BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8029
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 4/170 (2%)
Query: 192 AIFNNVP-NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQV 250
AI +N+P + + LD+ N +S LPS F L KL+ Y N N+ Q P +F E+K L+
Sbjct: 30 AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89
Query: 251 IKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310
+ ++ +K L+ LP G+F L L + L + + LP +F + T +T + L G+ +L
Sbjct: 90 LWVTDNK--LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL-GYNELQ 146
Query: 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
SLP +F L +L L N+LK +PE F+ L EL TL L NNQL+ +
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 98/179 (54%), Gaps = 3/179 (1%)
Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
+ L+L N+L +L F+ + LR L ++ N + LP+G+F +L+ L+T + N+ Q
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 296
P +F ++ L +++ ++ LK LP +F +L L + LG + + LP +F T
Sbjct: 100 LPIGVFDQLVNLAELRL--DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
++ + L ++ L +P F +L L+L N+LK +PE F+SL++L L L+ N
Sbjct: 158 SLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F L ++ + L+ NK + L IFK LE+L + N + L GVF + L L
Sbjct: 57 FHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
L N + + P +F +LT L L+L +N+L +L + +F+ + +L+ L + N + +P G
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
F L +L+T ++N+ + P+ F ++ L+++++
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 3/179 (1%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
K + L NK ++ L F +L L L N + L +G+F+ + L+ L + N +
Sbjct: 39 TKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
+ +F L +L L LD NQL +L +F+++ L L + N + LP GVF L
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 223 KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE 281
L+ +N+ + P+ F ++ L+ +K+ ++ LK +P G F +L L + L E
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ--LKRVPEGAFDSLEKLKMLQLQE 214
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 118/268 (44%), Gaps = 39/268 (14%)
Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
N N V KKLT++PS + D KKL +LQ NKL LP F L +L L L +N+
Sbjct: 16 NNKNSVDCSSKKLTAIPSNIPADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72
Query: 357 LENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL------TFDEY 408
L+ + + + L L +L ++ N+L+ + + FD L +L + L N L FD
Sbjct: 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 409 QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSN 468
L ++L YN + SL +TSLKEL L +N +P+ ++
Sbjct: 133 ----------TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182
Query: 469 KLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIR 528
TL L NQ+ + A D E M+ L +NP C C+ I
Sbjct: 183 LKTLKLDNNQLK-------RVPEGAFDSLEKLKMLQ-------LQENPWDCTCNG---II 225
Query: 529 FVSKKMTKTVYQMLELV-TDNLECFGNA 555
+++K + K + L V T E G A
Sbjct: 226 YMAKWLKKKADEGLGGVDTAGCEKGGKA 253
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 9/190 (4%)
Query: 60 LPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHK 119
LP + F L +KL + +N P+ + F L ++ + ++ NK + L
Sbjct: 52 LPSKAFHRL-TKLRLLYLNDNKLQTLPAGI-------FKELKNLETLWVTDNK-LQALPI 102
Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
+F L L L N + L VF + KL L LG N++ + +F LTSL+ L
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
L +NQL + F+ + L++L + N + +P G F L KL+ N +
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222
Query: 240 DLFAEMKYLQ 249
+ K+L+
Sbjct: 223 GIIYMAKWLK 232
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 130/248 (52%), Gaps = 11/248 (4%)
Query: 209 NISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF 268
+S +P G+ S+ R L N QM D F + +L+V+++ ++S++++ G F
Sbjct: 65 GLSEVPQGIPSNTRYLNLM---ENNIQMIQADTFRHLHHLEVLQLG--RNSIRQIEVGAF 119
Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
L LNT+ L ++ + +PS F + + + L + + S+PS F L++L+L
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRLDL 178
Query: 329 -QRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAF 387
+ KL+Y+ E FE L L LNL ++++ +L L GL L++S N +I +F
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSF 238
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE 447
GLSSL + + ++ ++ E + + L V L NL++N +SSL D + + L E
Sbjct: 239 HGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVEL---NLAHNNLSSLPHDLFTPLRYLVE 294
Query: 448 LDLRHNNF 455
L L HN +
Sbjct: 295 LHLHHNPW 302
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 17/225 (7%)
Query: 143 SGVFQYVPK-LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLR 201
S V Q +P + L+L N++ + + F++L L +L L N + + FN + +L
Sbjct: 67 SEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126
Query: 202 SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK 261
+L++ N ++++PSG F L KL+ + +N + P F + L + + K L+
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK-LE 185
Query: 262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV------LTGHKKLTSLPST 315
+ G F L L + LG +I ++P N+T +V ++G+ P +
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKDMP--------NLTPLVGLEELEMSGNHFPEIRPGS 237
Query: 316 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
F L KL + +++ + N F+ L L LNL +N L ++
Sbjct: 238 -FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 6/219 (2%)
Query: 114 ITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL 173
I + D F+ LE L L NSI ++ G F + L L+L N + + F+ L
Sbjct: 87 IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG-NNISILPSGVFSDLRKLQTFYANSN 232
+ LR L L +N + ++ FN VP+L LD+ + + G F L L+ Y N
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK--YLNLG 204
Query: 233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF 292
+ KD+ + + ++ + E+ G F L L + + S ++ + + F
Sbjct: 205 MCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262
Query: 293 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
++ + L H L+SLP LF + LV+L L N
Sbjct: 263 DGLASLVELNL-AHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 12/179 (6%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F+GL + + L N +T + F+ +L L LR N I + S F VP L LD
Sbjct: 119 FNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177
Query: 157 LGS-NDVAYMDPEIFKNLTSLRILNLDH---NQLINLTRAIFNNVPNLRSLDISGNNISI 212
LG + Y+ F+ L +L+ LNL + NLT + L L++SGN+
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLV-----GLEELEMSGNHFPE 232
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
+ G F L L+ + +++ + ++ F + L ++++ ++L LP LF L
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL--VELNLAHNNLSSLPHDLFTPL 289
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 8/225 (3%)
Query: 232 NRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL 291
N Q+ D F +++L+++++S K+ ++++ G F LP LNT+ L ++ + +P+
Sbjct: 45 NSIQVIRTDTFKHLRHLEILQLS--KNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQA 102
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL-QRNKLKYLPENLFESLKELYTL 350
F + + + L + + S+PS F L +L+L + +L+Y+ E FE L L L
Sbjct: 103 FEYLSKLRELWLR-NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYL 161
Query: 351 NLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY 410
NL L++I +L L L L+LS N+L+ I +F GL+SL + L H + E +
Sbjct: 162 NLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE-RN 220
Query: 411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
+ LK +LE +NLS+N + SL D + + L+ + L HN +
Sbjct: 221 AFDDLK---SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 28/242 (11%)
Query: 114 ITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL 173
I + D FK LE L L N + ++ G F +P L L+L N + + + F+ L
Sbjct: 47 IQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYL 106
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
+ LR L L +N + ++ FN VP+LR LD+ +L++L+ Y +
Sbjct: 107 SKLRELWLRNNPIESIPSYAFNRVPSLRRLDL-------------GELKRLE--YISEAA 151
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
F+ ++YL + +LK++P+ L L + L + + + F
Sbjct: 152 FEG-----LVNLRYLNLGMC-----NLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
T++ + L H ++ ++ F D K L +L L N L LP +LF L L ++L
Sbjct: 200 GLTSLRKLWLM-HAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLN 258
Query: 354 NN 355
+N
Sbjct: 259 HN 260
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 23/200 (11%)
Query: 47 LGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFS-----------NSPSNVGVLSPP 95
+G FN LP N + LF +TT+ T AF N+P + +
Sbjct: 76 VGAFNG-------LPSLNTLELFDN-RLTTVPTQAFEYLSKLRELWLRNNP--IESIPSY 125
Query: 96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
F+ + ++ + L K + + + F+G L LNL ++ ++ + + +L+ L
Sbjct: 126 AFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEEL 183
Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
+L N + + P F+ LTSLR L L H Q+ + R F+++ +L L++S NN+ LP
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPH 243
Query: 216 GVFSDLRKLQTFYANSNRFQ 235
+F+ L +L+ + N N +
Sbjct: 244 DLFTPLHRLERVHLNHNPWH 263
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 29/277 (10%)
Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 308
Q ++ + L E+P+ + N LN L E+SI + +D F + ++ I+
Sbjct: 15 QASRVICTRRELAEVPASIPVNTRYLN---LQENSIQVIRTDTFKHLRHL-EILQLSKNL 70
Query: 309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GL 366
+ + F L LEL N+L +P FE L +L L L+NN +E+I S +
Sbjct: 71 VRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRV 130
Query: 367 SGLNSLDLS-WNQLEQINLIAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVNLETI 424
L LDL +LE I+ AF+GL +L ++L NL L V LE +
Sbjct: 131 PSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN-------LTALVRLEEL 183
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDL 484
LS NR+ + +TSL++L L H + I + + L+LS N + +
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL-- 241
Query: 485 RTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNC 521
P++ T + R V LN NP CNC
Sbjct: 242 -----------PHDLFTPLHRLER-VHLNHNPWHCNC 266
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 125/233 (53%), Gaps = 10/233 (4%)
Query: 226 TFYAN--SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
T Y N N Q+ D F +++L+++++S K+ ++++ G F LP LNT+ L ++
Sbjct: 37 TRYLNLQENSIQVIRTDTFKHLRHLEILQLS--KNLVRKIEVGAFNGLPSLNTLELFDNR 94
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL-QRNKLKYLPENLFE 342
+ +P+ F + + + L + + S+PS F L +L+L + +L+Y+ E FE
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFE 153
Query: 343 SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
L L LNL L++I +L L L L+LS N+L+ I +F GL+SL + L H
Sbjct: 154 GLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Query: 403 LTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
+ E + + LK +LE +NLS+N + SL D + + L+ + L HN +
Sbjct: 214 VATIE-RNAFDDLK---SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 28/242 (11%)
Query: 114 ITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL 173
I + D FK LE L L N + ++ G F +P L L+L N + + + F+ L
Sbjct: 47 IQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYL 106
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
+ LR L L +N + ++ FN VP+LR LD+ +L++L+ Y +
Sbjct: 107 SKLRELWLRNNPIESIPSYAFNRVPSLRRLDL-------------GELKRLE--YISEAA 151
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
F+ ++YL + +LK++P+ L L + L + + + F
Sbjct: 152 FEG-----LVNLRYLNLGMC-----NLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
T++ + L H ++ ++ F D K L +L L N L LP +LF L L ++L
Sbjct: 200 GLTSLRKLWLM-HAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLN 258
Query: 354 NN 355
+N
Sbjct: 259 HN 260
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 23/200 (11%)
Query: 47 LGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFS-----------NSPSNVGVLSPP 95
+G FN LP N + LF +TT+ T AF N+P + +
Sbjct: 76 VGAFNG-------LPSLNTLELFDN-RLTTVPTQAFEYLSKLRELWLRNNP--IESIPSY 125
Query: 96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
F+ + ++ + L K + + + F+G L LNL ++ ++ + + +L+ L
Sbjct: 126 AFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEEL 183
Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
+L N + + P F+ LTSLR L L H Q+ + R F+++ +L L++S NN+ LP
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPH 243
Query: 216 GVFSDLRKLQTFYANSNRFQ 235
+F+ L +L+ + N N +
Sbjct: 244 DLFTPLHRLERVHLNHNPWH 263
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 120/276 (43%), Gaps = 27/276 (9%)
Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 308
Q ++ + L E+P+ + N LN L E+SI + +D F + ++ I+
Sbjct: 15 QASRVICTRRELAEVPASIPVNTRYLN---LQENSIQVIRTDTFKHLRHL-EILQLSKNL 70
Query: 309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GL 366
+ + F L LEL N+L +P FE L +L L L+NN +E+I S +
Sbjct: 71 VRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRV 130
Query: 367 SGLNSLDLS-WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425
L LDL +LE I+ AF+GL +L ++L L L V LE +
Sbjct: 131 PSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK------DIPNLTALVRLEELE 184
Query: 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLR 485
LS NR+ + +TSL++L L H + I + + L+LS N + +
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL--- 241
Query: 486 TLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNC 521
P++ T + R V LN NP CNC
Sbjct: 242 ----------PHDLFTPLHRLER-VHLNHNPWHCNC 266
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
E L+L+ + L F+ + KL L+L N + + +F +LT L L L +NQL +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
L +F+++ L L + GN + LPSGVF L KL+ N+N+ Q P F ++ L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
Q + +S ++ L+ +P G F L L T+ L
Sbjct: 158 QTLSLSTNQ--LQSVPHGAFDRLGKLQTITL 186
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%)
Query: 117 LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL 176
L F+G +L LNL N + L +GVF + +L L L +N +A + +F +LT L
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109
Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
L L NQL +L +F+ + L+ L ++ N + +P+G F L LQT ++N+ Q
Sbjct: 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 237 FPKDLFAEMKYLQVIKI 253
P F + LQ I +
Sbjct: 170 VPHGAFDRLGKLQTITL 186
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Query: 87 SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVF 146
+ + LS F GL + + L +N ++ L +F +L +L L N + L GVF
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF 103
Query: 147 QYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206
++ +L L LG N + + +F LT L+ L L+ NQL ++ F+ + NL++L +S
Sbjct: 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 207 GNNISILPSGVFSDLRKLQTFYANSNRF 234
N + +P G F L KLQT N+F
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 6/160 (3%)
Query: 201 RSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
+ +D G ++ +PSG+ +D KL S F + L + + Y++ L
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTEKLD---LQSTGLATLSDATFRGLTKLTWLNLDYNQ--L 71
Query: 261 KELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 320
+ L +G+F +L L T+ L + +A LP +F + T + + L G++ L SLPS +F
Sbjct: 72 QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRL 130
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
KL +L L N+L+ +P F+ L L TL+L NQL+++
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 53/252 (21%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
K L S+PS + D +KL +LQ L L + F L +L LNL NQL+ +++ V
Sbjct: 24 KSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
L+ L +L L+ NQL + L FD L+ L+ +
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLT----------------------------QLDKL 112
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV-- 482
L N++ SL +T LKEL L N IP ++N TL LS NQ+ V
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 483 -------DLRTLEIKAAAQDPNEDSTM-----VARSANIVI------LNDNPIACNCSNY 524
L+T+ + D + T+ + ++N V L+++P CS+
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232
Query: 525 DLIRFVSKKMTK 536
++R V+ + K
Sbjct: 233 KVVRTVTNETLK 244
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
E L+L+ + L F+ + KL L+L N + + +F +LT L L L +NQL +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
L +F+++ L L + GN + LPSGVF L KL+ N+N+ Q P F ++ L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
Q + +S ++ L+ +P G F L L T+ L
Sbjct: 158 QTLSLSTNQ--LQSVPHGAFDRLGKLQTITL 186
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%)
Query: 117 LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL 176
L F+G +L LNL N + L +GVF + +L L L +N +A + +F +LT L
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109
Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
L L NQL +L +F+ + L+ L ++ N + +P+G F L LQT ++N+ Q
Sbjct: 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 237 FPKDLFAEMKYLQVIKI 253
P F + LQ I +
Sbjct: 170 VPHGAFDRLGKLQTITL 186
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Query: 87 SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVF 146
+ + LS F GL + + L +N ++ L +F +L +L L N + L GVF
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF 103
Query: 147 QYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206
++ +L L LG N + + +F LT L+ L L+ NQL ++ F+ + NL++L +S
Sbjct: 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 207 GNNISILPSGVFSDLRKLQTFYANSNRF 234
N + +P G F L KLQT N+F
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 6/160 (3%)
Query: 201 RSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
+ +D G ++ +PSG+ +D KL S F + L + + Y++ L
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTEKLD---LQSTGLATLSDATFRGLTKLTWLNLDYNQ--L 71
Query: 261 KELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 320
+ L +G+F +L L T+ L + +A LP +F + T + + L G++ L SLPS +F
Sbjct: 72 QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRL 130
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
KL +L L N+L+ +P F+ L L TL+L NQL+++
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 55/253 (21%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
K L S+PS + D +KL +LQ L L + F L +L LNL NQL+ +++ V
Sbjct: 24 KSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
L+ L +L L+ NQL + L FD L+ L+ +
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLT----------------------------QLDKL 112
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV-- 482
L N++ SL +T LKEL L N IP ++N TL LS NQ+ V
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 483 -------------------DLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSN 523
D EI +Q E+S V + L+++P CS+
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKV-KDGTGQNLHESPDGVTCSD 231
Query: 524 YDLIRFVSKKMTK 536
++R V+ + K
Sbjct: 232 GKVVRTVTNETLK 244
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 149/334 (44%), Gaps = 57/334 (17%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
Q+E LNL I E+ + F Y +Q L +G N + Y+ P +F+N+ L +L L+ N L
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
+L R IF+N P L +L +S NN+ + F LQ +SNR
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----------- 178
Query: 247 YLQVIKISYHKDSLKELPSGLFANLP--LLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
H D L +PS AN+ LL+T+ + IA D NS N V+
Sbjct: 179 ---------HVD-LSLIPSLFHANVSYNLLSTLAI---PIAVEELDASHNSIN----VVR 221
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--S 362
G P + +L L+LQ N L + L ++L N+LE I
Sbjct: 222 G-------PVNV-----ELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHP 267
Query: 363 LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNL 421
V + L L +S N+L +NL + +L +DLSHN LL + Q Q L
Sbjct: 268 FVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQ------PQFDRL 320
Query: 422 ETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
E + L +N I +L +S+ +LK L L HN++
Sbjct: 321 ENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDW 351
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F H ++ + + N I L +F+ P L L L N ++ L G+F PKL L
Sbjct: 89 FAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISIL 213
+ +N++ ++ + F+ TSL+ L L N+L ++ ++ +P+L ++S N +S L
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL---IPSLFHANVSYNLLSTL 201
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 103 VKHILLSHNKEITGLHK-DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND 161
V+++ L NK LH K L L L GN + L +GVF + L+ L L N
Sbjct: 65 VRYLALGGNK----LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 162 VAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDL 221
+ + +F LT+L LNL HNQL +L + +F+ + NL LD+S N + LP GVF L
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 222 RKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
+L+ N+ + P +F + LQ I
Sbjct: 181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 146 FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205
QY+P ++ L LG N + D K LT+L L L NQL +L +F+ + NL+ L +
Sbjct: 59 IQYLPNVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPS 265
N + LP GVF L L N+ Q PK +F ++ L + +SY++ L+ LP
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ--LQSLPE 174
Query: 266 GLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 303
G+F L L + L ++ + +P +F T++ I L
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
+ L+ LP+G+F L L ++L E+ + LP +F TN+T + L H +L SLP +F
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL-AHNQLQSLPKGVF 153
Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
L +L+L N+L+ LPE +F+ L +L L L NQL+++ V L SL W
Sbjct: 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIW 211
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 5/159 (3%)
Query: 197 VPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256
+PN+R L + GN + + + +L L N+ Q P +F ++ L+ ++
Sbjct: 62 LPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLK--ELVLV 117
Query: 257 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 316
++ L+ LP G+F L L + L + + LP +F TN+T + L+ + +L SLP +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPEGV 176
Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
F +L L L +N+LK +P+ +F+ L L + L +N
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Query: 105 HILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAY 164
+++L+ N ++ L +F L+ L L N + L GVF + L L+L N +
Sbjct: 89 YLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
+ +F LT+L L+L +NQL +L +F+ + L+ L + N + +P GVF L L
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Query: 225 QTFYANSNRF 234
Q + + N +
Sbjct: 208 QYIWLHDNPW 217
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 135/348 (38%), Gaps = 103/348 (29%)
Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
Q+FP D FAE IK + K S+ + + L ++ +I S I + +
Sbjct: 11 QIFPDDAFAE-----TIKANLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQYL- 62
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
N+ + L G+K L + + ++ L L L N+L+ LP +F+ L L L L
Sbjct: 63 -PNVRYLALGGNK-LHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 355 NQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
NQL+++ V L+ L L+L+ NQL+ + FD L+
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT--------------------- 157
Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472
NL ++LSYN++ SL + +T LK+L L N +PD V ++LT
Sbjct: 158 -------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG----VFDRLT- 205
Query: 473 DLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532
S + L+DNP C C IR++S+
Sbjct: 206 ---------------------------------SLQYIWLHDNPWDCTCPG---IRYLSE 229
Query: 533 KMTKTVYQMLELVTDNLECFGNAGVGIN---SVRPENLTCDTKPCPAR 577
+ K ++GV N SV P++ C P R
Sbjct: 230 WINK-----------------HSGVVRNSAGSVAPDSAKCSGSGKPVR 260
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 23/305 (7%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
I L++D F P LE L L N ++ + G F + L+ L L SN + + +F
Sbjct: 43 RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102
Query: 173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
L++L L++ N+++ L +F ++ NL+SL++ N++ + FS L L+
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 233 RFQMFPKDLFAEMKYLQVIKIS---------YHKDSLKELPSGLFANLPLLNTVILGESS 283
P + + + L V+++ Y L L ++ P L+T+
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT----- 217
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
P+ L+ N+T++ +T H LT++P R L L L N + + ++
Sbjct: 218 ----PNCLY--GLNLTSLSIT-HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 344 LKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L L + L QL + + GL+ L L++S NQL + F + +L T+ L N
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Query: 402 LLTFD 406
L D
Sbjct: 331 PLACD 335
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 151/351 (43%), Gaps = 49/351 (13%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
T R+L+L N++ L + F + P+L L+++ N +S + G F++L L+T SNR
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
LK +P G+F L L + + E+ I L +F
Sbjct: 92 --------------------------LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
+ N+ ++ + G L + F L +L L++ L +P L L L L+
Sbjct: 126 DLYNLKSLEV-GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184
Query: 354 NNQLENIT--SLVGLSGLNSLDLS-WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY 410
+ + I S L L L++S W L+ + GL+ L ++ ++H LT
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLT----AV 239
Query: 411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL 470
Y ++ V L +NLSYN IS++ + + L+E+ L + + ++
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299
Query: 471 TLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNC 521
L++S NQ L TLE N ++ +IL+ NP+AC+C
Sbjct: 300 VLNVSGNQ-----LTTLEESVFHSVGNLET---------LILDSNPLACDC 336
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 150/334 (44%), Gaps = 57/334 (17%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
Q+E LNL I E+ + F Y +Q L +G N + Y+ P +F+N+ L +L L+ N L
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
+L R IF+N P L +L +S NN+ + F LQ +SNR
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----------- 184
Query: 247 YLQVIKISYHKDSLKELPSGLFANLP--LLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
H D L +PS AN+ LL+T+ + IA D NS N V+
Sbjct: 185 ---------HVD-LSLIPSLFHANVSYNLLSTLAI---PIAVEELDASHNSIN----VVR 227
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--S 362
G P + +L L+LQ N L L + L ++L N+LE I
Sbjct: 228 G-------PVNV-----ELTILKLQHNNLTDTAWLL--NYPGLVEVDLSYNELEKIMYHP 273
Query: 363 LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNL 421
V + L L +S N+L +NL + +L +DLSHN LL + Q + L
Sbjct: 274 FVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFD------RL 326
Query: 422 ETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
E + L +N I +L +S+ +LK L L HN++
Sbjct: 327 ENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDW 357
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 72 LNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESL 131
L I I+T AF+ + H ++ + + N I L +F+ P L L
Sbjct: 85 LQIEEIDTYAFAYA---------------HTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL 128
Query: 132 NLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR 191
L N ++ L G+F PKL L + +N++ ++ + F+ TSL+ L L N+L ++
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188
Query: 192 AIFNNVPNLRSLDISGNNISIL 213
++ +P+L ++S N +S L
Sbjct: 189 SL---IPSLFHANVSYNLLSTL 207
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 124/248 (50%), Gaps = 11/248 (4%)
Query: 209 NISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF 268
N+ +P G+ ++ R L + N+ Q+ + F +++L+++++S ++ ++ + G F
Sbjct: 54 NLREVPDGISTNTRLLNL---HENQIQIIKVNSFKHLRHLEILQLS--RNHIRTIEIGAF 108
Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
L LNT+ L ++ + +P+ F + + + L + + S+PS F L +L+L
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLDL 167
Query: 329 -QRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAF 387
+ +L Y+ E FE L L LNL L I +L L L+ LDLS N L I +F
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE 447
GL L + + + + E + + L+ V INL++N ++ L D + + L+
Sbjct: 228 QGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVE---INLAHNNLTLLPHDLFTPLHHLER 283
Query: 448 LDLRHNNF 455
+ L HN +
Sbjct: 284 IHLHHNPW 291
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 16/211 (7%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
++L+L N + + FK+L L IL L N + + FN + NL +L++ N ++
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
+P+G F L KL+ + +N + P F + L+ + + K L + G F L
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLS 185
Query: 273 LLNTVILGESSIAELPSDLFWNSTNITNIV------LTGHKKLTSLPSTLFRDCKKLVKL 326
L + L ++ E+P N+T ++ L+G+ L+++ F+ L KL
Sbjct: 186 NLRYLNLAMCNLREIP--------NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKL 236
Query: 327 ELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
+ +++++ + N F++L+ L +NL +N L
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 6/235 (2%)
Query: 98 DGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDL 157
DG+ +L H +I + + FK LE L L N I + G F + L L+L
Sbjct: 60 DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119
Query: 158 GSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG-NNISILPSG 216
N + + F L+ L+ L L +N + ++ FN +P+LR LD+ +S + G
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNT 276
F L L+ + P +++ ++ + L + G F L L
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIPN----LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235
Query: 277 VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
+ + +S I + + F N ++ I L H LT LP LF L ++ L N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINL-AHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 33/148 (22%)
Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQLE--NITSLVGLSGLNSLDLSWNQLEQINLIAF 387
R L+ +P+ + + + LNL NQ++ + S L L L LS N + I + AF
Sbjct: 52 RKNLREVPDGISTNTR---LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE 447
+GL++LNT++L FD NR++++ + ++ LKE
Sbjct: 109 NGLANLNTLEL------FD----------------------NRLTTIPNGAFVYLSKLKE 140
Query: 448 LDLRHNNFSFIPDQLDSIVSNKLTLDLS 475
L LR+N IP + + + LDL
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLG 168
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 169/362 (46%), Gaps = 38/362 (10%)
Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL------TS 175
F G L L+L N + E G FQ + KL L L + A ++P + + L TS
