Query psy8027
Match_columns 250
No_of_seqs 99 out of 105
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 16:34:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g30_A AP-2 complex subunit be 100.0 6E-74 2.1E-78 516.5 27.4 231 2-248 28-258 (258)
2 3hs8_A Adaptor protein complex 99.0 2.9E-08 1E-12 89.6 19.0 205 18-244 57-271 (273)
3 1kyf_A Alpha-adaptin C; protei 98.7 1.1E-06 3.7E-11 78.0 19.2 196 35-245 41-246 (247)
4 1r4x_A Gamma1-COP, coatomer ga 97.3 0.0011 3.7E-08 59.9 9.6 198 35-242 57-274 (275)
5 1pzd_A Coatomer gamma subunit; 97.0 0.0047 1.6E-07 56.8 11.0 199 35-242 104-321 (322)
6 3mnm_A ADP-ribosylation factor 91.5 0.22 7.7E-06 39.3 4.8 60 14-81 15-75 (123)
7 3zy7_A AP-1 complex subunit ga 89.7 0.36 1.2E-05 38.0 4.5 44 14-61 11-54 (122)
8 2e9g_A AP-1 complex subunit ga 89.5 0.45 1.5E-05 37.9 4.9 44 14-61 20-63 (131)
9 1gyu_A Adapter-related protein 89.1 0.5 1.7E-05 38.2 4.9 44 14-61 29-72 (140)
10 1iu1_A Gamma1-adaptin; coated 87.9 0.65 2.2E-05 37.7 4.9 44 14-61 35-78 (146)
11 1p4u_A ADP-ribosylation factor 77.3 2.6 8.8E-05 34.4 4.4 45 15-61 34-78 (153)
12 1yew_A Particulate methane mon 70.5 12 0.00042 34.8 7.7 69 18-92 252-336 (382)
13 3rfr_A PMOB; membrane, oxidore 66.7 22 0.00074 33.6 8.5 57 35-91 297-367 (419)
14 1wic_A Hypothetical protein ri 61.9 28 0.00096 27.9 7.4 89 35-149 34-124 (152)
15 2k8f_B Cellular tumor antigen 53.0 6.7 0.00023 24.7 1.7 21 131-151 11-31 (39)
16 2kut_A Uncharacterized protein 52.7 42 0.0014 26.2 6.8 62 30-92 9-73 (122)
17 1z9l_A Vesicle-associated memb 52.4 18 0.0006 27.9 4.5 52 35-92 26-78 (128)
18 2xg5_A PAPD, chaperone protein 48.9 33 0.0011 29.1 6.1 46 77-122 58-120 (218)
19 1msp_A MSP, major sperm protei 43.8 23 0.00079 27.4 4.0 51 36-92 25-76 (126)
20 2cri_A Vesicle-associated memb 39.4 29 0.00099 27.5 4.0 52 35-92 30-82 (147)
21 2ys4_A Hydrocephalus-inducing 37.1 31 0.0011 25.9 3.7 52 35-93 40-91 (122)
22 2l14_B Cellular tumor antigen 36.8 9.3 0.00032 25.5 0.5 18 134-151 2-19 (49)
23 2r39_A FIXG-related protein; s 36.6 77 0.0026 23.8 5.9 56 35-94 28-85 (118)
24 4ay0_A Chaperone protein CAF1M 36.0 37 0.0013 28.9 4.3 92 15-120 11-128 (218)
25 2e6j_A Hydin protein; PAPD, st 29.9 50 0.0017 23.9 3.8 53 35-93 25-81 (112)
26 3qbt_B Inositol polyphosphate 29.3 80 0.0027 24.6 5.0 53 35-93 42-101 (140)
27 1g86_A Charcot-leyden crystal 29.2 2E+02 0.0068 22.3 8.0 91 11-125 13-119 (142)
28 2qsv_A Uncharacterized protein 27.8 69 0.0024 26.6 4.7 54 35-94 18-71 (220)
29 3nv1_A Galectin-9, galectin 9 25.7 2.3E+02 0.0079 21.8 8.4 84 13-123 19-117 (138)
30 1x50_A Galectin-4; GAL-BIND le 23.9 2.8E+02 0.0095 22.1 7.7 88 13-125 38-140 (164)
31 3i8t_A Galectin-4; S-type lect 23.1 2.7E+02 0.0093 22.3 7.3 89 13-125 40-143 (164)
32 1is3_A Congerin II; complex wi 22.9 2.6E+02 0.0089 21.4 8.4 90 13-127 12-118 (135)
33 3li6_A Calcium-binding protein 22.8 42 0.0014 21.1 1.9 18 129-146 48-65 (66)
34 1yyc_A LEA protein, putative l 22.1 1.6E+02 0.0056 24.1 5.8 58 35-93 61-120 (174)
35 3zxf_A Galectin-7; sugar bindi 21.7 2.8E+02 0.0094 21.3 8.3 89 13-125 17-119 (138)
36 2rp4_A Transcription factor P5 20.5 1.5E+02 0.0053 21.3 4.6 27 218-247 17-43 (76)
37 2qsv_A Uncharacterized protein 20.0 1.1E+02 0.0038 25.3 4.4 55 35-94 133-187 (220)
No 1
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=100.00 E-value=6e-74 Score=516.47 Aligned_cols=231 Identities=59% Similarity=1.057 Sum_probs=225.9
Q ss_pred CCCCceeeeecCCCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheecccCccccccCCCCCCCccCCCC
Q psy8027 2 YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPS 81 (250)
Q Consensus 2 ~~~p~~~~l~a~~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNkNsFGl~P~~~l~~p~~l~pg 81 (250)
|++|+.+||++++|+||||+|+|.|+ +|+|+|+|+|+|++++||++||||||||+|||+|++++++|.+|+||
T Consensus 28 ~~~p~~~~l~~~~g~GLeI~g~f~r~-------~g~i~l~l~~~N~s~~~is~faIQfNkNsFGL~p~~~~~~~~~L~pg 100 (258)
T 2g30_A 28 YVAPKAVWLPAVKAKGLEISGTFTHR-------QGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPN 100 (258)
T ss_dssp CCCCCEEEECGGGTTTEEEEEEEEEE-------TTEEEEEEEEEECSSSCBCCCEEEECCBTTCCEESSCCCCCSCBCTT
T ss_pred CCCchhhcccccCCCcEEEEEEEEEe-------CCEEEEEEEEecCCccceeeeEEEEcccccCcccCccccCCCccCCC
Confidence 78999999999999999999999999 99999999999999999999999999999999999999998899999
Q ss_pred CeEEEEEeeeecCCCCCCCCCCceEEEeecCCcEEEEEecccceEEeccCCcccHHHHHhhhccCCCCccCccceeeeee
Q psy8027 82 LSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQV 161 (250)
Q Consensus 82 qs~~~~lpl~~~g~~~~~~p~~~LQVAIKnN~dVfYF~~~ipl~vlf~e~G~m~r~~Fl~~WksiP~~nE~~~~~~~~~~ 161 (250)
||++++|||.++|++++++|+++||||||||.|||||++++|++++|.|||+|+|++|+++||+||+++| .
T Consensus 101 qs~~v~lpl~~~~~~~~~~p~~~LQVAIKtn~~vfYF~~~ipl~~l~~e~g~m~~~~F~~~Wk~ip~~nE---------~ 171 (258)
T 2g30_A 101 QSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENE---------L 171 (258)
T ss_dssp CEEEEEEEEESCSCBCCCSSTTEEEEEEECSSCEEEEEEECCGGGGBCSCCCCCHHHHHHHHHHSCGGGC---------E
T ss_pred CcEEEEEeeecCCcccCCCCCchheeeeecCCceEEEEeecCHHHhcCCcCccCHHHHHHHHhhCCCccc---------e
Confidence 9999999999999999999989999999999999999999999999999999999999999999999999 8
Q ss_pred eEEecccccCHHHHHHHHhhCCeEEEeecccCCcceEEEEEEeeCCcEEEEEEeeeCCCCceEEEEeeCCcchhHHHHHH
Q psy8027 162 QFTLTNIALGADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHA 241 (250)
Q Consensus 162 ~~~i~~~~~~~d~i~~kL~~~Nif~VAkr~~~gq~~lY~S~k~~n~i~~L~El~~~~~~~~~~~~lKs~~~~~~pli~~~ 241 (250)
+++++++.+++|++++||+++|||+||||+++||+++|||+||+|++|+|+||++++++++++|++||++++++|+++++
T Consensus 172 ~~~i~~~~~~~~~i~~kL~~~nif~Va~r~~~~q~~ly~S~kt~n~i~vL~el~~~~~~~~v~l~vks~~~~i~~li~~~ 251 (258)
T 2g30_A 172 QFQIKECHLNADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV 251 (258)
T ss_dssp EEEETTCCCCHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEBTTSCEEEEEEEECSSCSSEEEEEEESSGGGHHHHHHH
T ss_pred eEecccCcCCHHHHHHHHHHCCeEEEEeecCCCCceEEEEEEccCCcEEEEEEEEccCCCcEEEEEecCCchHHHHHHHH
Confidence 89999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q psy8027 242 YDAILHA 248 (250)
Q Consensus 242 ~~~il~~ 248 (250)
+++||++
T Consensus 252 ~~~~l~~ 258 (258)
T 2g30_A 252 YDSILKN 258 (258)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 9999975
No 2
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=99.00 E-value=2.9e-08 Score=89.60 Aligned_cols=205 Identities=14% Similarity=0.151 Sum_probs=144.9
Q ss_pred eEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheecccCc---cccccCCCCCCCccCCCCCeEEEEEeeeecC
Q psy8027 18 MEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKNS---FGLTPARPLQVMSPLLPSLSVEASLPMATTG 94 (250)
Q Consensus 18 LeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNkNs---FGl~P~~~l~~p~~l~pgqs~~~~lpl~~~g 94 (250)
|+|-=....+ +....+.|.+.|++..+|++|.+++.... -+|.-.. ...|..|.||+.+...+-+.+..
