbjct: 156 DFKDKIVLDVGCGSGILSFFAAQ--AGARKIYAVEAST 191
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 27.4 bits (61), Expect = 0.55
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
L + +V+D+ + G T + + + G + A E ++ H NI
Sbjct: 109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANIS 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.72
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 29/88 (32%)
Query: 4 ARAL-ELLKDNLKPGA---KVLDIGS---------GSGYLTACFADLVGSNGEVTAVELI 50
A L EL++ L + L+I YL + LI
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP----------LI 241
Query: 51 PEVLQFTHYNI---QQG-NP-ELLPNIK 73
V+Q HY + G P EL +K
Sbjct: 242 -GVIQLAHYVVTAKLLGFTPGELRSYLK 268
Score = 25.8 bits (56), Expect = 2.5
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 26/96 (27%)
Query: 2 MNA---RALELLKDNLKPGAKVLDIGSGSGYLTA-----CFA--------DLVGSNGEVT 45
M+A R L L +L+ V + + A F + T
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLV----PTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 46 AVELIPEVLQFTHYNIQQGNP----ELLPNI--KFE 75
EL+ + L + ++ ++L +FE
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Score = 24.2 bits (52), Expect = 6.8
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 42 GEVTAVELIPEVLQF 56
G++ A++ + VL F
Sbjct: 1857 GDLRALDTVTNVLNF 1871
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 27.0 bits (60), Expect = 0.74
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 4 ARALELLKDNLKPGAKVLDI 23
R L L + G VL +
Sbjct: 36 NRVLRSLVEASSSGVSVLSL 55
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 26.9 bits (60), Expect = 0.75
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 21/71 (29%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI 72
++ G + + A D+ G N + + Y+I G+ L I
Sbjct: 227 DVVLGTAIGRV-------KANDQDI-GENAQSS-------------YDIIDGDGTALFEI 265
Query: 73 KFEPQTGEGDI 83
+ Q +G I
Sbjct: 266 TSDAQAQDGVI 276
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 26.9 bits (60), Expect = 0.80
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 14 LKPGAKVLDIGSGSG 28
G + +D+G+G G
Sbjct: 63 YLQGERFIDVGTGPG 77
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal,
antibiotic resistance, aminoglycoside,
S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces
SP}
Length = 218
Score = 26.6 bits (58), Expect = 0.91
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 20 VLDIGSGSGYLTACFADLVGSNGE--VTAVELIPEVLQFTHYNI-QQGNPELLPNIKFEP 76
VLD+G+G G A N V A++ ++ + LPN+ +
Sbjct: 31 VLDVGTGDGKHPYKVA---RQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLW 87
Query: 77 QTGEGDIQYLL 87
+ L
Sbjct: 88 ----ATAERLP 94
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 26.5 bits (59), Expect = 1.1
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 13 NLKPGAKVLDIGSGSG 28
+ + D+G+G+G
Sbjct: 67 DFNQVNTICDVGAGAG 82
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 26.5 bits (59), Expect = 1.1
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
+ + L + KPG V+D+ + G T A+L+ + G++ A ++
Sbjct: 249 AVASIVL-----DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDV 292
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 26.2 bits (58), Expect = 1.2
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 13 NLKPGAKVLDIGSGSGY----LTACFADLVGSNGEVTAVE 48
+ +VLD+G+G+G+ L +L E+ V+
Sbjct: 77 LWQGPLRVLDLGTGAGFPGLPLKIVRPEL-----ELVLVD 111
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 26.5 bits (59), Expect = 1.2
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
+ A L + PG+ V+D + G T+ A L+ + G++ A +L
Sbjct: 92 CLPAMLL-----DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDL 135
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 26.3 bits (57), Expect = 1.3
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67
+ N+K + +LD G G L + A ++ + F I +
Sbjct: 41 TYVFGNIKHVSSILDFGCGFNPLALYQWNE-NEKIIYHAYDIDRAEIAFLSSIIGKLKTT 99
