BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8027
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IV9|A Chain A, B2-Appendage From Ap2 In Complex With Eps15 Peptide
pdb|2IV9|B Chain B, B2-Appendage From Ap2 In Complex With Eps15 Peptide
pdb|2IV8|A Chain A, Beta Appendage In Complex With B-Arrestin Peptide
Length = 238
Score = 293 bits (749), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 182/245 (74%), Gaps = 16/245 (6%)
Query: 2 YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61
Y PK WLPA K KG+EI GTF+ + G I ME+ FTNK++ M +FAIQ NK
Sbjct: 8 YVAPKAVWLPAVKAKGLEISGTFTHRQ-------GHIYMEMNFTNKALQHMTDFAIQFNK 60
Query: 62 NSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACI 121
NSFG+ P+ PL + +PL+P+ S++ SLP+ T G V +MEPL NLQVAVKNN+DVFYF+C+
Sbjct: 61 NSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCL 120
Query: 122 VPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQ 181
+P+NV F+EDG+MER+ FL TWK+IP +NE +QF + L AD + S+++
Sbjct: 121 IPLNVLFVEDGKMERQVFLATWKDIPNENE---------LQFQIKECHLNADTVSSKLQN 171
Query: 182 NNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHA 241
NNV+TIAKRNVEG+DMLYQSL+LTNGIW+L EL+IQPG+P+ TLSLK R+ +V+Q I+
Sbjct: 172 NNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV 231
Query: 242 YDAIL 246
YD+IL
Sbjct: 232 YDSIL 236
>pdb|3H1Z|A Chain A, Molecular Basis For The Association Of Pipkigamma -P90
With The Clathrin Adaptor Ap-2
pdb|3HS9|A Chain A, Intersectin 1-Peptide-Ap2 Beta Ear Complex
Length = 260
Score = 292 bits (748), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 182/245 (74%), Gaps = 16/245 (6%)
Query: 2 YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61
Y PK WLPA K KG+EI GTF+ + G I ME+ FTNK++ M +FAIQ NK
Sbjct: 30 YVAPKAVWLPAVKAKGLEISGTFTHRQ-------GHIYMEMNFTNKALQHMTDFAIQFNK 82
Query: 62 NSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACI 121
NSFG+ P+ PL + +PL+P+ S++ SLP+ T G V +MEPL NLQVAVKNN+DVFYF+C+
Sbjct: 83 NSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCL 142
Query: 122 VPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQ 181
+P+NV F+EDG+MER+ FL TWK+IP +NE +QF + L AD + S+++
Sbjct: 143 IPLNVLFVEDGKMERQVFLATWKDIPNENE---------LQFQIKECHLNADTVSSKLQN 193
Query: 182 NNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHA 241
NNV+TIAKRNVEG+DMLYQSL+LTNGIW+L EL+IQPG+P+ TLSLK R+ +V+Q I+
Sbjct: 194 NNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV 253
Query: 242 YDAIL 246
YD+IL
Sbjct: 254 YDSIL 258
>pdb|1E42|A Chain A, Beta2-Adaptin Appendage Domain, From Clathrin Adaptor Ap2
pdb|1E42|B Chain B, Beta2-Adaptin Appendage Domain, From Clathrin Adaptor Ap2
pdb|2G30|A Chain A, Beta Appendage Of Ap2 Complexed With Arh Peptide
Length = 258
Score = 292 bits (747), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 182/245 (74%), Gaps = 16/245 (6%)
Query: 2 YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61
Y PK WLPA K KG+EI GTF+ + G I ME+ FTNK++ M +FAIQ NK
Sbjct: 28 YVAPKAVWLPAVKAKGLEISGTFTHRQ-------GHIYMEMNFTNKALQHMTDFAIQFNK 80
Query: 62 NSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACI 121
NSFG+ P+ PL + +PL+P+ S++ SLP+ T G V +MEPL NLQVAVKNN+DVFYF+C+
Sbjct: 81 NSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCL 140
Query: 122 VPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQ 181
+P+NV F+EDG+MER+ FL TWK+IP +NE +QF + L AD + S+++
Sbjct: 141 IPLNVLFVEDGKMERQVFLATWKDIPNENE---------LQFQIKECHLNADTVSSKLQN 191
Query: 182 NNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHA 241
NNV+TIAKRNVEG+DMLYQSL+LTNGIW+L EL+IQPG+P+ TLSLK R+ +V+Q I+
Sbjct: 192 NNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV 251
Query: 242 YDAIL 246
YD+IL
Sbjct: 252 YDSIL 256
>pdb|1G72|A Chain A, Catalytic Mechanism Of Quinoprotein Methanol
Dehydrogenase: A Theoretical And X-Ray Crystallographic
Investigation
pdb|1G72|C Chain C, Catalytic Mechanism Of Quinoprotein Methanol
Dehydrogenase: A Theoretical And X-Ray Crystallographic
Investigation
Length = 573
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 114 DVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGAD 173
D+ Y P N Y + + + W+ P Q+ A+ CC V +A GA
Sbjct: 65 DMMYVHSAFPNNTYALNLNDPGK----IVWQHKPKQDASTKAVMCCDV--VDRGLAYGAG 118
Query: 174 AIVSRMKQNNVFTIAKR 190
IV + ++ + +
Sbjct: 119 QIVKKQANGHLLALDAK 135
>pdb|4AAH|A Chain A, Methanol Dehydrogenase From Methylophilus W3a1
pdb|4AAH|C Chain C, Methanol Dehydrogenase From Methylophilus W3a1
pdb|2AD6|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C)
pdb|2AD6|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C)
pdb|2AD7|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Methanol
pdb|2AD7|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Methanol
pdb|2AD8|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Ethanol
pdb|2AD8|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
(Form C) In The Presence Of Ethanol
Length = 571
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 114 DVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGAD 173
D+ Y P N Y + + + W+ P Q+ A+ CC V +A GA
Sbjct: 63 DMMYVHSAFPNNTYALNLNDPGK----IVWQHKPKQDASTKAVMCCDV--VDRGLAYGAG 116
Query: 174 AIVSRMKQNNVFTIAKR 190
IV + ++ + +
Sbjct: 117 QIVKKQANGHLLALDAK 133
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 111 NNLDVFYFACIVPIN----VYFMEDGEMERKTFLTTWKEIPTQNED 152
N+L+ F + C P N V + +G + R+ WKEIP ++ED
Sbjct: 514 NSLEYFKWLCEDPDNSLVFVGYQAEGSLGRR-IQKGWKEIPLKDED 558
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,186,394
Number of Sequences: 62578
Number of extensions: 271688
Number of successful extensions: 646
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 8
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)