T Consensus 57 IQIg~kse~~-------~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~-~~~~~tI~p~~q~qq~i~v~~~~ 128 (273)
T 3hs8_A 57 LQIGLKSEFR-------QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQT-KPVDPTVDGGAQVQQVVNIECIS 128 (273)
T ss_dssp EEEEEEEEEE-------TTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEE-CCCCSCBCTTCEEEEEEEEEECS
T ss_pred EEEEEEEEEe-------CceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEe-cCCCCeECCCCEEEEEEEEEEcc
Confidence 4554444555 66788999999999999999999887543 2333211 12356899999988888888887
Q ss_pred CCCCCCCCCceEEEeecCC--cEEEEEecccceEEeccCCcccHHHHHhhhccCC-CCccCccceeeeeeeEEeccc-cc
Q psy8027 95 AVQRMEPLTNLQVAVKNNL--DVFYFACIVPINVYFMEDGEMERKTFLTTWKEIP-TQNEDGNAIFCCQVQFTLTNI-AL 170 (250)
Q Consensus 95 ~~~~~~p~~~LQVAIKnN~--dVfYF~~~ipl~vlf~e~G~m~r~~Fl~~WksiP-~~nE~~~~~~~~~~~~~i~~~-~~ 170 (250)
+... .| .|.+--+.+. .-+.+..++-++-++.+.. |+.++|.+.|+.|. .+.| .+-.+... ..
T Consensus 129 pF~~-~P--~l~isf~~~g~~~~~~LkLPi~~~kf~~p~~-~~~~~F~~rWkql~~~~~E---------~q~v~~~~~~~ 195 (273)
T 3hs8_A 129 DFTE-AP--VLNIQFRYGGTFQNVSVKLPITLNKFFQPTE-MASQDFFQRWKQLSNPQQE---------VQNIFKAKHPM 195 (273)
T ss_dssp CCCC-CC--EEEEEEEETTEEEEEEEECCCCGGGGEEECC-CCHHHHHHHHHHCCSGGGE---------EEEEEECSSCC
T ss_pred cccC-CC--EEEEEEEECCeEEEEEEecceehhheecccc-CCHHHHHHHHHhcCCCCce---------EEEEecCCCCC
Confidence 7643 23 3555555332 3667888887877776644 89999999999999 4556 33333322 35
Q ss_pred CHHHHHHHHhhCCeEEEeecccCCcceEEEEEEee---CCcEEEEEEeeeCCCCceEEEEeeCCcchhHHHHHHHHH
Q psy8027 171 GADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLT---NGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDA 244 (250)
Q Consensus 171 ~~d~i~~kL~~~Nif~VAkr~~~gq~~lY~S~k~~---n~i~~L~El~~~~~~~~~~~~lKs~~~~~~pli~~~~~~ 244 (250)
+.+++.+.+...++-.+ ..-+.+.+.++.+..+. .++-+|+.|........+++++||.+..++..+.+++..
T Consensus 196 ~~~~v~~~l~~lg~~vl-~g~Dpn~~n~v~AGi~~t~~g~~gcLvRle~n~~~~~~rlTVRSt~~~vs~~i~~~i~~ 271 (273)
T 3hs8_A 196 DTEITKAKIIGFGSALL-EEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQRLCELLSE 271 (273)
T ss_dssp CHHHHHHHHHHHTCEEC-TTSSSSTTSEEEEEEEECSSCEEEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCeEEe-CCCCCCcccEEEEEEEEeCCCCEEEEEEEEEcccCCEEEEEEEECChhHHHHHHHHHHh
Confidence 78889999988887544 23233344667676665 567889988876667788999999999999988888764
No 3
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=98.73 E-value=1.1e-06 Score=78.00 Aligned_cols=196 Identities=13% Similarity=0.165 Sum_probs=134.6
Q ss_pred CCeEEEEEEEEeCCCCccchhheecccCc---cccccCCCCCCCccCCCCCeEEEEEeeeecCCCCCCCCCCceEEEeec
Q psy8027 35 IGVIEMELTFTNKSMAPMANFAIQVNKNS---FGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKN 111 (250)
Q Consensus 35 ~g~i~l~l~itN~s~~~~~~faiQfNkNs---FGl~P~~~l~~p~~l~pgqs~~~~lpl~~~g~~~~~~p~~~LQVAIKn 111 (250)
+..-.+.|.+.|++..++++|.+.+.... -+|.-.... .+..|.||+.....+-+.+..+.... | .|.+--+.
T Consensus 41 ~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~-~~~~I~~~~q~qq~i~v~~~~~f~~~-P--~l~isf~~ 116 (247)
T 1kyf_A 41 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKP-VDPTVDGGAQVQQVVNIECISDFTEA-P--VLNIQFRY 116 (247)
T ss_dssp TTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECC-CCSCBCTTCEEEEEEEEEECSCCCCC-C--EEEEEEEE
T ss_pred CCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCC-CCceeCCCcEEEEEEEEEEccccCCC-C--EEEEEEEE
Confidence 45667888999999999999999986522 123221111 34579999999999998888875432 2 36666654
Q ss_pred C--CcEEEEEecccceEEeccCCcccHHHHHhhhccCCCC-ccCccceeeeeeeEEeccc-ccCHHHHHHHHhhCCeEEE
Q psy8027 112 N--LDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQ-NEDGNAIFCCQVQFTLTNI-ALGADAIVSRMKQNNVFTI 187 (250)
Q Consensus 112 N--~dVfYF~~~ipl~vlf~e~G~m~r~~Fl~~WksiP~~-nE~~~~~~~~~~~~~i~~~-~~~~d~i~~kL~~~Nif~V 187 (250)
+ ..-+.+..|+-++.++.+.- |+.++|.+.|+.+... .| .|..++.. .++.+.+..+|...++-.+
T Consensus 117 ~g~~~~~~LkLPi~l~KF~~p~~-~~~~~Ff~rW~~l~~~~~E---------~q~~f~~~~~~~~~~~~~~l~gf~~~vl 186 (247)
T 1kyf_A 117 GGTFQNVSVKLPITLNKFFQPTE-MASQDFFQRWKQLSNPQQE---------VQNIFKAKHPMDTEITKAKIIGFGSALL 186 (247)
T ss_dssp TTEEEEEEEECCCCGGGGEEECC-CCHHHHHHHHTTCCSGGGE---------EEEEEECSSCCCHHHHHHHHHHHTSEEE
T ss_pred CCeeeEEEEecCcEEEEeecCCc-CCHHHHHHHHHhccCCCce---------eEEEeccCCCcCHHHHHHHHhcCCeEEe
Confidence 3 24678888888999986655 9999999999999863 35 34333333 3677888888888875433
Q ss_pred eecccCCcceEEEEEEe--eC-CcEEEEEEeeeCCCCceEEEEeeCCcchhHHHHHHHHHH
Q psy8027 188 AKRNVEGKDMLYQSLRL--TN-GIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDAI 245 (250)
Q Consensus 188 Akr~~~gq~~lY~S~k~--~n-~i~~L~El~~~~~~~~~~~~lKs~~~~~~pli~~~~~~i 245 (250)
..-+.+.+.++-+..+ .. ++-+|+-|........+++.+||.+..++..+.+++...
