Query psy8029
Match_columns 693
No_of_seqs 568 out of 5302
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 16:37:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.1E-58 7.2E-63 533.5 40.7 624 19-683 36-729 (768)
2 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-55 3.7E-60 506.2 47.6 567 26-677 7-627 (680)
3 3t6q_A CD180 antigen; protein- 100.0 2.8E-53 9.7E-58 479.6 42.5 504 26-564 15-603 (606)
4 3rgz_A Protein brassinosteroid 100.0 1.5E-53 5.2E-58 492.8 35.5 590 46-669 98-738 (768)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-52 5.1E-57 480.2 42.4 568 51-676 7-602 (680)
6 3t6q_A CD180 antigen; protein- 100.0 6.2E-52 2.1E-56 468.7 41.0 516 76-679 34-567 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-51 4.4E-56 466.1 34.3 497 27-564 15-601 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-51 1.3E-55 462.1 33.9 534 51-680 14-566 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-49 6.6E-54 463.2 31.6 497 26-564 7-604 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 2E-48 6.8E-53 436.9 36.2 468 27-533 11-547 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-47 6.4E-52 446.5 38.1 530 51-677 7-565 (844)
12 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-46 3.8E-51 428.4 38.3 504 27-572 35-628 (635)
13 2z81_A CD282 antigen, TOLL-lik 100.0 7.2E-47 2.5E-51 422.1 29.7 473 38-554 16-539 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 4.9E-47 1.7E-51 425.5 28.3 493 75-655 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 6.4E-46 2.2E-50 414.4 32.9 481 79-654 9-514 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.7E-45 9.1E-50 406.4 26.6 467 41-554 14-510 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 3E-43 1E-47 400.1 31.6 517 75-681 52-589 (635)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4E-43 1.4E-47 392.2 32.0 474 48-562 31-554 (562)
19 4eco_A Uncharacterized protein 100.0 1.3E-42 4.5E-47 392.3 30.1 434 19-490 63-610 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-42 5.4E-47 384.2 23.3 59 588-651 423-481 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 1.6E-41 5.4E-46 389.5 30.7 439 48-523 323-871 (876)
22 3v47_A TOLL-like receptor 5B a 100.0 9.6E-41 3.3E-45 363.5 34.8 398 78-533 13-424 (455)
23 4ecn_A Leucine-rich repeat pro 100.0 5.1E-41 1.8E-45 385.2 26.8 378 88-482 436-866 (876)
24 4eco_A Uncharacterized protein 100.0 1.8E-40 6.1E-45 374.9 28.9 412 75-519 81-601 (636)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-39 3.9E-44 364.3 27.8 458 77-655 33-515 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 3.3E-38 1.1E-42 343.5 31.5 386 51-483 13-411 (455)
27 2id5_A Lingo-1, leucine rich r 100.0 1.9E-38 6.4E-43 347.4 28.7 355 153-564 14-373 (477)
28 1jl5_A Outer protein YOPM; leu 100.0 3.2E-38 1.1E-42 341.0 24.2 343 74-482 10-352 (454)
29 1o6v_A Internalin A; bacterial 100.0 5.9E-37 2E-41 334.0 32.2 345 75-482 46-390 (466)
30 1o6v_A Internalin A; bacterial 100.0 5.7E-37 1.9E-41 334.1 31.1 343 127-519 47-389 (466)
31 2id5_A Lingo-1, leucine rich r 100.0 9.7E-36 3.3E-40 325.9 29.7 317 79-432 15-333 (477)
32 3o6n_A APL1; leucine-rich repe 100.0 1.1E-35 3.7E-40 316.5 28.3 291 125-459 44-334 (390)
33 1jl5_A Outer protein YOPM; leu 100.0 1.8E-35 6E-40 319.5 29.4 373 48-482 11-411 (454)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-34 6.2E-39 311.9 27.4 313 96-458 37-354 (457)