Sbjct: 167 FLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNN---AQLNPHLTEKLCWELSNTS 223
Query: 176 LRILNLDHNQLINLTRAIFNNVP--NLRSLDISGNNISILPSGVFS---DLRKLQTFYAN 230
++ L+L +NQL+ + + F+ + NL LD+S NN+ + +G FS LR L Y N
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 231 SNRFQMFPKDLFA--EMKYLQVIKISYHKDSLK-----ELPSGLFANLPLLNTVILGESS 283
R P+ + ++YL +K ++ K S+ + F L L + + +++
Sbjct: 284 IQRLS--PRSFYGLSNLRYLS-LKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNN 340
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC------KKLVKLELQRNKLKYLP 337
I S+ F ++ + L+ K TSL TL + L+ L L +N + +
Sbjct: 341 IPSTKSNTFTGLVSLKYLSLS--KTFTSL-QTLTNETFVSLAHSPLLTLNLTKNHISKIA 397
Query: 338 ENLFESLKELYTLNLKNNQLENITS---LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN 394
F L +L L+L N++E S GL + + LS+N+ Q++ +F + SL
Sbjct: 398 NGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQ 457
Query: 395 TVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
+ L + SP + NL ++LS N I+++ +D + + +L+ LD +HNN
Sbjct: 458 RLMLRR--VALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNN 515
Query: 455 FS 456
+
Sbjct: 516 LA 517
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 178/398 (44%), Gaps = 40/398 (10%)
Query: 111 NKEITGLHKDIFKGTP--QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPE 168
N ++ + F G L L+L N++ ++ +G F Y+P L+ L L N++ + P
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 169 IFKNLTSLRILNLDH---NQLINLTRA------IFNNVPNLRSLDISGNNISILPSGVFS 219
F L++LR L+L Q ++L F + L L++ NNI S F+
Sbjct: 291 SFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFT 350
Query: 220 DLRKLQ--TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTV 277
L L+ + Q + F + + ++ ++ K+ + ++ +G F+ L L +
Sbjct: 351 GLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRIL 410
Query: 278 ILGESSIAELPSDLFWNS-TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY- 335
LG + I + S W NI I L+ +K L L ++ F L +L L+R LK
Sbjct: 411 DLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYL-QLSTSSFALVPSLQRLMLRRVALKNV 469
Query: 336 -LPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIA------ 386
+ + F L+ L L+L NN + NI L GL L LD N L ++ A
Sbjct: 470 DISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPV 529
Query: 387 --FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS----LFDDWIS 440
GLS L+ ++L N L DE G K L++INL N ++ +FDD
Sbjct: 530 NFLKGLSHLHILNLESNGL--DEIPVGV--FKNLFELKSINLGLNNLNKLEPFIFDD--- 582
Query: 441 SMTSLKELDLRHNNFSFI-PDQLDSIVSNKLTLDLSFN 477
TSL+ L+L+ N + + D N +LD+ FN
Sbjct: 583 -QTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFN 619
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 158/372 (42%), Gaps = 42/372 (11%)
Query: 86 PSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGV 145
PSN+ VL+ L+HN ++ L F QL L+ NSI++L +
Sbjct: 24 PSNITVLN--------------LTHN-QLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 146 FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205
Q +P L+VL+L N+++ + + F T+L L+L N + + F N NL LD+
Sbjct: 69 CQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDL 128
Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPS 265
S N +S G L LQ N+ + + + K+ + LKE
Sbjct: 129 SHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSP 188
Query: 266 GLFANLPLLNTVILGESSI-AELPSDLFW--NSTNITNIVLTGHKKLTSLPSTLFRDCK- 321
G F + L ++L + + L L W ++T+I N+ L ++ L + ST F K
Sbjct: 189 GCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSEST-FSGLKW 247
Query: 322 -KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQ 378
L +L+L N L + F L L L+L+ N ++ ++ S GLS L L L
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAF 307
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+Q +A S N D S L + EY +N+ N I S +
Sbjct: 308 TKQSVSLA----SHPNIDDFSFQWLKYLEY---------------LNMDDNNIPSTKSNT 348
Query: 439 ISSMTSLKELDL 450
+ + SLK L L
Sbjct: 349 FTGLVSLKYLSL 360
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 31/255 (12%)
Query: 421 LETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIA 480
L ++ +N IS L + + LK L+L+HN S I DQ +N LDL N I
Sbjct: 51 LAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIH 110
Query: 481 IVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQ 540
+IK+ +P ++ + + + L+ N ++ + +++ +
Sbjct: 111 -------KIKS---NPFKNQKNLIK----LDLSHNGLSSTKLGTGVQLENLQELLLAKNK 156
Query: 541 MLELVTDNLECFGNAGVGINSVRPENLTCDT-KPCPARCYCNFSPYYSIMSVNCSSASLT 599
+L L ++ LE GN+ S+R +L+ + K C+ ++++ ++A L
Sbjct: 157 ILALRSEELEFLGNS-----SLRKLDLSSNPLKEFSPGCFQTIGKLFALL---LNNAQLN 208
Query: 600 -HMPDYLPVTYEDKKATSIQ-LILHNNSINHFLESPPESYKL--ITDLDLSYNNISHV-D 654
H+ + L + TSIQ L L NN + ES K +T LDLSYNN+ V +
Sbjct: 209 PHLTEKLCWELSN---TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGN 265
Query: 655 TMYPYLNHLELIDSE 669
+ YL L + E
Sbjct: 266 GSFSYLPSLRYLSLE 280
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY-GYSPLKQCVNLETIN 425
S + L+L+ NQL ++ F S L +D N ++ E + PL L+ +N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPL-----LKVLN 79
Query: 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLR 485
L +N +S + D T+L ELDL N+ I N + LDLS N ++ L
Sbjct: 80 LQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLG 139
Query: 486 T 486
T
Sbjct: 140 T 140
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 103/422 (24%), Positives = 189/422 (44%), Gaps = 67/422 (15%)
Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI-- 178
IFKG L+ ++I L+ G F+ D+ D++ P +F+ L + +
Sbjct: 218 IFKG--------LKNSTIQSLWLGTFE--------DMDDEDIS---PAVFEGLCEMSVES 258
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
+NL + N++ F+ L+ LD++ ++S LPSG+ L L+ ++N+F+
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFENLC 317
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI--AELPSDLFWNST 296
+ + L + I + L EL +G NL L + L I ++ + N +
Sbjct: 318 QISASNFPSLTHLSIKGNTKRL-ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL-PENLFESLKELYTLNLKNN 355
++ ++ L+ ++ L SL + F++C +L L+L +LK ++ F++L L LNL ++
Sbjct: 377 HLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Query: 356 QLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPL 415
L D+S QL FDGL +L ++L N Q S L
Sbjct: 436 LL---------------DISSEQL-------FDGLPALQHLNLQGNHFPKGNIQKTNS-L 472
Query: 416 KQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNK-LTLDL 474
+ LE + LS+ +SS+ +S+ + +DL HN + ++++ K + L+L
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT--SSSIEALSHLKGIYLNL 530
Query: 475 SFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKM 534
+ N I+I+ L I + + N L NP+ C CSN + + + M
Sbjct: 531 ASNHISIILPSLLPILSQQRTIN--------------LRQNPLDCTCSNIYFLEWYKENM 576
Query: 535 TK 536
K
Sbjct: 577 QK 578
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 161/383 (42%), Gaps = 67/383 (17%)
Query: 130 SLNLRGNSITELYSGVFQYV----------------------PKLQVLDLGS---NDVAY 164
SLNL GN I + G F +Q L LG+ D
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242
Query: 165 MDPEIFKNLTSLRI--LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
+ P +F+ L + + +NL + N++ F+ L+ LD++ ++S LPSG+ L
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG-LS 301
Query: 223 KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES 282
L+ ++N+F+ + + L + I + L EL +G NL L + L
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-ELGTGCLENLENLRELDLSHD 360
Query: 283 SI--AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL---- 336
I ++ + N +++ ++ L+ ++ L SL + F++C +L L+L +LK
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 337 ---------------------PENLFESLKELYTLNLKNNQ-----LENITSLVGLSGLN 370
E LF+ L L LNL+ N ++ SL L L
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNR 430
L LS+ L I+ AF L +N VDLSHN LT + S LK +NL+ N
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE-ALSHLKGIY----LNLASNH 534
Query: 431 ISSLFDDWISSMTSLKELDLRHN 453
IS + + ++ + ++LR N
Sbjct: 535 ISIILPSLLPILSQQRTINLRQN 557
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 92/402 (22%), Positives = 174/402 (43%), Gaps = 67/402 (16%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGN--------------SITELY---SGV--FQYVP--- 150
+I +H+D F+ +L++L L N ++ L+ +G+ ++P
Sbjct: 68 QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127
Query: 151 --KLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLR--SLDI 205
L+ L LGSN ++ + P+ F L++L+ +N + L++ +++ SL++
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186
Query: 206 SGNNISILPSGVF-SDLRKLQTFYANSNRFQMFPK------------------------D 240
+GN+I+ + G F S + + F N +F
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246
Query: 241 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300
+F + + V I+ K + S F L + L + ++ELPS L ST +
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLST-LKK 305
Query: 301 IVLTGHK--KLTSLPSTLFRDCKKLVKLELQRN-KLKYLPENLFESLKELYTLNLKNNQL 357
+VL+ +K L + ++ F L L ++ N K L E+L+ L L+L ++ +
Sbjct: 306 LVLSANKFENLCQISASNF---PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 358 ENIT----SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYS 413
E L LS L SL+LS+N+ + AF L +DL+ L + Q S
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ---S 419
Query: 414 PLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
P + L+ +NLS++ + + + +L+ L+L+ N+F
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 97/193 (50%), Gaps = 13/193 (6%)
Query: 97 FDGLHFVKHILLSHNK-EITGLHKDIFKGTPQLESLNLRGNSITE---LYSGVFQYVPKL 152
F LH +K + LSH+ +I+ + +F G P L+ LNL+GN + + Q + +L
Sbjct: 421 FQNLHLLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
++L L D++ +D F +L + ++L HN+L + + +++ + L+++ N+ISI
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISI 537
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
+ + L + +T N +++ +L+ K + K L++ L N P
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLDCTCSNIY----FLEWYKENMQK--LEDTEDTLCENPP 591
Query: 273 LLNTVILGESSIA 285
LL V L + +++
Sbjct: 592 LLRGVRLSDVTLS 604
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 103 VKHILLSHNKEITGLHK-DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND 161
V+++ L NK LH K L L L GN + L +GVF + L+ L L N
Sbjct: 65 VRYLALGGNK----LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 162 VAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDL 221
+ + +F LT+L L L HNQL +L + +F+ + NL LD+ N + LP GVF L
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 222 RKLQTFYANSNRFQMFPKDLFAEMKYL 248
+L+ N N+ + P +F + L
Sbjct: 181 TQLKQLSLNDNQLKSVPDGVFDRLTSL 207
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
+ L+ LP+G+F L L ++L E+ + LP +F TN+T + L H +L SLP +F
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLY-HNQLQSLPKGVF 153
Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
L +L+L N+L+ LPE +F+ L +L L+L +NQL+++ V L SL W
Sbjct: 154 DKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGV-FDRLTSLTHIW 211
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 5/159 (3%)
Query: 197 VPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256
+PN+R L + GN + + +L L N+ Q P +F ++ L+ ++
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK--ELVLV 117
Query: 257 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 316
++ L+ LP G+F L L + L + + LP +F TN+T + L + +L SLP +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGV 176
Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
F +L +L L N+LK +P+ +F+ L L + L NN
Sbjct: 177 FDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
P + L L GN + ++ + + L L L N + + +F LT+L+ L L NQ
Sbjct: 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
L +L +F+ + NL L + N + LP GVF L L ++N+ Q P+ +F ++
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
L+ ++S + + LK +P G+F L L + L
Sbjct: 181 TQLK--QLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 1/144 (0%)
Query: 105 HILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAY 164
+++L+ N ++ L +F L+ L L N + L GVF + L L L N +
Sbjct: 89 YLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS 147
Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
+ +F LT+L L+LD+NQL +L +F+ + L+ L ++ N + +P GVF L L
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSL 207
Query: 225 QTFYANSNRFQMFPKDLFAEMKYL 248
+ +N + D+ +++
Sbjct: 208 THIWLLNNPWDCACSDILYLSRWI 231
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 18/223 (8%)
Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
Q+FP D FAE IK + K S+ + + L ++ +I S I + +
Sbjct: 11 QIFPDDAFAE-----TIKANLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQYL- 62
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
N+ + L G+K L + + ++ L L L N+L+ LP +F+ L L L L
Sbjct: 63 -PNVRYLALGGNK-LHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 355 NQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
NQL+++ V L+ L L L NQL+ + FD L++L +DL +N L
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ----SLPE 174
Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
+ L+ ++L+ N++ S+ D +TSL + L +N +
Sbjct: 175 GVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 55/244 (22%)
Query: 350 LNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQ 409
L L N+L +I++L L+ L L L+ NQL+ + FD L+
Sbjct: 68 LALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLT------------------ 109
Query: 410 YGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNK 469
NL+ + L N++ SL D +T+L L L HN +P + ++N
Sbjct: 110 ----------NLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNL 159
Query: 470 LTLDLSFNQI-----AIVDLRTLEIKAAAQDPNEDSTM-------VARSANIVILNDNPI 517
LDL NQ+ + D T ++K + + N+ ++ + +I +LN NP
Sbjct: 160 TRLDLDNNQLQSLPEGVFDKLT-QLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLN-NPW 217
Query: 518 ACNCSNYDLIRFVSKKMTK---TVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPC 574
C CS+ I ++S+ +++ V+ L L D+ C G + P +
Sbjct: 218 DCACSD---ILYLSRWISQHPGLVFGYLNLDPDSARCSG-------TNTPVRAVTEASTS 267
Query: 575 PARC 578
P++C
Sbjct: 268 PSKC 271
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Query: 124 GTP-QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
G P Q L+L NS+ L +GVF + L L LG N + + +F LTSL LNL
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 183 HNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLF 242
NQL +L +F+ + L+ L ++ N + LP GVF L +L+ N+ + P +F
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
Query: 243 AEMKYLQVI 251
+ LQ I
Sbjct: 145 DRLTSLQYI 153
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 136 NSITELYSGVFQYVP-----KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
+ E YS VP + LDL +N + + +F LTSL L L N+L +L
Sbjct: 9 GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68
Query: 191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQV 250
+FN + +L L++S N + LP+GVF L +L+ N+N+ Q P +F ++ L+
Sbjct: 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128
Query: 251 IKISYHKDSLKELPSGLFANLPLLNTVIL 279
+++ +++ LK +P G+F L L + L
Sbjct: 129 LRL--YQNQLKSVPDGVFDRLTSLQYIWL 155
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 7/139 (5%)
Query: 238 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 297
P + A+ YL + +SLK LP+G+F L L + LG + + LP+ +F T+
Sbjct: 23 PTGIPAQTTYLDL-----ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 298 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
+T + L+ + +L SLP+ +F +L +L L N+L+ LP+ +F+ L +L L L NQL
Sbjct: 78 LTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 358 ENITSLVGLSGLNSLDLSW 376
+++ V L SL W
Sbjct: 137 KSVPDGV-FDRLTSLQYIW 154
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 6/151 (3%)
Query: 253 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 312
+ + +P+G+ A L+ L +S+ LP+ +F T++T + L G+K L SL
Sbjct: 12 VECYSQGRTSVPTGIPAQTTYLD---LETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSL 67
Query: 313 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLN 370
P+ +F L L L N+L+ LP +F+ L +L L L NQL+++ V L+ L
Sbjct: 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L L NQL+ + FD L+SL + L N
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%)
Query: 117 LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL 176
L +F L L L GN + L +GVF + L L+L +N + + +F LT L
Sbjct: 43 LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102
Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
+ L L+ NQL +L +F+ + L+ L + N + +P GVF L LQ + + N +
Sbjct: 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
L+L+ N L +L +F+ + +L L + GN + LP+GVF+ L L ++N+ Q P
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
+F ++ Q+ +++ + + L+ LP G+F L L + L ++ + +P +F T++
Sbjct: 93 NGVFDKLT--QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 299 TNIVL 303
I L
Sbjct: 151 QYIWL 155
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
FD L + + L NK + L +F L LNL N + L +GVF + +L+ L
Sbjct: 48 FDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLR 201
L +N + + +F LT L+ L L NQL ++ +F+ + +L+
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 30/137 (21%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQIN 383
L+L+ N LK LP +F+ L L L L N+L+++ + V L+ L L+LS NQL+ +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
FD L+ L+ + L+ N++ SL D +T
Sbjct: 93 NGVFDKLT----------------------------QLKELALNTNQLQSLPDGVFDKLT 124
Query: 444 SLKELDLRHNNFSFIPD 460
LK+L L N +PD
Sbjct: 125 QLKDLRLYQNQLKSVPD 141
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 21/165 (12%)
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
LDL N L+ + FD L+SL + L N L + +L +NLS N++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ----SLPNGVFNKLTSLTYLNLSTNQL 88
Query: 432 SSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKA 491
SL + +T LKEL L N +PD + ++ L L NQ+ V +
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 492 AAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTK 536
+ Q + L+DNP C C IR++S+ + K
Sbjct: 149 SLQ--------------YIWLHDNPWDCTCPG---IRYLSEWINK 176
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 166/384 (43%), Gaps = 51/384 (13%)
Query: 116 GLHKDIFKGTPQLES----LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA-YMDPEIF 170
GLH+ P+L + ++L NSI EL F + LQ L + + F
Sbjct: 21 GLHQ-----VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75
Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI--SILPSGVFSDLRKLQTFY 228
+ L+SL IL LD+NQ + L FN + NL L ++ N+ ++L F L L+
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135
Query: 229 ANSNRFQMF-PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
N + P F M+ V+ ++++K +K + N + +L SSI
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNK--VKSICEEDLLNFQGKHFTLLRLSSITLQ 193
Query: 288 PSDLFW----------NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE---------- 327
+ +W +T+IT + L+G+ S+ F D K++
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF-DAIAGTKIQSLILSNSYNM 252
Query: 328 ---LQRNKLKYLPENL-FESLKE--LYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQL 379
K P+N F+ L+ + T +L +++ + V + L L L+ N++
Sbjct: 253 GSSFGHTNFKD-PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Query: 380 EQINLIAFDGLSSLNTVDLSHNLL-TFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+I+ AF GL+ L ++LS N L + D + + LE ++LSYN I +L D
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF-----ENLDKLEVLDLSYNHIRALGDQS 366
Query: 439 ISSMTSLKELDLRHNNFSFIPDQL 462
+ +LKEL L N +PD +
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGI 390
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 97 FDGLHF--VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154
F GL VK LS +K I L K +F LE L L N I ++ F + L
Sbjct: 269 FKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327
Query: 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILP 214
L+L N + +D +F+NL L +L+L +N + L F +PNL+ L + N + +P
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Query: 215 SGVFSDLRKLQTFYANSN 232
G+F L LQ + ++N
Sbjct: 388 DGIFDRLTSLQKIWLHTN 405
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 122 FKG--TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
FKG +++ +L + I L VF + L+ L L N++ +D F LT L L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
NL N L ++ +F N+ L LD+S N+I L F L L+ ++N+ + P
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Query: 240 DLFAEMKYLQVI 251
+F + LQ I
Sbjct: 389 GIFDRLTSLQKI 400
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 148/352 (42%), Gaps = 31/352 (8%)
Query: 117 LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN--DVAYMDPEIFKNLT 174
+ + F+G L L L N +L +G F + L+VL L D A + FK LT
Sbjct: 70 IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129
Query: 175 SLRILNLDHNQLINLTRA-IFNNVPNLRSLDISGNNI-SILPSGV-------FSDLRKLQ 225
SL +L L N + + A F N+ LD++ N + SI + F+ LR
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189
Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
+ N + + + K + + + KE + F + I G
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD------AIAG----T 239
Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR--DCKKLVKLELQRNKLKYLPENLFES 343
++ S + NS N+ + GH + F+ + + +L ++K+ L +++F
Sbjct: 240 KIQSLILSNSYNMGSSF--GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297
Query: 344 LKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
+L L L N++ I + GL+ L L+LS N L I+ F+ L L +DLS+N
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 402 LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN 453
+ G NL+ + L N++ S+ D +TSL+++ L N
Sbjct: 358 HIR----ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 140/329 (42%), Gaps = 36/329 (10%)
Query: 92 LSPPYFDGLHFVKHILLSH-NKEITGLHKDIFKGTPQLESLNLRGNSITELY-SGVFQYV 149
L F+GL ++ + L+ N + L + FK LE L LR N+I ++ + F +
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153
Query: 150 PKLQVLDLGSNDVAYMDPEIF-----KNLTSLRILNL---DHNQLINLTRAIFNNVPN-- 199
+ VLDL N V + E K+ T LR+ ++ D N+ N N
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213
Query: 200 LRSLDISGNNISILPSGVFSDL---RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256
+ +LD+SGN + F D K+Q+ SN + M S+
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL-SNSYNMGS---------------SFG 257
Query: 257 KDSLKELPSGLFANLPL--LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 314
+ K+ + F L + T L +S I L +F + T++ + L ++ +
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL-AQNEINKIDD 316
Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSL 372
F L+KL L +N L + +FE+L +L L+L N + + S +GL L L
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 373 DLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L NQL+ + FD L+SL + L N
Sbjct: 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 157/346 (45%), Gaps = 48/346 (13%)
Query: 61 PDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKD 120
PD+N F+ L +++ L S+ V L+ F+ L +K + L++NK I + +
Sbjct: 255 PDQN---TFAGLARSSVRHLDLSHG--FVFSLNSRVFETLKDLKVLNLAYNK-INKIADE 308
Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN 180
F G L+ LNL N + ELYS F +PK+ +DL N +A + + FK L L+ L+
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368
Query: 181 LDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQMFPK 239
L N L + + +P++ + +SGN + LP + ++L L + NR +
Sbjct: 369 LRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHL-----SENRLENLDI 418
Query: 240 DLF-AEMKYLQVIKIS---YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 295
F + +LQ++ ++ + S + PS P L + LGE+ + L W
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPS----ENPSLEQLFLGENML-----QLAWE- 468
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
T L +F L L L N L LP +F L L L+L +N
Sbjct: 469 --------------TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514
Query: 356 QLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
+L ++ + L LD+S NQL N D SL+ +D++HN
Sbjct: 515 RLTVLSHNDLPANLEILDISRNQLLAPNP---DVFVSLSVLDITHN 557
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 155/349 (44%), Gaps = 44/349 (12%)
Query: 145 VFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN--LTRAIFNNVPNLRS 202
F+ +P L++LDLGS+ + ++ P+ F+ L L L L L + L F N+ L
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 203 LDISGNNISIL---PSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS 259
LD+S N I L PS F L L++ +SN+ + + E++ LQ +S+ +
Sbjct: 128 LDLSKNQIRSLYLHPS--FGKLNSLKSIDFSSNQIFLVCEH---ELEPLQGKTLSFFSLA 182
Query: 260 LKELPSGL----------FANLPLLNTVILGESSIAELPSDLFWNS---TNITNIVLTGH 306
L S + F N+ L + G ++ + F N+ + +++L H
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN-FSNAISKSQAFSLILAHH 241
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
+D + L R+ +++L L + +L + E L
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHL------DLSHGFVFSLNSRVFET------L 289
Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
L L+L++N++ +I AF GL +L ++LS+NLL + Y + L + + I+L
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPK---VAYIDL 345
Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFS---FIPDQLDSIVS-NKLT 471
N I+ + D + L+ LDLR N + FIP D +S NKL
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV 394
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 39/249 (15%)
Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL 241
D N L R+ ++R LD+S + L S VF L+ L+ N+ +
Sbjct: 256 DQNTFAGLARS------SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309
Query: 242 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF-----WNST 296
F + LQV+ +SY + L EL S F LP + + L ++ IA + F +
Sbjct: 310 FYGLDNLQVLNLSY--NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367
Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLV---KLELQRNKLKYLPENLFESLKELY----- 348
++ + LT + S+P +F KLV K+ L N L +L EN E+L LY
Sbjct: 368 DLRDNALTTIHFIPSIPD-IFLSGNKLVTLPKINLTAN-LIHLSENRLENLDILYFLLRV 425
Query: 349 ----TLNLKNNQLENIT---------SLVGLS-GLNSLDLSWNQLEQINLIAFDGLSSLN 394
L L N+ + + SL L G N L L+W ++ F+GLS L
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE--TELCWDVFEGLSHLQ 483
Query: 395 TVDLSHNLL 403
+ L+HN L
Sbjct: 484 VLYLNHNYL 492
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 358 ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL--TFDEYQYGYSPL 415
+N + + S + LDLS + +N F+ L L ++L++N + DE YG
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-- 314
Query: 416 KQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS 475
NL+ +NLSYN + L+ + + +DL+ N+ + I DQ + TLDL
Sbjct: 315 ----NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 476 FNQIAIV 482
N + +
Sbjct: 371 DNALTTI 377
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 80/157 (50%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F GL ++ + LS N ++ + F+G L +L+L + EL G+F+ + LQ L
Sbjct: 75 FTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLY 134
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
L N++ + F++L +L L L N++ ++ F + +L L + N+++ +
Sbjct: 135 LQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
F DL +L T Y +N M P ++ ++ LQ +++
Sbjct: 195 AFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRL 231
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 17/221 (7%)
Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWN-QLEQ 381
++ L N++ Y+P F+S + L L L +N L I + GL+ L LDLS N QL
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 382 INLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISS 441
++ F GL L+T+ L L + G + L+ + L N + +L D+
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGLQ----ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRD 150
Query: 442 MTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD---------LRTLEIKAA 492
+ +L L L N +P+ + + L L N +A V L TL + A
Sbjct: 151 LGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFAN 210
Query: 493 AQDPNEDSTMVA-RSANIVILNDNPIACNCSNYDLIRFVSK 532
+V RS + LNDNP C+C L ++ K
Sbjct: 211 NLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQK 251
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 2/156 (1%)
Query: 205 ISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP 264
+ GN IS +P+ F R L + +SN F + L+ + +S L+ +
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLS-DNAQLRVVD 96
Query: 265 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 324
F L L+T+ L + EL LF + + L L +LP FRD L
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NNLQALPDNTFRDLGNLT 155
Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
L L N++ +PE+ F L L L L N + +
Sbjct: 156 HLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARV 191
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 78/157 (49%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F GL ++ + LS N ++ + F G +L +L+L + EL G+F+ + LQ L
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 134
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
L N + + + F++L +L L L N++ ++ F + +L L + N ++ +
Sbjct: 135 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
F DL +L T Y +N P + A ++ LQ +++
Sbjct: 195 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 231
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 115/283 (40%), Gaps = 48/283 (16%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN-NIS 211
Q + L N ++++ F+ +L IL L N L + A F + L LD+S N +
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
+ F L +L T + + + L+EL GLF L
Sbjct: 94 SVDPATFHGLGRLHTLHLD--------------------------RCGLQELGPGLFRGL 127
Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
L + L ++++ LP D F + N+T++ L G +++S+P FR L +L L +N
Sbjct: 128 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN 186
Query: 332 KLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLS-------------W 376
++ ++ + F L L TL L N L + +L L L L L+ W
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 246
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV 419
L++ F G SS L L D + + L+ C
Sbjct: 247 AWLQK-----FRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 284
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 27/231 (11%)
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN-QLENI--TSLV 364
+++ +P+ FR C+ L L L N L + F L L L+L +N QL ++ +
Sbjct: 42 RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 101
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTF---DEYQYGYSPLKQCVNL 421
GL L++L L L+++ F GL++L + L N L D + + NL
Sbjct: 102 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-------RDLGNL 154