T Consensus 187 -~~vDpn~~niv~agi~~t~~~~~gcLlRlE~n~~~~~~rltvRss~~~vs~~l~~ll~~~ 246 (247)
T 1kyf_A 187 -EEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQRLCELLSEQ 246 (247)
T ss_dssp -CSSSSSTTSEEEEEEEECSSCEEEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHHTT
T ss_pred -eCCCCCcCcEEEEEEEEcCCCcEEEEEEEEEcCcCCEEEEEEEECChHHHHHHHHHHHhh
Confidence 3322233444444322 22 356887777655566699999999999988888877643
No 4
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=97.29 E-value=0.0011 Score=59.88 Aligned_cols=198 Identities=12% Similarity=0.075 Sum_probs=127.4
Q ss_pred CCeEEEEEEEEeCC-CCccchhheecccCccccccCCCCCCCccCCCCCeEEEEEeeeecC-C--CCCCCCCCceEEEee
Q psy8027 35 IGVIEMELTFTNKS-MAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTG-A--VQRMEPLTNLQVAVK 110 (250)
Q Consensus 35 ~g~i~l~l~itN~s-~~~~~~faiQfNkNsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~~g-~--~~~~~p~~~LQVAIK 110 (250)
.+.|.++..++|.= .+-+.+..+++.. +=|+.....+.++ .|+||++..+-+-+.... . .....-...|..-+|
T Consensus 57 ~~hiVlQF~i~NTL~dq~LenVsV~~~~-~d~~~~~~~ipi~-~L~~~~~g~~yV~l~~~~~~~~~~~~tf~~~LkF~vk 134 (275)
T 1r4x_A 57 TNHMVFQFDCTNTLNDQTLENVTVQMEP-TEAYEVLXYVPAR-SLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVK 134 (275)
T ss_dssp SSEEEEEEEEEECCTTEEEEEEEEEEEE-SSSCEEEEEECEE-EECTTCCEEEEEEEECCSSSTTCCCEEEEEEEEEEEE
T ss_pred CCcEEEEEEeEEccCcEEEeeEEEEEEc-CCCceEEEeeecc-ccCCCCCccEEEEEEcCCCccccccceeEEEEEEEEE
Confidence 57899999999965 4888898888876 2233222223333 688999999998886653 1 111122345777777
Q ss_pred cCCcE-------EEEEecccceEEeccCC----cccHHHHHhhhccCCCCccCccceeeeeeeEEecccccCHHHHHHHH
Q psy8027 111 NNLDV-------FYFACIVPINVYFMEDG----EMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRM 179 (250)
Q Consensus 111 nN~dV-------fYF~~~ipl~vlf~e~G----~m~r~~Fl~~WksiP~~nE~~~~~~~~~~~~~i~~~~~~~d~i~~kL 179 (250)
- +|. ==|.+.++++=+-..-+ ++-..+|...|.++++.+|. .-.|.+++..-=.+++.+-+
T Consensus 135 e-~Dp~tGe~~deGyeDEY~lEdlel~~~D~i~p~~~~nF~~~We~l~~~~E~-------~~tf~L~~~~sl~~AV~~l~ 206 (275)
T 1r4x_A 135 D-CDPTTGETDDEGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVGDEFEK-------EETFTLSTIKTLEEAVGNIV 206 (275)
T ss_dssp E-BCTTTCCBCSCCEEEEEECCCEEECGGGGEEECCCSCHHHHHHHHCSTTCE-------EEEEEETTCCCHHHHHHHHH
T ss_pred e-ccCCCCCcCCCCccceEEccceeechhhEEeecccCchHHHHHhcCCccce-------EEEEEccCcCcHHHHHHHHH
Confidence 4 221 36778888766652222 23456899999999776771 13455543321123444445
Q ss_pred hhCCeEEEeecc----cCCcceEEEEEEeeCCcEEEEEEeeeCC-CCceEEEEeeCCcchhHHHHHHH
Q psy8027 180 KQNNVFTIAKRN----VEGKDMLYQSLRLTNGIWVLNELKIQPG-DPSVTLSLKSRSSDVAQDIFHAY 242 (250)
Q Consensus 180 ~~~Nif~VAkr~----~~gq~~lY~S~k~~n~i~~L~El~~~~~-~~~~~~~lKs~~~~~~pli~~~~ 242 (250)
+--|..-+-+.. ......+++|.++.+|.-+|+-+++--+ +-.+++++||++.++..++..++
T Consensus 207 ~~Lgm~p~e~sd~v~~~~~~HtL~LsG~~~gg~~Vlvr~rl~~~~gv~~kl~vRs~~~~v~~~v~~~v 274 (275)
T 1r4x_A 207 KFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLDTVTMQVTARSLEELPVDIILASV 274 (275)
T ss_dssp HHHTCEECTTTTSCCSSCSEEEEEEEEEETTTEEEEEEEEEEESSSEEEEEEEEESSHHHHHHHHHHC
T ss_pred HhcCCccccCCccCCCCCcceEEEEEEEEeCCcEEEEEEEEecCCceEEEEEEEcCCHHHHHHHHHhh
Confidence 556665554331 1247789999999988778877776543 33458999999999988887664
No 5
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=96.99 E-value=0.0047 Score=56.82 Aligned_cols=199 Identities=12% Similarity=0.079 Sum_probs=127.1
Q ss_pred CCeEEEEEEEEeCC-CCccchhheecccCccccccCCCCCCCccCCCCCeEEEEEeeeecCC---CCCCCCCCceEEEee
Q psy8027 35 IGVIEMELTFTNKS-MAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGA---VQRMEPLTNLQVAVK 110 (250)
Q Consensus 35 ~g~i~l~l~itN~s-~~~~~~faiQfNkNsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~~g~---~~~~~p~~~LQVAIK 110 (250)
.++|.++..++|.= .+-+.+..+++...- ++.....+.++ .|++|++..+-+-+..... ..-..-...|..-+|
T Consensus 104 ~~hiVlQF~~~NTL~dq~LenV~V~~~~~~-~~~~~~~ip~~-~L~~~~~g~~yv~~~~~~~~~~~~~~~f~~~LkF~vk 181 (322)
T 1pzd_A 104 TDHMVFQFDCTNTLNDQTLENVTVQMEPSE-AYEVLCYVPAR-SLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVK 181 (322)
T ss_dssp SSEEEEEEEEEECCTTEEEEEEEEEEEESS-SCEEEEEECEE-EECBTCCEEEEEEEECCSSCTTCCCEEEEEEEEEEEE
T ss_pred cCcEEEEEEEEEccCceEEeeEEEEEecCC-CceEEEEEEHh-HCCCCCCeeEEEEEEecCCCCCccceEEEEEEEEEEE
Confidence 57899999999965 488888888887632 23332223344 6889999999988866531 111122345777777
Q ss_pred cC---C---cEEEEEecccceEEeccCC----cccHHHHHhhhccCCCCccCccceeeeeeeEEecccccCHHHHHHHHh
Q psy8027 111 NN---L---DVFYFACIVPINVYFMEDG----EMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMK 180 (250)
Q Consensus 111 nN---~---dVfYF~~~ipl~vlf~e~G----~m~r~~Fl~~WksiP~~nE~~~~~~~~~~~~~i~~~~~~~d~i~~kL~ 180 (250)
-. . +===|.+.++++=+-..-+ ++-..+|...|.++++.+|. .-.|.+++..-=.+++.+-++
T Consensus 182 e~Dp~TGe~~deGyeDEY~lEdlel~~~D~i~p~~~~nF~~~We~l~~~~E~-------~~tf~L~~~~sL~~AV~~l~~ 254 (322)
T 1pzd_A 182 DCDPTTGEADDEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDEFQK-------EETFTLSTIKTLEEAVGNIVK 254 (322)
T ss_dssp EBCTTTCCBCSCCEEEEEECCCEEECGGGGEEECCCSCHHHHHHHHCSTTCE-------EEEEEESSCCCHHHHHHHHHH
T ss_pred eecCCCCCcCCCCccceEEccceeechhhEeeecccCchHHHHHhcCCccce-------EEEEEccCcCcHHHHHHHHHH
Confidence 41 1 0024788888766652222 23456899999999876771 134455433211234444445
Q ss_pred hCCeEEEeecc-c---CCcceEEEEEEeeCCcEEEEEEeeeCC-CCceEEEEeeCCcchhHHHHHHH
Q psy8027 181 QNNVFTIAKRN-V---EGKDMLYQSLRLTNGIWVLNELKIQPG-DPSVTLSLKSRSSDVAQDIFHAY 242 (250)
Q Consensus 181 ~~Nif~VAkr~-~---~gq~~lY~S~k~~n~i~~L~El~~~~~-~~~~~~~lKs~~~~~~pli~~~~ 242 (250)
--|..-+-+.. + .....+++|.++.+|.-+|+-+++--+ +-.+++++|+++.++..++..++
T Consensus 255 ~Lgm~p~e~sd~v~~~~~sHtL~LsG~~~gg~~VLvr~rl~~~~gv~~kl~vRS~~~~v~~~v~~~v 321 (322)
T 1pzd_A 255 FLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLDTVTMQVTARSSEELPVDIVLASV 321 (322)
T ss_dssp HHTCEECTTTTCCCSSCSEEEEEEEEEETTSCEEEEEEEEEESSSEEEEEEEEESSHHHHHHHHHHC
T ss_pred hcCCccccCCCcCCCCCcceEEEEEEEEeCCcEEEEEEEEeeCCceEEEEEEecCCHHHHHHHHHhh
Confidence 55665554331 1 247889999999999778877776543 33458999999999988887653
No 6
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=91.53 E-value=0.22 Score=39.34 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=43.7
Q ss_pred CCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheecccC-ccccccCCCCCCCccCCCC
Q psy8027 14 KGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKN-SFGLTPARPLQVMSPLLPS 81 (250)
Q Consensus 14 ~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNkN-sFGl~P~~~l~~p~~l~pg 81 (250)
...||.|.-.|.|.. .+.+.+.++++|.+..++++|.+|.-.= ++-|.... .. ...|+|+
T Consensus 15 ~~~~l~I~~~~~~~~------~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p-~S-g~~L~p~ 75 (123)
T 3mnm_A 15 QSPNLKIEFEISRES------NSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQP-QS-SNFMIGN 75 (123)
T ss_dssp ECSSEEEEEEEEECS------SSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECC-CS-CSCBCTT
T ss_pred eCCCEEEEEEEEeCC------CCeEEEEEEEecCCCCccccEEEEEecCcccEEEeEC-CC-cCccCCC
Confidence 467999999999973 4679999999999999999999998652 33333221 11 1257776
No 7
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=89.74 E-value=0.36 Score=37.99 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=36.0
Q ss_pred CCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheeccc
Q psy8027 14 KGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61 (250)
Q Consensus 14 ~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNk 61 (250)
...||.|.-.|.|.. +..+.+.+.++++|++..++++|.+|.-.