35 4fmz_A Internalin; leucine ric 100.0 7.1E-34 2.4E-38 297.6 30.0 307 122-480 40-346 (347)
36 3o6n_A APL1; leucine-rich repe 100.0 3E-34 1E-38 305.4 27.3 287 100-404 44-331 (390)
37 3oja_B Anopheles plasmodium-re 100.0 2.7E-34 9.2E-39 322.5 27.7 291 125-459 50-340 (597)
38 4fmz_A Internalin; leucine ric 100.0 9.7E-34 3.3E-38 296.6 28.3 308 96-456 39-346 (347)
39 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-33 8.1E-38 303.1 27.5 318 113-482 29-354 (457)
40 3oja_B Anopheles plasmodium-re 100.0 4.4E-33 1.5E-37 312.6 27.2 309 100-433 50-359 (597)
41 3zyj_A Leucine-rich repeat-con 100.0 3.1E-32 1.1E-36 294.4 28.1 291 249-572 46-342 (440)
42 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-32 2E-36 281.0 26.4 294 128-454 35-331 (332)
43 3zyi_A Leucine-rich repeat-con 100.0 6.5E-32 2.2E-36 293.0 27.4 290 250-572 58-353 (452)
44 1xku_A Decorin; proteoglycan, 100.0 2.3E-31 7.9E-36 276.3 29.6 296 127-454 32-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-31 5.3E-36 277.8 24.8 286 102-402 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 9.1E-31 3.1E-35 271.8 27.5 286 76-401 32-329 (330)
47 2z66_A Variable lymphocyte rec 100.0 8.5E-31 2.9E-35 269.0 22.4 285 250-563 11-303 (306)
48 1ozn_A Reticulon 4 receptor; N 100.0 6.2E-30 2.1E-34 259.7 23.6 263 275-568 14-282 (285)
49 1z7x_W Ribonuclease inhibitor; 100.0 2E-32 6.9E-37 298.3 2.2 354 101-456 3-411 (461)
50 1z7x_W Ribonuclease inhibitor; 100.0 9.3E-33 3.2E-37 301.0 -1.1 384 126-519 3-441 (461)
51 2z80_A TOLL-like receptor 2, v 100.0 1.3E-29 4.6E-34 265.6 22.7 307 126-554 31-343 (353)
52 2z80_A TOLL-like receptor 2, v 100.0 1.9E-28 6.5E-33 256.8 19.6 273 79-382 35-316 (353)
53 1p9a_G Platelet glycoprotein I 100.0 2.9E-27 9.8E-32 239.8 24.0 217 293-533 7-223 (290)
54 3zyj_A Leucine-rich repeat-con 100.0 2.3E-27 8E-32 256.2 24.8 245 104-357 46-291 (440)
55 3zyi_A Leucine-rich repeat-con 100.0 3.6E-27 1.2E-31 255.7 24.7 245 104-357 57-302 (452)
56 2o6q_A Variable lymphocyte rec 99.9 2.4E-26 8.3E-31 231.0 24.9 240 299-566 19-261 (270)
57 2z66_A Variable lymphocyte rec 99.9 2.1E-27 7.2E-32 243.7 17.2 229 127-358 29-261 (306)
58 1ozn_A Reticulon 4 receptor; N 99.9 3.7E-27 1.3E-31 239.2 18.8 224 104-334 14-238 (285)
59 2z62_A TOLL-like receptor 4, v 99.9 2E-26 6.9E-31 232.6 22.1 235 277-533 12-253 (276)
60 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-25 4.1E-30 249.9 29.0 265 102-440 41-305 (622)
61 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-27 8.1E-32 243.6 13.7 229 95-356 70-302 (313)
62 3g06_A SSPH2 (leucine-rich rep 99.9 2.4E-25 8.2E-30 247.5 30.0 265 75-388 40-305 (622)
63 3ogk_B Coronatine-insensitive 99.9 2.5E-28 8.7E-33 274.7 4.1 400 47-457 72-527 (592)
64 1ogq_A PGIP-2, polygalacturona 99.9 7E-27 2.4E-31 240.1 13.9 251 101-381 50-306 (313)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-27 9.6E-32 243.8 5.6 267 151-460 11-280 (317)
66 3ogk_B Coronatine-insensitive 99.9 3.1E-28 1.1E-32 274.0 -2.3 374 99-482 110-528 (592)
67 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-27 8.6E-32 244.1 4.3 256 103-399 12-270 (317)
68 2v9t_B SLIT homolog 2 protein 99.9 1.3E-24 4.3E-29 210.9 18.8 197 348-572 14-213 (220)
69 2o6q_A Variable lymphocyte rec 99.9 1E-23 3.4E-28 211.9 22.5 200 77-284 18-217 (270)