Query: 422 ETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAI 481
+ L NRISS+ + + SL L L N + + + +TL L N ++
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Query: 482 VDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532
+ P E + R+ + LNDNP C+C L ++ K
Sbjct: 215 L-------------PTE-ALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 251
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CP C C P ++ +C L +P +P A S ++ LH N I+H +
Sbjct: 1 CPGACVCYNEPK---VTTSCPQQGLQAVPVGIP-------AASQRIFLHGNRISHVPAAS 50
Query: 634 PESYKLITDLDLSYNNISHVD----TMYPYLNHLELIDSEKI 671
+ + +T L L N ++ +D T L L+L D+ ++
Sbjct: 51 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 92
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 78/157 (49%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F GL ++ + LS N ++ + F G +L +L+L + EL G+F+ + LQ L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
L N + + + F++L +L L L N++ ++ F + +L L + N ++ +
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
F DL +L T Y +N P + A ++ LQ +++
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 115/283 (40%), Gaps = 48/283 (16%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN-NIS 211
Q + L N ++++ F+ +L IL L N L + A F + L LD+S N +
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
+ F L +L T + + + L+EL GLF L
Sbjct: 95 SVDPATFHGLGRLHTLHLD--------------------------RCGLQELGPGLFRGL 128
Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
L + L ++++ LP D F + N+T++ L G +++S+P FR L +L L +N
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN 187
Query: 332 KLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLS-------------W 376
++ ++ + F L L TL L N L + +L L L L L+ W
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV 419
L++ F G SS L L D + + L+ C
Sbjct: 248 AWLQK-----FRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 28/239 (11%)
Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN-QLE 358
I L G +++ +P+ FR C+ L L L N L + F L L L+L +N QL
Sbjct: 36 RIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 359 NI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTF---DEYQYGYS 413
++ + GL L++L L L+++ F GL++L + L N L D +
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF----- 149
Query: 414 PLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLD 473
+ NL + L NRISS+ + + SL L L N + + + +TL
Sbjct: 150 --RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 474 LSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532
L N ++ + P E + R+ + LNDNP C+C L ++ K
Sbjct: 208 LFANNLSAL-------------PTE-ALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLES 632
PCP C C P ++ +C L +P +P A S ++ LH N I+H +
Sbjct: 1 PCPGACVCYNEPK---VTTSCPQQGLQAVPVGIP-------AASQRIFLHGNRISHVPAA 50
Query: 633 PPESYKLITDLDLSYNNISHVD----TMYPYLNHLELIDSEKI 671
+ + +T L L N ++ +D T L L+L D+ ++
Sbjct: 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
++ L L L+L HNQL +L + +P L LD+S N ++ LP G L +LQ
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
Y N + P L L+ K+S + L ELP+GL L L+T++L E+S+ +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
P F
Sbjct: 188 PKGFF 192
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 113 EITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK 171
E+T L D GT P L +L+L N + L + Q +P L VLD+ N + + +
Sbjct: 66 ELTKLQVD---GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L+ L L N+L L + P L L ++ N ++ LP+G+ + L L T
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 232 NRFQMFPKDLFA 243
N PK F
Sbjct: 182 NSLYTIPKGFFG 193
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
+LTSLP R +L +L L+ N+LK LP L +L L+L NNQL + +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
L GL L++L L N L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
+L +L L R +L L + +L L TL+L +NQL+++ L+G L L LD+S+N+L
Sbjct: 56 RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ L A GL L + L N L T +P LE ++L+ N+++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNQLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
++ + +L L L+ N+ IP S+ L + + L + QD E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
+ + + ++ + N + C N D
Sbjct: 226 NVYVWKQGVDVKAVTSNVASVQCDNSD 252
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 9/179 (5%)
Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
+ P++ K+ T IL+L N L + A L L++ ++ L V L L
Sbjct: 25 LPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVL 79
Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI 284
T + N+ Q P L + L V+ +S+++ L LP G L L + L + +
Sbjct: 80 GTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNEL 136
Query: 285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
LP L + + + L + +LT LP+ L + L L LQ N L +P+ F S
Sbjct: 137 KTLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
+T L +G +L+ L L+GN + L G+ PKL+ L L +N + + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +L L L N L + + F +
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
++ L L L+L HNQL +L + +P L LD+S N ++ LP G L +LQ
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
Y N + P L L+ K+S + L ELP+GL L L+T++L E+S+ +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
P F
Sbjct: 188 PKGFF 192
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 113 EITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK 171
E+T L D GT P L +L+L N + L + Q +P L VLD+ N + + +
Sbjct: 66 ELTKLQVD---GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L+ L L N+L L + P L L ++ N ++ LP+G+ + L L T
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 232 NRFQMFPKDLFA 243
N PK F
Sbjct: 182 NSLYTIPKGFFG 193
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
+LTSLP R +L +L L+ N+LK LP L +L L+L NNQL + +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
L GL L++L L N L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
+L +L L R +L L + +L L TL+L +NQL+++ L+G L L LD+S+N+L
Sbjct: 56 RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ L A GL L + L N L T +P LE ++L+ N+++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNQLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
++ + +L L L+ N+ IP S+ L + + L + QD E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
+ + + ++ + N + C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 9/179 (5%)
Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
+ P++ K+ T IL+L N L + A L L++ ++ L V L L
Sbjct: 25 LPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVL 79
Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI 284
T + N+ Q P L + L V+ +S+++ L LP G L L + L + +
Sbjct: 80 GTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNEL 136
Query: 285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
LP L + + + L + +LT LP+ L + L L LQ N L +P+ F S
Sbjct: 137 KTLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
+T L +G +L+ L L+GN + L G+ PKL+ L L +N + + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +L L L N L + + F +
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
++ L L L+L HNQL +L + +P L LD+S N ++ LP G L +LQ
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
Y N + P L L+ K+S ++L ELP+GL L L+T++L E+S+ +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
P F
Sbjct: 188 PKGFF 192
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 113 EITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK 171
E+T L D GT P L +L+L N + L + Q +P L VLD+ N + + +
Sbjct: 66 ELTKLQVD---GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L+ L L N+L L + P L L ++ NN++ LP+G+ + L L T
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 232 NRFQMFPKDLFA 243
N PK F
Sbjct: 182 NSLYTIPKGFFG 193
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L + +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
L GL L++L L N L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
+L +L L R +L L + +L L TL+L +NQL+++ L+G L L LD+S+N+L
Sbjct: 56 RLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ L A GL L + L N L T +P LE ++L+ N ++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
++ + +L L L+ N+ IP S+ L + + L + QD E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
+ + + ++ + N + C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
+T L +G +L+ L L+GN + L G+ PKL+ L L +N++ + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +L L L N L + + F +
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
++ L L L+L HNQL +L + +P L LD+S N ++ LP G L +LQ
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
Y N + P L L+ K+S ++L ELP+GL L L+T++L E+S+ +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
P F
Sbjct: 188 PKGFF 192
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 113 EITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK 171
E+T L D GT P L +L+L N + L + Q +P L VLD+ N + + +
Sbjct: 66 ELTKLQVD---GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L+ L L N+L L + P L L ++ NN++ LP+G+ + L L T
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 232 NRFQMFPKDLFA 243
N PK F
Sbjct: 182 NSLYTIPKGFFG 193
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L + +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
L GL L++L L N L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
+L +L L R +L L + +L L TL+L +NQL+++ L+G L L LD+S+N+L
Sbjct: 56 RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ L A GL L + L N L T +P LE ++L+ N ++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
++ + +L L L+ N+ IP S+ L + + L + QD E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
+ + + ++ + N + C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
+T L +G +L+ L L+GN + L G+ PKL+ L L +N++ + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +L L L N L + + F +
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
++ L L L+L HNQL +L + +P L LD+S N ++ LP G L +LQ
Sbjct: 72 QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 130
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
Y N + P L L+ K+S ++L ELP+GL L L+T++L E+S+ +
Sbjct: 131 YLKGNELKTLPPGLLTPTPKLE--KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
Query: 288 PSDLF 292
P F
Sbjct: 189 PKGFF 193
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 113 EITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK 171
E+T L D GT P L +L+L N + L + Q +P L VLD+ N + + +
Sbjct: 67 ELTKLQVD---GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR 122
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L+ L L N+L L + P L L ++ NN++ LP+G+ + L L T
Sbjct: 123 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 182
Query: 232 NRFQMFPKDLFA 243
N PK F
Sbjct: 183 NSLYTIPKGFFG 194
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 53 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 108
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L + +
Sbjct: 109 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 168
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
L GL L++L L N L I
Sbjct: 169 LNGLENLDTLLLQENSLYTI 188
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
+L +L L R +L L + +L L TL+L +NQL+++ L+G L L LD+S+N+L
Sbjct: 57 RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 113
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ L A GL L + L N L T +P LE ++L+ N ++ L
Sbjct: 114 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGL 168
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
++ + +L L L+ N+ IP S+ L + + L + QD E
Sbjct: 169 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 226
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
+ + + ++ + N + C N D
Sbjct: 227 NVYVWKQGVDVKAMTSNVASVQCDNSD 253
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
+T L +G +L+ L L+GN + L G+ PKL+ L L +N++ + +
Sbjct: 112 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 171
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +L L L N L + + F +
Sbjct: 172 LENLDTLLLQENSLYTIPKGFFGS 195
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
++ L L L+L HNQL +L + +P L LD+S N ++ LP G L +LQ
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
Y N + P L L+ K+S + L ELP+GL L L+T++L E+S+ +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
P F
Sbjct: 188 PKGFF 192
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 113 EITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK 171
E+T L D GT P L +L+L N + L + Q +P L VLD+ N + + +
Sbjct: 66 ELTKLQVD---GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L+ L L N+L L + P L L ++ N ++ LP+G+ + L L T
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 232 NRFQMFPKDLFA 243
N PK F
Sbjct: 182 NSLYTIPKGFFG 193
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
+LTSLP R +L +L L+ N+LK LP L +L L+L NNQL + +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
L GL L++L L N L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
+L +L L R +L L + +L L TL+L +NQL+++ L+G L L LD+S+N+L
Sbjct: 56 RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ L A GL L + L N L T +P LE ++L+ N+++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNQLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
++ + +L L L+ N+ IP S+ L + + L + QD E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
+ + + ++ + N + C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
+T L +G +L+ L L+GN + L G+ PKL+ L L +N + + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +L L L N L + + F +
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGS 194
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 9/179 (5%)
Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
+ P++ K+ T IL+L N L + A L L++ ++ L V L L
Sbjct: 25 LPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVL 79
Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI 284
T + N+ Q P L + L V+ +S+++ L LP G L L + L + +
Sbjct: 80 GTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNEL 136
Query: 285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
LP L + + + L + +LT LP+ L + L L LQ N L +P+ F S
Sbjct: 137 KTLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
++ L L L+L HNQL +L + +P L LD+S N ++ LP G L +LQ
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
Y N + P L L+ K+S + L ELP+GL L L+T++L E+S+ +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
P F
Sbjct: 188 PKGFF 192
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 113 EITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK 171
E+T L D GT P L +L+L N + L + Q +P L VLD+ N + + +
Sbjct: 66 ELTKLQVD---GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L+ L L N+L L + P L L ++ N+++ LP+G+ + L L T
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQE 181
Query: 232 NRFQMFPKDLFA 243
N PK F
Sbjct: 182 NSLYTIPKGFFG 193
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L + +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
L GL L++L L N L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
+L +L L R +L L + +L L TL+L +NQL+++ L+G L L LD+S+N+L
Sbjct: 56 RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ L A GL L + L N L T +P LE ++L+ N ++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNDLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
++ + +L L L+ N+ IP S+ L + + L + QD E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
+ + + ++ + N + C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
+T L +G +L+ L L+GN + L G+ PKL+ L L +ND+ + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNG 170
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +L L L N L + + F +
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
++ L L L+L HNQL +L + +P L LD+S N ++ LP G L +LQ
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
Y N + P L L+ K+S + L ELP+GL L L+T++L E+S+ +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
P F
Sbjct: 188 PKGFF 192
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 113 EITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK 171
E+T L D GT P L +L+L N + L + Q +P L VLD+ N + + +
Sbjct: 66 ELTKLQVD---GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L+ L L N+L L + P L L ++ N ++ LP+G+ + L L T
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 232 NRFQMFPKDLFA 243
N PK F
Sbjct: 182 NSLYTIPKGFFG 193
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
+LTSLP R +L +L L+ N+LK LP L +L L+L NNQL + +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
L GL L++L L N L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
+L +L L R +L L + +L L TL+L +NQL+++ L+G L L LD+S+N+L
Sbjct: 56 RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ L A GL L + L N L T +P LE ++L+ N+++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNQLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
++ + +L L L+ N+ IP S+ L + + L + QD E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
+ + + ++ + N + C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
+T L +G +L+ L L+GN + L G+ PKL+ L L +N + + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +L L L N L + + F +
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGS 194
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 9/179 (5%)
Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
+ P++ K+ T IL+L N L + A L L++ ++ L V L L
Sbjct: 25 LPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVL 79
Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI 284
T + N+ Q P L + L V+ +S+++ L LP G L L + L + +
Sbjct: 80 GTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNEL 136
Query: 285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
LP L + + + L + +LT LP+ L + L L LQ N L +P+ F S
Sbjct: 137 KTLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
++ L L L+L HNQL +L + +P L LD+S N ++ LP G L +LQ
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
Y N + P L L+ K+S ++L ELP+GL L L+T++L E+S+ +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
P F
Sbjct: 188 PKGFF 192
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 113 EITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK 171
E+T L D GT P L +L+L N + L + Q +P L VLD+ N + + +
Sbjct: 66 ELTKLQVD---GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L+ L L N+L L + P L L ++ NN++ LP+G+ + L L T
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 232 NRFQMFPKDLFA 243
N PK F
Sbjct: 182 NSLYTIPKGFFG 193
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L + +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
L GL L++L L N L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
+L +L L R +L L + +L L TL+L +NQL+++ L+G L L LD+S+N+L
Sbjct: 56 RLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ L A GL L + L N L T +P LE ++L+ N ++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
++ + +L L L+ N+ IP S+ L + + L + QD E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
+ + + ++ + N + C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
+T L +G +L+ L L+GN + L G+ PKL+ L L +N++ + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +L L L N L + + F +
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
++ L L L+L HNQL +L + +P L LD+S N ++ LP G L +LQ
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
Y N + P L L+ K+S ++L ELP+GL L L+T++L E+S+ +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
P F
Sbjct: 188 PKGFF 192
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 113 EITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK 171
E+T L D GT P L +L+L N + L + Q +P L VLD+ N + + +
Sbjct: 66 ELTKLQVD---GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L+ L L N+L L + P L L ++ NN++ LP+G+ + L L T
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 232 NRFQMFPKDLFA 243
N PK F
Sbjct: 182 NSLYTIPKGFFG 193
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L + +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
L GL L++L L N L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
+L +L L R +L L + +L L TL+L +NQL+++ L+G L L LD+S+N+L
Sbjct: 56 RLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ L A GL L + L N L T +P LE ++L+ N ++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
++ + +L L L+ N+ IP S+ L + + L + QD E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
+ + + ++ + N + C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
+T L +G +L+ L L+GN + L G+ PKL+ L L +N++ + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +L L L N L + + F +
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 118 HKDIFKGTPQ-LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL 176
H + G P + L L N IT+L GVF + L+ L LGSN + + +F +LT L
Sbjct: 31 HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90
Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
+L+L NQL L A+F+ + +L+ L + N ++ LP G+ L L + N+ +
Sbjct: 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKS 149
Query: 237 FPKDLFAEMKYL 248
P F + L
Sbjct: 150 IPHGAFDRLSSL 161
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 1/144 (0%)
Query: 99 GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG 158
G+ IL H+ +IT L +F L+ L L N + L GVF + +L VLDLG
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 159 SNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVF 218
+N + + +F L L+ L + N+L L R I + +L L + N + +P G F
Sbjct: 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAF 155
Query: 219 SDLRKLQTFYANSNRFQMFPKDLF 242
L L Y N + +D+
Sbjct: 156 DRLSSLTHAYLFGNPWDCECRDIM 179
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
T+ +IL L NQ+ L +F+++ NL+ L + N + LP GVF L +L +N+
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
+ P +F + +L+ + + +K L ELP G+ L L + L ++ + +P F
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNK--LTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 294 NSTNITNIVLTG 305
+++T+ L G
Sbjct: 157 RLSSLTHAYLFG 168
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 322
+P+G+ N +L L ++ I +L +F + N+ + L G +L +LP +F +
Sbjct: 34 VPAGIPTNAQIL---YLHDNQITKLEPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQ 89
Query: 323 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSWNQLEQ 381
L L+L N+L LP +F+ L L L + N+L + + L+ L L L NQL+
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149
Query: 382 INLIAFDGLSSL 393
I AFD LSSL
Sbjct: 150 IPHGAFDRLSSL 161
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 202 SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK 261
++D + +P+G+ ++ Q Y + N+ +F + L+ + + + L
Sbjct: 23 TVDCRSKRHASVPAGIPTNA---QILYLHDNQITKLEPGVFDSLINLKELYLG--SNQLG 77
Query: 262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 321
LP G+F +L L + LG + + LPS +F ++ + + + KLT LP + R
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIER-LT 135
Query: 322 KLVKLELQRNKLKYLPENLFESLKEL 347
L L L +N+LK +P F+ L L
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQIN 383
++ + + +P + + + LY L +NQ+ + V L L L L NQL +
Sbjct: 24 VDCRSKRHASVPAGIPTNAQILY---LHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80
Query: 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
+ FD L+ L +DL N LT + + V+L+ + + N+++ L I +T
Sbjct: 81 VGVFDSLTQLTVLDLGTNQLTV----LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLT 135
Query: 444 SLKELDLRHNNFSFIP----DQLDSI 465
L L L N IP D+L S+
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSL 161
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 31/197 (15%)
Query: 39 YDRLPEQ-NLGPFNAVTFTFCPLPDENFI-SLFSKLNITTINTLAFSNSPSNVGV-LSPP 95
Y +LP++ +G + V C LP I S+ L I + TL F + N+G+ ++
Sbjct: 60 YQQLPKKLRIGEVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESD--NLGMNITRQ 117
Query: 96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
+ D LH +K + + +T + ++ L L LR N I E+ S +F + L+ +
Sbjct: 118 HLDRLHGLKRFRFT-TRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESI 175
Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
+ GSN +L + R IF +P L+ L+++ N + +P
Sbjct: 176 EFGSN------------------------KLRQMPRGIFGKMPKLKQLNLASNQLKSVPD 211
Query: 216 GVFSDLRKLQTFYANSN 232
G+F L LQ + ++N
Sbjct: 212 GIFDRLTSLQKIWLHTN 228
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
+N+TR + + L+ + ++ +P+ + +D+R L +N +M P LF +++
Sbjct: 112 MNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEM-PSHLFDDLE 170
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 303
L+ I+ +K L+++P G+F +P L + L + + +P +F T++ I L
Sbjct: 171 NLESIEFGSNK--LRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWL 225
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L+ +L ++ + ++ NL L++ N I +PS +F DL L++ S
Sbjct: 121 RLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGS 179
Query: 232 NRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
N+ + P+ +F +M L+ + ++ + LK +P G+F L L + L
Sbjct: 180 NKLRQMPRGIFGKMPKLKQLNLA--SNQLKSVPDGIFDRLTSLQKIWL 225
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
+ +P++L + N++++ L + + +PS LF D + L +E NKL+ +P +F
Sbjct: 135 LTHIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGK 192
Query: 344 LKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
+ +L LNL +NQL+++ + L SL W
Sbjct: 193 MPKLKQLNLASNQLKSVPDGI-FDRLTSLQKIW 224
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 146 FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205
+Q +PK L +G D M + T + + LD+ +++ T IF + D
Sbjct: 60 YQQLPK--KLRIGEVDRVQMRRCMLPGHTPIASI-LDYLGIVSPTTLIFES-------DN 109
Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPS 265
G NI+ L L+ F + R P +L +M+ L +++ + +++E+PS
Sbjct: 110 LGMNIT---RQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLEL---RANIEEMPS 163
Query: 266 GLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 325
LF +L L ++ G + KL +P +F KL +
Sbjct: 164 HLFDDLENLESIEFGSN-------------------------KLRQMPRGIFGKMPKLKQ 198
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNN 355
L L N+LK +P+ +F+ L L + L N
Sbjct: 199 LNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 29/134 (21%)
Query: 323 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQI 382
L + +L ++P NL ++ L L L+ N +E++
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-----------------------IEEM 161
Query: 383 NLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISS 441
FD L +L +++ N L +G P L+ +NL+ N++ S+ D
Sbjct: 162 PSHLFDDLENLESIEFGSNKLRQMPRGIFGKMP-----KLKQLNLASNQLKSVPDGIFDR 216
Query: 442 MTSLKELDLRHNNF 455
+TSL+++ L N +
Sbjct: 217 LTSLQKIWLHTNPW 230
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
L L+ N+L +L +F+ + L L +S N I LP GVF L KL Y + N+ Q P
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
+F K Q+ +++ + LK +P G+F L L + L
Sbjct: 93 NGVFD--KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%)
Query: 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
L L N + L GVF + +L L L N + + +F LT L IL L N+L +L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
+F+ + L+ L + N + +P G+F L LQ + ++N +
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILP 214
L+L SN + + +F LT L L+L NQ+ +L +F+ + L L + N + LP
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 215 SGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
+GVF L +L+ ++N+ + P +F + LQ I
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--G 365
KL SLP +F +L KL L +N+++ LP+ +F+ L +L L L N+L+++ + V
Sbjct: 39 KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L+ L L L NQL+ + FD L+SL + L N
Sbjct: 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 250 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 309
++ + L+ LP G+F L L + L ++ I LP +F T +T I+ KL
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT-ILYLHENKL 88
Query: 310 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
SLP+ +F +L +L L N+LK +P+ +F+ L L + L N
Sbjct: 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
++ L +F QL L+L N I L GVF + KL +L L N + + +F
Sbjct: 39 KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98
Query: 173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSL 203
LT L+ L LD NQL ++ IF+ + +L+ +
Sbjct: 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
K LTS+P+ + +LEL+ NKL+ LP +F+ L +L L+L NQ++++ V
Sbjct: 17 KGLTSVPTGIPSS---ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
L+ L L L N+L+ + FD L+ L + L N L
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 10/227 (4%)
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
P +LDL +ND++ + + FK L L L L +N++ + F+ + L+ L IS N+
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA 269
+ +P + S L +L+ + NR + PK +F+ ++ + I++ + G F
Sbjct: 114 LVEIPPNLPSSLVELRI---HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329
L LN + + E+ + +P DL N + H K+ ++ KL +L L
Sbjct: 171 GLK-LNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225
Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
N+++ + L L L+L NN+L + + GL L L + +
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA--GLPDLKLLQVVY 270
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 34/222 (15%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
N +I+ L KD FKG L +L L N I++++ F + KLQ L + N + + P +
Sbjct: 62 QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL 121
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI--SILPSGVFSDLRKLQTF 227
+L LRI + N++ + + +F+ + N+ +++ GN + S G F L KL
Sbjct: 122 PSSLVELRIHD---NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177
Query: 228 YANSNRFQMFPKDLFAE-------------------MKYLQVIKISYHKDSLKELPSGLF 268
+ + PKDL ++Y ++ ++ + ++ + +G
Sbjct: 178 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237
Query: 269 ANLPLLNTVILGESSIAELPSDL---------FWNSTNITNI 301
+ LP L + L + ++ +P+ L + ++ NIT +
Sbjct: 238 SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 37/245 (15%)
Query: 242 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 301
F +L+V++ S LK +P + + LL+ L + I+EL D F ++ +
Sbjct: 29 FGCHCHLRVVQCS--DLGLKAVPKEISPDTTLLD---LQNNDISELRKDDFKGLQHLYAL 83
Query: 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 361
VL + K++ + F +KL KL + +N L +P NL SL EL + +N++ +
Sbjct: 84 VLV-NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVP 139
Query: 362 SLV--GLSGLNSLDLSWNQLEQINL--IAFDGL--------------------SSLNTVD 397
V GL +N +++ N LE AFDGL +LN +
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199
Query: 398 LSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF 457
L HN + E + L + L + L +N+I + + +S + +L+EL L +N S
Sbjct: 200 LDHNKIQAIELE----DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255
Query: 458 IPDQL 462
+P L
Sbjct: 256 VPAGL 260