T Consensus 11 ~~~~l~I~~~~~~~~----~~~~~~~i~~~~~N~s~~~it~f~fqaAV 54 (122)
T 3zy7_A 11 DALGLKIEFTFERSN----TNPSVTVITIQASNSTELDMTDFVFQAAV 54 (122)
T ss_dssp EETTEEEEEEEECC--------CEEEEEEEEEECSSSCBEEEEEEEEC
T ss_pred eCCCEEEEEEEEcCC----CCCCeEEEEEEEEECCCCccccEEEEEEc
Confidence 467999999999861 11367999999999999999999999865
No 8
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.46 E-value=0.45 Score=37.86 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=36.8
Q ss_pred CCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheeccc
Q psy8027 14 KGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61 (250)
Q Consensus 14 ~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNk 61 (250)
...||.|.-.+.|.+ ...+.+.+.++++|.+..++++|.+|.-.
T Consensus 20 ~~~~l~I~f~~~~~~----~~~~~~~i~~~~~N~s~~~it~f~fQaAV 63 (131)
T 2e9g_A 20 EREGVQLNLSFIRPP----ENPALLLITITATNFSEGDVTHFICQAAV 63 (131)
T ss_dssp ECSSEEEEEEEECCS----SCTTEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred ecCCEEEEEEEEcCC----CCCCeEEEEEEEEECCCCccccEEEEEEc
Confidence 457899999999851 12578999999999999999999999764
No 9
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=89.07 E-value=0.5 Score=38.18 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=36.9
Q ss_pred CCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheeccc
Q psy8027 14 KGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61 (250)
Q Consensus 14 ~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNk 61 (250)
...||.|.-.+.|.+ +..+.+.+.++++|.+..++++|.+|.-.
T Consensus 29 ~~n~L~I~f~~~r~~----~~~~~~~i~~~f~N~s~~~it~f~fQaAV 72 (140)
T 1gyu_A 29 SKNGLKIEFTFERSN----TNPSVTVITIQASNSTELDMTDFVFQAAV 72 (140)
T ss_dssp EETTEEEEEEEEECS----SCTTEEEEEEEEEECSSSCBEEEEEEEEC
T ss_pred ecCCEEEEEEEEcCC----CCCCEEEEEEEEEECCCCccccEEEEEEc
Confidence 456899999999852 12578999999999999999999999765
No 10
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=87.90 E-value=0.65 Score=37.70 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=36.7
Q ss_pred CCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheeccc
Q psy8027 14 KGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61 (250)
Q Consensus 14 ~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNk 61 (250)
...||.|.-.+.|.+ +..+.+.+.++++|.+..++++|.+|.-.
T Consensus 35 ~~~~l~I~f~~~r~~----~~~~~~~i~~~f~N~s~~~it~f~fQaAV 78 (146)
T 1iu1_A 35 SKNGLKIEFTFERSN----TNPSVTVITIQASNSTELDMTDFVFQAAV 78 (146)
T ss_dssp EETTEEEEEEEEECS----SCTTEEEEEEEEEECSSSCBEEEEEEEEC
T ss_pred ecCCEEEEEEEEcCC----CCCCEEEEEEEEEeCCCCccccEEEEEEc
Confidence 456999999999852 12578999999999999999999999765
No 11
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=77.28 E-value=2.6 Score=34.43 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=34.7
Q ss_pred CcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheeccc
Q psy8027 15 GKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61 (250)
Q Consensus 15 ~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNk 61 (250)
..||.|.-.|.|...|.. .+...+.++++|.+.+++++|.+|.-.
T Consensus 34 ~n~l~I~f~~~~~~~p~~--~~~~~i~~~~~N~s~~~is~f~fQaAV 78 (153)
T 1p4u_A 34 KNGFRILFHFAKECPPGR--PDVLVVVVSMLNMAPLPVKSIVLQAAA 78 (153)
T ss_dssp ETTEEEEEEEBSSCCTTC--TTEEEEEEEEEECSSSCBEEEEEEEEC
T ss_pred cCCEEEEEEEEecCCCCC--CCeEEEEEEEEeCCCCccccEEEEEEc
Confidence 468999999988411111 245678999999999999999999765
No 12
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=70.47 E-value=12 Score=34.84 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=43.4
Q ss_pred eEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccch--hh---eec-ccCccccccCCC--------CC--CCccCCCC
Q psy8027 18 MEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMAN--FA---IQV-NKNSFGLTPARP--------LQ--VMSPLLPS 81 (250)
Q Consensus 18 LeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~--fa---iQf-NkNsFGl~P~~~--------l~--~p~~l~pg 81 (250)
.++..+--|.+ +..+.|.|++||++..|+.- |. +.| |+.-+-..++.| +. -++||+||
T Consensus 252 ~~v~~A~Y~vp------gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PG 325 (382)
T 1yew_A 252 VKVEDATYRVP------GRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPG 325 (382)
T ss_dssp EEEEEEEEESS------CSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTT
T ss_pred EEeeccEEecC------CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCC
Confidence 44444444543 88899999999999887643 32 222 544433333332 22 24589999
Q ss_pred CeEEEEEeeee
Q psy8027 82 LSVEASLPMAT 92 (250)
Q Consensus 82 qs~~~~lpl~~ 92 (250)
||.++++....
T Consensus 326 ETr~~~v~a~d 336 (382)
T 1yew_A 326 ETRTVDVTASD 336 (382)
T ss_dssp CEEEEEEEEEC
T ss_pred ceeEEEEEeeh
Confidence 99999987643
No 13
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=66.73 E-value=22 Score=33.58 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=36.1
Q ss_pred CCeEEEEEEEEeCCCCccchhhee------cccCccccccCCC--------CCCCccCCCCCeEEEEEeee
Q psy8027 35 IGVIEMELTFTNKSMAPMANFAIQ------VNKNSFGLTPARP--------LQVMSPLLPSLSVEASLPMA 91 (250)
Q Consensus 35 ~g~i~l~l~itN~s~~~~~~faiQ------fNkNsFGl~P~~~--------l~~p~~l~pgqs~~~~lpl~ 91 (250)
+..+.|.|++||++..|+.-=-.+ +|+.-+=..+..+ +.-|.||+||||.++++-+.
T Consensus 297 gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~pI~PGETrt~~V~a~ 367 (419)
T 3rfr_A 297 GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIVVKIQ 367 (419)
T ss_dssp SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCCCBCTTCEEEEEEEEE
T ss_pred CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCCCcCCCcceEEEEEee
Confidence 889999999999998886432222 2443322221100 11223799999999998764
No 14
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=61.85 E-value=28 Score=27.90 Aligned_cols=89 Identities=18% Similarity=0.265 Sum_probs=55.7
Q ss_pred CCeEEEEEEEEeCCCCccchhheec-ccCccccccCCCCCCCccCCCCCeEEEEEeeeecCCCCCCCCCCceEEEeecCC
Q psy8027 35 IGVIEMELTFTNKSMAPMANFAIQV-NKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNL 113 (250)
Q Consensus 35 ~g~i~l~l~itN~s~~~~~~faiQf-NkNsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~~g~~~~~~p~~~LQVAIKnN~ 113 (250)
++++.-.|+|+|.+..++ -|.|+- |.+.|-+-|.. .-|.||+++++.|-|...- + + +. -
T Consensus 34 ~~~~~~~l~L~N~s~~~V-aFKVKTT~p~~y~VrP~~-----GiI~P~~s~~V~V~lq~~~-----~-------~-~~-k 93 (152)
T 1wic_A 34 SGEKKTLIVLTNVTKNIV-AFKVRTTAPEKYRVKPSN-----SSCDPGASIDIIVSPHGGL-----T-------V-SA-Q 93 (152)
T ss_dssp SSCCCEEEEEEBCSSSCE-EEEEEESCTTTEEEESSE-----EEECTTCEEEEEEEECSSS-----C-------C-CS-S
T ss_pred CceEEEEEEEEcCCCCeE-EEEEECCCCCceeecCCC-----cEECCCCeEEEEEEecCcc-----c-------C-CC-C
Confidence 456778999999998664 466665 34578887754 3588999999999874321 0 1 22 2
Q ss_pred cEEEEEecccceEEecc-CCcccHHHHHhhhccCCCC
Q psy8027 114 DVFYFACIVPINVYFME-DGEMERKTFLTTWKEIPTQ 149 (250)
Q Consensus 114 dVfYF~~~ipl~vlf~e-~G~m~r~~Fl~~WksiP~~ 149 (250)
|-|.. +.+..+ ++..+-+++.++|+..+.+
T Consensus 94 DKFlV------qs~~v~~~~~~~~~d~~~~wk~~~~~ 124 (152)
T 1wic_A 94 DRFLI------MAAEMEQSSGTGPAELSQFWKEVPRN 124 (152)
T ss_dssp CCEEE------EEEECCSSCCCSHHHHHHHHHHSCTT
T ss_pred CEEEE------EEEEcCCcCCCChhhHHHHHhccCCC
Confidence 22211 122222 2455677888999997543
No 15
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=53.01 E-value=6.7 Score=24.75 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=18.0
Q ss_pred CCcccHHHHHhhhccCCCCcc
Q psy8027 131 DGEMERKTFLTTWKEIPTQNE 151 (250)
Q Consensus 131 ~G~m~r~~Fl~~WksiP~~nE 151 (250)
+-+++++.|-.+||-+|+.+-
T Consensus 11 epPLSQETFsdLW~LLP~~~i 31 (39)
T 2k8f_B 11 EPPLSQETFSDLWKLLPENNV 31 (39)
T ss_dssp CCCCSCHHHHHHHHTCSSSCC
T ss_pred CCCccHHHHHHHHHhCCcccc
Confidence 456789999999999998765
No 16
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=52.72 E-value=42 Score=26.23 Aligned_cols=62 Identities=16% Similarity=0.030 Sum_probs=42.5
Q ss_pred CCCCC-CCeEEEEEEEEeCCCCccchhheecccCc--cccccCCCCCCCccCCCCCeEEEEEeeee
Q psy8027 30 PATPG-IGVIEMELTFTNKSMAPMANFAIQVNKNS--FGLTPARPLQVMSPLLPSLSVEASLPMAT 92 (250)
Q Consensus 30 ~~~~~-~g~i~l~l~itN~s~~~~~~faiQfNkNs--FGl~P~~~l~~p~~l~pgqs~~~~lpl~~ 92 (250)
|+.|- ++.+.+..++.|....+-..|.+.|.-+. =|-...+-..++ .|.+|+|..++++...
