RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8027
(250 letters)
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform
domain, sandwich domain, endocytosis, adaptor,
endocytosis/exocytosis complex; 1.60A {Homo sapiens}
SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A
2iv9_A 2iv8_A
Length = 258
Score = 246 bits (628), Expect = 2e-82
Identities = 137/246 (55%), Positives = 182/246 (73%), Gaps = 16/246 (6%)
Query: 2 YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61
Y PK WLPA K KG+EI GTF+ + G I ME+ FTNK++ M +FAIQ NK
Sbjct: 28 YVAPKAVWLPAVKAKGLEISGTFTHRQ-------GHIYMEMNFTNKALQHMTDFAIQFNK 80
Query: 62 NSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACI 121
NSFG+ P+ PL + +PL+P+ S++ SLP+ T G V +MEPL NLQVAVKNN+DVFYF+C+
Sbjct: 81 NSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCL 140
Query: 122 VPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQ 181
+P+NV F+EDG+MER+ FL TWK+IP +NE +QF + L AD + S+++
Sbjct: 141 IPLNVLFVEDGKMERQVFLATWKDIPNENE---------LQFQIKECHLNADTVSSKLQN 191
Query: 182 NNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHA 241
NNV+TIAKRNVEG+DMLYQSL+LTNGIW+L EL+IQPG+P+ TLSLK R+ +V+Q I+
Sbjct: 192 NNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV 251
Query: 242 YDAILH 247
YD+IL
Sbjct: 252 YDSILK 257
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 35/141 (24%)
Query: 42 LTFTNKSMA----PMANFAIQVNKNSFGLTPARPLQVMSPLL----PSLSVEASL--PMA 91
LT K + I ++ +S LTP ++ L L E P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 92 TT--GAVQRMEPLT----------NLQVAVKNNLDVF--------YFACIVPINVYFMED 131
+ R T L ++++L+V + V F
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPS 384
Query: 132 GEMERKTFLTTWKEIPTQNED 152
+ W ++ +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVM 405
Score = 32.5 bits (73), Expect = 0.13
Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 46/170 (27%)
Query: 96 VQRMEPLTNLQVAVKNNLDVFYFACIVPINVYFME-DGEMERKTFLT--TWKEIPTQNED 152
V R++P L+ A+ + + + G KT++ Q +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKN------VLIDGVLGSG----KTWVALDVCLSYKVQCKM 180
Query: 153 GNAIF------CCQVQFTLTNIALGADAIVSRMKQN------NVFTIAKRNVEGKD---M 197
IF C + L + ++ ++ N + I R +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 198 LYQSLRLTNGIWVLNELKIQPGDPSV---------TLSLKSRSSDVAQDI 238
L +S N + VL ++ + L L +R V +
Sbjct: 237 LLKSKPYENCLLVLLNVQ----NAKAWNAFNLSCKIL-LTTRFKQVTDFL 281
Score = 28.7 bits (63), Expect = 2.0
Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 33/125 (26%)
Query: 102 LTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTT-WKEI---PTQNEDGNAIF 157
Q K+ L VF A + + ++D M + I +F
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 158 CCQVQFTLTNIALGADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQ 217
KQ + ++ VE LR N ++++ +K +
Sbjct: 69 -----------------WTLLSKQEE---MVQKFVEE------VLR-INYKFLMSPIKTE 101
Query: 218 PGDPS 222
PS
Sbjct: 102 QRQPS 106
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis,
endocytosis/exocytosis complex; 1.22A {Mus musculus}
SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A
1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Length = 247
Score = 31.2 bits (70), Expect = 0.27
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 6/133 (4%)
Query: 40 MELTFTNKSMAPMANFAIQV---NKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAV 96
M + + NK+ NF + + L + V + V+ + +
Sbjct: 46 MFIFYGNKTSTQFLNFTPTLICADDLQTNLNL-QTKPVDPTVDGGAQVQQVVNIECISDF 104
Query: 97 QRMEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAI 156
P+ N+Q + +N F + EM + F WK++ ++ I
Sbjct: 105 TEA-PVLNIQFRYGGTFQNVSVKLPITLN-KFFQPTEMASQDFFQRWKQLSNPQQEVQNI 162
Query: 157 FCCQVQFTLTNIA 169
F +
Sbjct: 163 FKAKHPMDTEITK 175
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport;