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 103/425 (24%), Positives = 177/425 (41%), Gaps = 65/425 (15%)
Query: 122 FKGTPQLESL--NLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI- 178
F GTP L + L+ ++ L+ G F+ D+ D++ + K L + +
Sbjct: 206 FGGTPNLSVIFNGLQNSTTQSLWLGTFE--------DIDDEDIS---SAMLKGLCEMSVE 254
Query: 179 -LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMF 237
LNL ++ +++ F L+ LD++ ++ LPSG+ L L+ + N F
Sbjct: 255 SLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGM-KGLNLLKKLVLSVNHFDQL 313
Query: 238 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI--AELPSDLFWNS 295
+ A L + I + L L G L L T+ L + I ++ S N
Sbjct: 314 CQISAANFPSLTHLYIRGNVKKL-HLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNLKN 354
+++ + L+ H + L S F++C +L L+L +L P++ F++L L LNL
Sbjct: 373 SHLQTLNLS-HNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
Query: 355 NQLE--NITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
L+ N L GL L L+L N + DG ++ +L
Sbjct: 432 CFLDTSNQHLLAGLPVLRHLNLKGNHFQ-------DG--TITKTNL-------------- 468
Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNK-LT 471
L+ +LE + LS + S+ S+ + +DL HN S D +DS+ K +
Sbjct: 469 --LQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHN--SLTCDSIDSLSHLKGIY 524
Query: 472 LDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVS 531
L+L+ N I I+ R L I + N L+ NP+ C CSN + +
Sbjct: 525 LNLAANSINIISPRLLPILSQQSTIN--------------LSHNPLDCTCSNIHFLTWYK 570
Query: 532 KKMTK 536
+ + K
Sbjct: 571 ENLHK 575
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 62/317 (19%)
Query: 94 PPYFDGLHFVKHILLS--HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGV--FQYV 149
P GL+ +K ++LS H ++ + F P L L +RGN + +L+ GV + +
Sbjct: 291 PSGMKGLNLLKKLVLSVNHFDQLCQISAANF---PSLTHLYIRGN-VKKLHLGVGCLEKL 346
Query: 150 PKLQVLDLGSNDVAYMD--PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG 207
LQ LDL ND+ D KNL+ L+ LNL HN+ + L F P L LD++
Sbjct: 347 GNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAF 406
Query: 208 NNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL 267
+ I P+ F + +LQV+ ++Y L L
Sbjct: 407 TRLHINA-----------------------PQSPFQNLHFLQVLNLTY--CFLDTSNQHL 441
Query: 268 FANLPLLNTVILGESSIAELPSDLFWNST-NITNIVLTGHKKLTSLPSTLFRDCKKLVKL 326
A LP+L + L + F + T TN++ T + SL + C
Sbjct: 442 LAGLPVLRHL--------NLKGNHFQDGTITKTNLLQT----VGSLEVLILSSC------ 483
Query: 327 ELQRNKLKYLPENLFESLKELYTLNLKNNQL--ENITSLVGLSGLNSLDLSWNQLEQINL 384
L + + F SL ++ ++L +N L ++I SL L G+ L+L+ N + I+
Sbjct: 484 -----GLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISP 537
Query: 385 IAFDGLSSLNTVDLSHN 401
LS +T++LSHN
Sbjct: 538 RLLPILSQQSTINLSHN 554
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 139/340 (40%), Gaps = 36/340 (10%)
Query: 121 IFKGTPQL--ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI 178
+ KG ++ ESLNL+ + +++ S FQ +LQ LDL + + + P K L L+
Sbjct: 244 MLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGL-PSGMKGLNLLKK 302
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
L L N L + N P+L L I GN + L GV
Sbjct: 303 LVLSVNHFDQLCQISAANFPSLTHLYIRGN-VKKLHLGV--------------------- 340
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
++ LQ + +S++ + S NL L T+ L + L S F +
Sbjct: 341 -GCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQL 399
Query: 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 358
+ L + + P + F++ L L L L ++L L L LNLK N +
Sbjct: 400 ELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Query: 359 NITS-----LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYS 413
+ T L + L L LS L I+ AF L ++ VDLSHN LT D S
Sbjct: 460 DGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSID-SLS 518
Query: 414 PLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN 453
LK +NL+ N I+ + + ++ ++L HN
Sbjct: 519 HLKGIY----LNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 158/355 (44%), Gaps = 46/355 (12%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGN--------------SITELY---SGV--FQYVP--- 150
+I +H+D F+ QL +L L GN S+ L+ +G+ +++P
Sbjct: 65 QINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHN 124
Query: 151 --KLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNL--RSLDI 205
L+ L LGSN ++ + P+ F +L++L+ +N + ++R ++ SL+
Sbjct: 125 LENLESLYLGSNHISSIKFPKDFP-ARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNF 183
Query: 206 SGNNISILPSGVF-SDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP 264
+GNN+ + G F S + + F N +F + + L + D +++
Sbjct: 184 NGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDD--EDIS 241
Query: 265 SGLFANLPLLN--TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 322
S + L ++ ++ L E +++ S F T + + LT L LPS + +
Sbjct: 242 SAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTA-THLKGLPSGM-KGLNL 299
Query: 323 LVKLELQRN---KLKYLPENLFESLKELYTL-NLKNNQLENITSLVGLSGLNSLDLSWNQ 378
L KL L N +L + F SL LY N+K L + L L L +LDLS N
Sbjct: 300 LKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHL-GVGCLEKLGNLQTLDLSHND 358
Query: 379 LEQINLIAFD--GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
+E + + LS L T++LSHN + K+C LE ++L++ R+
Sbjct: 359 IEASDCCSLQLKNLSHLQTLNLSHN----EPLGLQSQAFKECPQLELLDLAFTRL 409
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 177/420 (42%), Gaps = 56/420 (13%)
Query: 83 SNSPSNVGVLSPPYFDGLHFVKHILLSHNK-------------EITGLHKDIFK-GTP-- 126
+NS S V+ DG +KH+ +S NK E + + F G P
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 219
Query: 127 ----QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
L+ L++ GN ++ +S +L++L++ SN P + L SL+ L+L
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277
Query: 183 HNQLIN-LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM-FPKD 240
N+ + + L LD+SGN+ F L++ +SN F P D
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 241 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300
+M+ L+V+ +S+++ S ELP L NL S + L DL +S N +
Sbjct: 338 TLLKMRGLKVLDLSFNEFS-GELPESL-TNL-----------SASLLTLDL--SSNNFSG 382
Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
+ LP+ L +L LQ N + EL +L+L N L
Sbjct: 383 PI---------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 361 --TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQC 418
+SL LS L L L N LE + +L T+ L N LT E G L C
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSG---LSNC 489
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF-IPDQLDSIVSNKLTLDLSFN 477
NL I+LS NR++ WI + +L L L +N+FS IP +L S + LDL+ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTN 548
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 116/269 (43%), Gaps = 23/269 (8%)
Query: 146 FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205
YV L+ L L ND+ P N T+L ++L +N+L + NL L +
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHK------D 258
S N+ S D R L N+N F P +F + + I+ + D
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
+K+ G LL + + L + N NIT+ V GH T F
Sbjct: 582 GMKKECHGAGN---LLEFQGIRSEQLNRLSTR---NPCNITSRVYGGHTSPT------FD 629
Query: 319 DCKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLEN-ITSLVG-LSGLNSLDLS 375
+ ++ L++ N L Y+P+ + S+ L+ LNL +N + I VG L GLN LDLS
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 376 WNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
N+L+ A L+ L +DLS+N L+
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 105/428 (24%), Positives = 181/428 (42%), Gaps = 62/428 (14%)
Query: 94 PPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSIT-ELYSGVFQYVPKL 152
PP+F ++ + LS N L D L+ L+L N + EL + L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 153 QVLDLGSNDVAY-MDPEIFKN-LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
LDL SN+ + + P + +N +L+ L L +N +N L SL +S N +
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 211 S-ILPS--GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK--ISYHKDSLKELPS 265
S +PS G S LR L+ + M ++ E+ Y++ ++ I D E+PS
Sbjct: 431 SGTIPSSLGSLSKLRDLKLW------LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 266 GLFANLPLLNTVILGESSI-AELPSDLFWNST--NITNIVLTGHKKLTSLPSTLFRDCKK 322
GL +N LN + L + + E+P W N+ + L+ + ++P+ L DC+
Sbjct: 485 GL-SNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKLSNNSFSGNIPAEL-GDCRS 539
Query: 323 LVKLELQRNKL-KYLPENLFESLKELYT--------LNLKNNQLENITSLVGLSGLNSLD 373
L+ L+L N +P +F+ ++ + +KN+ ++ G N L+
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG----NLLE 595
Query: 374 LSWNQLEQINLIA-------------------FDGLSSLNTVDLSHNLLTFDEYQYGYSP 414
+ EQ+N ++ FD S+ +D+S+N+L+ GY P
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS------GYIP 649
Query: 415 --LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472
+ L +NL +N IS D + + L LDL N Q S ++ +
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 473 DLSFNQIA 480
DLS N ++
Sbjct: 710 DLSNNNLS 717
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 16/164 (9%)
Query: 341 FESLKELYTLNLKNNQLEN----ITSLVGLSGLNSLDLSWNQLEQINLIAFD-GLSSLNT 395
F+ L +L+L N L +TSL SGL L++S N L+ ++ L+SL
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 396 VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
+DLS N ++ G+ C L+ + +S N+IS D +S +L+ LD+ NNF
Sbjct: 156 LDLSANSIS-GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 212
Query: 456 S----FIPD----QLDSIVSNKLTLDLSFNQIAIVDLRTLEIKA 491
S F+ D Q I NKL+ D S +L+ L I +
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 149 VPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
+P L +L+LG ND++ P+ +L L IL+L N+L + + L +D+S N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 209 NISILPSGVFSDLRKLQTF 227
N+ SG ++ + +TF
Sbjct: 715 NL----SGPIPEMGQFETF 729
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 158/332 (47%), Gaps = 37/332 (11%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L +N N +T++ + + KL + + +N +A + P NLT+L L L +NQ+
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
++ N+ NL L++S N IS + + S L LQ +SN+ A +
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFSSNQVTDLKP--LANLTT 174
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
L+ + IS +K S + A L L ++I + I+++ P + TN+ + L G+
Sbjct: 175 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 227
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
K + +L S L L+L N++ L L +L L L NQ+ NI+ L
Sbjct: 228 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
GL+ L +L+L+ NQLE I+ I+ N +L++ L F+ SP+ L+ +
Sbjct: 281 GLTALTNLELNENQLEDISPIS-------NLKNLTYLTLYFNNIS-DISPVSSLTKLQRL 332
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
S N++S + ++++T++ L HN S
Sbjct: 333 FFSNNKVSDVSS--LANLTNINWLSAGHNQIS 362
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 123/277 (44%), Gaps = 35/277 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L L L N IT++ + + L L+L SN ++ D LTSL+ L+ NQ+
Sbjct: 109 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS--DISALSGLTSLQQLSFSSNQVT 164
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMK 246
+L N+ L LDIS N +S + V + L L++ A +N+ + P + +
Sbjct: 165 DLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLD 220
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP--------SDLFWNSTNI 298
L S + + LK++ G A+L L + L + I+ L ++L + I
Sbjct: 221 EL-----SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 273
Query: 299 TNIV-LTGHKKLTSLP--------STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
+NI L G LT+L + + K L L L N + + SL +L
Sbjct: 274 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 331
Query: 350 LNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIA 386
L NN++ +++SL L+ +N L NQ+ + +A
Sbjct: 332 LFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 368
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 12/138 (8%)
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
D ++ L+ R +K + E L L +N NNQL +IT L L+ L + ++ NQ
Sbjct: 39 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ I +A L++L + L +N +T PLK NL + LS N IS +
Sbjct: 97 IADITPLA--NLTNLTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNTISDI--SA 146
Query: 439 ISSMTSLKELDLRHNNFS 456
+S +TSL++L N +
Sbjct: 147 LSGLTSLQQLSFSSNQVT 164
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 102/410 (24%), Positives = 180/410 (43%), Gaps = 39/410 (9%)
Query: 75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLS---HNKEITGLHKDIFKGTPQLESL 131
T+I L+ SNS + S F GL + +L +N + G D F PQLE
Sbjct: 222 TSIRNLSLSNS--QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG--NDSFAWLPQLEYF 277
Query: 132 NLRGNSITELYSGVFQYVPKLQVLDLGSN---------DVAYMDPEIFKNLTSLRILNLD 182
L N+I L+S + ++ L+L + + +D F+ L L LN++
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337
Query: 183 HNQLINLTRAIFNNVPNLRSLDISGNNISI--LPSGVFSDLRK--LQTFYANSNRFQMFP 238
N + + +F + NL+ L +S + S+ L + F L L N+
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
D F+ + +L+V+ + ++ +EL + L + + L + +L + F ++
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456
Query: 299 TNIVL--TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
++L K + S PS F+ + L L+L N + + +++ E L++L L+L++N
Sbjct: 457 QRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515
Query: 357 LENITS----------LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
L + L GLS L+ L+L N ++I + F L L +DL N L
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-- 573
Query: 407 EYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS-SMTSLKELDLRHNNF 455
S V+L+++NL N I+S+ + +L ELD+R N F
Sbjct: 574 --TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 170/359 (47%), Gaps = 29/359 (8%)
Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL------ 173
DIF + L+ L L N I E G F + +L L L N+V + P + + L
Sbjct: 166 DIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFL--NNVQ-LGPSLTEKLCLELAN 221
Query: 174 TSLRILNLDHNQLINLTRAIFNNVP--NLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
TS+R L+L ++QL + F + NL LD+S NN++++ + F+ L +L+ F+
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 232 NRFQ-MFPKDLFA--EMKYLQVIKISYHKDS--LKELPS---GLFANLPLLNTVILGESS 283
N Q +F L ++YL +K S+ K S L LP F L L + + ++
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLN-LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340
Query: 284 IAELPSDLFWNSTNITNIVLT-GHKKLTSLPSTLFRDCKK--LVKLELQRNKLKYLPENL 340
I + S++F N+ + L+ L +L + F L L L +NK+ + +
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400
Query: 341 FESLKELYTLNLKNNQL-ENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVD 397
F L L L+L N++ + +T GL + + LS+N+ Q+ +F + SL +
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 398 LSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
L + SP + NL ++LS N I+++ DD + + L+ LDL+HNN +
Sbjct: 461 LRR--VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 108/394 (27%), Positives = 177/394 (44%), Gaps = 64/394 (16%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
L+HN ++ L F QL SL++ N+I++L + Q +P L+VL+L N+++ +
Sbjct: 32 LTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
+ F T+L L+L N + + F NL +LD+S N +S G L LQ
Sbjct: 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150
Query: 228 YANSNRFQMFPK---DLFAEMKYLQVIKISYHKDSLKELPSGLFANLP-----LLNTVIL 279
++N+ Q D+FA + K+ + +KE G F + LN V L
Sbjct: 151 LLSNNKIQALKSEELDIFANS---SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Query: 280 GESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK--KLVKLELQRNKL---- 333
G S +L +L +T+I N+ L+ + +L++ +T F K L L+L N L
Sbjct: 208 GPSLTEKLCLEL--ANTSIRNLSLS-NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264
Query: 334 ----KYLP------------ENLF-ESLKELYT---LNLKNNQLENITSLVGLSGLNSLD 373
+LP ++LF SL L+ LNLK + + SL L ++
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324
Query: 374 LSWNQ-LEQINLI----------AFDGLSSLNTVDLSHNL-----LTFDEY-QYGYSPLK 416
W + LE +N+ F GL +L + LS++ LT + + +SP
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-- 382
Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450
L +NL+ N+IS + D S + L+ LDL
Sbjct: 383 ----LHILNLTKNKISKIESDAFSWLGHLEVLDL 412
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 16/287 (5%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
T++ +LNL HNQL L A F L SLD+ N IS L + L L+ N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA--ELPSDL 291
FA L ++ +S++++ + F L T+ L + ++ +L + +
Sbjct: 85 LSQLSDKTFAFCTNL--TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
+ + + L S +F + L KLEL N++K F ++ L+ L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201
Query: 352 LKNNQL-----ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL--SSLNTVDLSHNLLT 404
L N QL E + + + + +L LS +QL + F GL ++L +DLS+N L
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261
Query: 405 FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
G LE L YN I LF + + +++ L+L+
Sbjct: 262 V----VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 103/413 (24%), Positives = 169/413 (40%), Gaps = 61/413 (14%)
Query: 89 VGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQY 148
+ L P L +K + L HN E++ L F L L+L NSI ++ + F
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119
Query: 149 VPKLQVLDLGSNDVAYM---------------------------DPEIFKNLTSLRILNL 181
L LDL N ++ + +IF N +SL+ L L
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLEL 178
Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS---------N 232
NQ+ + F+ + L L + NN+ + PS KL AN+ +
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFL--NNVQLGPSLT----EKLCLELANTSIRNLSLSNS 232
Query: 233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF 292
+ F +K+ + + ++L + + FA LP L L ++I L S
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
Query: 293 WNSTNIT--NIVLTGHKK---LTSLPST---LFRDCKKLVKLELQRNKLKYLPENLFESL 344
N+ N+ + K+ L SLP F+ K L L ++ N + + N+F L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352
Query: 345 KELYTLNLKNN--QLENIT--SLVGL--SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
L L+L N+ L +T + V L S L+ L+L+ N++ +I AF L L +DL
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412
Query: 399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
N + + + L+ N+ I LSYN+ L + + + SL+ L LR
Sbjct: 413 GLNEIGQELTGQEWRGLE---NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 133/290 (45%), Gaps = 42/290 (14%)
Query: 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
T ++SL+L N IT + + Q LQ L L SN + ++ + F +L SL L+L +N
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISIL-PSGVFSDLRKLQTF-YANSNRFQMFPKDLF 242
L NL+ + F + +L L++ GN L + +FS L KLQ N + F + F
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 243 AEMKYLQVIKI------SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 296
A + +L+ ++I SY SLK + + L + ++L E +F
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE---------IF---V 218
Query: 297 NITNIVLTGHKKLTSLPSTLFRD-----CKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
++T+ V + T L + F + L+K RN +K E+LF+ +K L
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN-VKITDESLFQVMKLL---- 273
Query: 352 LKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
NQ+ SGL L+ S NQL+ + FD L+SL + L N
Sbjct: 274 ---NQI---------SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 112/284 (39%), Gaps = 57/284 (20%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
VK + LS+N+ IT + + L++L L N I + F + L+ LDL N +
Sbjct: 54 VKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
+ + FK L+SL LNL N L + +FS L
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGE-----------------------TSLFSHLT 149
Query: 223 KLQTF-YANSNRFQMFPKDLFAEMKYLQVIKI------SYHKDSLKELPSGLFANLPLLN 275
KLQ N + F + FA + +L+ ++I SY SLK + + L +
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
Query: 276 TVILGE------SSIAELP-----------SDLFWNSTN-------ITNIVLTGHKKLTS 311
++L E SS+ L S+L TN N+ +T
Sbjct: 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269
Query: 312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
+ L L++LE RN+LK +P+ +F+ L L + L N
Sbjct: 270 MK--LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
++ ++DLS+N +T+ S L++CVNL+ + L+ N I+++ +D SS+ SL+ LDL
Sbjct: 53 AVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 452 HNNFS 456
+N S
Sbjct: 109 YNYLS 113
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGL 366
L S+PS L K L +L N++ Y+ + + L L L +N + I S L
Sbjct: 43 LNSIPSGLTEAVKSL---DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L LDLS+N L ++ F LSSL ++L N
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 177/420 (42%), Gaps = 56/420 (13%)
Query: 83 SNSPSNVGVLSPPYFDGLHFVKHILLSHNK-------------EITGLHKDIFK-GTP-- 126
+NS S V+ DG +KH+ +S NK E + + F G P
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 216
Query: 127 ----QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
L+ L++ GN ++ +S +L++L++ SN P + L SL+ L+L
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 274
Query: 183 HNQLIN-LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM-FPKD 240
N+ + + L LD+SGN+ F L++ +SN F P D
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 241 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300
+M+ L+V+ +S+++ S ELP L NL S + L DL +S N +
Sbjct: 335 TLLKMRGLKVLDLSFNEFS-GELPESL-TNL-----------SASLLTLDL--SSNNFSG 379
Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
+ LP+ L +L LQ N + EL +L+L N L
Sbjct: 380 PI---------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 361 --TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQC 418
+SL LS L L L N LE + +L T+ L N LT E G L C
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSG---LSNC 486
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF-IPDQLDSIVSNKLTLDLSFN 477
NL I+LS NR++ WI + +L L L +N+FS IP +L S + LDL+ N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTN 545
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 23/267 (8%)
Query: 148 YVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG 207
YV L+ L L ND+ P N T+L ++L +N+L + NL L +S
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 208 NNISILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHK------DSL 260
N+ S D R L N+N F P +F + + I+ + D +
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 580
Query: 261 KELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 320
K+ G LL + + L + N NIT+ V GH T F +
Sbjct: 581 KKECHGAGN---LLEFQGIRSEQLNRLSTR---NPCNITSRVYGGHTSPT------FDNN 628
Query: 321 KKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLEN-ITSLVG-LSGLNSLDLSWN 377
++ L++ N L Y+P+ + S+ L+ LNL +N + I VG L GLN LDLS N
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 378 QLEQINLIAFDGLSSLNTVDLSHNLLT 404
+L+ A L+ L +DLS+N L+
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLS 714
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 105/428 (24%), Positives = 181/428 (42%), Gaps = 62/428 (14%)
Query: 94 PPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSIT-ELYSGVFQYVPKL 152
PP+F ++ + LS N L D L+ L+L N + EL + L
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 153 QVLDLGSNDVAY-MDPEIFKN-LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
LDL SN+ + + P + +N +L+ L L +N +N L SL +S N +
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 427
Query: 211 S-ILPS--GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK--ISYHKDSLKELPS 265
S +PS G S LR L+ + M ++ E+ Y++ ++ I D E+PS
Sbjct: 428 SGTIPSSLGSLSKLRDLKLW------LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 266 GLFANLPLLNTVILGESSI-AELPSDLFWNST--NITNIVLTGHKKLTSLPSTLFRDCKK 322
GL +N LN + L + + E+P W N+ + L+ + ++P+ L DC+
Sbjct: 482 GL-SNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKLSNNSFSGNIPAEL-GDCRS 536
Query: 323 LVKLELQRNKL-KYLPENLFESLKELYT--------LNLKNNQLENITSLVGLSGLNSLD 373
L+ L+L N +P +F+ ++ + +KN+ ++ G N L+
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG----NLLE 592
Query: 374 LSWNQLEQINLIA-------------------FDGLSSLNTVDLSHNLLTFDEYQYGYSP 414
+ EQ+N ++ FD S+ +D+S+N+L+ GY P
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS------GYIP 646
Query: 415 --LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472
+ L +NL +N IS D + + L LDL N Q S ++ +
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 473 DLSFNQIA 480
DLS N ++
Sbjct: 707 DLSNNNLS 714
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 16/164 (9%)
Query: 341 FESLKELYTLNLKNNQLEN----ITSLVGLSGLNSLDLSWNQLEQINLIAFD-GLSSLNT 395
F+ L +L+L N L +TSL SGL L++S N L+ ++ L+SL
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 152
Query: 396 VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
+DLS N ++ G+ C L+ + +S N+IS D +S +L+ LD+ NNF
Sbjct: 153 LDLSANSISGANV-VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 209
Query: 456 S----FIPD----QLDSIVSNKLTLDLSFNQIAIVDLRTLEIKA 491
S F+ D Q I NKL+ D S +L+ L I +
Sbjct: 210 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 149 VPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
+P L +L+LG ND++ P+ +L L IL+L N+L + + L +D+S N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 209 NISILPSGVFSDLRKLQTF 227
N+ SG ++ + +TF
Sbjct: 712 NL----SGPIPEMGQFETF 726
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 170/359 (47%), Gaps = 29/359 (8%)
Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL------ 173
DIF + L+ L L N I E G F + +L L L N+V + P + + L
Sbjct: 176 DIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFL--NNVQ-LGPSLTEKLCLELAN 231
Query: 174 TSLRILNLDHNQLINLTRAIFNNVP--NLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
TS+R L+L ++QL + F + NL LD+S NN++++ + F+ L +L+ F+
Sbjct: 232 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 232 NRFQ-MFPKDLFA--EMKYLQVIKISYHKDS--LKELPS---GLFANLPLLNTVILGESS 283
N Q +F L ++YL +K S+ K S L LP F L L + + ++
Sbjct: 292 NNIQHLFSHSLHGLFNVRYLN-LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 350
Query: 284 IAELPSDLFWNSTNITNIVLT-GHKKLTSLPSTLFRDCKK--LVKLELQRNKLKYLPENL 340
I + S++F N+ + L+ L +L + F L L L +NK+ + +
Sbjct: 351 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 410
Query: 341 FESLKELYTLNLKNNQL-ENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVD 397
F L L L+L N++ + +T GL + + LS+N+ Q+ +F + SL +
Sbjct: 411 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 470
Query: 398 LSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
L + SP + NL ++LS N I+++ DD + + L+ LDL+HNN +
Sbjct: 471 LRR--VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 102/410 (24%), Positives = 180/410 (43%), Gaps = 39/410 (9%)
Query: 75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLS---HNKEITGLHKDIFKGTPQLESL 131
T+I L+ SNS + S F GL + +L +N + G D F PQLE
Sbjct: 232 TSIRNLSLSNS--QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG--NDSFAWLPQLEYF 287
Query: 132 NLRGNSITELYSGVFQYVPKLQVLDLGSN---------DVAYMDPEIFKNLTSLRILNLD 182
L N+I L+S + ++ L+L + + +D F+ L L LN++
Sbjct: 288 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 347
Query: 183 HNQLINLTRAIFNNVPNLRSLDISGNNISI--LPSGVFSDLRK--LQTFYANSNRFQMFP 238
N + + +F + NL+ L +S + S+ L + F L L N+
Sbjct: 348 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 407
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
D F+ + +L+V+ + ++ +EL + L + + L + +L + F ++
Sbjct: 408 SDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 466
Query: 299 TNIVL--TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
++L K + S PS F+ + L L+L N + + +++ E L++L L+L++N
Sbjct: 467 QRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 525
Query: 357 LENITS----------LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
L + L GLS L+ L+L N ++I + F L L +DL N L
Sbjct: 526 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-- 583
Query: 407 EYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS-SMTSLKELDLRHNNF 455
S V+L+++NL N I+S+ + +L ELD+R N F
Sbjct: 584 --TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 631
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 178/397 (44%), Gaps = 64/397 (16%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
L+HN ++ L F QL SL++ N+I++L + Q +P L+VL+L N+++ +
Sbjct: 42 LTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 100
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
+ F T+L L+L N + + F NL +LD+S N +S G L LQ
Sbjct: 101 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 160
Query: 228 YANSNRFQMFPK---DLFAEMKYLQVIKISYHKDSLKELPSGLFANLP-----LLNTVIL 279
++N+ Q D+FA + K+ + +KE G F + LN V L
Sbjct: 161 LLSNNKIQALKSEELDIFANS---SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 217
Query: 280 GESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK--KLVKLELQRNKL---- 333
G S +L +L +T+I N+ L+ + +L++ +T F K L L+L N L
Sbjct: 218 GPSLTEKLCLEL--ANTSIRNLSLS-NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 274
Query: 334 ----KYLP------------ENLF-ESLKELYT---LNLKNNQLENITSLVGLSGLNSLD 373
+LP ++LF SL L+ LNLK + + SL L ++
Sbjct: 275 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 334
Query: 374 LSWNQ-LEQINLI----------AFDGLSSLNTVDLSHNL-----LTFDEY-QYGYSPLK 416
W + LE +N+ F GL +L + LS++ LT + + +SP
Sbjct: 335 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-- 392
Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN 453
L +NL+ N+IS + D S + L+ LDL N
Sbjct: 393 ----LHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 425
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 16/287 (5%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
T++ +LNL HNQL L A F L SLD+ N IS L + L L+ N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA--ELPSDL 291
FA L ++ +S++++ + F L T+ L + ++ +L + +
Sbjct: 95 LSQLSDKTFAFCTNL--TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 152
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
+ + + L S +F + L KLEL N++K F ++ L+ L
Sbjct: 153 QLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 211
Query: 352 LKNNQL-----ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL--SSLNTVDLSHNLLT 404
L N QL E + + + + +L LS +QL + F GL ++L +DLS+N L
Sbjct: 212 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 271
Query: 405 FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
G LE L YN I LF + + +++ L+L+
Sbjct: 272 V----VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 314
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 103/413 (24%), Positives = 169/413 (40%), Gaps = 61/413 (14%)
Query: 89 VGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQY 148
