RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8027
(250 letters)
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain,
N-terminal subdomain {Human (Homo sapiens) [TaxId:
9606]}
Length = 120
Score = 159 bits (403), Expect = 1e-50
Identities = 69/126 (54%), Positives = 91/126 (72%), Gaps = 7/126 (5%)
Query: 1 MYTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVN 60
Y PK WLPA K KG+EI GTF+ + G I ME+ FTNK++ M +FAIQ N
Sbjct: 2 GYVAPKAVWLPAVKAKGLEISGTFTHRQ-------GHIYMEMNFTNKALQHMTDFAIQFN 54
Query: 61 KNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFAC 120
KNSFG+ P+ PL + +PL+P+ S++ SLP+ T G V +MEPL NLQVAVKNN+DVFYF+C
Sbjct: 55 KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSC 114
Query: 121 IVPINV 126
++P+NV
Sbjct: 115 LIPLNV 120
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal
subdomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 145 bits (367), Expect = 4e-45
Identities = 68/120 (56%), Positives = 91/120 (75%), Gaps = 9/120 (7%)
Query: 128 FMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQNNVFTI 187
F+EDG+MER+ FL TWK+IP +NE +QF + L AD + S+++ NNV+TI
Sbjct: 2 FVEDGKMERQVFLATWKDIPNENE---------LQFQIKECHLNADTVSSKLQNNNVYTI 52
Query: 188 AKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDAILH 247
AKRNVEG+DMLYQSL+LTNGIW+L EL+IQPG+P+ TLSLK R+ +V+Q I+ YD+IL
Sbjct: 53 AKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQVYDSILK 112
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein
Gga3 domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 30.2 bits (68), Expect = 0.10
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 17 GMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQV 59
G I F+++ P P V+ + ++ N + P+ + +Q
Sbjct: 28 GFRILFHFAKECPPGRPD--VLVVVVSMLNMAPLPVKSIVLQA 68
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding
protein Gga1 domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 129
Score = 29.0 bits (65), Expect = 0.24
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 17 GMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQV 59
G I F+R P P + V+ + + + + P+ N Q
Sbjct: 12 GFRILFHFARDPLPGRSDVLVVVV--SMLSTAPQPIRNIVFQS 52
>d1bf0a_ g.8.1.1 (A:) Calcicludine (cac) {Green mamba (Dendroaspis
angusticeps) [TaxId: 8618]}
Length = 60
Score = 26.4 bits (58), Expect = 0.64
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 2 YTPPKQCWLPAEKG 15
+ PP C P G
Sbjct: 1 WQPPWYCKEPVRIG 14
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 120
Score = 27.4 bits (61), Expect = 0.81
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 23 TFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQV 59
F+ + + P + VI + +N + M +F Q
Sbjct: 16 EFTFERSNTNPSVTVITI--QASNSTELDMTDFVFQA 50
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 27.3 bits (60), Expect = 1.8
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 16/72 (22%)
Query: 175 IVSRMKQNNVFTIAKRNVEGKDMLYQSL-RLTNGIWVLNELKIQPGDPSVTLSLKSRSSD 233
+ ++ Q N+ I + LYQ+ L G V L SS+
Sbjct: 189 MTEKLSQKNINLIFAVTENVVN-LYQNYSELIPGTTVG--------------VLSMDSSN 233
Query: 234 VAQDIFHAYDAI 245
V Q I AY I
Sbjct: 234 VLQLIVDAYGKI 245
>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
{Lactococcus lactis [TaxId: 1358]}
Length = 468
Score = 26.7 bits (58), Expect = 2.8
Identities = 5/26 (19%), Positives = 6/26 (23%)
Query: 12 AEKGKGMEIWGTFSRKPNPATPGIGV 37
GKG W + T
Sbjct: 25 HTDGKGPVAWDKYLEDNYWYTAEPAS 50
>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human
papillomavirus type 18 [TaxId: 333761]}
Length = 194
Score = 25.8 bits (57), Expect = 3.9
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 122 VPINVYFMEDGEMERKTFLTTWKEIPTQNEDGN 154
+ VYF DG + W + + G
Sbjct: 120 QTVQVYF--DGNKDNCMTYVAWDSVYYMTDAGT 150
>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus
[TaxId: 274]}
Length = 426
Score = 25.9 bits (56), Expect = 5.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 13 EKGKGMEIWGTFSRKPNPATPGIG 36
E G+G IW F+++P G
Sbjct: 22 EDGRGPSIWDAFAQRPGAIRDGST 45
>d1ok8a1 b.1.18.4 (A:298-394) Envelope glycoprotein {Dengue virus
type 2 [TaxId: 11060]}
Length = 97
Score = 24.8 bits (54), Expect = 5.0
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 22 GTFSRKPNPATPGIGVIEMELTFTNKSM 49
G F A G I + + +
Sbjct: 7 GKFKVVKEIAETQHGTIVIRVQYEGDGS 34
>d1r6na_ b.91.1.1 (A:) E2 regulatory, transactivation domain {Human
papillomavirus type 11 [TaxId: 10580]}
Length = 196
Score = 25.4 bits (56), Expect = 6.1
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 122 VPINVYFMEDGEMERKTFLTTWKEIPTQNEDG 153
+ V F DG + W I Q+ D
Sbjct: 115 NTVEVKF--DGCEDNVMEYVVWTHIYLQDNDS 144
>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa
[TaxId: 1406]}
Length = 447
Score = 25.9 bits (56), Expect = 6.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 13 EKGKGMEIWGTFSRKPNPATPG 34
E G+G+ IW TF+ P G
Sbjct: 26 EDGRGLSIWDTFAHTPGKVFNG 47
>d1qoxa_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus circulans,
subsp. alkalophilus [TaxId: 1397]}
Length = 449
Score = 25.5 bits (55), Expect = 6.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 13 EKGKGMEIWGTFSRKPNPATPG 34
E G+GM IW TF+ P G
Sbjct: 26 EDGRGMSIWDTFAHTPGKVKNG 47
>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima
[TaxId: 2336]}
Length = 443
Score = 25.5 bits (55), Expect = 7.6
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 13 EKGKGMEIWGTFSRKPNPATPGIG 36
G GM IW TFS P G
Sbjct: 25 ADGAGMSIWHTFSHTPGNVKNGDT 48
>d1ztxe1 b.1.18.4 (E:300-400) Envelope glycoprotein {West Nile
virus [TaxId: 11082]}
Length = 101
Score = 24.3 bits (53), Expect = 7.6
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 22 GTFSRKPNPATPGIGVIEMELTFTNKSM 49
F PA G G + +EL +T
Sbjct: 8 KAFKFLGTPADTGHGTVVLELQYTGTDG 35
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 25.5 bits (55), Expect = 8.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 41 ELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQ-VMSPLLPSLSVEAS 87
+ FT ++ +A A +VN+ + AR L VM L+ +S AS
Sbjct: 365 NIAFTTDAVKKIAEAAFRVNEKTEN-IGARRLHTVMERLMDKISFSAS 411
>d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId:
1931]}
Length = 464
Score = 25.2 bits (54), Expect = 9.0
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 13 EKGKGMEIWGTFSRKPNPATPG 34
E G+ IW T++R P G
Sbjct: 25 EDGRTPSIWDTYARTPGRVRNG 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.399
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 882,840
Number of extensions: 37800
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 23
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)