T Consensus 9 P~~p~~g~~vTvsatVkN~Gt~~s~a~~V~~yl~~p~~gg~~vgt~tv~-~LaaG~s~t~~v~~~~ 73 (122)
T 2kut_A 9 KETPFEGEEITVSARVTNRGAAEAHNVPVAVYLGNPAQGGVEIGRDTIS-RIPVGGTGLARVQWKA 73 (122)
T ss_dssp TTSCCTTCEEEEEEEEECCSSSCBCCCCEEECSSCTTTCCCCCBCCCCS-CBCTTCEEECCEEEEC
T ss_pred CCCCCCCCeEEEEEEEEeCCCcccCcEEEEEEeCCCccCCeEEeeEEcc-ccCCCCeEEEEEEEec
Confidence 44443 57788999999998887778888887765 121222223355 8999999997676543
No 17
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=52.40 E-value=18 Score=27.92 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=39.9
Q ss_pred CCeEEEEEEEEeCCCCccchhheeccc-CccccccCCCCCCCccCCCCCeEEEEEeeee
Q psy8027 35 IGVIEMELTFTNKSMAPMANFAIQVNK-NSFGLTPARPLQVMSPLLPSLSVEASLPMAT 92 (250)
Q Consensus 35 ~g~i~l~l~itN~s~~~~~~faiQfNk-NsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~ 92 (250)
+.+..-.|+|+|.+..++ -|.|+-+. +.|.+.|.. .-|.||+++++.|-+..
T Consensus 26 ~~~~~~~l~L~N~s~~~v-aFKVKTT~p~~y~VrP~~-----G~i~P~~s~~v~V~~~~ 78 (128)
T 1z9l_A 26 TDVVTTNLKLQNPSDRKV-CFKVKTTAPRRYCVRPNS-----GVIDPGSIVTVSVMLQP 78 (128)
T ss_dssp SSCEEEEEEEECCSSSCE-EEEEEESCGGGEEEESCE-----EEECTTCEEEEEEEECC
T ss_pred CceEEEEEEEECCCCCeE-EEEEECCCCCceEEeCCC-----cEECCCCeEEEEEEECc
Confidence 456888999999998775 57777554 478888854 36899999999998753
No 18
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=48.90 E-value=33 Score=29.12 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=29.7
Q ss_pred cCCCCCeEEEEEeeee---cCCCCC-------------C-CCCCceEEEeecCCcEEEEEecc
Q psy8027 77 PLLPSLSVEASLPMAT---TGAVQR-------------M-EPLTNLQVAVKNNLDVFYFACIV 122 (250)
Q Consensus 77 ~l~pgqs~~~~lpl~~---~g~~~~-------------~-~p~~~LQVAIKnN~dVfYF~~~i 122 (250)
.|.||++..+.|-... .-+.++ . +..+.||+|+++.+.+||==..+
T Consensus 58 rl~p~~~q~lRI~~~~~~~~lP~DrESlf~lnv~eIPp~~~~~n~lqia~r~rIKlFyRP~~l 120 (218)
T 2xg5_A 58 RLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAI 120 (218)
T ss_dssp EECTTCEEEEEEEECGGGGGSCSSSCEEEEEEEEEECCCCCCTTEEEEEEEEEEEEEEECGGG
T ss_pred EECCCCceEEEEEecCCCCCCCCCceEEEEEEeecCCCCCCCCceEEEEehheeeEEEcCccc
Confidence 6889998877774332 111111 1 11367999999999999976654
No 19
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=43.80 E-value=23 Score=27.41 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=39.2
Q ss_pred CeEEEEEEEEeCCCCccchhheecc-cCccccccCCCCCCCccCCCCCeEEEEEeeee
Q psy8027 36 GVIEMELTFTNKSMAPMANFAIQVN-KNSFGLTPARPLQVMSPLLPSLSVEASLPMAT 92 (250)
Q Consensus 36 g~i~l~l~itN~s~~~~~~faiQfN-kNsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~ 92 (250)
.+..-.|+++|.+..++ .|.|+-+ ...|.+-|.. .-|.||+++++.|-|..
T Consensus 25 ~~~~~~l~l~N~s~~~v-aFKVKTT~p~~y~VrP~~-----Gii~P~~s~~v~V~~q~ 76 (126)
T 1msp_A 25 DKHTYHIKITNAGGRRI-GWAIKTTNMRRLSVDPPC-----GVLDPKEKVLMAVSCDT 76 (126)
T ss_dssp SCCCEEEEEEECSSSCE-EEEEEESCTTTEEEESCE-----EEECTTCEEEEEEEECC
T ss_pred cceEEEEEEECCCCCeE-EEEEEcCCCCcEEEECCC-----eEECCCCEEEEEEEecC
Confidence 34677899999998776 6788864 4588888854 35889999999987643
No 20
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.42 E-value=29 Score=27.49 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=39.6
Q ss_pred CCeEEEEEEEEeCCCCccchhheecc-cCccccccCCCCCCCccCCCCCeEEEEEeeee
Q psy8027 35 IGVIEMELTFTNKSMAPMANFAIQVN-KNSFGLTPARPLQVMSPLLPSLSVEASLPMAT 92 (250)
Q Consensus 35 ~g~i~l~l~itN~s~~~~~~faiQfN-kNsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~ 92 (250)
+.++.-.|+|+|.+..++ -|.|+-+ .+.|.+-|.. .-|.||+++++.|-+..
T Consensus 30 ~~~~~~~l~L~N~s~~~V-aFKVKTT~p~~y~VrP~~-----GiI~P~~s~~v~V~l~~ 82 (147)
T 2cri_A 30 TDVVTTNLKLQNPSDRKV-CFKVKTTAPRRYCVRPNS-----GIIDPGSIVTVSVMLQP 82 (147)
T ss_dssp SSCCCEEEEEECCSSSCE-EEEEEESCTTSEEEESSE-----EECCTTCEEEEEEEECC
T ss_pred CceEEEEEEEECCCCCcE-EEEEECCCCccEEEcCCC-----cEECCCCeEEEEEEECC
Confidence 456778899999998775 5677655 4578888754 35899999999998753
No 21
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.11 E-value=31 Score=25.94 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=38.5
Q ss_pred CCeEEEEEEEEeCCCCccchhheecccCccccccCCCCCCCccCCCCCeEEEEEeeeec
Q psy8027 35 IGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATT 93 (250)
Q Consensus 35 ~g~i~l~l~itN~s~~~~~~faiQfNkNsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~~ 93 (250)
++.-...+.+.|.+..+.. |.+... ..|-+.|.. ..|.||++..+.+--.+.