+ L P L +K + L HN E++ L F L L+L NSI ++ + F
Sbjct: 71 ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 129
Query: 149 VPKLQVLDLGSNDVAYM---------------------------DPEIFKNLTSLRILNL 181
L LDL N ++ + +IF N +SL+ L L
Sbjct: 130 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLEL 188
Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS---------N 232
NQ+ + F+ + L L + NN+ + PS KL AN+ +
Sbjct: 189 SSNQIKEFSPGCFHAIGRLFGLFL--NNVQLGPSLT----EKLCLELANTSIRNLSLSNS 242
Query: 233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF 292
+ F +K+ + + ++L + + FA LP L L ++I L S
Sbjct: 243 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 302
Query: 293 WNSTNIT--NIVLTGHKK---LTSLPST---LFRDCKKLVKLELQRNKLKYLPENLFESL 344
N+ N+ + K+ L SLP F+ K L L ++ N + + N+F L
Sbjct: 303 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 362
Query: 345 KELYTLNLKNN--QLENIT--SLVGL--SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
L L+L N+ L +T + V L S L+ L+L+ N++ +I AF L L +DL
Sbjct: 363 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 422
Query: 399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
N + + + L+ N+ I LSYN+ L + + + SL+ L LR
Sbjct: 423 GLNEIGQELTGQEWRGLE---NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 472
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 102/410 (24%), Positives = 180/410 (43%), Gaps = 39/410 (9%)
Query: 75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLS---HNKEITGLHKDIFKGTPQLESL 131
T+I L+ SNS + S F GL + +L +N + G D F PQLE
Sbjct: 227 TSIRNLSLSNS--QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG--NDSFAWLPQLEYF 282
Query: 132 NLRGNSITELYSGVFQYVPKLQVLDLGSN---------DVAYMDPEIFKNLTSLRILNLD 182
L N+I L+S + ++ L+L + + +D F+ L L LN++
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 342
Query: 183 HNQLINLTRAIFNNVPNLRSLDISGNNISI--LPSGVFSDLRK--LQTFYANSNRFQMFP 238
N + + +F + NL+ L +S + S+ L + F L L N+
Sbjct: 343 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 402
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
D F+ + +L+V+ + ++ +EL + L + + L + +L + F ++
Sbjct: 403 SDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 461
Query: 299 TNIVL--TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
++L K + S PS F+ + L L+L N + + +++ E L++L L+L++N
Sbjct: 462 QRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 520
Query: 357 LENITS----------LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
L + L GLS L+ L+L N ++I + F L L +DL N L
Sbjct: 521 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-- 578
Query: 407 EYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS-SMTSLKELDLRHNNF 455
S V+L+++NL N I+S+ + +L ELD+R N F
Sbjct: 579 --TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 626
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 170/359 (47%), Gaps = 29/359 (8%)
Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL------ 173
DIF + L+ L L N I E G F + +L L L N+V + P + + L
Sbjct: 171 DIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFL--NNVQ-LGPSLTEKLCLELAN 226
Query: 174 TSLRILNLDHNQLINLTRAIFNNVP--NLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
TS+R L+L ++QL + F + NL LD+S NN++++ + F+ L +L+ F+
Sbjct: 227 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 286
Query: 232 NRFQ-MFPKDLFA--EMKYLQVIKISYHKDS--LKELPS---GLFANLPLLNTVILGESS 283
N Q +F L ++YL +K S+ K S L LP F L L + + ++
Sbjct: 287 NNIQHLFSHSLHGLFNVRYLN-LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 345
Query: 284 IAELPSDLFWNSTNITNIVLT-GHKKLTSLPSTLFRDCKK--LVKLELQRNKLKYLPENL 340
I + S++F N+ + L+ L +L + F L L L +NK+ + +
Sbjct: 346 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 405
Query: 341 FESLKELYTLNLKNNQL-ENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVD 397
F L L L+L N++ + +T GL + + LS+N+ Q+ +F + SL +
Sbjct: 406 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 465
Query: 398 LSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
L + SP + NL ++LS N I+++ DD + + L+ LDL+HNN +
Sbjct: 466 LRR--VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 108/394 (27%), Positives = 177/394 (44%), Gaps = 64/394 (16%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
L+HN ++ L F QL SL++ N+I++L + Q +P L+VL+L N+++ +
Sbjct: 37 LTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 95
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
+ F T+L L+L N + + F NL +LD+S N +S G L LQ
Sbjct: 96 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 155
Query: 228 YANSNRFQMFPK---DLFAEMKYLQVIKISYHKDSLKELPSGLFANLP-----LLNTVIL 279
++N+ Q D+FA + K+ + +KE G F + LN V L
Sbjct: 156 LLSNNKIQALKSEELDIFANS---SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 212
Query: 280 GESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK--KLVKLELQRNKL---- 333
G S +L +L +T+I N+ L+ + +L++ +T F K L L+L N L
Sbjct: 213 GPSLTEKLCLEL--ANTSIRNLSLS-NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 269
Query: 334 ----KYLP------------ENLF-ESLKELYT---LNLKNNQLENITSLVGLSGLNSLD 373
+LP ++LF SL L+ LNLK + + SL L ++
Sbjct: 270 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 329
Query: 374 LSWNQ-LEQINLI----------AFDGLSSLNTVDLSHNL-----LTFDEY-QYGYSPLK 416
W + LE +N+ F GL +L + LS++ LT + + +SP
Sbjct: 330 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-- 387
Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450
L +NL+ N+IS + D S + L+ LDL
Sbjct: 388 ----LHILNLTKNKISKIESDAFSWLGHLEVLDL 417
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 16/287 (5%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
T++ +LNL HNQL L A F L SLD+ N IS L + L L+ N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA--ELPSDL 291
FA L ++ +S++++ + F L T+ L + ++ +L + +
Sbjct: 90 LSQLSDKTFAFCTNL--TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 147
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
+ + + L S +F + L KLEL N++K F ++ L+ L
Sbjct: 148 QLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 206
Query: 352 LKNNQL-----ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL--SSLNTVDLSHNLLT 404
L N QL E + + + + +L LS +QL + F GL ++L +DLS+N L
Sbjct: 207 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 266
Query: 405 FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
G LE L YN I LF + + +++ L+L+
Sbjct: 267 V----VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 309
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 103/413 (24%), Positives = 169/413 (40%), Gaps = 61/413 (14%)
Query: 89 VGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQY 148
+ L P L +K + L HN E++ L F L L+L NSI ++ + F
Sbjct: 66 ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 124
Query: 149 VPKLQVLDLGSNDVAYM---------------------------DPEIFKNLTSLRILNL 181
L LDL N ++ + +IF N +SL+ L L
Sbjct: 125 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLEL 183
Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS---------N 232
NQ+ + F+ + L L + NN+ + PS KL AN+ +
Sbjct: 184 SSNQIKEFSPGCFHAIGRLFGLFL--NNVQLGPSLT----EKLCLELANTSIRNLSLSNS 237
Query: 233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF 292
+ F +K+ + + ++L + + FA LP L L ++I L S
Sbjct: 238 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 297
Query: 293 WNSTNIT--NIVLTGHKK---LTSLPST---LFRDCKKLVKLELQRNKLKYLPENLFESL 344
N+ N+ + K+ L SLP F+ K L L ++ N + + N+F L
Sbjct: 298 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 357
Query: 345 KELYTLNLKNN--QLENIT--SLVGL--SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
L L+L N+ L +T + V L S L+ L+L+ N++ +I AF L L +DL
Sbjct: 358 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 417
Query: 399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
N + + + L+ N+ I LSYN+ L + + + SL+ L LR
Sbjct: 418 GLNEIGQELTGQEWRGLE---NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 467
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 140/344 (40%), Gaps = 65/344 (18%)
Query: 116 GLHKDIFKGTPQLES----LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA-YMDPEIF 170
GLH+ P+L + ++L NSI EL F + LQ L + + F
Sbjct: 21 GLHQ-----VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75
Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI--SILPSGVFSDLRKLQTFY 228
+ L+SL IL LD+NQ + L FN + NL L ++ N+ ++L F L L+
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135
Query: 229 ANSNRFQMF-PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
N + P F M+ V+ ++++K +K + N + +L SSI
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNK--VKSICEEDLLNFQGKHFTLLRLSSITLQ 193
Query: 288 PSDLFW----------NSTNITNIVLTGH-------KKL--------------------- 309
+ +W +T+IT + L+G+ K+
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Query: 310 TSLPSTLFRD----------CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 359
+S T F+D + +L ++K+ L +++F +L L L N++
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313
Query: 360 I--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
I + GL+ L L L NQL+ + FD L+SL + L N
Sbjct: 314 IDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 157/332 (47%), Gaps = 38/332 (11%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L +N N +T++ + + KL + + +N +A + P NLT+L L L +NQ+
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
++ N+ NL L++S N IS + + S L LQ + + P A +
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFGNQVTDLKP---LANLTT 173
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
L+ + IS +K S + A L L ++I + I+++ P + TN+ + L G+
Sbjct: 174 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 226
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
K + +L S L L+L N++ L L +L L L NQ+ NI+ L
Sbjct: 227 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 279
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
GL+ L +L+L+ NQLE I+ I+ N +L++ L F+ SP+ L+ +
Sbjct: 280 GLTALTNLELNENQLEDISPIS-------NLKNLTYLTLYFNNIS-DISPVSSLTKLQRL 331
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
S N++S + ++++T++ L HN S
Sbjct: 332 FFSNNKVSDVSS--LANLTNINWLSAGHNQIS 361
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
D ++ L+ R +K + E L L +N NNQL +IT L L+ L + ++ NQ
Sbjct: 39 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ I +A L++L + L +N +T PLK NL + LS N IS +
Sbjct: 97 IADITPLA--NLTNLTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNTISDI--SA 146
Query: 439 ISSMTSLKELDLRH 452
+S +TSL++L+ +
Sbjct: 147 LSGLTSLQQLNFGN 160
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 123/277 (44%), Gaps = 36/277 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L L L N IT++ + + L L+L SN ++ D LTSL+ LN NQ+
Sbjct: 109 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS--DISALSGLTSLQQLNF-GNQVT 163
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMK 246
+L N+ L LDIS N +S + V + L L++ A +N+ + P + +
Sbjct: 164 DLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLD 219
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP--------SDLFWNSTNI 298
L S + + LK++ G A+L L + L + I+ L ++L + I
Sbjct: 220 EL-----SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 272
Query: 299 TNIV-LTGHKKLTSLP--------STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
+NI L G LT+L + + K L L L N + + SL +L
Sbjct: 273 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 330
Query: 350 LNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIA 386
L NN++ +++SL L+ +N L NQ+ + +A
Sbjct: 331 LFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 367
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 110 HNKEITGLHK-DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPE 168
+N E T L IFK PQL +N N IT++ G F+ + + L SN + + +
Sbjct: 40 NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK 99
Query: 169 IFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY 228
+FK L SL+ L L N++ + F + ++R L + N I+ + G F L L T
Sbjct: 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159
Query: 229 ANSNRF 234
+N F
Sbjct: 160 LLANPF 165
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 324 VKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLE 380
+L L N+ L +F+ L +L +N NN++ +I + G SG+N + L+ N+LE
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLET-INLSYNRISSLFDDWI 439
+ F GL SL T+ L N +T CV ++ I LS R+ SL+D+ I
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRIT-------------CVGNDSFIGLSSVRLLSLYDNQI 141
Query: 440 SSMT 443
+++
Sbjct: 142 TTVA 145
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 27/139 (19%)
Query: 265 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 324
+G+F LP L + + I ++ F ++ + I+LT
Sbjct: 50 TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS------------------- 90
Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQI 382
N+L+ + +F+ L+ L TL L++N++ + S +GLS + L L NQ+ +
Sbjct: 91 ------NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144
Query: 383 NLIAFDGLSSLNTVDLSHN 401
AFD L SL+T++L N
Sbjct: 145 APGAFDTLHSLSTLNLLAN 163
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F+G V ILL+ N+ HK +FKG L++L LR N IT + + F + +++L
Sbjct: 77 FEGASGVNEILLTSNRLENVQHK-MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNL 181
L N + + P F L SL LNL
Sbjct: 136 LYDNQITTVAPGAFDTLHSLSTLNL 160
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 126 PQLES-LNLRGNSITEL-YSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
PQ + L L N T L +G+F+ +P+L+ ++ +N + ++ F+ + + + L
Sbjct: 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90
Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR--KLQTFYAN 230
N+L N+ +F + +L++L + N I+ + + F L +L + Y N
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 27/123 (21%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLP-VTYEDK---------KATSI------ 617
CP +C C + +V+CS+ L +P+++P T E + +AT I
Sbjct: 5 CPEKCRCEGT------TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQ 58
Query: 618 --QLILHNNSINHFLESPPESYKLITDLDLSYNNISHVD-TMYPYLNHLE--LIDSEKII 672
++ NN I E E + ++ L+ N + +V M+ L L+ ++ S +I
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 673 CHG 675
C G
Sbjct: 119 CVG 121
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 89/242 (36%), Gaps = 54/242 (22%)
Query: 332 KLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLS 391
KL +PE++ + EL N + LE L L ++ S N++ I AF+G S
Sbjct: 22 KLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
+N I L+ NR+ ++ + SLK L LR
Sbjct: 82 GVNE----------------------------ILLTSNRLENVQHKMFKGLESLKTLMLR 113
Query: 452 HNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVI 511
N + + + +S+ L L NQI V P T+ S + +
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTV------------APGAFDTL--HSLSTLN 159
Query: 512 LNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLEC---FGNAGVGINSVRPENLT 568
L NP CNC L ++ KK +VT N C + + I V ++ T
Sbjct: 160 LLANPFNCNCYLAWLGEWLRKK---------RIVTGNPRCQKPYFLKEIPIQDVAIQDFT 210
Query: 569 CD 570
CD
Sbjct: 211 CD 212
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 138 ITELY--SGVFQYVPK-------LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
+TELY F VPK L ++DL +N ++ + + F N+T L L L +N+L
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
+ F+ + +LR L + GN+IS++P G F+DL L +N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
L LD NQ L +N +L +D+S N IS L + FS++ +L T + NR + P
Sbjct: 36 LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG 280
F +K L++ +S H + + +P G F +L L+ + +G
Sbjct: 95 PRTFDGLKSLRL--LSLHGNDISVVPEGAFNDLSALSHLAIG 134
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 31/152 (20%)
Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPS 265
S + +LP G+ D+ +L Y + N+F + PK+L + K+L +I +S ++
Sbjct: 18 SNKGLKVLPKGIPRDVTEL---YLDGNQFTLVPKEL-SNYKHLTLIDLSNNR-------- 65
Query: 266 GLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 325
I+ L + F N T + ++L+ + +L +P F K L
Sbjct: 66 ------------------ISTLSNQSFSNMTQLLTLILS-YNRLRCIPPRTFDGLKSLRL 106
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
L L N + +PE F L L L + N L
Sbjct: 107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
T + +V +K L LP + RD + +L L N+ +P+ L + K L ++L NN
Sbjct: 9 TCLDTVVRCSNKGLKVLPKGIPRD---VTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNN 64
Query: 356 QLENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
++ ++ S ++ L +L LS+N+L I FDGL SL + L N
Sbjct: 65 RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQ-LDSIVSNKLTLDLSFNQ 478
+L I+LS NRIS+L + S+MT L L L +N IP + D + S +L L L N
Sbjct: 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL-LSLHGND 113
Query: 479 IAIV------DLRTLEIKAAAQDP 496
I++V DL L A +P
Sbjct: 114 ISVVPEGAFNDLSALSHLAIGANP 137
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSI--TELYSGVFQYVPKLQVLDLGSNDVAY 164
L H EIT + K +F G Q+ + L N + + + +G FQ + KL + + ++
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185
Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
+ + +LT L+LD N++ + A + NL L +S N+IS + +G ++ L
Sbjct: 186 IPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVI 251
+ + N+N+ P L A+ KY+QV+
Sbjct: 243 RELHLNNNKLVKVPGGL-ADHKYIQVV 268
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 30/248 (12%)
Query: 236 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 295
M P F +L+V++ S L+++P L + LL+ L + I E+ F N
Sbjct: 21 MGPVCPFRCQCHLRVVQCS--DLGLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNL 75
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
N+ ++L + K++ + F KL +L L +N+LK LPE + ++L+EL + N
Sbjct: 76 KNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHEN 131
Query: 356 QLENITSLV--GLSGLNSLDLSWNQLEQ--INLIAFDGLSSLNTVDLSH-NLLTFDE--- 407
++ + V GL+ + ++L N L+ I AF G+ L+ + ++ N+ T +
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191
Query: 408 -------------YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
+ + LK NL + LS+N IS++ + +++ L+EL L +N
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 455 FSFIPDQL 462
+P L
Sbjct: 252 LVKVPGGL 259
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 7/208 (3%)
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
P +LDL +N + + FKNL +L L L +N++ ++ F + L L +S N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA 269
+ LP + + LQ + N K +F + + V+++ + + +G F
Sbjct: 112 LKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329
+ L+ + + +++I +P L ++T + L G+ K+T + + + L KL L
Sbjct: 169 GMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLS 224
Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQL 357
N + + + L L+L NN+L
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%)
Query: 97 FDGLHFVKHILLSHNK-EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
F+GL+ + + L N + +G+ F+G +L + + +IT + G+ P L L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTEL 197
Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
L N + +D K L +L L L N + + N P+LR L ++ N + +P
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
Query: 216 GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
G +D + +Q Y ++N + F Y K SY SL
Sbjct: 258 G-LADHKYIQVVYLHNNNISAIGSNDFCPPGY-NTKKASYSGVSL 300
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
N +IT + FK L +L L N I+++ G F + KL+ L L N + + ++
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI--SILPSGVFSDLRKLQTF 227
K L LR+ N++ + +++FN + + +++ N + S + +G F ++KL
Sbjct: 120 PKTLQELRV---HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Query: 228 YANSNRFQMFPKDL------------------FAEMKYL-QVIKISYHKDSLKELPSGLF 268
P+ L A +K L + K+ +S+ + +G
Sbjct: 177 RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 269 ANLPLLNTVILGESSIAELPSDL 291
AN P L + L + + ++P L
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGL 259
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 40/187 (21%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQ-- 381
L+LQ NK+ + + F++LK L+TL L NN++ I+ + L L L LS NQL++
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 382 -------------------INLIAFDGLSSLNTVDLSHNLLTFDEYQYG-YSPLKQCVNL 421
+ F+GL+ + V+L N L + G + +K+
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK---- 172
Query: 422 ETINLSYNRISSLFDDWISSM-----TSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSF 476
LSY RI+ D I+++ SL EL L N + + ++N L LSF
Sbjct: 173 ----LSYIRIA---DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 477 NQIAIVD 483
N I+ VD
Sbjct: 226 NSISAVD 232
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSI--TELYSGVFQYVPKLQVLDLGSNDVAY 164
L H EIT + K +F G Q+ + L N + + + +G FQ + KL + + ++
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185
Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
+ + +LT L+LD N++ + A + NL L +S N+IS + +G ++ L
Sbjct: 186 IPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVI 251
+ + N+N+ P L A+ KY+QV+
Sbjct: 243 RELHLNNNKLVKVPGGL-ADHKYIQVV 268
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 30/248 (12%)
Query: 236 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 295
M P F +L+V++ S L+++P L + LL+ L + I E+ F N
Sbjct: 21 MGPVCPFRCQCHLRVVQCS--DLGLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNL 75
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
N+ ++L + K++ + F KL +L L +N+LK LPE + ++L+EL + N
Sbjct: 76 KNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHEN 131
Query: 356 QLENITSLV--GLSGLNSLDLSWNQLEQ--INLIAFDGLSSLNTVDLSH-NLLTFDE--- 407
++ + V GL+ + ++L N L+ I AF G+ L+ + ++ N+ T +
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191
Query: 408 -------------YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
+ + LK NL + LS+N IS++ + +++ L+EL L +N
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 455 FSFIPDQL 462
+P L
Sbjct: 252 LVKVPGGL 259
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 7/208 (3%)
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
P +LDL +N + + FKNL +L L L +N++ ++ F + L L +S N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA 269
+ LP + + LQ + N K +F + + V+++ + + +G F
Sbjct: 112 LKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329
+ L+ + + +++I +P L ++T + L G+ K+T + + + L KL L
Sbjct: 169 GMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLS 224
Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQL 357
N + + + L L+L NN+L
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%)
Query: 97 FDGLHFVKHILLSHNK-EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
F+GL+ + + L N + +G+ F+G +L + + +IT + G+ P L L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTEL 197
Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
L N + +D K L +L L L N + + N P+LR L ++ N + +P
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
Query: 216 GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
G +D + +Q Y ++N + F Y K SY SL
Sbjct: 258 G-LADHKYIQVVYLHNNNISAIGSNDFCPPGY-NTKKASYSGVSL 300
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
N +IT + FK L +L L N I+++ G F + KL+ L L N + + ++
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI--SILPSGVFSDLRKLQTF 227
K L LR+ N++ + +++FN + + +++ N + S + +G F ++KL
Sbjct: 120 PKTLQELRV---HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Query: 228 YANSNRFQMFPKDL------------------FAEMKYL-QVIKISYHKDSLKELPSGLF 268
P+ L A +K L + K+ +S+ + +G
Sbjct: 177 RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 269 ANLPLLNTVILGESSIAELPSDL 291
AN P L + L + + ++P L
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGL 259
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 40/187 (21%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQ-- 381
L+LQ NK+ + + F++LK L+TL L NN++ I+ + L L L LS NQL++
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 382 -------------------INLIAFDGLSSLNTVDLSHNLLTFDEYQYG-YSPLKQCVNL 421
+ F+GL+ + V+L N L + G + +K+
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK---- 172
Query: 422 ETINLSYNRISSLFDDWISSM-----TSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSF 476
LSY RI+ D I+++ SL EL L N + + ++N L LSF
Sbjct: 173 ----LSYIRIA---DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 477 NQIAIVD 483
N I+ VD
Sbjct: 226 NSISAVD 232
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQIN 383
L+L N L++L F S EL L+L +++ I + LS L++L L+ N ++ +
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 384 LIAFDGLSSLNT-VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISS 441
L AF GLSSL V L NL + + + P+ L+ +N+++N I S ++ S+
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 442 MTSLKELDLRHNNFSFIP-------DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQ 494
+T+L+ LDL N I Q+ + + N I + + +K A
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 209
Query: 495 DPNEDSTM------VARSANIVILNDNPIACNCSNYD-LIRFVSKKMTK 536
D N+ ++ S + L+ NP C+C D L R+++K K
Sbjct: 210 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 258
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
EI + ++ L +L L GN I L G F + LQ L ++A ++ +
Sbjct: 65 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGH 124
Query: 173 LTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF--YA 229
L +L+ LN+ HN + + F+N+ NL LD+S N I S +DLR L
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLN 181
Query: 230 NSNRFQMFPKDLF--AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
S + P + K +++ +++ + LK +P G+F L L + L
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 233
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
S + L+L N L +L F + P L+ LD+S I + G + L L T N
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 235 QMFPKDLFAEMKYLQ-VIKISYHKDSLKELPSGLFANLPLLNTV--ILGESSIAELPSDL 291
Q F+ + LQ ++ + + SL+ P G L LN ++ + E S+L
Sbjct: 91 QSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Query: 292 F------WNSTNITNIVLTGHKKLTSLPSTL-----------------FRDCKKLVKLEL 328
+S I +I T + L +P F++ +L +L L
Sbjct: 151 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELAL 209
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNN 355
N+LK +P+ +F+ L L + L N
Sbjct: 210 DTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
++L+L N + L S F P+LQVLDL ++ ++ +++L+ L L L N + +
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP-KDLFAEMKY 247
L F+ + +L+ L N++ L + L+ L+ N Q F + F+ +
Sbjct: 93 LALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 248 LQVIKISYHK 257
L+ + +S +K
Sbjct: 153 LEHLDLSSNK 162
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
+++ G S+ + +G+ QVL L N + ++P +F LT L L+LD+NQL L
Sbjct: 13 TVDCSGKSLASVPTGIPTTT---QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 190 TRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
+F+ + L L ++ N + +P G F +LR L + +N + D+ +++
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWI 128
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335
TV S+A +P+ + T ++ ++T L +F +L +L+L N+L
Sbjct: 13 TVDCSGKSLASVPTGI----PTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 336 LPENLFESLKELYTLNLKNNQLENI 360
LP +F+ L +L L+L +NQL++I
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSI 93
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
SL +P+G+ +L L ++ I +L +F T +T + L + +LT LP+ +F
Sbjct: 20 SLASVPTGIPTTTQVL---YLYDNRITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFD 75
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS 362
+L +L L N+LK +P F++L+ L + L NN + S
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACS 119
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 99 GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG 158
G+ +L ++ IT L +F QL L+L N +T L +GVF + +L L L
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 159 SNDVAYMDPEIFKNLTSL 176
N + + F NL SL
Sbjct: 87 DNQLKSIPRGAFDNLRSL 104
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 202 SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK 261
++D SG +++ +P+G+ + Q Y NR +F + Q+ ++ + L
Sbjct: 13 TVDCSGKSLASVPTGIPT---TTQVLYLYDNRITKLEPGVFDRLT--QLTRLDLDNNQLT 67
Query: 262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 303
LP+G+F L L + L ++ + +P F N ++T+I L
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQIN 383
L L N++ L +F+ L +L L+L NNQL + + V L+ L L L+ NQL+ I
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 384 LIAFDGLSSLNTVDLSHN 401
AFD L SL + L +N
Sbjct: 95 RGAFDNLRSLTHIWLLNN 112
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 429 NRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLE 488
NRI+ L +T L LDL +N + +P + V +KLT Q+++ D +
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLTVLP----AGVFDKLT---QLTQLSLNDNQLKS 92
Query: 489 IKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTK---TVYQMLELV 545
I A D RS + L +NP C CS+ I ++S+ +++ V+ L L
Sbjct: 93 IPRGAFD-------NLRSLTHIWLLNNPWDCACSD---ILYLSRWISQHPWLVFGYLNLD 142
Query: 546 TDNLECFG 553
D+ C G
Sbjct: 143 HDSARCSG 150
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CP++C C S +V+CS SL +P +P T + L L++N I
Sbjct: 3 CPSQCSC------SGTTVDCSGKSLASVPTGIPTTTQ-------VLYLYDNRITKLEPGV 49
Query: 634 PESYKLITDLDLSYNNIS 651
+ +T LDL N ++
Sbjct: 50 FDRLTQLTRLDLDNNQLT 67
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 157/332 (47%), Gaps = 38/332 (11%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L +N N +T++ + + KL + + +N +A + P NLT+L L L +NQ+
Sbjct: 69 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 124
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
++ N+ NL L++S N IS + + S L LQ + + P A +
Sbjct: 125 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKP---LANLTT 177
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
L+ + IS +K S + A L L ++I + I+++ P + TN+ + L G+
Sbjct: 178 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 230
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
K + +L S L L+L N++ L L +L L L NQ+ NI+ L
Sbjct: 231 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 283
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
GL+ L +L+L+ NQLE I+ I+ N +L++ L F+ SP+ L+ +
Sbjct: 284 GLTALTNLELNENQLEDISPIS-------NLKNLTYLTLYFNNIS-DISPVSSLTKLQRL 335
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
+ N++S + ++++T++ L HN S
Sbjct: 336 FFANNKVSDVSS--LANLTNINWLSAGHNQIS 365
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
D ++ L+ R +K + E L L +N NNQL +IT L L+ L + ++ NQ
Sbjct: 43 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 100
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ I +A L++L + L +N +T PLK NL + LS N IS +