2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A
2dwy_A 2dwx_A
Length = 153
Score = 30.0 bits (67), Expect = 0.39
Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 3 TPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKN 62
P + A G I F+++ P P + V+ + + N + P+ + +Q
Sbjct: 22 KPSSALPVTAYDKNGFRILFHFAKECPPGRPDVLVVVV--SMLNMAPLPVKSIVLQ---- 75
Query: 63 SFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTN 104
+ +++ P + P+ A+ ++ L N
Sbjct: 76 -AAAPKSMKVKLQPP--SGTELSPFSPIQPPAAITQVMLLAN 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.56
Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 79/219 (36%)
Query: 70 RPLQV------MSPLLPSLSV----------EASLPMATTGAVQRMEPLTNLQVAVKNNL 113
RPL + L+P+ S LP T G EP T ++ K
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--- 63
Query: 114 DVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGAD 173
F+ ++++ E + + C +F G D
Sbjct: 64 --------------FLG--------YVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGND 100
Query: 174 --AIVSRMKQNNVFTIAKRNVEGKDML---YQSLRLTNGIWVLNELKIQPGDPSVTLSLK 228
A+ +++ Q N T+ K K+++ + + S L +
Sbjct: 101 IHALAAKLLQENDTTLVKT----KELIKNYITARIMAKR-------PFDKKSNS-AL-FR 147
Query: 229 SRSSDVA-------------------QDIFHAYDAILHA 248
+ A +D++ Y ++
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Score = 29.2 bits (65), Expect = 1.6
Identities = 59/308 (19%), Positives = 98/308 (31%), Gaps = 120/308 (38%)
Query: 13 EKGKGME----------IW-----------GTFS----RKPNPAT--------PGIGVIE 39
E+G GM+ +W G FS NP G + E
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYG-FSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 40 --MELTFTNKSMAPMANFAI--QVNKNSFGLT---PARPL------QVMSPLLPSLSVEA 86
+ F + I ++N++S T L Q P L +E
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ---PAL--TLME- 1740
Query: 87 SLPMATTGAVQRMEPLTNLQVAVKNNLDVF-------Y--FACIVPINVYFMED------ 131
A A + ++ + F Y A + +V +E
Sbjct: 1741 ---KA---AFEDLKSKGLIPAD-----ATFAGHSLGEYAALASLA--DVMSIESLVEVVF 1787
Query: 132 --GEMERKTFLTTWKEIPTQNEDGN------AIFCCQVQFTLTNIALGADAIVSRM--KQ 181
G T + ++E G AI +V + + AL +V R+ +
Sbjct: 1788 YRGM--------TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL--QYVVERVGKRT 1837
Query: 182 NNVFTIAKRNVEGK------DMLYQSL-RLTNGIWVLNELKIQPGDP---SVTLSLKSRS 231
+ I NVE + D+ ++L +TN VLN +K+Q D +LSL+
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDL--RALDTVTN---VLNFIKLQKIDIIELQKSLSLE--- 1889
Query: 232 SDVAQDIF 239
+V +F
Sbjct: 1890 -EVEGHLF 1896
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex
AP-2, endocytosis, cell membrane, coated PIT binding,
membrane, disease mutation; 1.90A {Mus musculus}
Length = 273
Score = 30.1 bits (67), Expect = 0.64
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 6/133 (4%)
Query: 40 MELTFTNKSMAPMANFAIQV---NKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAV 96
M + + NK+ NF + + L + V + V+ + +
Sbjct: 72 MFIFYGNKTSTQFLNFTPTLICADDLQTNLN-LQTKPVDPTVDGGAQVQQVVNIECISDF 130
Query: 97 QRMEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAI 156
P+ N+Q + +N F + EM + F WK++ ++ I
Sbjct: 131 TEA-PVLNIQFRYGGTFQNVSVKLPITLN-KFFQPTEMASQDFFQRWKQLSNPQQEVQNI 188
Query: 157 FCCQVQFTLTNIA 169
F +
Sbjct: 189 FKAKHPMDTEITK 201
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 29.6 bits (67), Expect = 1.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 41 ELTFTNKSMAPMANFAIQVNKNS--FGLTPARPLQ-VMSPLLPSLSVEAS 87
+ FT ++ +A A +VN+ + G AR L VM L+ +S AS
Sbjct: 366 NIAFTTDAVKKIAEAAFRVNEKTENIG---ARRLHTVMERLMDKISFSAS 412
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 28.8 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 41 ELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQ-VMSPLLPSLSVEAS 87
+ FT ++ +A A +VN+ + AR L VM L+ +S AS
Sbjct: 232 NIAFTTDAVKKIAEAAFRVNEKTEN-IGARRLHTVMERLMDKISFSAS 278