T Consensus 40 ~~~~~~~~~l~N~g~~~~~-f~~~~~-~~F~i~P~~-----g~L~pg~~~~i~V~F~P~ 91 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAV-FHIKTC-RPFSIEPAI-----GTLNVGESMQLEVEFEPQ 91 (122)
T ss_dssp SSCEEEEEEEECCSSSCEE-EEEECC-TTEEEESSE-----EEECTTCEEEEEEEECCS
T ss_pred CCeEEEEEEEEECCCCCEE-EEEecC-CCeEEECCc-----CEECCCCEEEEEEEEEcC
Confidence 6778889999998876643 666664 489988865 368899988777765443
No 22
>2l14_B Cellular tumor antigen P53; CBP, TAD, protein binding; NMR {Homo sapiens}
Probab=36.80 E-value=9.3 Score=25.55 Aligned_cols=18 Identities=33% Similarity=0.728 Sum_probs=15.7
Q ss_pred ccHHHHHhhhccCCCCcc
Q psy8027 134 MERKTFLTTWKEIPTQNE 151 (250)
Q Consensus 134 m~r~~Fl~~WksiP~~nE 151 (250)
++++.|-.+||.+|+.|-
T Consensus 2 LSQETFSdLWkLLP~nnv 19 (49)
T 2l14_B 2 LSQETFSDLWKLLPENNV 19 (49)
T ss_dssp CCTTSHHHHHHHSSTTCC
T ss_pred ccHHHHHHHHHhCCcccc
Confidence 578999999999998764
No 23
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=36.63 E-value=77 Score=23.77 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=36.3
Q ss_pred CCeE--EEEEEEEeCCCCccchhheecccCccccccCCCCCCCccCCCCCeEEEEEeeeecC
Q psy8027 35 IGVI--EMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTG 94 (250)
Q Consensus 35 ~g~i--~l~l~itN~s~~~~~~faiQfNkNsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~~g 94 (250)
+|.| .+.++|.|+++++ ..|.|.+.-- =|+.-.++. +..|.||++.+..+-+....
T Consensus 28 dG~I~N~Ytlki~Nkt~~~-~~~~l~v~g~-~~l~~~g~~--~i~v~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 28 AGEVENTYTLKVINKTQQV-QEYNLDVKGL-NDVSWYGKQ--TIQVEPGEVLNLPMSLGADP 85 (118)
T ss_dssp CCSEEEEEEEEEEECSSSC-EEEEEEEESC-SSCEEESCC--EEEECTTCEEEEEEEEEECG
T ss_pred CCeEEEEEEEEEEECCCCC-EEEEEEEeCC-cccEEeCCC--cEEECCCCEEEEEEEEEECh
Confidence 6767 5999999999999 5577776410 112211111 24688999888777776554
No 24
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=36.01 E-value=37 Score=28.92 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=45.7
Q ss_pred CcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhhee--c---c-----cCccccccCCCCCCCccCCCCCeE
Q psy8027 15 GKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQ--V---N-----KNSFGLTPARPLQVMSPLLPSLSV 84 (250)
Q Consensus 15 ~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQ--f---N-----kNsFGl~P~~~l~~p~~l~pgqs~ 84 (250)
.-|+.|.||=+--+ +++-...++++|.+..|. .+| + + +.+|=++| |+ .-|.||+..
T Consensus 11 ~agv~l~~TRvIy~------~~~k~~sl~l~N~~~~p~---LvQswv~~~~~~~~~~~pFivtP--Pl---~Rl~p~~~q 76 (218)
T 4ay0_A 11 EYGVTIGESRIIYP------LDAAGVMVSVKNTQDYPV---LIQSRIYDENKEKESEDPFVVTP--PL---FRLDAKQQN 76 (218)
T ss_dssp --CEEESCCEEEEE------TTCSCEEEEEECCSSSCE---EEEEEEECTTSCCCSSCSEEEES--SE---EEECTTCEE
T ss_pred eeeEEECceEEEEC------CCCcEEEEEEEcCCCCCE---EEEEEEecCCCCccccCCEEECC--Ce---EEeCCCCce
Confidence 44899988854432 566678899999887662 333 1 1 12343333 11 257899987
Q ss_pred EEEEeeeecC-CCCC-------------C--CCCCceEEEeecCCcEEEEEe
Q psy8027 85 EASLPMATTG-AVQR-------------M--EPLTNLQVAVKNNLDVFYFAC 120 (250)
Q Consensus 85 ~~~lpl~~~g-~~~~-------------~--~p~~~LQVAIKnN~dVfYF~~ 120 (250)
.+.|-..... +.++ . +..+.||+|+++.+.+||==.
T Consensus 77 ~lRI~~~~~~LP~DRESlf~lnv~eIPp~~~~~~n~lqia~r~rIKlFyRP~ 128 (218)
T 4ay0_A 77 SLRIAQAGGVFPRDKESLKWLCVKGIPPKDEDIWVDVQFAINNCIKLLVRPN 128 (218)
T ss_dssp EEEEEECSCCCCSSSCEEEEEEEEEECC--------------CEEEEEEECT
T ss_pred EEEEEecCCCCCcCcEEEEEEEEEecCCCCccccceeEEEEEEEEEEEEcCc
Confidence 7776332111 1111 1 122459999999999999543
No 25
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.94 E-value=50 Score=23.91 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=34.5
Q ss_pred CCeEEEEEEEEeCCCCccchhheecccCc----cccccCCCCCCCccCCCCCeEEEEEeeeec
Q psy8027 35 IGVIEMELTFTNKSMAPMANFAIQVNKNS----FGLTPARPLQVMSPLLPSLSVEASLPMATT 93 (250)
Q Consensus 35 ~g~i~l~l~itN~s~~~~~~faiQfNkNs----FGl~P~~~l~~p~~l~pgqs~~~~lpl~~~ 93 (250)
+.....+++|+|.+..|+.-- +.-...+ |-+.|.. .+|.||++.++.+-..+.
T Consensus 25 g~~~~~~~~l~N~g~~p~~~~-~~~~~~~~~~~f~v~p~~-----g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 25 GSAHCYEAILYNKGSIDALFN-MTPPTSALGACFVFSPKE-----GIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp SCCEEEEEEEEECCSSCEEEE-ECCCSSHHHHHCEEESSE-----EEECTTBCCEEEEEECCC
T ss_pred CCEEEEEEEEEECCcceEEEE-EecCCccccCcEEEECCc-----CEECCCCEEEEEEEEECC
Confidence 456778999999999875422 2112233 4444432 479999998888876554
No 26
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=29.29 E-value=80 Score=24.65 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=35.4
Q ss_pred CCeEEEEEEEEeCCCCccchhheec-------ccCccccccCCCCCCCccCCCCCeEEEEEeeeec
Q psy8027 35 IGVIEMELTFTNKSMAPMANFAIQV-------NKNSFGLTPARPLQVMSPLLPSLSVEASLPMATT 93 (250)
Q Consensus 35 ~g~i~l~l~itN~s~~~~~~faiQf-------NkNsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~~ 93 (250)
+....-.++|+|.+..|.+ |.+.- .+--|-+.|.. ..|+||+++++.|-+..+
T Consensus 42 ~~~~~~~l~I~Ntg~vpa~-F~f~~~~~~~~~~~~wl~v~P~~-----G~L~Pge~~~I~v~~~v~ 101 (140)
T 3qbt_B 42 RQLQKEKFQISNNGQVPCH-FSFIPKLNDSQYCKPWLRAEPFE-----GYLEPNETVDISLDVYVS 101 (140)
T ss_dssp TCCEEEEEEEEECSSSCEE-EEEECCTTCSSSSCTTEEEESCE-----EEECTTCEEEEEEEECBC
T ss_pred eeeeeeEEEEEcCCccceE-EEEecCCCchhhhhHhhhcCCcc-----cccCCCCeeEEEEEEEEc
Confidence 4456779999999998865 33332 11224444432 479999999999988654
No 27
>1g86_A Charcot-leyden crystal protein; beta barrel, hydrolase; 1.80A {Homo sapiens} SCOP: b.29.1.3 PDB: 1lcl_A 1qkq_A* 1hdk_A*
Probab=29.21 E-value=2e+02 Score=22.26 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=52.7
Q ss_pred ecCCCcceEEEEEEec---CCCCCCCCCCeEEEEEEEEeCCCCccchhheecccC--------cc-----ccccCCCCCC
Q psy8027 11 PAEKGKGMEIWGTFSR---KPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKN--------SF-----GLTPARPLQV 74 (250)
Q Consensus 11 ~a~~~~GLeI~g~f~r---~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNkN--------sF-----Gl~P~~~l~~ 74 (250)
+-.-|+-+.|.|.... . ..+..+++..... +-++.|+.||.. |+ | +..-- -
T Consensus 13 gl~~G~~i~I~G~v~~~~~~-------~~rF~Inf~~~~~---~~~dialHfnprf~~~IV~Ns~~~g~Wg--~EEr~-~ 79 (142)
T 1g86_A 13 SLSTGSTVTIKGRPLVCFLN-------EPYLQVDFHTEMK---EESDIVFHFQVCFGRRVVMNSREYGAWK--QQVES-K 79 (142)
T ss_dssp CCCTTCEEEEEEEESSCGGG-------CCEEEEEEESSSS---TTSCEEEEEEEETTTEEEEEEEETTEEC--CCEEE-C
T ss_pred CCCCCCEEEEEEEECCccCC-------CCeEEEEeeeCCC---CCCCEEEEEEEcCCCEEEEeCCcCCEee--ccEEe-C
Confidence 4467888999999854 3 3565555543211 234677777752 22 1 11100 1
Q ss_pred CccCCCCCeEEEEEeeeecCCCCCCCCCCceEEEeecCCcEEEEEecccce
Q psy8027 75 MSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPIN 125 (250)
Q Consensus 75 p~~l~pgqs~~~~lpl~~~g~~~~~~p~~~LQVAIKnN~dVfYF~~~ipl~ 125 (250)
+-|+.+|+..+..+-+..+ -.+|+| |+.-++.|...+|++
T Consensus 80 ~~PF~~G~~F~l~I~~~~~----------~f~V~V-ng~~~~~F~hR~~~~ 119 (142)
T 1g86_A 80 NMPFQDGQEFELSISVLPD----------KYQVMV-NGQSSYTFDHRIKPE 119 (142)
T ss_dssp CCCCCTTCCEEEEEEECSS----------EEEEEE-TTEEEEEEECSSCGG
T ss_pred CCCccCCCcEEEEEEeCCC----------EEEEEE-CCcEEEEecCCCChh
Confidence 2267888887777754222 267777 335588888888753
No 28
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=27.80 E-value=69 Score=26.63 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=36.4
Q ss_pred CCeEEEEEEEEeCCCCccchhheecccCccccccCCCCCCCccCCCCCeEEEEEeeeecC
Q psy8027 35 IGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTG 94 (250)
Q Consensus 35 ~g~i~l~l~itN~s~~~~~~faiQfNkNsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~~g 94 (250)
+......++++|.+..|+.-=.+.+ . +| +.. -..|.+|+||++.+..+-+++..