Sbjct: 101 IADITPLA--NLTNLTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNTISDI--SA 150
Query: 439 ISSMTSLKEL 448
+S +TSL++L
Sbjct: 151 LSGLTSLQQL 160
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 123/277 (44%), Gaps = 36/277 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L L L N IT++ + + L L+L SN ++ D LTSL+ L+ NQ+
Sbjct: 113 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS--DISALSGLTSLQQLSF-GNQVT 167
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMK 246
+L N+ L LDIS N +S + V + L L++ A +N+ + P + +
Sbjct: 168 DLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLD 223
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP--------SDLFWNSTNI 298
L S + + LK++ G A+L L + L + I+ L ++L + I
Sbjct: 224 EL-----SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 276
Query: 299 TNIV-LTGHKKLTSLP--------STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
+NI L G LT+L + + K L L L N + + SL +L
Sbjct: 277 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 334
Query: 350 LNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIA 386
L NN++ +++SL L+ +N L NQ+ + +A
Sbjct: 335 LFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 371
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 160/349 (45%), Gaps = 43/349 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L +N N +T++ + + KL + + +N +A + P NLT+L L L +NQ+
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
++ N+ NL L++S N IS + + S L LQ +SN+ A +
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFSSNQVTDLKP--LANLTT 174
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
L+ + IS +K S + A L L ++I + I+++ P + TN+ + L G+
Sbjct: 175 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 227
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
K + +L S L L+L N++ L L +L L L NQ+ NI+ L
Sbjct: 228 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 365 GLSGLNSLDLSWNQLEQINLIA-----------FDGLSSLNTVDLSHNLLTFDEYQYGYS 413
GL+ L +L+L+ NQLE I+ I+ F+ +S ++ V L Y S
Sbjct: 281 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 340
Query: 414 PLKQCVNLETIN---LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
+ NL IN +N+IS L ++++T + +L L ++ P
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 387
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 12/138 (8%)
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
D ++ L+ R +K + E L L +N NNQL +IT L L+ L + ++ NQ
Sbjct: 39 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ I +A L++L + L +N +T PLK NL + LS N IS +
Sbjct: 97 IADITPLA--NLTNLTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNTISDI--SA 146
Query: 439 ISSMTSLKELDLRHNNFS 456
+S +TSL++L N +
Sbjct: 147 LSGLTSLQQLSFSSNQVT 164
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 154 VLDLGSNDVAYMDPEIF-KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
+LDL N+++ + E LT+L L L HN L ++ F VPNLR LD+S N++
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN-- 270
L +FSDL+ L+ +N + ++ F +M LQ + +S ++ + P L +
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS--QNQISRFPVELIKDGN 160
Query: 271 -LPLLNTVILGESSIAELP 288
LP L + L + + +LP
Sbjct: 161 KLPKLMLLDLSSNKLKKLP 179
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L SL L N + + S F VP L+ LDL SN + +D +F +L +L +L L +N ++
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSD---LRKLQTFYANSNRFQMFP 238
+ R F ++ L+ L +S N IS P + D L KL +SN+ + P
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 131 LNLRGNSITELYSGVFQYVPK----LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
L+L N+++ L + ++ P L L L N + ++ E F + +LR L+L N L
Sbjct: 44 LDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
L +F+++ L L + N+I ++ F D+ +LQ Y + N+ FP +L +
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160
Query: 247 YL-QVIKISYHKDSLKELPSGLFANLP 272
L +++ + + LK+LP LP
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLP 187
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 21/182 (11%)
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL-TFDEYQYGYSPLKQCVNLETI 424
L+ L+SL LS N L I+ AF + +L +DLS N L T DE+ + S L+ LE +
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF--SDLQA---LEVL 117
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL---DSIVSNKLTLDLSFNQIAI 481
L N I + + M L++L L N S P +L + + + LDLS N++
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Query: 482 VDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQM 541
+ L L+ + A N + L++NP+ C+C Y L + +V
Sbjct: 178 LPLTDLQ------------KLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDF 225
Query: 542 LE 543
E
Sbjct: 226 QE 227
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 106 ILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQ---YVPKLQVLDLGSNDV 162
+LL +N I + ++ F+ QL+ L L N I+ + + +PKL +LDL SN +
Sbjct: 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 274 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 333
L++++L + + + S+ F N+ + L+ + L +L LF D + L L L N +
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHI 124
Query: 334 KYLPENLFESLKELYTLNLKNNQL-----ENITSLVGLSGLNSLDLSWNQLEQINLIAFD 388
+ N FE + +L L L NQ+ E I L L LDLS N+L+++ L
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184
Query: 389 GL 390
L
Sbjct: 185 KL 186
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 160/349 (45%), Gaps = 43/349 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L +N N +T++ + + KL + + +N +A + P NLT+L L L +NQ+
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
++ N+ NL L++S N IS + + S L LQ +SN+ A +
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFSSNQVTDLKP--LANLTT 174
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
L+ + IS +K S + A L L ++I + I+++ P + TN+ + L G+
Sbjct: 175 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 227
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
K + +L S L L+L N++ L L +L L L NQ+ NI+ L
Sbjct: 228 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 365 GLSGLNSLDLSWNQLEQINLIA-----------FDGLSSLNTVDLSHNLLTFDEYQYGYS 413
GL+ L +L+L+ NQLE I+ I+ F+ +S ++ V L Y S
Sbjct: 281 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 340
Query: 414 PLKQCVNLETIN---LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
+ NL IN +N+IS L ++++T + +L L ++ P
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 387
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
D ++ L+ R +K + E L L +N NNQL +IT L L+ L + ++ NQ
Sbjct: 39 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ I +A L++L + L +N +T PLK NL + LS N IS +
Sbjct: 97 IADITPLA--NLTNLTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNTISDI--SA 146
Query: 439 ISSMTSLKELDLRHNNFS 456
+S +TSL++L+ N +
Sbjct: 147 LSGLTSLQQLNFSSNQVT 164
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQIN 383
L+L N L++L F S EL L+L +++ I + LS L++L L+ N ++ +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 384 LIAFDGLSSLNT-VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISS 441
L AF GLSSL V + NL + + + P+ L+ +N+++N I S ++ S+
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 442 MTSLKELDLRHNNFSFIP-------DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQ 494
+T+L+ LDL N I Q+ + + N I + + +K A
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 208
Query: 495 DPNEDSTM------VARSANIVILNDNPIACNCSNYD-LIRFVSKKMTK 536
D N+ ++ S + L+ NP C+C D L R+++K K
Sbjct: 209 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 257
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
EI + ++ L +L L GN I L G F + LQ L ++A ++ +
Sbjct: 64 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 123
Query: 173 LTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF--YA 229
L +L+ LN+ HN + + F+N+ NL LD+S N I S +DLR L
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLN 180
Query: 230 NSNRFQMFPKDLF--AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
S + P + K +++ +++ + LK +P G+F L L + L
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 232
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
S + L+L N L +L F + P L+ LD+S I + G + L L T N
Sbjct: 30 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 235 QMFPKDLFAEMKYLQ-VIKISYHKDSLKELPSGLFANLPLLNTV--ILGESSIAELPSDL 291
Q F+ + LQ ++ + + SL+ P G L LN ++ + E S+L
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 292 F------WNSTNITNIVLTGHKKLTSLPSTL-----------------FRDCKKLVKLEL 328
+S I +I T + L +P F++ +L +L L
Sbjct: 150 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELAL 208
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNN 355
N+LK +P+ +F+ L L + L N
Sbjct: 209 DTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
++L+L N + L S F P+LQVLDL ++ ++ +++L+ L L L N + +
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP-KDLFAEMKY 247
L F+ + +L+ L N++ L + L+ L+ N Q F + F+ +
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 248 LQVIKISYHK 257
L+ + +S +K
Sbjct: 152 LEHLDLSSNK 161
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
+ + L N+I + G F KL+ +DL +N ++ + P+ F+ L SL L L N++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
L +++F + +L+ L ++ N I+ L F DL L N+ Q K F+ ++
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 248 LQVIKIS 254
+Q + ++
Sbjct: 154 IQTMHLA 160
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
++ RG +TE+ + + + + +++ L N + + P F LR ++L +NQ+ L
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQV 250
F + +L SL + GN I+ LP +F L LQ N+N+ D F ++ L +
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132
Query: 251 IKISYHKDSLKELPSGLFANLPLLNTVILGE 281
+S + + L+ + G F+ L + T+ L +
Sbjct: 133 --LSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 89 VGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQY 148
+ V+ P F ++ I LS+N +I+ L D F+G L SL L GN ITEL +F+
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102
Query: 149 VPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
+ LQ+L L +N + + + F++L +L +L+L N+L + + F+ + ++++ ++ N
Sbjct: 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Query: 250 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 309
+ +I ++++K +P G F+ L + L + I+EL D F ++ ++VL G+K +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-I 92
Query: 310 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLS 367
T LP +LF L L L NK+ L + F+ L L L+L +N+L+ I + L
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 368 GLNSLDLSWN 377
+ ++ L+ N
Sbjct: 153 AIQTMHLAQN 162
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 203 LDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKE 262
+D G ++ +P+ + + +++ N ++ P F+ K L+ I +S + + E
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIRL---EQNTIKVIPPGAFSPYKKLRRIDLS--NNQISE 70
Query: 263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 322
L F L LN+++L + I ELP LF ++ ++L + K+ L F+D
Sbjct: 71 LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHN 129
Query: 323 LVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
L L L NKL+ + + F L+ + T++L N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 89 VGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQY 148
+ L+P F GL + ++L NK IT L K +F+G L+ L L N I L FQ
Sbjct: 68 ISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126
Query: 149 VPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
+ L +L L N + + F L +++ ++L N I
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 25/105 (23%)
Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 359
NIV K LT +P+ L + + ++ L++N +K +P F K+L
Sbjct: 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKL------------ 58
Query: 360 ITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
+DLS NQ+ ++ AF GL SLN++ L N +T
Sbjct: 59 ----------RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CPA C C S V+C LT +P LP T ++ L N+I
Sbjct: 5 CPAACTC------SNNIVDCRGKGLTEIPTNLPETI-------TEIRLEQNTIKVIPPGA 51
Query: 634 PESYKLITDLDLSYNNISHV 653
YK + +DLS N IS +
Sbjct: 52 FSPYKKLRRIDLSNNQISEL 71
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQIN 383
L+L N L++L F S EL L+L +++ I + LS L++L L+ N ++ +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 384 LIAFDGLSSLNT-VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISS 441
L AF GLSSL V + NL + + + P+ L+ +N+++N I S ++ S+
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 442 MTSLKELDLRHNNFSFIP-------DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQ 494
+T+L+ LDL N I Q+ + + N I + + +K A
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 209
Query: 495 DPNEDSTM------VARSANIVILNDNPIACNCSNYD-LIRFVSKKMTK 536
D N+ ++ S + L+ NP C+C D L R+++K K
Sbjct: 210 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 258
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
EI + ++ L +L L GN I L G F + LQ L ++A ++ +
Sbjct: 65 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 124
Query: 173 LTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF--YA 229
L +L+ LN+ HN + + F+N+ NL LD+S N I S +DLR L
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLN 181
Query: 230 NSNRFQMFPKDLF--AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
S + P + K +++ +++ + LK +P G+F L L + L
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 233
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
S + L+L N L +L F + P L+ LD+S I + G + L L T N
Sbjct: 31 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 235 QMFPKDLFAEMKYLQ-VIKISYHKDSLKELPSGLFANLPLLNTV--ILGESSIAELPSDL 291
Q F+ + LQ ++ + + SL+ P G L LN ++ + E S+L
Sbjct: 91 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Query: 292 F------WNSTNITNIVLTGHKKLTSLPSTL-----------------FRDCKKLVKLEL 328
+S I +I T + L +P F++ +L +L L
Sbjct: 151 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELAL 209
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNN 355
N+LK +P+ +F+ L L + L N
Sbjct: 210 DTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
++L+L N + L S F P+LQVLDL ++ ++ +++L+ L L L N + +
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP-KDLFAEMKY 247
L F+ + +L+ L N++ L + L+ L+ N Q F + F+ +
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 248 LQVIKISYHK 257
L+ + +S +K
Sbjct: 153 LEHLDLSSNK 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQIN 383
L+L N L++L F S EL L+L +++ I + LS L++L L+ N ++ +
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 384 LIAFDGLSSLNT-VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISS 441
L AF GLSSL V + NL + + + P+ L+ +N+++N I S ++ S+
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 442 MTSLKELDLRHNNFSFIP-------DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQ 494
+T+L+ LDL N I Q+ + + N I + + +K A
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 208
Query: 495 DPNEDSTM------VARSANIVILNDNPIACNCSNYD-LIRFVSKKMTK 536
D N+ ++ S + L+ NP C+C D L R+++K K
Sbjct: 209 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 257
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
EI + ++ L +L L GN I L G F + LQ L ++A ++ +
Sbjct: 64 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 123
Query: 173 LTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF--YA 229
L +L+ LN+ HN + + F+N+ NL LD+S N I S +DLR L
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLN 180
Query: 230 NSNRFQMFPKDLF--AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
S + P + K +++ +++ + LK +P G+F L L + L
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 232
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
S + L+L N L +L F + P L+ LD+S I + G + L L T N
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 235 QMFPKDLFAEMKYLQ-VIKISYHKDSLKELPSGLFANLPLLNTV--ILGESSIAELPSDL 291
Q F+ + LQ ++ + + SL+ P G L LN ++ + E S+L
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 292 F------WNSTNITNIVLTGHKKLTSLPSTL-----------------FRDCKKLVKLEL 328
+S I +I T + L +P F++ +L +L L
Sbjct: 150 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELAL 208
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNN 355
N+LK +P+ +F+ L L + L N
Sbjct: 209 DTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
++L+L N + L S F P+LQVLDL ++ ++ +++L+ L L L N + +
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP-KDLFAEMKY 247
L F+ + +L+ L N++ L + L+ L+ N Q F + F+ +
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 248 LQVIKISYHK 257
L+ + +S +K
Sbjct: 152 LEHLDLSSNK 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 23/229 (10%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQIN 383
L+L N L++L F S EL L+L +++ I + LS L++L L+ N ++ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 384 LIAFDGLSSLNT-VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISS 441
L AF GLSSL V + NL + + + G+ LK L+ +N+++N I S ++ S+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGH--LK---TLKELNVAHNLIQSFKLPEYFSN 147
Query: 442 MTSLKELDLRHNNFSFIP-------DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQ 494
+T+L+ LDL N I Q+ + + N I + + +K A
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207
Query: 495 DPNEDSTM------VARSANIVILNDNPIACNCSNYD-LIRFVSKKMTK 536
D N+ ++ S + L+ NP C+C D L R+++K K
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 256
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
EI + ++ L +L L GN I L G F + LQ L ++A ++ +
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 173 LTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF--YA 229
L +L+ LN+ HN + + F+N+ NL LD+S N I S +DLR L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLN 179
Query: 230 NSNRFQMFPKDLF--AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
S + P + K +++ +++ + LK +P G+F L L + L
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
S + L+L N L +L F + P L+ LD+S I + G + L L T N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 235 QMFPKDLFAEMKYLQ-VIKISYHKDSLKELPSGLFANLPLLNTV--ILGESSIAELPSDL 291
Q F+ + LQ ++ + + SL+ P G L LN ++ + E S+L
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 292 F------WNSTNITNIVLTGHKKLTSLPSTL-----------------FRDCKKLVKLEL 328
+S I +I T + L +P F++ +L +L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELAL 207
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNN 355
N+LK +P+ +F+ L L + L N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
++L+L N + L S F P+LQVLDL ++ ++ +++L+ L L L N + +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP-KDLFAEMKY 247
L F+ + +L+ L N++ L + L+ L+ N Q F + F+ +
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 248 LQVIKISYHK 257
L+ + +S +K
Sbjct: 151 LEHLDLSSNK 160
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
+++ G S+ + +G+ QVL L N + ++P +F LT L L+LD+NQL L
Sbjct: 13 TVDCSGKSLASVPTGIPTTT---QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 190 TRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
+F+ + L L ++ N + +P G F +L+ L + +N + D+ +++
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335
TV S+A +P+ + T ++ ++T L +F +L +L+L N+L
Sbjct: 13 TVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 336 LPENLFESLKELYTLNLKNNQLENI 360
LP +F+ L +L L+L +NQL++I
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSI 93
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
SL +P+G+ +L L ++ I +L +F T +T + L + +LT LP+ +F
Sbjct: 20 SLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFD 75
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS 362
+L +L L N+LK +P F++LK L + L NN + S
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 99 GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG 158
G+ +L ++ +IT L +F QL L+L N +T L +GVF + +L L L
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 159 SNDVAYMDPEIFKNLTSL 176
N + + F NL SL
Sbjct: 87 DNQLKSIPRGAFDNLKSL 104
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
S + T + +G K L S+P+ + + L L N++ L +F+ L +L L+L N
Sbjct: 8 SCSGTTVDCSG-KSLASVPTGIPTTTQVLY---LYDNQITKLEPGVFDRLTQLTRLDLDN 63
Query: 355 NQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
NQL + + V L+ L L L+ NQL+ I AFD L SL + L +N
Sbjct: 64 NQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 202 SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK 261
++D SG +++ +P+G+ + Q Y N+ +F + Q+ ++ + L
Sbjct: 13 TVDCSGKSLASVPTGIPT---TTQVLYLYDNQITKLEPGVFDRLT--QLTRLDLDNNQLT 67
Query: 262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 303
LP+G+F L L + L ++ + +P F N ++T+I L
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CP++C C S +V+CS SL +P +P T + L L++N I
Sbjct: 3 CPSQCSC------SGTTVDCSGKSLASVPTGIPTTTQ-------VLYLYDNQITKLEPGV 49
Query: 634 PESYKLITDLDLSYNNIS 651
+ +T LDL N ++
Sbjct: 50 FDRLTQLTRLDLDNNQLT 67
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
+ + L N+I + G F KL+ +DL +N ++ + P+ F+ L SL L L N++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
L +++F + +L+ L ++ N I+ L F DL L N+ Q K F+ ++
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 248 LQVIKIS 254
+Q + ++
Sbjct: 154 IQTMHLA 160
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
++ RG +TE+ + + + + +++ L N + + P F LR ++L +NQ+ L
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQV 250
F + +L SL + GN I+ LP +F L LQ N+N+ D F ++ L +
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNL 132
Query: 251 IKISYHKDSLKELPSGLFANLPLLNTVILGE 281
+S + + L+ + G F+ L + T+ L +
Sbjct: 133 --LSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 89 VGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQY 148
+ V+ P F ++ I LS+N +I+ L D F+G L SL L GN ITEL +F+
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102
Query: 149 VPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
+ LQ+L L +N + + + F++L +L +L+L N+L + + F+ + ++++ ++ N
Sbjct: 103 LFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Query: 250 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 309
+ +I ++++K +P G F+ L + L + I+EL D F ++ ++VL G+K +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-I 92
Query: 310 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLS 367
T LP +LF L L L NK+ L + F+ L L L+L +N+L+ I + L
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 368 GLNSLDLSWN 377
+ ++ L+ N
Sbjct: 153 AIQTMHLAQN 162
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 203 LDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKE 262
+D G ++ +P+ + + +++ N ++ P F+ K L+ I +S + + E
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIRL---EQNTIKVIPPGAFSPYKKLRRIDLS--NNQISE 70
Query: 263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 322
L F L LN+++L + I ELP LF ++ ++L + K+ L F+D
Sbjct: 71 LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINXLRVDAFQDLHN 129
Query: 323 LVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
L L L NKL+ + + F L+ + T++L N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 89 VGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQY 148
+ L+P F GL + ++L NK IT L K +F+G L+ L L N I L FQ
Sbjct: 68 ISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQD 126
Query: 149 VPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
+ L +L L N + + F L +++ ++L N I
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 25/105 (23%)
Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 359
NIV K LT +P+ L + + ++ L++N +K +P F K+L
Sbjct: 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKL------------ 58
Query: 360 ITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
+DLS NQ+ ++ AF GL SLN++ L N +T
Sbjct: 59 ----------RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CPA C C S V+C LT +P LP T ++ L N+I
Sbjct: 5 CPAACTC------SNNIVDCRGKGLTEIPTNLPETI-------TEIRLEQNTIKVIPPGA 51
Query: 634 PESYKLITDLDLSYNNISHV 653
YK + +DLS N IS +
Sbjct: 52 FSPYKKLRRIDLSNNQISEL 71
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
+++ G S+ + +G+ QVL L N + ++P +F LT L L+LD+NQL L
Sbjct: 21 TVDCSGKSLASVPTGIPTTT---QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 77
Query: 190 TRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
+F+ + L L ++ N + +P G F +L+ L + +N + D+ +++
Sbjct: 78 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 136
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335
TV S+A +P+ + T ++ ++T L +F +L +L+L N+L
Sbjct: 21 TVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 336 LPENLFESLKELYTLNLKNNQLENI 360
LP +F+ L +L L+L +NQL++I
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSI 101
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
SL +P+G+ +L L ++ I +L +F T +T + L + +LT LP+ +F
Sbjct: 28 SLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFD 83
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS 362
+L +L L N+LK +P F++LK L + L NN + S
Sbjct: 84 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 127
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 99 GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG 158
G+ +L ++ +IT L +F QL L+L N +T L +GVF + +L L L
Sbjct: 35 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 94
Query: 159 SNDVAYMDPEIFKNLTSL 176
N + + F NL SL
Sbjct: 95 DNQLKSIPRGAFDNLKSL 112
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
S + T + +G K L S+P+ + + L L N++ L +F+ L +L L+L N
Sbjct: 16 SCSGTTVDCSG-KSLASVPTGIPTTTQVLY---LYDNQITKLEPGVFDRLTQLTRLDLDN 71
Query: 355 NQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
NQL + + V L+ L L L+ NQL+ I AFD L SL + L +N
Sbjct: 72 NQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 202 SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK 261
++D SG +++ +P+G+ + Q Y N+ +F + Q+ ++ + L
Sbjct: 21 TVDCSGKSLASVPTGIPT---TTQVLYLYDNQITKLEPGVFDRLT--QLTRLDLDNNQLT 75
Query: 262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 303
LP+G+F L L + L ++ + +P F N ++T+I L
Sbjct: 76 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CP++C C S +V+CS SL +P +P T + L L++N I
Sbjct: 11 CPSQCSC------SGTTVDCSGKSLASVPTGIPTTTQ-------VLYLYDNQITKLEPGV 57
Query: 634 PESYKLITDLDLSYNNIS 651
+ +T LDL N ++
Sbjct: 58 FDRLTQLTRLDLDNNQLT 75
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 44/349 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L +N N +T++ + + KL + + +N +A + P NLT+L L L +NQ+
Sbjct: 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
++ N+ NL L++S N IS + + S L LQ + + P A +
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKP---LANLTT 178
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
L+ + IS +K S + A L L ++I + I+++ P + TN+ + L G+
Sbjct: 179 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 231
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
K + +L S L L+L N++ L L +L L L NQ+ NI+ L
Sbjct: 232 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 284
Query: 365 GLSGLNSLDLSWNQLEQINLIA-----------FDGLSSLNTVDLSHNLLTFDEYQYGYS 413
GL+ L +L+L+ NQLE I+ I+ F+ +S ++ V L Y S
Sbjct: 285 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 344
Query: 414 PLKQCVNLETIN---LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
+ NL IN +N+IS L ++++T + +L L ++ P
Sbjct: 345 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAF 387
LQ ++L + E L L +N NNQL +IT L L+ L + ++ NQ+ I +A
Sbjct: 51 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA- 109
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE 447
L++L + L +N +T PLK NL + LS N IS + +S +TSL++
Sbjct: 110 -NLTNLTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQ 160
Query: 448 L 448
L
Sbjct: 161 L 161
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 44/349 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L +N N +T++ + + KL + + +N +A + P NLT+L L L +NQ+
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
++ N+ NL L++S N IS + + S L LQ + + P A +
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFGNQVTDLKP---LANLTT 173
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
L+ + IS +K S + A L L ++I + I+++ P + TN+ + L G+
Sbjct: 174 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 226
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
K + +L S L L+L N++ L L +L L L NQ+ NI+ L
Sbjct: 227 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 279
Query: 365 GLSGLNSLDLSWNQLEQINLIA-----------FDGLSSLNTVDLSHNLLTFDEYQYGYS 413
GL+ L +L+L+ NQLE I+ I+ F+ +S ++ V L Y S
Sbjct: 280 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 339
Query: 414 PLKQCVNLETINL---SYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
+ NL IN +N+IS L ++++T + +L L ++ P
Sbjct: 340 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 386
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
D ++ L+ R +K + E L L +N NNQL +IT L L+ L + ++ NQ
Sbjct: 39 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ I +A L++L + L +N +T PLK NL + LS N IS +
Sbjct: 97 IADITPLA--NLTNLTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNTISDI--SA 146
Query: 439 ISSMTSLKELDLRH 452
+S +TSL++L+ +
Sbjct: 147 LSGLTSLQQLNFGN 160
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 24/196 (12%)
Query: 54 TFTFCPLPDENFISLFSKLNITTINTLAFSN--SPSNVGVLSPPYFD------------- 98
F+ LP F+ L + N L+F S S+ G S Y D
Sbjct: 340 AFSEVDLPSLEFLDL-------SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392
Query: 99 -GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDL 157
GL ++H+ H+ +F L L++ ++G+F + L+VL +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 158 GSNDVAY-MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
N P+IF L +L L+L QL L+ FN++ +L+ L+++ N + +P G
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512
Query: 217 VFSDLRKLQTFYANSN 232
+F L LQ + ++N
Sbjct: 513 IFDRLTSLQKIWLHTN 528
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
++L+L N + L S F P+LQVLDL ++ ++ +++L+ L L L N + +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP-KDLFAEMKY 247
L F+ + +L+ L N++ L + L+ L+ N Q F + F+ +
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 248 LQVIKISYHK 257
L+ + +S +K
Sbjct: 151 LEHLDLSSNK 160
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 30/253 (11%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
S + L+L N L +L F + P L+ LD+S I + G + L L T N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 235 QMFPKDLFAEMKYLQ-VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
Q F+ + LQ ++ + + SL+ P G L LN S +LP + F
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLP-EYFS 146
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKL----VKLELQRNKLKYLPENLFESLKELYT 349
N TN+ ++ L+ + K+ S+ T R ++ + L+L N + ++ F+ ++ L+