Query: 68 L---LPNIKFEPQTGEGDIQYLL 87
+ N + + G D+ +LL
Sbjct: 100 IKYRFLNKESDVYKGTYDVVFLL 122
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 26.1 bits (58), Expect = 1.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 58 HYNIQQGNPELLPNIKFEPQTGEGDI 83
Y I G+P I +P + +G +
Sbjct: 260 AYRISGGDPTGRFAILTDPNSNDGLV 285
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold,
rossmann-fold, structural genomics, PSI-2, structure
initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Length = 261
Score = 26.0 bits (56), Expect = 1.6
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFAD 36
+ R ++ +N+ PG+ V IG+ + +L +
Sbjct: 32 SDRENDIFLENIVPGSTVAVIGASTRFLIEKALE 65
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 25.7 bits (57), Expect = 2.0
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 6 ALELLKDNLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
L++L+D G KV IG G G+ TA + G + E + G
Sbjct: 483 YLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGG 542
Query: 65 NPELLPNIKFEP 76
I P
Sbjct: 543 LSPQGMQIPRSP 554
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 25.6 bits (57), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 35 ADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL 68
A+LV S GE++ EL+ + ++Q NPE+
Sbjct: 14 AELVRS-GEISRTELLEATIA----HVQAVNPEI 42
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 25.6 bits (57), Expect = 2.4
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQF 56
+K G+ V +G G G LT A L G+ V +
Sbjct: 179 GIKAGSTVAILGGGVIGLLTVQLARLAGA-TTVILSTRQATKRRL 222
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 25.4 bits (56), Expect = 2.5
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 8/83 (9%)
Query: 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
+ L ++LDIG +G EVT V+L P+ L+
Sbjct: 164 SDQSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQ 221
Query: 61 IQQGNPELLPNIKFEPQTGEGDI 83
I ++
Sbjct: 222 TAG--LSGSERIHGHG----ANL 238
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 25.5 bits (56), Expect = 2.5
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 44 VTAVELIPEVLQFTHYNIQQGNP 66
+T V+L P V +F + Q +
Sbjct: 483 ITTVQLQP-VEEFNSIDETQPDT 504
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 25.4 bits (56), Expect = 2.6
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 4 ARALELLKDNLKPGAKVLDIGS 25
+E LK L + D+ S
Sbjct: 79 LETIERLKPYLTENMLLADLTS 100
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 25.3 bits (55), Expect = 2.7
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 6/38 (15%)
Query: 15 KPGAKVLDIGSGSGYLTACFA------DLVGSNGEVTA 46
V D G G L + DL + VT
Sbjct: 66 PASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTV 103
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 25.2 bits (56), Expect = 2.8
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 14/53 (26%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVG----SNG--EVTAVELIPEVLQFTHYNIQ 62
++ LD +GSG L G S +VT +EL V N+Q
Sbjct: 53 HQSECLDGFAGSGSL--------GFEALSRQAKKVTFLELDKTVANQLKKNLQ 97
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex
aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 25.1 bits (56), Expect = 2.9
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
N++ G V+++G G+G LT ++ +EL
Sbjct: 28 NIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIEL 62
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 24.9 bits (55), Expect = 3.3
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 24/103 (23%)
Query: 4 ARA----LELL-KDN-LKPGAKVLDIGSGSG----YLTACFADLVGS-NGEVTAVELIP- 51
+RA +EL K LK +LDIG G + + + ++ ++
Sbjct: 4 SRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVI----LERTKNYKNKIIGIDKKIM 59
Query: 52 ------EVLQ--FTHYNIQQGNPELLPNIKFEPQTGEGDIQYL 86
+Q N+ + + L
Sbjct: 60 DPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEIL 102
>2kzs_A Death-associated protein 6; helical bundle,DHB domain, FAS