T Consensus 18 g~~~~~~~~i~N~g~~pl~i~~~~~-p-~~-~~~---~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 18 EDEGVVRLVVNNTDESDLQVAVVSL-P-SF-VSL---DDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp TCCCEEEEEEEECSSSCEEEEEEEC-C-TT-EEC---SCCEEEECSSSCEEEEEEECCCT
T ss_pred CCcceEEEEEEeCCCCceEEEeccC-C-Cc-eEe---eeCcceeCCCCceEEEEEEcchh
Confidence 5667789999999999987655543 1 11 111 12367899999888777765554
No 29
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*
Probab=25.68 E-value=2.3e+02 Score=21.81 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=53.0
Q ss_pred CCCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheeccc---------C-----ccccccCCCCC-CCcc
Q psy8027 13 EKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK---------N-----SFGLTPARPLQ-VMSP 77 (250)
Q Consensus 13 ~~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNk---------N-----sFGl~P~~~l~-~p~~ 77 (250)
.-|+-+.|.|..... .++..++|.- .+ +.|+.||. | .+| ...-.. -.-|
T Consensus 19 ~~G~~i~I~G~v~~~-------~~~F~Inl~~--~~-----dialHfnpRf~~~~vV~Ns~~~g~Wg--~Eer~~~~~~P 82 (138)
T 3nv1_A 19 YPSKSILLSGTVLPS-------AQRFHINLCS--GN-----HIAFHLNPRFDENAVVRNTQIDNSWG--SEERSLPRKMP 82 (138)
T ss_dssp CTTCEEEEEEEECTT-------CCBEEEEEEE--TT-----EEEEEEEEETTTTEEEEEEEETTEEC--CCBCCCSSSCC
T ss_pred CCCCEEEEEEEECCC-------CCEEEEEcCc--CC-----CEEEEEEEecCCCEEEEeeeeCCeec--CCEeecCCCCC
Confidence 457789999999666 6676666642 22 67777765 2 333 222110 1236
Q ss_pred CCCCCeEEEEEeeeecCCCCCCCCCCceEEEeecCCcEEEEEeccc
Q psy8027 78 LLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVP 123 (250)
Q Consensus 78 l~pgqs~~~~lpl~~~g~~~~~~p~~~LQVAIKnN~dVfYF~~~ip 123 (250)
..+|+..+..+-+..+ ..+|+| |+.-.+.|...+|
T Consensus 83 F~~G~~F~l~I~~~~~----------~f~V~v-ng~~~~~f~hR~~ 117 (138)
T 3nv1_A 83 FVRGQSFSVWILCEAH----------CLKVAV-DGQHLFEYYHRLR 117 (138)
T ss_dssp CCTTCEEEEEEEECSS----------EEEEEE-TTEEEEEEECSSC
T ss_pred ccCCCeEEEEEEEccc----------eEEEEE-CCcEEEEecCCCC
Confidence 8899988888865322 278888 4556788888876
No 30
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.85 E-value=2.8e+02 Score=22.14 Aligned_cols=88 Identities=16% Similarity=0.252 Sum_probs=53.6
Q ss_pred CCCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheecccC---------c-----cccccCCCCCCCccC
Q psy8027 13 EKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKN---------S-----FGLTPARPLQVMSPL 78 (250)
Q Consensus 13 ~~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNkN---------s-----FGl~P~~~l~~p~~l 78 (250)
.-|+=+.|.|..... .++..++|.-.+. .+.|+-||.. + +| ...--...-|+
T Consensus 38 ~~G~~i~I~G~v~~~-------~~rF~INl~~g~~-----~dIalHfnpRf~~~~IV~Ns~~~g~Wg--~EEr~~~~~PF 103 (164)
T 1x50_A 38 TARRTIIIKGYVPPT-------GKSFAINFKVGSS-----GDIALHINPRMGNGTVVRNSLLNGSWG--SEEKKITHNPF 103 (164)
T ss_dssp CTTEEEEEEEECCTT-------CCCEEEEEECSSS-----CCCSEEEECCTTTCCCEEECEETTEEC--CCEECCSCCCC
T ss_pred ccCCEEEEEEEECCC-------CCEEEEEEecCCC-----CCEEEEEEEEcCCCEEEEEcccCCEec--cceeeCCCCcc
Confidence 346678899998666 6777777654332 5678888763 1 12 11101001268
Q ss_pred CCCCeEEEEEeeeecCCCCCCCCCCceEEEeecCCcEEEEEecc-cce
Q psy8027 79 LPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIV-PIN 125 (250)
Q Consensus 79 ~pgqs~~~~lpl~~~g~~~~~~p~~~LQVAIKnN~dVfYF~~~i-pl~ 125 (250)
.+|+..+..+-+..+ -.+|+| |+.-++.|...+ |++
T Consensus 104 ~~G~~F~l~I~~~~~----------~f~V~V-Ng~~~~~F~hR~~pl~ 140 (164)
T 1x50_A 104 GPGQFFDLSIRCGLD----------RFKVYA-NGQHLFDFAHRLSAFQ 140 (164)
T ss_dssp CTTSEEEEEEEECSS----------EEEEEE-SSSEEEEEECCCGGGG
T ss_pred cCCCeEEEEEEEcCC----------EEEEEE-CCEEEEEecCCCCCHH
Confidence 889988777754222 268888 345688888887 653
No 31
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A
Probab=23.08 E-value=2.7e+02 Score=22.28 Aligned_cols=89 Identities=15% Similarity=0.240 Sum_probs=53.6
Q ss_pred CCCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheecccC---------------ccccccCCCCCCCcc
Q psy8027 13 EKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKN---------------SFGLTPARPLQVMSP 77 (250)
Q Consensus 13 ~~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNkN---------------sFGl~P~~~l~~p~~ 77 (250)
.-|+-+.|.|..... .++..++|.-.+. +-++.|+-||.- .+| ...-. ..-|
T Consensus 40 ~~G~~I~I~G~v~~~-------a~rF~INl~~g~~---~~~dIalHfnpRF~~~~~VV~NS~~~g~WG--~EEr~-~~~P 106 (164)
T 3i8t_A 40 SVGMSVYIQGMAKEN-------MRRFHVNFAVGQD---DGADVAFHFNPRFDGWDKVVFNTMQSGQWG--KEEKK-KSMP 106 (164)
T ss_dssp CTTCEEEEEEEECTT-------CCBEEEEEESSSS---TTCCEEEEEEEECSSSCEEEEEEEETTEEC--CCEEE-SCCC
T ss_pred CCCCEEEEEEEECCC-------CCEEEEEeccCCC---CCCCEEEEEEeeeCCCCEEEEEcccCCEeC--cceec-CCCC
Confidence 446679999988665 6676666653332 455777777652 122 11101 1125
Q ss_pred CCCCCeEEEEEeeeecCCCCCCCCCCceEEEeecCCcEEEEEecccce
Q psy8027 78 LLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPIN 125 (250)
Q Consensus 78 l~pgqs~~~~lpl~~~g~~~~~~p~~~LQVAIKnN~dVfYF~~~ipl~ 125 (250)
..+|+..+..+-+..+ ..+|+| |+.-.+.|.-.+|++
T Consensus 107 F~~G~~F~l~I~~~~~----------~f~V~V-Ng~~~~~F~hR~pl~ 143 (164)
T 3i8t_A 107 FQKGKHFELVFMVMPE----------HYKVVV-NGNSFYEYGHRLPVQ 143 (164)
T ss_dssp CCTTCEEEEEEEECSS----------EEEEEE-TTEEEEEEECSSCGG
T ss_pred ccCCCEEEEEEEEcCC----------EEEEEE-CCeEEEEECCCCCHH
Confidence 8889988877764322 267777 344577888877754
No 32
>1is3_A Congerin II; complex with lactose and MES, sugar binding protein; HET: LAT MES; 1.45A {Conger myriaster} SCOP: b.29.1.3 PDB: 1is4_A* 1is5_A 1is6_A* 1wld_A* 1wlw_A* 1wlc_A* 3ak0_A* 3ajz_A*
Probab=22.91 E-value=2.6e+02 Score=21.45 Aligned_cols=90 Identities=10% Similarity=0.184 Sum_probs=54.9
Q ss_pred CCCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheecccCccc-------cccCCCC----------CCC
Q psy8027 13 EKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKNSFG-------LTPARPL----------QVM 75 (250)