Sbjct: 147 NLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHK 204
Query: 350 LNLKNNQLENI----TSLVGLSGLNSLDLSWNQ------LEQINLIAFDGLSSLNTVDLS 399
L L+NN +++ T + GL+GL L + LE+ + A +GL +
Sbjct: 205 LTLRNN-FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN------- 256
Query: 400 HNLLTFDEYQYGY 412
LT +E++ Y
Sbjct: 257 ---LTIEEFRLAY 266
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL-ENITS--LVGLSGLNS 371
++F + L+ L++ + +F L L L + N EN L L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
LDLS QLEQ++ AF+ LSSL ++++ N L
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 316 LFRDCKKLVKLELQRNKLK--YLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNS 371
+F L L++ N + +LP+ +F L+ L L+L QLE + T+ LS L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L+++ NQL+ + FD L+SL + L N
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 103/246 (41%), Gaps = 40/246 (16%)
Query: 140 ELYSGVFQYVPKLQV-----LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI---NLTR 191
EL + F P L++ L SN E+ +L SL L+L N L ++
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 192 AIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF-YANSNRFQMFPKDLFAEMKYLQV 250
+ F +L+ LD+S N + I S F L +L+ + +SN QM +F ++ L
Sbjct: 368 SDFGTT-SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 251 IKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310
+ IS+ + +G+F L L + + +S E
Sbjct: 426 LDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQE-----------------------N 460
Query: 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLN 370
LP +F + + L L+L + +L+ L F SL L LN+ +NQL+++ + L
Sbjct: 461 FLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI-FDRLT 518
Query: 371 SLDLSW 376
SL W
Sbjct: 519 SLQKIW 524
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
++N + S+ + +G+ QVL L N + ++P +F +LT L LNL NQL L
Sbjct: 23 TVNCQERSLASVPAGIPTTT---QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTAL 79
Query: 190 TRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLF 242
+F+ + L L + N + +P GVF +L+ L Y +N + D+
Sbjct: 80 PVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDIL 132
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
T+ ++L+L NQ+ L +F+++ L L+++ N ++ LP GVF L KL + N+
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQ 99
Query: 234 FQMFPKDLFAEMKYL 248
+ P +F +K L
Sbjct: 100 LKSIPMGVFDNLKSL 114
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 253 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 312
++ + SL +P+G+ +L+ I + I +L +F + T +T + L +LT+L
Sbjct: 24 VNCQERSLASVPAGIPTTTQVLHLYI---NQITKLEPGVFDSLTQLTYLNL-AVNQLTAL 79
Query: 313 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
P +F KL L L N+LK +P +F++LK L + L NN
Sbjct: 80 PVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 99 GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG 158
G+ +L + +IT L +F QL LNL N +T L GVF + KL L L
Sbjct: 37 GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALH 96
Query: 159 SNDVAYMDPEIFKNLTSL 176
N + + +F NL SL
Sbjct: 97 INQLKSIPMGVFDNLKSL 114
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQIN 383
L L N++ L +F+SL +L LNL NQL + V L+ L L L NQL+ I
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 384 LIAFDGLSSLNTVDLSHN 401
+ FD L SL + L +N
Sbjct: 105 MGVFDNLKSLTHIYLFNN 122
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335
TV E S+A +P+ + +T + ++ + ++T L +F +L L L N+L
Sbjct: 23 TVNCQERSLASVPAGIP-TTTQVLHLYI---NQITKLEPGVFDSLTQLTYLNLAVNQLTA 78
Query: 336 LPENLFESLKELYTLNLKNNQLENI 360
LP +F+ L +L L L NQL++I
Sbjct: 79 LPVGVFDKLTKLTHLALHINQLKSI 103
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 99/434 (22%), Positives = 177/434 (40%), Gaps = 91/434 (20%)
Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI-- 178
IFKG L+ +++ L+ G F+ D Y+ F+ L + +
Sbjct: 217 IFKG--------LQNSTLQSLWLGTFE-----------DTDDQYLTSATFEGLCDMSVES 257
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
+NL ++ +L+ + F ++ LD++ +++ LPSG+ + L+ N+N F
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGI-EGMNSLKKLVLNANSFDQLC 316
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSG--LFANLPLLNTVILGESSIAELPSDLFWNST 296
+ A L+ + Y K ++++L G L L + L S I ++
Sbjct: 317 QINAASFPSLRDL---YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIE---------AS 364
Query: 297 NITNIVLTGHKKLT----------SLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLK 345
+ N+ L + L L F++C +L L++ L P + F++L
Sbjct: 365 DCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLH 424
Query: 346 ELYTLNLKNNQLE--NITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
L LNL + L+ N L GL L L+L N + DG S++ +L
Sbjct: 425 LLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ-------DG--SISKTNL----- 470
Query: 404 TFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD 463
L+ +LE + LS + S+ + ++ LDL HN S D +D
Sbjct: 471 -----------LQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHN--SLTGDSMD 517
Query: 464 SIVSNK-LTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS 522
++ K L L+++ N I I+ L A +Q +I+ L+ NP+ C CS
Sbjct: 518 ALSHLKGLYLNMASNNIRIIPPHLL--PALSQQ------------SIINLSHNPLDCTCS 563
Query: 523 NYDLIRFVSKKMTK 536
N I + + + K
Sbjct: 564 NIHFITWYKENLHK 577
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 321 KKLVKLELQRNKLKYLPENLFESLKEL--YTLNLKNNQLENITSLVGLSGL-NSLDLSWN 377
+ L L+ Q N + Y+ SL++ +LN N ++ I +S + SL +
Sbjct: 152 QNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGIEPGAFISKIFQSLKFGGS 211
Query: 378 QLEQINL-IAFDGL--SSLNTVDLSHNLLTFDEYQYGYSPLKQC-VNLETINLSYNRISS 433
+NL I F GL S+L ++ L T D+Y + C +++E+INL +R S
Sbjct: 212 ----LNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSD 267
Query: 434 LFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS-NKLTLDL-SFNQIAIVD------LR 485
L T ++ELDL + + +P ++ + S KL L+ SF+Q+ ++ LR
Sbjct: 268 LSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLR 327
Query: 486 TLEIKA 491
L IK
Sbjct: 328 DLYIKG 333
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI 178
+ F G + L+L NS+T ++ L L++ SN++ + P + L+ I
Sbjct: 492 QQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSI 550
Query: 179 LNLDHNQL 186
+NL HN L
Sbjct: 551 INLSHNPL 558
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 121 IFKGTPQLESLNLRGNSITE-LYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
IF G LE L + GNS E +F + L LDL + + P F +L+SL++L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
N+ HN +L + + +L+ LD S N+I
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 18/255 (7%)
Query: 209 NISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF 268
++ +P+G+ S +L+ SN+ Q P +F ++ L + +S + S K S
Sbjct: 18 GLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74
Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLVKLE 327
L + L + + + S+ F + ++ H L + ++F + L+ L+
Sbjct: 75 FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ-HSNLKQMSEFSVFLSLRNLIYLD 132
Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQL-ENITS--LVGLSGLNSLDLSWNQLEQINL 384
+ + +F L L L + N EN L L LDLS QLEQ++
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 385 IAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVN-LETINLSYNRISSLFDDWISSM 442
AF+ LSSL +++SH N + D + Y +C+N L+ ++ S N I + +
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPY------KCLNSLQVLDYSLNHIMTSKKQELQHF 246
Query: 443 -TSLKELDLRHNNFS 456
+SL L+L N+F+
Sbjct: 247 PSSLAFLNLTQNDFA 261
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 27/219 (12%)
Query: 66 ISLFSKLNITTINTLAFSN--SPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
++ +KL++++ N L+F S S+ G S Y D L F I +S N F
Sbjct: 51 LTQLTKLSLSS-NGLSFKGCCSQSDFGTTSLKYLD-LSFNGVITMSSN----------FL 98
Query: 124 GTPQLESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
G QLE L+ + +++ ++ VF + L LD+ IF L+SL +L +
Sbjct: 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 183 HNQLI-NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL 241
N N IF + NL LD+S + L F+ L LQ + N F F D
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDT 216
Query: 242 F--AEMKYLQVIKISYH------KDSLKELPSGL-FANL 271
F + LQV+ S + K L+ PS L F NL
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F+GL ++ + ++ N DIF L L+L + +L F + LQVL+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVP-NLRSLDISGNNIS 211
+ N+ +D +K L SL++L+ N ++ + + P +L L+++ N+ +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 153/356 (42%), Gaps = 49/356 (13%)
Query: 114 ITGLHKDIFKGTPQLESLNLRGN-SITELYSGVFQYVPKLQV--LDLGS----NDVAYMD 166
I + F+G +L L LRGN + + + Q + L V L LG ++ +
Sbjct: 193 IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251
Query: 167 PEIFKNLTSLRI--LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
P I + L + I L + + F+ + N+ ++ ++G +I L K
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKW 309
Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK----ELPSGLFANLPLLNTVILG 280
Q+ + + FP ++ +L+ + ++ +K S+ LPS + +L G
Sbjct: 310 QSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 366
Query: 281 ESSIAELPS------DLFWNSTNITNIVLTGHKKLTSLP---STL--------FRDCKKL 323
S ++L + DL +N I + G ++L L STL F +KL
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426
Query: 324 VKLELQRNKLKYLPENLFESLKELYTLNL-----KNNQLENITSLVGLSGLNSLDLSWNQ 378
+ L++ K + +F L L TL + K+N L N+ + L LDLS Q
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV--FANTTNLTFLDLSKCQ 484
Query: 379 LEQINLIAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
LEQI+ FD L L +++SH NLL D Y Q +L T++ S+NRI +
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-----QLYSLSTLDCSFNRIET 535
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 121 IFKGTPQLESLNLRGNSITE-LYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
IF G L +L + GNS + S VF L LDL + + +F L L++L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY 228
N+ HN L+ L + +N + +L +LD S N I G+ K F+
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFF 550
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 88 NVGVLSPPYFDGLHFVKHILLSHN--KEITGLHKDIFKGTPQLESLNLRGNSITELYSGV 145
N ++ F GL ++H+ H+ K +T F +L L++ + + G+
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTNTKIDFDGI 443
Query: 146 FQYVPKLQVLDLGSNDVAYMD---PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRS 202
F + L L + N ++ D +F N T+L L+L QL ++ +F+ + L+
Sbjct: 444 FLGLTSLNTLKMAGN--SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501
Query: 203 LDISGNNISILPSGVFSDLRKLQTFYANSNR-------FQMFPKDL 241
L++S NN+ L S ++ L L T + NR Q FPK L
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
++F T L L+L + ++ GVF + +LQ+L++ N++ ++D + L SL L
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526
Query: 180 NLDHNQLINLTRAIFNNVP-NLRSLDISGNNISIL 213
+ N+ I ++ I + P +L +++ N+++ +
Sbjct: 527 DCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACI 560
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 98/212 (46%), Gaps = 20/212 (9%)
Query: 281 ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL 340
+ ++++P D+ ++ NI L L S F + +L L+L R +++ + +
Sbjct: 20 DQKLSKVPDDIPSSTKNID----LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75
Query: 341 FESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
+ L L L L N +++ + S GL+ L +L +L + L +L +++
Sbjct: 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135
Query: 399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE-------LDLR 451
+HN + + +S L NL ++LSYN I ++ ++ + L+E LD+
Sbjct: 136 AHNFIHSCKLPAYFSNL---TNLVHVDLSYNYIQTI---TVNDLQFLRENPQVNLSLDMS 189
Query: 452 HNNFSFIPDQ-LDSIVSNKLTLDLSFNQIAIV 482
N FI DQ I ++LTL +FN I+
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIM 221
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
EI + + G L +L L GN I G F + L+ L +A ++
Sbjct: 67 EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126
Query: 173 LTSLRILNLDHNQLINLTR--AIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
L +L+ LN+ HN I+ + A F+N+ NL +D+S N I + LR+
Sbjct: 127 LITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 10/204 (4%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
+S + ++L N L L F+N L+ LD+S I + + L L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 234 FQMFPKDLFAEMKYLQ-VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF 292
Q F F+ + L+ ++ + SL+ P G L LN V +LP+ F
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN-VAHNFIHSCKLPA-YF 149
Query: 293 WNSTNITNIVLTGH--KKLTSLPSTLFRDCKKL-VKLELQRNKLKYLPENLFESLKELYT 349
N TN+ ++ L+ + + +T R+ ++ + L++ N + ++ + F+ +K L+
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHE 208
Query: 350 LNLKNN-QLENI--TSLVGLSGLN 370
L L+ N NI T L L+GL+
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLH 232
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 153/356 (42%), Gaps = 49/356 (13%)
Query: 114 ITGLHKDIFKGTPQLESLNLRGN-SITELYSGVFQYVPKLQV--LDLGS----NDVAYMD 166
I + F+G +L L LRGN + + + Q + L V L LG ++ +
Sbjct: 188 IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 246
Query: 167 PEIFKNLTSLRI--LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
P I + L + I L + + F+ + N+ ++ ++G +I L K
Sbjct: 247 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKW 304
Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK----ELPSGLFANLPLLNTVILG 280
Q+ + + FP ++ +L+ + ++ +K S+ LPS + +L G
Sbjct: 305 QSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 361
Query: 281 ESSIAELPS------DLFWNSTNITNIVLTGHKKLTSLP---STL--------FRDCKKL 323
S ++L + DL +N I + G ++L L STL F +KL
Sbjct: 362 CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 421
Query: 324 VKLELQRNKLKYLPENLFESLKELYTLNL-----KNNQLENITSLVGLSGLNSLDLSWNQ 378
+ L++ K + +F L L TL + K+N L N+ + L LDLS Q
Sbjct: 422 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV--FANTTNLTFLDLSKCQ 479
Query: 379 LEQINLIAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
LEQI+ FD L L +++SH NLL D Y Q +L T++ S+NRI +
Sbjct: 480 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-----QLYSLSTLDCSFNRIET 530
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 121 IFKGTPQLESLNLRGNSITE-LYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
IF G L +L + GNS + S VF L LDL + + +F L L++L
Sbjct: 438 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 497
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY 228
N+ HN L+ L + +N + +L +LD S N I G+ K F+
Sbjct: 498 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFF 545
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 88 NVGVLSPPYFDGLHFVKHILLSHN--KEITGLHKDIFKGTPQLESLNLRGNSITELYSGV 145
N ++ F GL ++H+ H+ K +T F +L L++ + + G+
Sbjct: 381 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTNTKIDFDGI 438
Query: 146 FQYVPKLQVLDLGSNDVAYMD---PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRS 202
F + L L + N ++ D +F N T+L L+L QL ++ +F+ + L+
Sbjct: 439 FLGLTSLNTLKMAGN--SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 496
Query: 203 LDISGNNISILPSGVFSDLRKLQTFYANSNR-------FQMFPKDL 241
L++S NN+ L S ++ L L T + NR Q FPK L
Sbjct: 497 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 542
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
++F T L L+L + ++ GVF + +LQ+L++ N++ ++D + L SL L
Sbjct: 462 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 521
Query: 180 NLDHNQLINLTRAIFNNVP-NLRSLDISGNNISIL 213
+ N+ I ++ I + P +L +++ N+++ +
Sbjct: 522 DCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACI 555
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 98/212 (46%), Gaps = 20/212 (9%)
Query: 281 ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL 340
+ ++++P D+ ++ NI L L S F + +L L+L R +++ + +
Sbjct: 15 DQKLSKVPDDIPSSTKNID----LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 70
Query: 341 FESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
+ L L L L N +++ + S GL+ L +L +L + L +L +++
Sbjct: 71 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 130
Query: 399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE-------LDLR 451
+HN + + +S L NL ++LSYN I ++ ++ + L+E LD+
Sbjct: 131 AHNFIHSCKLPAYFSNL---TNLVHVDLSYNYIQTI---TVNDLQFLRENPQVNLSLDMS 184
Query: 452 HNNFSFIPDQ-LDSIVSNKLTLDLSFNQIAIV 482
N FI DQ I ++LTL +FN I+
Sbjct: 185 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIM 216
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
EI + + G L +L L GN I G F + L+ L +A ++
Sbjct: 62 EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 121
Query: 173 LTSLRILNLDHNQLINLTR--AIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
L +L+ LN+ HN I+ + A F+N+ NL +D+S N I + LR+
Sbjct: 122 LITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 173
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 10/204 (4%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
+S + ++L N L L F+N L+ LD+S I + + L L N
Sbjct: 27 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 86
Query: 234 FQMFPKDLFAEMKYLQ-VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF 292
Q F F+ + L+ ++ + SL+ P G L LN V +LP+ F
Sbjct: 87 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN-VAHNFIHSCKLPA-YF 144
Query: 293 WNSTNITNIVLTGH--KKLTSLPSTLFRDCKKL-VKLELQRNKLKYLPENLFESLKELYT 349
N TN+ ++ L+ + + +T R+ ++ + L++ N + ++ + F+ +K L+
Sbjct: 145 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHE 203
Query: 350 LNLKNN-QLENI--TSLVGLSGLN 370
L L+ N NI T L L+GL+
Sbjct: 204 LTLRGNFNSSNIMKTCLQNLAGLH 227
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 121 IFKGTPQLESLNLRGNSITE-LYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
IF G LE L + GNS E +F + L LDL + + P F +L+SL++L
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
N+ HN +L + + +L+ LD S N+I
Sbjct: 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL-ENITS--LVGLSGLNS 371
++F + L+ L++ + +F L L L + N EN L L
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVN-LETINLSYN 429
LDLS QLEQ++ AF+ LSSL +++SH N + D + Y +C+N L+ ++ S N
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY------KCLNSLQVLDYSLN 552
Query: 430 RISSLFDDWISSM-TSLKELDLRHNNFS 456
I + + +SL L+L N+F+
Sbjct: 553 HIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 95/231 (41%), Gaps = 33/231 (14%)
Query: 54 TFTFCPLPDENFISLFSKLNITTINTLAFSN--SPSNVGVLSPPYFDGLHFVKHILLSHN 111
F+ LP F+ L + N L+F S S+ G +S Y D L F I +S N
Sbjct: 364 AFSEVDLPSLEFLDL-------SRNGLSFKGCCSQSDFGTISLKYLD-LSFNGVITMSSN 415
Query: 112 KEITGLHKDIFKGTPQLESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIF 170
F G QLE L+ + +++ ++ VF + L LD+ IF
Sbjct: 416 ----------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465
Query: 171 KNLTSLRILNLDHNQLI-NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
L+SL +L + N N IF + NL LD+S + L F+ L LQ
Sbjct: 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 230 NSNRFQMFPKDLFAE--MKYLQVIKISYH------KDSLKELPSGL-FANL 271
+ N F F D F + LQV+ S + K L+ PS L F NL
Sbjct: 526 SHNNF--FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 146/332 (43%), Gaps = 26/332 (7%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
S + L+L N L +L F + P L+ LD+S I + G + L L T N
Sbjct: 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112
Query: 235 QMFPKDLFAEMKYLQ-VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
Q F+ + LQ ++ + + SL+ P G L LN S +LP + F
Sbjct: 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLP-EYFS 170
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKL----VKLELQRNKLKYLPENLFESLKELYT 349
N TN+ ++ L+ + K+ S+ T R ++ + L+L N + ++ F+ ++ L+
Sbjct: 171 NLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHK 228
Query: 350 LNLKNNQLENI----TSLVGLSGLNSLDLSWNQ------LEQINLIAFDGLSSLNTVDLS 399
L L+NN +++ T + GL+GL L + LE+ + A +GL +L +
Sbjct: 229 LTLRNN-FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF- 286
Query: 400 HNLLTFDEYQYGYSPLKQCV-NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFI 458
L D Y G L C+ N+ + +L I + D S + L+L + F
Sbjct: 287 -RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQF 343
Query: 459 PD-QLDSIVSNKLTLDLSFNQIAIVDLRTLEI 489
P +L S+ T + N + VDL +LE
Sbjct: 344 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 375
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
++L+L N + L S F P+LQVLDL ++ ++ +++L+ L L L N + +
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP-KDLFAEMKY 247
L F+ + +L+ L N++ L + L+ L+ N Q F + F+ +
Sbjct: 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 174
Query: 248 LQVIKISYHK 257
L+ + +S +K
Sbjct: 175 LEHLDLSSNK 184
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F+GL ++ + ++ N DIF L L+L + +L F + LQVL+
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVP-NLRSLDISGNNIS 211
+ N+ +D +K L SL++L+ N ++ + + P +L L+++ N+ +
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 121 IFKGTPQLESLNLRGNSITE-LYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
IF G LE L + GNS E +F + L LDL + + P F +L+SL++L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
N+ HN +L + + +L+ LD S N+I
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL-ENITS--LVGLSGLNS 371
++F + L+ L++ + +F L L L + N EN L L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVN-LETINLSYN 429
LDLS QLEQ++ AF+ LSSL +++SH N + D + Y +C+N L+ ++ S N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY------KCLNSLQVLDYSLN 528
Query: 430 RISSLFDDWISSM-TSLKELDLRHNNFS 456
I + + +SL L+L N+F+
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 17/215 (7%)
Query: 69 FSKLNITTINTLAFS-NSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQ 127
FS++++ ++ L S N S G S F G +K++ LS N IT F G Q
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT--MSSNFLGLEQ 397
Query: 128 LESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
LE L+ + +++ ++ VF + L LD+ IF L+SL +L + N
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 187 I-NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAE- 244
N IF + NL LD+S + L F+ L LQ + N F F D F
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYK 515
Query: 245 -MKYLQVIKISYH------KDSLKELPSGL-FANL 271
+ LQV+ S + K L+ PS L F NL
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 30/253 (11%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
S + L+L N L +L F + P L+ LD+S I + G + L L T N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 235 QMFPKDLFAEMKYLQ-VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
Q F+ + LQ ++ + + SL+ P G L LN S +LP + F
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLP-EYFS 146
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKL----VKLELQRNKLKYLPENLFESLKELYT 349
N TN+ ++ L+ + K+ S+ T R ++ + L+L N + ++ F+ ++ L+
Sbjct: 147 NLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHK 204
Query: 350 LNLKNNQLENI----TSLVGLSGLNSLDLSWNQ------LEQINLIAFDGLSSLNTVDLS 399
L L+NN +++ T + GL+GL L + LE+ + A +GL +
Sbjct: 205 LTLRNN-FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN------- 256
Query: 400 HNLLTFDEYQYGY 412
LT +E++ Y
Sbjct: 257 ---LTIEEFRLAY 266
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
++L+L N + L S F P+LQVLDL ++ ++ +++L+ L L L N + +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP-KDLFAEMKY 247
L F+ + +L+ L N++ L + L+ L+ N Q F + F+ +
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 248 LQVIKISYHK 257
L+ + +S +K
Sbjct: 151 LEHLDLSSNK 160
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F+GL ++ + ++ N DIF L L+L + +L F + LQVL+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVP-NLRSLDISGNNIS 211
+ N+ +D +K L SL++L+ N ++ + + P +L L+++ N+ +
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
Q L L +N + ++P +F +L +L+ L + N+L + +F+ + L LD++ N++
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLF 242
+P G F +L+ L Y +N + +D+
Sbjct: 96 IPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
T + L L++NQ+ L +F+++ NL+ L + N ++ +P+GVF L +L N N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 234 FQMFPKDLFAEMKYLQVI 251
+ P+ F +K L I
Sbjct: 93 LKSIPRGAFDNLKSLTHI 110
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 201 RSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
+ L ++ N I+ L GVF L LQ Y NSN+ P +F K Q+ ++ + + L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLNDNHL 93
Query: 261 KELPSGLFANLPLLNTVIL 279
K +P G F NL L + L
Sbjct: 94 KSIPRGAFDNLKSLTHIYL 112
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 99 GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG 158
G+ K L +N +IT L +F L+ L N +T + +GVF + +L LDL
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 159 SNDVAYMDPEIFKNLTSL 176
N + + F NL SL
Sbjct: 90 DNHLKSIPRGAFDNLKSL 107
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--G 365
+L S+P+ + D ++L L N++ L +F+ L L L +N+L I + V
Sbjct: 23 RLASVPAGIPTDKQRLW---LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L+ L LDL+ N L+ I AFD L SL + L +N
Sbjct: 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 12/144 (8%)
Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDL 374
T ++ K+ +LEL N LK + + L+ + TL+L + Q+ ++T L GLS L L L
Sbjct: 85 TPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 142
Query: 375 SWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434
NQ+ I+ +A GL++L + + +N + +PL L T+ N+IS +
Sbjct: 143 DLNQITNISPLA--GLTNLQYLSIGNNQVN------DLTPLANLSKLTTLRADDNKISDI 194
Query: 435 FDDWISSMTSLKELDLRHNNFSFI 458
++S+ +L E+ L+ N S +
Sbjct: 195 --SPLASLPNLIEVHLKDNQISDV 216
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLVKLELQRNKLK 334
TV + E+P D+ ++T + L +L + S LF LVKLEL+RN+L
Sbjct: 12 TVDCTGRGLKEIPRDIPLHTTEL----LLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 335 YLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
+ N FE + L L N+++ I++ +GL L +L+L NQ+ + +F+ L+S
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 393 LNTVDLSHN 401
L +++L+ N
Sbjct: 128 LTSLNLASN 136
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN 180
+F P L L L+ N +T + F+ +Q L LG N + + ++F L L+ LN
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 181 LDHNQLINLTRAIFNNVPNLRSLDISGN 208
L NQ+ + F ++ +L SL+++ N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNT-VILGESSIAELPSD-LFWNSTNITNIV 302
M + + + LKE+P ++PL T ++L ++ + + SD LF ++ +
Sbjct: 5 MCHCEGTTVDCTGRGLKEIPR----DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60
Query: 303 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI-- 360
L +LT + F + +L+L NK+K + +F L +L TLNL +NQ+ +
Sbjct: 61 LK-RNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Query: 361 TSLVGLSGLNSLDLSWN 377
S L+ L SL+L+ N
Sbjct: 120 GSFEHLNSLTSLNLASN 136
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 333 LKYLPENLFESLKELYTLNLKNNQLENITS--LVG-LSGLNSLDLSWNQLEQINLIAFDG 389
LK +P ++ EL L +N+L I+S L G L L L+L NQL I AF+G
Sbjct: 20 LKEIPRDIPLHTTELL---LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76
Query: 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELD 449
S + + L N + + + L Q L+T+NL N+IS + + SL L+
Sbjct: 77 ASHIQELQLGENKIKEISNKM-FLGLHQ---LKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
Query: 450 LRHNNF 455
L N F
Sbjct: 133 LASNPF 138
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 39/273 (14%)
Query: 101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN 160
H + L ++T + D+ + +L + + I + G F L+ +++ N
Sbjct: 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQN 64
Query: 161 DV-AYMDPEIFKNLTSLRILNLDH-NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVF 218
DV ++ ++F NL L + ++ N L+ + F N+PNL+ L IS I LP
Sbjct: 65 DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP---- 120
Query: 219 SDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD-SLKELPSGLFANLPLLNTV 277
D+ K+ + LQ + + + ++ + F L + +
Sbjct: 121 -DVHKIHS---------------------LQKVLLDIQDNINIHTIERNSFVGLSFESVI 158
Query: 278 I-LGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL 336
+ L ++ I E+ + F N T + + L+ + L LP+ +F V L++ R ++ L
Sbjct: 159 LWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217
Query: 337 PENLFESLKELY---TLNLKNNQLENITSLVGL 366
P E+LK+L T NLK +L + LV L
Sbjct: 218 PSYGLENLKKLRARSTYNLK--KLPTLEKLVAL 248
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 9/191 (4%)
Query: 91 VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNL-RGNSITELYSGVFQYV 149
V+ F G ++ I +S N + + D+F P+L + + + N++ + FQ +
Sbjct: 44 VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLR----SLDI 205
P LQ L + + + ++ P++ K + SL+ + LD IN+ N+ L L +
Sbjct: 104 PNLQYLLISNTGIKHL-PDVHK-IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161
Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPS 265
+ N I + + F+ + + +++N + P D+F ++ IS + + LPS
Sbjct: 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS--RTRIHSLPS 219
Query: 266 GLFANLPLLNT 276
NL L
Sbjct: 220 YGLENLKKLRA 230
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 88 NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLR-GNSITELYSGVF 146
N+ + F GL F IL + I +H F GT QL+ LNL N++ EL + VF
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT-QLDELNLSDNNNLEELPNDVF 198
Query: 147 QYVPKLQVLDLGSNDVAYMDPEIFKNLTSLR 177
+LD+ + + +NL LR
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLR 229
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
LN+ N I+EL++ + KL++L + N + Y+D +FK L L+L HN+L+ ++
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
Query: 191 RAIFNNVPNLRSLDISGNNISILPS----GVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
+ NL+ LD+S N LP G S L+ L + + + P K
Sbjct: 86 ---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142
Query: 247 YLQVIKISYHKDSLKELPSGL 267
L V+ +Y + KE P GL
Sbjct: 143 VLLVLGETYGE---KEDPEGL 160
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 125 TPQLESLNLRGNSITELYSGVFQYVP-KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
T L SLN+ N +T+ +F+ +P +++VLDL SN + + ++ K L +L+ LN+
Sbjct: 398 TKSLLSLNMSSNILTD---TIFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVAS 453
Query: 184 NQLINLTRAIFNNVPNLRSLDISGN 208
NQL ++ IF+ + +L+ + + N
Sbjct: 454 NQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 27/176 (15%)
Query: 366 LSGLNSLDLSWNQLEQINLIA--FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLET 423
L+ L +L L NQL++++ IA + SL +D+S N +++DE + S K
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL----- 401
Query: 424 INLSYNRISSLFDDWISSMT--SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAI 481