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta
sandwich, protein transport; HET: MLY; 1.73A
{Saccharomyces cerevisiae}
Length = 123
Score = 27.6 bits (61), Expect = 1.9
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 3 TPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQV 59
T + ++I SR+ N VI + FTN S +P++N +
Sbjct: 4 TTTAPARTLVNQSPNLKIEFEISRESN------SVIRIXSFFTNLSSSPISNLVFLL 54
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design,
computational design; 1.09A {Mus musculus} PDB: 2a7b_A
1gyv_A 1gyw_A
Length = 122
Score = 27.6 bits (61), Expect = 2.0
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 23 TFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQV 59
F+ + + P + VI + +N + M +F Q
Sbjct: 18 EFTFERSNTNPSVTVITI--QASNSTELDMTDFVFQA 52
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.0
Identities = 6/29 (20%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 61 KNSFGLTPARPLQVMSP-LLPSLSVEASL 88
K + A L++ + P+L+++A++
Sbjct: 19 KQALKKLQAS-LKLYADDSAPALAIKATM 46
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin,
golgi, adaptin, endocytosis, adaptor; 1.81A {Mus
musculus} SCOP: b.1.10.2
Length = 140
Score = 26.9 bits (59), Expect = 3.8
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 23 TFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQV 59
F+ + + P + VI + +N + M +F Q
Sbjct: 36 EFTFERSNTNPSVTVITI--QASNSTELDMTDFVFQA 70
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A
{Halothermothrix orenii}
Length = 458
Score = 27.5 bits (62), Expect = 4.3
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 12 AEKGKGMEIWGTFSRKPN 29
E GKG IW FS P
Sbjct: 33 NEDGKGESIWDRFSHTPG 50
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A
{Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A*
2o9r_A*
Length = 454
Score = 27.5 bits (62), Expect = 4.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 12 AEKGKGMEIWGTFSRKP 28
E G+ IW TF + P
Sbjct: 34 DEGGRTPSIWDTFCQIP 50
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase,
polysaccharide degradation, transition state mimic,
carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga
maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A*
1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A*
2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A*
2j7f_A* 2j7g_A* 2j7h_A* ...
Length = 468
Score = 27.5 bits (62), Expect = 4.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 12 AEKGKGMEIWGTFSRKP 28
G GM IW TFS P
Sbjct: 48 LADGAGMSIWHTFSHTP 64
>2hcn_A RNA-directed RNA polymerase (NS5); WEST-NIle virus RNA polymerase,
structural genomics, marseil structural genomics program
@ AFMB, MSGP, vizier; 2.35A {Kunjin virus} PDB: 2hcs_A
2hfz_A
Length = 595
Score = 27.7 bits (61), Expect = 4.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 125 NVYFMEDGEMERKTFLTTWKEIP 147
V+ E+ ME KT + W ++P
Sbjct: 510 RVWIEENEWMEDKTPVEKWSDVP 532
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A
{Bacillus circulans} SCOP: c.1.8.4
Length = 449
Score = 27.4 bits (62), Expect = 4.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 12 AEKGKGMEIWGTFSRKP 28
E G+GM IW TF+ P
Sbjct: 25 NEDGRGMSIWDTFAHTP 41
>3fj0_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase; HET: BGC;
1.15A {Uncultured bacterium} PDB: 3cmj_A 3fiz_A*
3fiy_A*
Length = 465
Score = 27.5 bits (62), Expect = 4.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 12 AEKGKGMEIWGTFSRKPN 29
E GKG IW F+R P
Sbjct: 46 NEDGKGESIWDRFTRIPG 63
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; HET: 7PE; 1.90A {Clostridium
cellulovorans}
Length = 453
Score = 27.5 bits (62), Expect = 5.0
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 12 AEKGKGMEIWGTFSRKPN 29
E KG IW FS P
Sbjct: 26 KEDEKGESIWDRFSHIPG 43
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of
glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP}
SCOP: c.1.8.4 PDB: 1gon_A
Length = 479
Score = 27.5 bits (62), Expect = 5.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 12 AEKGKGMEIWGTFSRKP 28
AE G+ IW T++R P
Sbjct: 38 AEDGRTPSIWDTYARTP 54
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken
structural genomics/PR initiative, RSGI, structural
genomics, hydrolase; 0.99A {Thermus thermophilus} SCOP:
c.1.8.4 PDB: 1np2_A
Length = 431
Score = 27.4 bits (62), Expect = 5.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 12 AEKGKGMEIWGTFSRKPN 29
E G+G IW F+++P
Sbjct: 24 QEDGRGPSIWDAFAQRPG 41
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase,
covalent enzyme-GLYC intermediate, alpha/beta barrel;
HET: G2F NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4
PDB: 1tr1_A 1bgg_A* 1bga_A 1uyq_A*
Length = 447
Score = 27.5 bits (62), Expect = 5.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 12 AEKGKGMEIWGTFSRKP 28
E G+G+ IW TF+ P
Sbjct: 25 QEDGRGLSIWDTFAHTP 41
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; 1.63A {Trichoderma reesei}
Length = 473
Score = 27.2 bits (61), Expect = 5.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 12 AEKGKGMEIWGTFSRKP 28
+ G+G IW TF +P
Sbjct: 29 DQDGRGPSIWDTFCAQP 45
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase;
HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A*
3gnr_A*
Length = 488
Score = 27.1 bits (61), Expect = 5.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 12 AEKGKGMEIWGTFSRKP 28
E G+G IW TF+
Sbjct: 37 KEDGRGQTIWDTFAHTF 53
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens}
SCOP: b.1.10.2
Length = 146
Score = 26.5 bits (58), Expect = 6.3
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 23 TFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQV 59
F+ + + P + VI + +N + M +F Q
Sbjct: 42 EFTFERSNTNPSVTVITI--QASNSTELDMTDFVFQA 76
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase;
HET: LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Length = 481
Score = 27.1 bits (61), Expect = 6.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 12 AEKGKGMEIWGTFSRKP 28
A G+G IW F+ P
Sbjct: 40 ASGGRGPSIWDAFAHTP 56
>2j7u_A RNA dependent RNA polymerase; nucleoside binding site, flavivirus,
high-throughput assay, protein; HET: PGE; 1.85A {Dengue
virus} PDB: 2j7w_A*
Length = 635
Score = 27.0 bits (59), Expect = 7.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 125 NVYFMEDGEMERKTFLTTWKEIP 147
V+ E+ ME KT +TTW+ +P
Sbjct: 550 RVWIEENPWMEDKTPVTTWENVP 572
>1pbg_A PGAL, 6-phospho-beta-D-galactosidase; hydrolase (glycosyl
hydrolase); 2.30A {Lactococcus lactis} SCOP: c.1.8.4
PDB: 3pbg_A 2pbg_A 4pbg_A*
Length = 468
Score = 26.8 bits (60), Expect = 7.2
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 12 AEKGKGMEIWGTFSRKPNPATP 33
GKG W + T
Sbjct: 25 HTDGKGPVAWDKYLEDNYWYTA 46
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN
GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete
chrysosporium} PDB: 2e40_A*
Length = 465
Score = 26.7 bits (60), Expect = 9.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 12 AEKGKGMEIWGTFSRKP 28
+ G+ IW TF + P
Sbjct: 29 DKDGREPSIWDTFCKAP 45
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral
beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA;
1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X*
Length = 469
Score = 26.3 bits (59), Expect = 10.0
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 12 AEKGKGMEIWGTFSRKP 28
GKG +W TF+ +
Sbjct: 23 DADGKGPCVWDTFTHQG 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.399
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,640,976
Number of extensions: 202707
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 34
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)