Q Consensus 13 ~~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNkNsFG-------l~P~~~l----------~~p 75 (250)
.-|+-+.|.|..... .++..++|. .. + ++.|+-||.- |. ++-.+-. .-+
T Consensus 12 ~~G~~i~I~G~v~~~-------~~rF~Inl~--~~---~-~dialHfnpR-f~~~~~~~~IV~Ns~~~~g~Wg~Eer~~~ 77 (135)
T 1is3_A 12 KLGMYLTVGGVVNSN-------ATRFSINVG--ES---T-DSIAMHMDHR-FSYGADQNVLVLNSLVHNVGWQQEERSKK 77 (135)
T ss_dssp ETTCCEEEEEEECTT-------CCEEEEEEE--EE---T-TEEEEEEEEE-SSBTTBCSEEEEEEEETTTEECCCEEECC
T ss_pred ccCCEEEEEEEECCC-------CCEEEEEec--cC---C-CCEEEEEeec-CCCCCCCCEEEEeCccCCCcCccceEeCC
Confidence 347788999998666 677777773 22 1 4677777762 32 1100000 012
Q ss_pred ccCCCCCeEEEEEeeeecCCCCCCCCCCceEEEeecCCcEEEEEecccceEE
Q psy8027 76 SPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPINVY 127 (250)
Q Consensus 76 ~~l~pgqs~~~~lpl~~~g~~~~~~p~~~LQVAIKnN~dVfYF~~~ipl~vl 127 (250)
-|+.+|+..+..+-+..+ -.+|+| |+.-.+.|...+|++.+
T Consensus 78 ~PF~~G~~F~l~I~~~~~----------~f~V~v-ng~~~~~F~hR~p~~~i 118 (135)
T 1is3_A 78 FPFTKGDHFQTTITFDTH----------TFYIQL-SNGETVEFPNRNKDAAF 118 (135)
T ss_dssp CCCCTTSEEEEEEEECSS----------EEEEEC-TTSCEEEEECTTCCSEE
T ss_pred CcccCCCcEEEEEEEcCC----------EEEEEE-CCEEEEEecCCCCHHHC
Confidence 368889988777764322 267777 34568889888887654
No 33
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=22.77 E-value=42 Score=21.06 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=14.3
Q ss_pred ccCCcccHHHHHhhhccC
Q psy8027 129 MEDGEMERKTFLTTWKEI 146 (250)
Q Consensus 129 ~e~G~m~r~~Fl~~Wksi 146 (250)
..+|.++.++|...|+.+
T Consensus 48 ~~~g~i~~~ef~~~~~~~ 65 (66)
T 3li6_A 48 DGNGEIDQNEFAKFYGSI 65 (66)
T ss_dssp TCSSSCCHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 467888999998888764
No 34
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=22.08 E-value=1.6e+02 Score=24.10 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=41.8
Q ss_pred CCeEEEEEEEEeCC--CCccchhheecccCccccccCCCCCCCccCCCCCeEEEEEeeeec
Q psy8027 35 IGVIEMELTFTNKS--MAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATT 93 (250)
Q Consensus 35 ~g~i~l~l~itN~s--~~~~~~faiQfNkNsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~~ 93 (250)
+-++.++++++|-. .-|+.+++..+.-|--=|+-+...+ +..|+++.+..+.+|+...
T Consensus 61 ~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~-~~tIpa~g~~~v~Vpv~v~ 120 (174)
T 1yyc_A 61 GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPD-PGSLVGSGTTVLDVPVKVA 120 (174)
T ss_dssp SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESC-CCBCCSSEEEEEEEEEEES
T ss_pred eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCC-CceECCCCcEEEEEEEEEE
Confidence 56688999999955 4677777777777755444433222 3478899999999999874
No 35
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=21.66 E-value=2.8e+02 Score=21.29 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=54.3
Q ss_pred CCCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheecccC--------------ccccccCCCCCCCccC
Q psy8027 13 EKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKN--------------SFGLTPARPLQVMSPL 78 (250)
Q Consensus 13 ~~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNkN--------------sFGl~P~~~l~~p~~l 78 (250)
.-|+-+.|.|..... .++..+++.-.. .+-++.|+.||.- .+| +..-.. .-|.
T Consensus 17 ~~G~~i~I~G~v~~~-------a~rF~Inl~~g~---~~~~dialHfnpRf~~~~vV~Ns~~~g~Wg--~Eer~~-~~PF 83 (138)
T 3zxf_A 17 RPGTVLRIRGLVPPN-------ASRFHVNLLCGE---EQGSDAALHFNPRLDTSEVVFNSKEQGSWG--REERGP-GVPF 83 (138)
T ss_dssp CSSEEEEEEEEECTT-------CCBEEEEEESSS---STTCCEEEEEEEETTTTEEEEEEEETTEEC--CCEECS-SCCC
T ss_pred CCCCEEEEEEEECCC-------CCEEEEEeeeCC---CCCCCEEEEEEEEcCCCEEEEECccCCEeC--cCEEeC-CCCc
Confidence 346678999998665 667766665321 2446777777752 233 221111 1258
Q ss_pred CCCCeEEEEEeeeecCCCCCCCCCCceEEEeecCCcEEEEEecccce
Q psy8027 79 LPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPIN 125 (250)
Q Consensus 79 ~pgqs~~~~lpl~~~g~~~~~~p~~~LQVAIKnN~dVfYF~~~ipl~ 125 (250)
.+|+..+..+-+..+ ..+|+| |+...+.|...+|++
T Consensus 84 ~~G~~F~l~I~~~~~----------~f~V~v-ng~~~~~f~hR~~~~ 119 (138)
T 3zxf_A 84 QRGQPFEVLIIASDD----------GFKAVV-GDAQYHHFRHRLPLA 119 (138)
T ss_dssp CTTEEEEEEEEECSS----------EEEEEE-TTEEEEEEECSSCGG
T ss_pred cCCCEEEEEEEEcCC----------eEEEEE-CCeEEEEECCCCCHH
Confidence 899988887764322 267887 344578888887754
No 36
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=20.54 E-value=1.5e+02 Score=21.29 Aligned_cols=27 Identities=7% Similarity=0.305 Sum_probs=19.2
Q ss_pred CCCCceEEEEeeCCcchhHHHHHHHHHHhc
Q psy8027 218 PGDPSVTLSLKSRSSDVAQDIFHAYDAILH 247 (250)
Q Consensus 218 ~~~~~~~~~lKs~~~~~~pli~~~~~~il~ 247 (250)
..++++++.++|+..+. +.|.||.+++
T Consensus 17 t~dGdYrL~itcpkKe~---LLqSIEgmik 43 (76)
T 2rp4_A 17 TPDGDYRLAITCPNKEW---LLQSIEGMIK 43 (76)
T ss_dssp CTTTBEEEEEEESCHHH---HHHHHHHHHH
T ss_pred ccCCceEEEEEeCcHHH---HHHHHHHHHH
Confidence 34678999999999965 4555555543
No 37
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=20.00 E-value=1.1e+02 Score=25.34 Aligned_cols=55 Identities=9% Similarity=0.145 Sum_probs=37.2
Q ss_pred CCeEEEEEEEEeCCCCccchhheecccCccccccCCCCCCCccCCCCCeEEEEEeeeecC
Q psy8027 35 IGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTG 94 (250)
Q Consensus 35 ~g~i~l~l~itN~s~~~~~~faiQfNkNsFGl~P~~~l~~p~~l~pgqs~~~~lpl~~~g 94 (250)
+......++|+|....|+.--.++-.---+-..+ . ..+|.||++.+..+-.+..+
T Consensus 133 g~~~~~~f~i~N~G~~pL~I~~v~~scgct~~~~----~-~~~i~PGe~~~i~v~~~~~~ 187 (220)
T 2qsv_A 133 GETTKAAIEIRNVGAGPLRLHSVTTRNPALTAVP----D-RTEIKPGGSTLLRIAVDPQV 187 (220)
T ss_dssp TSCEEEEEEEEECSSSCEEEEEEEECSTTEEEEE----S-CSEECTTCEEEEEEEECHHH
T ss_pred CCeEEEEEEEEECCCCCEEEEEEEeCCCCEeeec----C-CccCCCCCEEEEEEEEecCC
Confidence 4667789999999999988766663222111111 1 34799999988888776554
Done!