LS N S++ D I +K LDL N IP Q+ + + + L+++ NQ+
Sbjct: 402 --LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQ-ELNVASNQLKS 458
Query: 482 VDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYD-LIRFVSKKMTK 536
V + + Q + L+ NP C+C D L R+++K K
Sbjct: 459 VPDGIFDRLTSLQK--------------IWLHTNPWDCSCPRIDYLSRWLNKNSQK 500
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 12/140 (8%)
Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
++ K+ +LEL N LK + + L+ + TL+L + Q+ ++T L GLS L L L
Sbjct: 81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
NQ+ I+ +A GL++L + + + ++ +PL L T+ N+IS +
Sbjct: 139 NQITNISPLA--GLTNLQYLSIGNAQVS------DLTPLANLSKLTTLKADDNKISDI-- 188
Query: 437 DWISSMTSLKELDLRHNNFS 456
++S+ +L E+ L++N S
Sbjct: 189 SPLASLPNLIEVHLKNNQIS 208
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 34/232 (14%)
Query: 141 LYSGVFQYVPKLQVLDLGSNDV-AYMDPEIFKNLTSLRILNLDH-NQLINLTRAIFNNVP 198
+ G F L+ +++ NDV ++ ++F NL L + ++ N L+ + F N+P
Sbjct: 45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104
Query: 199 NLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK 257
NL+ L IS I LP L+K+ ++ ++ F + + VI + +K
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI-LWLNK 163
Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
+ ++E+ + F N T + + L+ + L LP+ +F
Sbjct: 164 NGIQEIHNCAF-------------------------NGTQLDELNLSDNNNLEELPNDVF 198
Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELY---TLNLKNNQLENITSLVGL 366
V L++ R ++ LP E+LK+L T NLK +L + LV L
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK--KLPTLEKLVAL 248
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 92/234 (39%), Gaps = 50/234 (21%)
Query: 91 VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVP 150
V+ F G ++ I +S N + + D+F P+L + +
Sbjct: 44 VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE---------------- 87
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
+N++ Y++PE F+NL PNL+ L IS I
Sbjct: 88 -------KANNLLYINPEAFQNL------------------------PNLQYLLISNTGI 116
Query: 211 SILPS-GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA 269
LP L+K+ ++ ++ F + + VI + +K+ ++E+ + F
Sbjct: 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI-LWLNKNGIQEIHNCAFN 175
Query: 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 323
L + +++ ELP+D+F ++ I+ ++ SLPS + KKL
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPV-ILDISRTRIHSLPSYGLENLKKL 228
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 88 NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLR-GNSITELYSGVF 146
N+ + F GL F IL + I +H F GT QL+ LNL N++ EL + VF
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT-QLDELNLSDNNNLEELPNDVF 198
Query: 147 QYVPKLQVLDLGSNDVAYMDPEIFKNLTSLR 177
+LD+ + + +NL LR
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLR 229
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 129/279 (46%), Gaps = 36/279 (12%)
Query: 146 FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205
+Y+ L+ L+L N + + P NL L L + N++ +++ N+ NLR L +
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYL 117
Query: 206 SGNNIS-ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP 264
+ +NIS I P + L AN N + P + YL V + S KD
Sbjct: 118 NEDNISDISPLANLTKXYSLN-LGANHNLSDLSPLSNXTGLNYLTVTE-SKVKDVTP--- 172
Query: 265 SGLFANLPLLNTVILGESSI------AELPSDLFWNS-----TNIT--------NIVLTG 305
ANL L ++ L + I A L S ++ + T+IT N + G
Sbjct: 173 ---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIG 229
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
+ K+T L + +L LE+ N++ + N + L +L LN+ +NQ+ +I+ L
Sbjct: 230 NNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISDISVLNN 285
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
LS LNSL L+ NQL + GL++L T+ LS N +T
Sbjct: 286 LSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT 324
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 120/268 (44%), Gaps = 58/268 (21%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
P+L +L + GN +T L P L L + SN + ++ P + L L I NQ
Sbjct: 81 PELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHL-PALPSGLCKLWIFG---NQ 132
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
L +L P L+ L +S N ++ LP+ + S+L KL + M P L
Sbjct: 133 LTSLPVL----PPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPMLPSGL---- 183
Query: 246 KYLQVIKISYHK-DSLKELPSGLF---------ANLPLLNT-----VILGE--SSIAELP 288
Q + +S ++ SL LPS L+ +LP L + ++ G +S+ LP
Sbjct: 184 ---QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP 240
Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
S+L ++++G++ LTSLP L+ L + RN+L LPE+L L
Sbjct: 241 SEL-------KELMVSGNR-LTSLPML----PSGLLSLSVYRNQLTRLPESLIH-LSSET 287
Query: 349 TLNLKNN--------QLENITSLVGLSG 368
T+NL+ N L ITS G SG
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSG 315
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 26/177 (14%)
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE------------SLKELYTLNL 352
+ ++T +P+ +++ L NKLKY+P N+F+ S E+ +++
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVXSAIDFSYNEIGSVDG 419
Query: 353 KNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT-------F 405
KN + T G++ ++S++LS NQ+ + F S L++++L N LT
Sbjct: 420 KNFDPLDPTPFKGIN-VSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLK 478
Query: 406 DEYQYGYSPLKQCVNLETINLSYNRISSLFDDW-ISSMTSLKELDLRHNNFSFIPDQ 461
DE + K L +I+L +N+++ L DD+ +++ L +DL +N+FS P Q
Sbjct: 479 DENEN----FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 301 IVLTGHKKLTSLP-STLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 358
I+ G+ L + P T + KKL LE N+L+ LP F S +L +LNL NQ+
Sbjct: 309 IIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT 366
Query: 359 NI-TSLVGLS-GLNSLDLSWNQLEQI-NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPL 415
I + G + + +L + N+L+ I N+ +S + +D S+N + + + + PL
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGK-NFDPL 425
Query: 416 K----QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP-----DQLDSIV 466
+ +N+ +INLS N+IS + S+ + L ++L N + IP D+ ++
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFK 485
Query: 467 SNKL--TLDLSFNQI 479
+ L ++DL FN++
Sbjct: 486 NTYLLTSIDLRFNKL 500
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSI-VSNKLTLDLSFN 477
+ L ++NL+YN+I+ + ++ ++ L HN +IP+ D+ VS +D S+N
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYN 412
Query: 478 QIAIVDLRTLE 488
+I VD + +
Sbjct: 413 EIGSVDGKNFD 423
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 24/131 (18%)
Query: 88 NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQ 147
N L P F G++ V I LS+N +I+ K++F L S+NL GN +TE
Sbjct: 421 NFDPLDPTPFKGIN-VSSINLSNN-QISKFPKELFSTGSPLSSINLXGNXLTE------- 471
Query: 148 YVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT---RAIFNNVPNLRSLD 204
+PK + D N FKN L ++L N+L L+ RA +P L +D
Sbjct: 472 -IPKNSLKDENEN---------FKNTYLLTSIDLRFNKLTKLSDDFRAT--TLPYLVGID 519
Query: 205 ISGNNISILPS 215
+S N+ S P+
Sbjct: 520 LSYNSFSKFPT 530
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 34/132 (25%)
Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAY----------------- 164
F +L SLNL N ITE+ + + +++ L N + Y
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAID 408
Query: 165 ----------------MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
+DP FK + ++ +NL +NQ+ + +F+ L S+++ GN
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGI-NVSSINLSNNQISKFPKELFSTGSPLSSINLXGN 467
Query: 209 NISILPSGVFSD 220
++ +P D
Sbjct: 468 XLTEIPKNSLKD 479
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 15/113 (13%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
LE LNL+ N I ++ V KL+ LDL SN +A+M PE F++ + ++L +N+L+
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV 227
Query: 188 NLTRAI-FNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
+ +A+ F+ NL D+ GN G D F++ + R Q K
Sbjct: 228 LIEKALRFS--QNLEHFDLRGNGFHC---GTLRD------FFSKNQRVQTVAK 269
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
++ L+L GN ++++ + KL++L+L SN V Y ++ ++L++LR L+L++N +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDL-ESLSTLRTLDLNNNYVQ 93
Query: 188 NLTRAIFNNVPNLRSLDISGNNIS 211
L P++ +L + NNIS
Sbjct: 94 ELLVG-----PSIETLHAANNNIS 112
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
LE LNL+ N I ++ V KL+ LDL SN +A+M PE F++ + ++L +N+L+
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV 227
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
+ +A+ NL D+ GN G D F++ + R Q K
Sbjct: 228 LIEKAL-RFSQNLEHFDLRGNGFHC---GTLRD------FFSKNQRVQTVAK 269
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
++ L+L GN ++++ + KL++L+L SN V Y ++ ++L++LR L+L++N +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDL-ESLSTLRTLDLNNNYVQ 93
Query: 188 NLTRAIFNNVPNLRSLDISGNNIS 211
L P++ +L + NNIS
Sbjct: 94 ELLVG-----PSIETLHAANNNIS 112
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 299 TNIVLTGHK----KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY------ 348
TN+ LT K ++ +P ++ L NKLKY+P N+F + K +Y
Sbjct: 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNA-KSVYVXGSVD 650
Query: 349 -TLNLKNNQLENIT-SLVGLSGLNS--LDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
+ N ++ NI+ S G+N+ + LS+N++++ F S ++T+ LS+NL T
Sbjct: 651 FSYNKIGSEGRNISCSXDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLXT 710
Query: 405 F---DEYQYGYSPLKQCVNLETINLSYNRISSLFDDW-ISSMTSLKELDLRHNNFSFIPD 460
+ + K L TI+L +N+++SL DD+ +++ L D+ +N FS P
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNXDVSYNCFSSFPT 770
Query: 461 Q 461
Q
Sbjct: 771 Q 771
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 24/236 (10%)
Query: 126 PQLESLNL---RGNSITELYSGVFQYV------PKLQVLDLGSNDVAYMDPEI-FKNLTS 175
P+L+SLN+ RG S +L + + PK+Q+ G N++ +
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYXGYNNLEEFPASASLQKXVK 574
Query: 176 LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
L +L+ HN++ +L A NV L L + N I +P + +++ + N+ +
Sbjct: 575 LGLLDCVHNKVRHL-EAFGTNV-KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632
Query: 236 MFPKDLFAEMKYLQ-VIKISYHK-DSLKELPSGLFANLPLLN--TVILGESSIAELPSDL 291
P A+ Y+ + SY+K S S + +N TV L + I + P++L
Sbjct: 633 YIPNIFNAKSVYVXGSVDFSYNKIGSEGRNISCSXDDYKGINASTVTLSYNEIQKFPTEL 692
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTL-------FRDCKKLVKLELQRNKLKYLPENL 340
F + I+ I+L+ + TS+P +++ L ++L+ NKL L ++
Sbjct: 693 FATGSPISTIILS-NNLXTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSI-VSNKLTLDLSFN 477
V L + L YN+I + +D+ + ++ L HN +IP+ ++ V ++D S+N
Sbjct: 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYN 654
Query: 478 QIA 480
+I
Sbjct: 655 KIG 657
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 30/199 (15%)
Query: 301 IVLTGHKKLTSLPSTL-FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 359
I G+ L P++ + KL L+ NK+++L F + +L L L NQ+E
Sbjct: 552 IFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEE 609
Query: 360 ITS--LVGLSGLNSLDLSWNQLEQI-NLIAFDGLSSLNTVDLSHNLL---------TFDE 407
I + L S N+L+ I N+ + +VD S+N + + D+
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKIGSEGRNISCSXDD 669
Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQ----LD 463
Y+ +N T+ LSYN I + ++ + + + L +N + IP+ D
Sbjct: 670 YK--------GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLXTSIPENSLKPKD 721
Query: 464 SIVSNKL---TLDLSFNQI 479
N T+DL FN++
Sbjct: 722 GNYKNTYLLTTIDLRFNKL 740
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
++ ++DLS+N +T+ S L++CVNL+ + L+ N I+++ +D SS+ SL+ LDL
Sbjct: 27 AVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 452 HNNFS 456
+N S
Sbjct: 83 YNYLS 87
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 31/168 (18%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
VK + LS+N+ IT + + L++L L N I + F + L+ LDL N +
Sbjct: 28 VKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
+ + FK L+SL LNL N L + +FS L
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYKTLGE-----------------------TSLFSHLT 123
Query: 223 KLQTF-YANSNRFQMFPKDLFAEMKYLQVIKI------SYHKDSLKEL 263
KLQ N + F + FA + +L+ ++I SY SLK +
Sbjct: 124 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 171
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450
+++ ++DLS N +T+ G+ L+ C NL+ + L +RI+++ D S+ SL+ LDL
Sbjct: 26 AAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 451 RHNNFS 456
N+ S
Sbjct: 82 SDNHLS 87
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
+K + LS NK H D+ + L+ L L+ + I + F + L+ LDL N +
Sbjct: 28 MKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 163 AYMDPEIFKNLTSLRILNLDHN--QLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSD 220
+ + F L+SL+ LNL N Q + +T ++F N+ NL++L I GN FS+
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-SLFPNLTNLQTLRI-GN------VETFSE 138
Query: 221 LRKL 224
+R++
Sbjct: 139 IRRI 142
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450
+++ ++DLS N +T+ G+ L+ C NL+ + L +RI+++ D S+ SL+ LDL
Sbjct: 52 AAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 107
Query: 451 RHNNFS 456
N+ S
Sbjct: 108 SDNHLS 113
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
+K + LS NK H D+ + L+ L L+ + I + F + L+ LDL N +
Sbjct: 54 MKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 163 AYMDPEIFKNLTSLRILNLDHN--QLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSD 220
+ + F L+SL+ LNL N Q + +T ++F N+ NL++L I GN FS+
Sbjct: 113 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-SLFPNLTNLQTLRI-GN------VETFSE 164
Query: 221 LRKL 224
+R++
Sbjct: 165 IRRI 168
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 123 KGTPQLESLNLRGNSI-TELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLT-SLRILN 180
K LE+L++ NS+ + Y + + VL+L SN + +F+ L +++L+
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN---MLTGSVFRCLPPKVKVLD 456
Query: 181 LDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
L +N+++++ + + ++ L+ L+++ N + +P GVF L LQ + + N
Sbjct: 457 LHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL-TFDEYQYGYSPLKQCVNLETINLSYN 429
+L LS N + ++ + LS L + LSHN + + D + + ++ +LE +++S+N
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-----DLEYLDVSHN 110
Query: 430 RISSLFDDWISSMTSLKELDLRHNNFSFIP 459
R+ ++ M SL+ LDL N+F +P
Sbjct: 111 RLQNIS---CCPMASLRHLDLSFNDFDVLP 137
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
P+ + L L N ++ + L+ LR+L L HN++ +L +F +L LD+S N
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFP 238
+ + + LR L + N F + P
Sbjct: 112 LQNISCCPMASLRHLDLSF---NDFDVLP 137
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ 381
+L L L N+++ L ++F ++L L++ +N+L+NI S ++ L LDLS+N +
Sbjct: 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCCPMASLRHLDLSFNDFDV 135
Query: 382 INLIA-FDGLSSLNTVDLS 399
+ + F L+ L + LS
Sbjct: 136 LPVCKEFGNLTKLTFLGLS 154
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 168/391 (42%), Gaps = 84/391 (21%)
Query: 126 PQLESLNLRGNSITEL----------------YSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
P LESL NS+TEL + P L+ L + +N + + PE+
Sbjct: 91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL-PEL 149
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
+N + L+I+++D+N L + + + P+L + N + LP +L L YA
Sbjct: 150 -QNSSFLKIIDVDNNSL----KKLPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYA 202
Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES---SIAE 286
++N + P DL L + I + L+ELP NLP L T+ + ++ +
Sbjct: 203 DNNSLKKLP-DL-----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPD 254
Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTL-FRDCKKLVKLELQRNKLKYLPENLFESLK 345
LP L + N+ + LT L LP +L F D EN+F L
Sbjct: 255 LPPSL--EALNVRDNYLTD---LPELPQSLTFLDVS----------------ENIFSGLS 293
Query: 346 E----LYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQI--------NLIA-FDGLSS 392
E LY LN +N++ ++ L L L++S N+L ++ LIA F+ L+
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLP--PSLEELNVSNNKLIELPALPPRLERLIASFNHLAE 351
Query: 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452
+ +L NL + Y+PL++ ++ ++ R++S + +LK+L +
Sbjct: 352 V--PELPQNL---KQLHVEYNPLREFPDIPE-SVEDLRMNSHLAEVPELPQNLKQLHVET 405
Query: 453 NNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD 483
N PD +S+ DL N +VD
Sbjct: 406 NPLREFPDIPESVE------DLRMNSERVVD 430
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 38/240 (15%)
Query: 95 PYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITEL------------- 141
P L F+ I +N L K + P LE+LN+R N +T+L
Sbjct: 231 PELQNLPFLTTIYADNN-----LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS 285
Query: 142 ---YSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVP 198
+SG+ + P L L+ SN++ + SL LN+ +N+LI L P
Sbjct: 286 ENIFSGLSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIELPAL----PP 337
Query: 199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD 258
L L S N+++ +P + +L++L Y F P+ ++ ++++ H
Sbjct: 338 RLERLIASFNHLAEVPE-LPQNLKQLHVEYNPLREFPDIPES-------VEDLRMNSHLA 389
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
+ ELP L L + + I E DL NS + + H+ L +F
Sbjct: 390 EVPELPQNL-KQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 65/235 (27%)
Query: 240 DLFAEMKYLQVIKISYHKDSLKELPSGLFA------------NLPLLNTVILGESSI--- 284
+ FA + L+ + + DS + L +GLF+ NL ++ E +
Sbjct: 156 EAFATCESLEYVSLP---DSXETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLEN 212
Query: 285 AELPSDLFW------NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK---- 334
E P+ L++ + T + NI++ T L ++F C L + +Q NKL+
Sbjct: 213 XEFPNSLYYLGDFALSKTGVKNIIIP--DSFTELGKSVFYGCTDLESISIQNNKLRIGGS 270
Query: 335 ----------------YLPENLF---ESLKELYTLN----LKNNQLENITSLVGLSGLNS 371
+PE F SL E+ L+ + E+ TSLV S
Sbjct: 271 LFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLV------S 324
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
+DL + +E+I +F G +SL+ ++ +L + G + + C+NL+ + L
Sbjct: 325 IDLPY-LVEEIGKRSFRGCTSLSNINFPLSL-----RKIGANAFQGCINLKKVEL 373
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 93/262 (35%), Gaps = 57/262 (21%)
Query: 196 NVPNLRSLDISGNN--ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
N+P L L I G N + +P + + L +L Y D +++K L +
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 254 SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 313
SY+ L LP SI+ LP N+ I G++ ++P
Sbjct: 133 SYN---------ALSGTLP---------PSISSLP--------NLVGITFDGNRISGAIP 166
Query: 314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLD 373
+ K + + RN+L F +L + +D
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-----------------------VD 203
Query: 374 LSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
LS N LE + F + + L+ N L FD + G S NL ++L NRI
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-----KNLNGLDLRNNRIYG 258
Query: 434 LFDDWISSMTSLKELDLRHNNF 455
++ + L L++ NN
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNL 280
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ 381
+L L L NK+ + + L +L TL+L++NQ+ +I L GL+ L +L LS N +
Sbjct: 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 192
Query: 382 INLIAFDGLSSLNTVDL 398
+ +A GL +L+ ++L
Sbjct: 193 LRALA--GLKNLDVLEL 207
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
PQLESL L N IT++ V + KL L L N ++ + P LT L+ L L N
Sbjct: 134 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189
Query: 186 LINLTRAIFNNVPNLRSLDI 205
+ +L RA+ L++LD+
Sbjct: 190 ISDL-RAL----AGLKNLDV 204
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 89/208 (42%), Gaps = 60/208 (28%)
Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSL------KELPS--GLFANLPLLNTVILGESSIAE 286
Q+FP D FAE IK + K S+ EL S + AN N+ I I
Sbjct: 34 QIFPDDAFAE-----TIKANLKKKSVTDAVTQNELNSIDQIIAN----NSDIKSVQGIQY 84
Query: 287 LP--SDLFWNSTNITNIVLTGHKKLTSLP--STLFRDCKKLVKLELQR------------ 330
LP + LF N +T+I K LT+L LF D K+ L +
Sbjct: 85 LPNVTKLFLNGNKLTDI-----KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 331 ------NKLKYLPE--------------NLFESLKELYTLNLKNNQLENITSLVGLSGLN 370
N L +LP+ + L +L TL+L++NQ+ +I L GL+ L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 199
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDL 398
+L LS N + +L A GL +L+ ++L
Sbjct: 200 NLYLSKNHIS--DLRALAGLKNLDVLEL 225
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
PQLESL L N IT++ V + KL L L N ++ + P LT L+ L L N
Sbjct: 152 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 207
Query: 186 LINLTRAIFNNVPNLRSLDI 205
+ +L RA+ L++LD+
Sbjct: 208 ISDL-RAL----AGLKNLDV 222
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ 381
+L L L NK+ + + L +L TL+L++NQ+ +I L GL+ L +L LS N +
Sbjct: 155 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS- 211
Query: 382 INLIAFDGLSSLNTVDL 398
+L A GL +L+ ++L
Sbjct: 212 -DLRALAGLKNLDVLEL 227
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
P L SLNL N IT++ QY+P + L L N + + P NL +L L LD N+
Sbjct: 66 PNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 121
Query: 186 L 186
+
Sbjct: 122 V 122
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
PQLESL L N IT++ V + KL L L N ++ + P LT L+ L L N
Sbjct: 154 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 209
Query: 186 LINLTRAIFNNVPNLRSLDI 205
+ +L RA+ L++LD+
Sbjct: 210 ISDL-RAL----AGLKNLDV 224
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ 381
+L L L NK+ + + L +L TL+L++NQ+ +I L GL+ L +L LS N +
Sbjct: 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS- 191
Query: 382 INLIAFDGLSSLNTVDL 398
+L A GL +L+ ++L
Sbjct: 192 -DLRALAGLKNLDVLEL 207
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
PQLESL L N IT++ V + KL L L N ++ + P LT L+ L L N
Sbjct: 134 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189
Query: 186 LINLTRAIFNNVPNLRSLDI 205
+ +L RA+ L++LD+
Sbjct: 190 ISDL-RAL----AGLKNLDV 204
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 340 LFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
+ L +L TL+L++NQ+ +I L GL+ L +L LS N + +L A GL +L+ ++L
Sbjct: 149 VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 205
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
PQLESL L N IT++ V + KL L L N ++ + P LT L+ L L N
Sbjct: 132 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 187
Query: 186 LINLTRAIFNNVPNLRSLDI 205
+ +L RA+ L++LD+
Sbjct: 188 ISDL-RAL----AGLKNLDV 202
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 340 LFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
+ L +L TL+L++NQ+ +I L GL+ L +L LS N + +L A GL +L+ ++L
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 204
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
PQLESL L N IT++ V + KL L L N ++ + P LT L+ L L N
Sbjct: 131 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186
Query: 186 LINLTRAIFNNVPNLRSLDI 205
+ +L RA+ L++LD+
Sbjct: 187 ISDL-RAL----AGLKNLDV 201
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 340 LFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
+ L +L TL+L++NQ+ +I L GL+ L +L LS N + +L A GL +L+ ++L
Sbjct: 169 VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 225
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
PQLESL L N IT++ V + KL L L N ++ + P LT L+ L L N
Sbjct: 152 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 207
Query: 186 LINLTRAIFNNVPNLRSLDI 205
+ +L RA+ L++LD+
Sbjct: 208 ISDL-RAL----AGLKNLDV 222
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 340 LFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
+ L +L TL+L++NQ+ +I L GL+ L +L LS N + +L A GL +L+ ++L
Sbjct: 169 VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 225
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
PQLESL L N IT++ V + KL L L N ++ + P LT L+ L L N
Sbjct: 152 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 207
Query: 186 LINLTRAIFNNVPNLRSLDI 205
+ +L RA+ L++LD+
Sbjct: 208 ISDL-RAL----AGLKNLDV 222
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 340 LFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
+ L +L TL+L++NQ+ +I L GL+ L +L LS N + +L A GL +L+ ++L
Sbjct: 146 VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 202
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
PQLESL L N IT++ V + KL L L N ++ + P LT L+ L L N
Sbjct: 129 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 184
Query: 186 LINLTRAIFNNVPNLRSLDI 205
+ +L RA+ L++LD+
Sbjct: 185 ISDL-RAL----AGLKNLDV 199
>pdb|3SB4|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
pdb|3SB4|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
Length = 329
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 28/120 (23%)
Query: 198 PNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK 257
PNL SLDIS N + +P F+ FA+ KYL IK+ ++
Sbjct: 226 PNLVSLDISKTNATTIPD--FT----------------------FAQKKYLLKIKLPHN- 260
Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
LK + +F+N L + +S+ + F N+ ++ TG K+T+L LF
Sbjct: 261 --LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFXGCDNLRYVLATGD-KITTLGDELF 317
>pdb|1WMR|A Chain A, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1WMR|B Chain B, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1X0C|A Chain A, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|1X0C|B Chain B, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|2Z8G|A Chain A, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
pdb|2Z8G|B Chain B, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
Length = 549
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 197 VPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256
P S+D SGN++ ++ V D +++ FY ++ +M+P + ++ Y
Sbjct: 304 APPFNSMDWSGNSLDLITCRV-DDYKQVGAFYGQTDGLEMYPGTILQDVFYHT------D 356
Query: 257 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 303
D LK ++N+ N V+ E S+A + + W N N++
Sbjct: 357 DDGLKM----YYSNVTARNIVMWKE-SVAPV-VEFGWTPRNTENVLF 397
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 24/123 (19%)
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-------------YLPENLFE 342
TN+ + L+ H +++ L + +D KL +L + RN+LK +L N
Sbjct: 63 TNLKELHLS-HNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR 119
Query: 343 S------LKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV 396
LK L L+++NN+L++I L LS L LDL N++ N L +N +
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWI 177
Query: 397 DLS 399
DL+
Sbjct: 178 DLT 180
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 20/142 (14%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
+L+L I + + +F+Y L L L N + + EI KNL++LR+L+L HN+L +L
Sbjct: 228 ALDLSNLQIFNISANIFKY-DFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSL 285
Query: 190 TRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQ 249
A + L+ N ++ LP F +L LQ N E ++L+
Sbjct: 286 P-AELGSCFQLKYFYFFDNMVTTLP-WEFGNLCNLQFLGVEGNPL---------EKQFLK 334
Query: 250 VIK-------ISYHKDSLKELP 264
++ I Y +D+ E+P
Sbjct: 335 ILTEKSVTGLIFYLRDNRPEIP 356
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLI 385
L+L N+L+ LP L +L+ L L +N LEN+ + L L L L N+L+Q I
Sbjct: 468 LDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI 526
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ 381
L+L N+L+ LP L +L+ L L +N LEN+ + L L L L N+L+Q
Sbjct: 468 LDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 106 ILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITEL--YSGVFQYVPKLQVLDLGSNDV- 162
++L+ + + I + P+L SLNL N + L S + Q P L++L+L N++
Sbjct: 150 VVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTR-------AIFNNVPNLRSLD 204
+ + + K L L L LD N L + R AI P L LD
Sbjct: 210 SERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
PQLESL L N IT++ V + KL L L N + + P LT L+ L L N
Sbjct: 132 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNH 187
Query: 186 LINLTRAIFNNVPNLRSLDI 205
+ +L RA+ L++LD+
Sbjct: 188 ISDL-RALR----GLKNLDV 202
>pdb|4A1F|A Chain A, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
pdb|4A1F|B Chain B, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
Length = 338
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 39/169 (23%)
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQC------------ 418
SL++S EQ+ L A L+S+N DL L D+++ L +C
Sbjct: 81 SLEMS---AEQLALRALSDLTSINMHDLESGRLDDDQWE----NLAKCFDHLSQKKLFFY 133
Query: 419 ----VNLETINLSYNRISS-------LFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS 467
V +E I L ++ S F D++ M+ K RH + I +L +
Sbjct: 134 DKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKT--- 190
Query: 468 NKLTLDLSFNQIAIVDL-RTLEIKAAAQ---DPNEDSTMVARSANIVIL 512
L +L IA+V L R+LE + + +DS + + A+IV+
Sbjct: 191 --LARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLF 237
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 474 LSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKK 533
L+ +A + +E+ A AQ T+VAR I +L D P + +N D R
Sbjct: 163 LAVQALAAKGAKDVELLALAQLIGAAGTLVARRRGITVLGDRPPMVSVTNADPER----- 217
Query: 534 MTKTVYQMLE 543
+Y++LE
Sbjct: 218 ----IYELLE 223
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSN 160
L L GN++T + G F ++P+L+ LG+N
Sbjct: 35 LVLTGNNLTSVPPGAFDHLPQLRTAHLGAN 64
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 106 ILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITEL--YSGVFQYVPKLQVLDLGSNDV- 162
++L+ + + I + P+L SLNL N + L S + Q P L++L+L N++
Sbjct: 150 VVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTR-------AIFNNVPNLRSLD 204
+ + + K L L L LD N L + R AI P L LD
Sbjct: 210 SERELDKIKGL-KLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 257
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
PQLESL L N IT++ V + KL L L N ++ + P LT L+ L L N
Sbjct: 129 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNH 184
Query: 186 LINLTRAIFNNVPNLRSLDI 205
+ +L RA+ L++LD+
Sbjct: 185 ISDL-RALC----GLKNLDV 199
>pdb|2GNP|A Chain A, Structural Genomics, The Crystal Structure Of A
Transcriptional Regulator From Streptococcus Pneumoniae
Tigr4
Length = 266
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 590 SVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
++ S L ++P L V Y D K +SI +L N +NH +
Sbjct: 210 TIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLI 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,363,370
Number of Sequences: 62578
Number of extensions: 799028
Number of successful extensions: 3428
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1766
Number of HSP's gapped (non-prelim): 735
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)