death-domain associated prote rassf1C interacting
domain, apoptosis; NMR {Homo sapiens} PDB: 2kzu_A
Length = 94
Score = 24.7 bits (53), Expect = 3.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 51 PEVLQFTHYNIQQGNPELLPNIKF 74
PEV+ F + Q+ + L + +F
Sbjct: 32 PEVVPFLYNRQQRAHSLFLASAEF 55
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA
crystallography structure, oxidoreductase; HET: OMT
NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 24.8 bits (55), Expect = 3.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 7 LELLKDNLKPGAKVLDIGS 25
LE L +L P A V D+ S
Sbjct: 74 LEKLIPHLSPTAIVTDVAS 92
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 24.8 bits (55), Expect = 3.7
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
+ +K++++ + + IG G L L + V + L
Sbjct: 133 ADRIKESIENSGEAIIIGGGFIGLELAGN-LAEAGYHVKLIHRGAMFLGL 181
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 24.8 bits (55), Expect = 3.9
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 14/53 (26%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVG----SNG--EVTAVELIPEVLQFTHYNIQ 62
G VLD+ +GSG L G S G V VE NI+
Sbjct: 44 TGLAVLDLYAGSGAL--------GLEALSRGAASVLFVESDQRSAAVIARNIE 88
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 25.1 bits (55), Expect = 4.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 9 LLKDNLKPGAKVLDIGSGSGYLTACFAD 36
LLK + G KV+D GS +C+
Sbjct: 232 LLKQQGRSGIKVIDFGS------SCYEH 253
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 24.9 bits (53), Expect = 4.2
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVG--SNGEVTAVELIPEVLQFTH 58
+++ + +L L + D +GSG L A + ++ A ++ L+
Sbjct: 306 VLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLS 365
Query: 59 YNIQQGNPELL-----PNIKFE 75
+ P+L+ P I E
Sbjct: 366 IRLGLLFPQLVSSNNAPTITGE 387
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine
type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET:
ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A*
Length = 453
Score = 24.8 bits (54), Expect = 4.7
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 29/87 (33%)
Query: 1 MMNARALEL-LKD------------NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAV 47
+MN +A + +K+ L+ A TA D + +
Sbjct: 183 LMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTA--RDYA-----ILDL 235
Query: 48 ELI---PEVL------QFTHYNIQQGN 65
+I P++L T + +
Sbjct: 236 HVIKETPKILDFTKQLAPTTHAVTYYT 262
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 24.5 bits (54), Expect = 4.8
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 7 LELLKDNLKPGAKVLDIGS 25
+ L L A V D GS
Sbjct: 111 AKKLSYILSEDATVTDQGS 129
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 24.5 bits (54), Expect = 4.8
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 7 LELLKDNLKPGAKVLDIGS 25
+ L L A V D GS
Sbjct: 79 AKKLSYILSEDATVTDQGS 97
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 24.6 bits (53), Expect = 5.1
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 4 ARALELLKDNLKPGAKVLDIGSGS 27
+ E + ++PG VL + + +
Sbjct: 81 EKVAEDIVPRVRPGTIVLILDAAA 104
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP:
c.66.1.46
Length = 177
Score = 24.4 bits (54), Expect = 5.1
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 14/53 (26%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVG----SNG--EVTAVELIPEVLQFTHYNIQ 62
G +VLD+ +GSG L S G VE + NI
Sbjct: 31 NGGRVLDLFAGSGGL--------AIEAVSRGMSAAVLVEKNRKAQAIIQDNII 75
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 24.2 bits (53), Expect = 5.7
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 16/64 (25%)
Query: 20 VLDIGSGSGYLTACFA------DLVGSNGEVTAVELIPEVLQFTHYNIQ---QGNPELLP 70
DIG G G L + ++G +E+ +V + I+
Sbjct: 50 FADIGCGYGGLLVELSPLFPDTLILG-------LEIRVKVSDYVQDRIRALRAAPAGGFQ 102
Query: 71 NIKF 74
NI
Sbjct: 103 NIAC 106
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 24.5 bits (53), Expect = 5.8
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 21 LDIGSGSGYLTACFADLVGSNGEVTAVELI 50
L G G A A V G+ I
Sbjct: 521 LTCGQGRFGADAIIAVYVNRKGDFIRDYKI 550
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 24.3 bits (53), Expect = 5.8
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 15 KPGAKVLDIGSGSGYLTACFADLVGSNG 42
K +LD G+ L + + G
Sbjct: 129 KKNVSILDPACGTANLLTTVINQLELKG 156
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 24.4 bits (54), Expect = 6.5
Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 6 ALELLKDNLKPGAKVLDIGSGSGY 29
AL LK+ + G ++ ++G+G+GY
Sbjct: 254 ALRKLKE--QCGCRIYNLGTGTGY 275
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 24.3 bits (53), Expect = 6.5
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 9 LLKDNLKPGAKVLDIGSGSGYLTACFAD 36
LL + + K++D GS +C
Sbjct: 191 LLCNPKRSAIKIVDFGS------SCQLG 212
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 24.0 bits (53), Expect = 6.6
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 14/53 (26%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVG----SNG--EVTAVELIPEVLQFTHYNIQ 62
G LD+ SGSG L S G + +E L+ NI
Sbjct: 44 DGGMALDLYSGSGGL--------AIEAVSRGMDKSICIEKNFAALKVIKENIA 88
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 24.1 bits (53), Expect = 7.1
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 14/53 (26%)
Query: 16 PGAKVLDIGSGSGYLTACFADLVG----SNG--EVTAVELIPEVLQFTHYNIQ 62
A+ LD +GSG L G S T +E+ V Q N+
Sbjct: 54 VDAQCLDCFAGSGAL--------GLEALSRYAAGATLIEMDRAVSQQLIKNLA 98
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc
target, SAV0642, PSI, protein structure initiative;
2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Length = 369
Score = 24.3 bits (53), Expect = 7.1
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 29/87 (33%)
Query: 1 MMNARALEL-LKD------------NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAV 47
+MN +A + +K+ L+ A TA D + +
Sbjct: 147 LMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTA--RDYA-----ILDL 199
Query: 48 ELI---PEVL------QFTHYNIQQGN 65
+I P++L T + +
Sbjct: 200 HVIKETPKILDFTKQLAPTTHAVTYYT 226
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 24.3 bits (53), Expect = 7.3
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 13 NLKPGAKVLDIGSGSGYLTACFA 35
V+D+ G G A
Sbjct: 176 VFARARTVIDLAGGHGTYLAQVL 198
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial
transcription factor, transcription initiation; 2.60A
{Saccharomyces cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 24.1 bits (52), Expect = 7.5
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 11 KDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
KVLD+ G G +A F + + + +E
Sbjct: 53 TYKHPEELKVLDLYPGVGIQSAIFYNK-YCPRQYSLLEK 90
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 24.0 bits (52), Expect = 9.0
Identities = 4/9 (44%), Positives = 6/9 (66%)
Query: 65 NPELLPNIK 73
+ LLP +K
Sbjct: 58 DNYLLPGVK 66
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 23.6 bits (52), Expect = 9.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 11 KDNLKPGAKVLDIG 24
D ++PGA V+D+G
Sbjct: 219 ADMVRPGAAVIDVG 232
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 23.7 bits (51), Expect = 9.6
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 34 FADLVGSNGEVTAVEL 49
+ LV ++ A +L
Sbjct: 11 SSGLVPRGSDIDATQL 26
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 23.7 bits (52), Expect = 9.7
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
L + G +LD+ + G T ++ +V AV++ +
Sbjct: 236 QGCMTWL-----APQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQ 281
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.137 0.392
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,373,042
Number of extensions: 72825
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 230
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.9 bits)