70 1wwl_A Monocyte differentiatio 99.9 1.9E-26 6.4E-31 237.0 1.9 134 96-235 38-186 (312)
71 2z62_A TOLL-like receptor 4, v 99.9 7.3E-24 2.5E-28 213.8 20.4 208 101-334 28-237 (276)
72 4fcg_A Uncharacterized protein 99.9 6.2E-24 2.1E-28 219.4 20.1 228 197-458 80-316 (328)
73 3m19_A Variable lymphocyte rec 99.9 1.7E-23 6E-28 207.7 22.4 191 322-533 15-208 (251)
74 1wwl_A Monocyte differentiatio 99.9 4.5E-26 1.5E-30 234.2 3.2 177 73-257 41-239 (312)
75 2p1m_B Transport inhibitor res 99.9 8.8E-27 3E-31 262.3 -5.4 373 99-484 103-523 (594)
76 2v70_A SLIT-2, SLIT homolog 2 99.9 2.9E-23 1E-27 201.3 18.9 196 348-571 14-213 (220)
77 2p1m_B Transport inhibitor res 99.9 1.3E-26 4.4E-31 260.9 -6.5 402 96-517 61-518 (594)
78 4fcg_A Uncharacterized protein 99.9 4.6E-23 1.6E-27 213.0 20.0 229 245-484 80-318 (328)
79 3oja_A Leucine-rich immune mol 99.9 1.5E-24 5E-29 236.4 9.1 236 173-451 33-270 (487)
80 2xwt_C Thyrotropin receptor; s 99.9 1.8E-23 6E-28 206.1 16.0 207 88-306 22-236 (239)
81 3oja_A Leucine-rich immune mol 99.9 5.3E-24 1.8E-28 232.0 12.0 236 100-353 33-270 (487)
82 2xwt_C Thyrotropin receptor; s 99.9 4E-23 1.4E-27 203.5 16.0 191 113-313 22-221 (239)
83 3rfs_A Internalin B, repeat mo 99.9 2.3E-22 7.8E-27 202.1 21.5 194 318-531 38-232 (272)
84 1p9a_G Platelet glycoprotein I 99.9 2E-22 6.7E-27 204.2 21.0 204 267-481 5-209 (290)
85 4ay9_X Follicle-stimulating ho 99.9 4.8E-23 1.6E-27 215.1 16.8 242 104-377 12-256 (350)
86 4glp_A Monocyte differentiatio 99.9 8.1E-23 2.8E-27 209.7 15.1 229 48-286 64-308 (310)
87 3rfs_A Internalin B, repeat mo 99.9 1.1E-22 3.7E-27 204.5 15.5 176 75-257 41-216 (272)
88 2xot_A Amphoterin-induced prot 99.9 1.3E-22 4.3E-27 212.8 15.6 207 324-554 21-234 (361)
89 4ay9_X Follicle-stimulating ho 99.9 4.2E-22 1.4E-26 207.9 19.3 239 78-330 12-255 (350)
90 1h6u_A Internalin H; cell adhe 99.9 2.6E-22 9E-27 205.4 15.1 195 271-484 40-234 (308)
91 3m19_A Variable lymphocyte rec 99.9 4.5E-21 1.5E-25 190.2 19.7 175 77-257 16-190 (251)
92 1h6u_A Internalin H; cell adhe 99.9 1.3E-21 4.5E-26 200.2 14.9 198 97-314 37-234 (308)
93 3e6j_A Variable lymphocyte rec 99.9 1.2E-20 4E-25 184.2 20.4 197 347-564 21-220 (229)
94 4fdw_A Leucine rich hypothetic 99.9 1.9E-20 6.4E-25 197.8 22.5 263 100-379 112-382 (401)
95 3goz_A Leucine-rich repeat-con 99.9 2.6E-22 8.8E-27 210.7 7.1 255 106-384 3-301 (362)
96 4fs7_A Uncharacterized protein 99.8 2.4E-20 8.1E-25 198.0 20.8 317 88-451 58-374 (394)
97 2wfh_A SLIT homolog 2 protein 99.8 8.5E-21 2.9E-25 179.7 15.3 170 371-571 14-186 (193)
98 3goz_A Leucine-rich repeat-con 99.8 3.7E-22 1.2E-26 209.5 6.1 253 131-406 3-299 (362)
99 4fdw_A Leucine rich hypothetic 99.8 5.7E-20 1.9E-24 194.1 22.2 260 126-401 113-380 (401)
100 1w8a_A SLIT protein; signaling 99.8 2.3E-20 8E-25 176.7 17.1 174 370-572 11-187 (192)
101 4glp_A Monocyte differentiatio 99.8 4.3E-21 1.5E-25 196.8 12.7 227 102-359 65-308 (310)
102 3sb4_A Hypothetical leucine ri 99.8 1.2E-21 4.1E-26 202.8 8.5 99 295-396 225-326 (329)
103 3sb4_A Hypothetical leucine ri 99.8 6.6E-21 2.3E-25 197.1 10.9 217 149-373 100-327 (329)
104 4fs7_A Uncharacterized protein 99.8 1.5E-19 5.2E-24 191.8 21.7 306 71-399 67-374 (394)
105 3cvr_A Invasion plasmid antige 99.8 4.5E-20 1.5E-24 202.5 16.5 221 273-532 60-294 (571)
106 2ast_B S-phase kinase-associat 99.8 1.1E-20 3.7E-25 196.4 7.8 247 103-359 49-307 (336)
107 2ca6_A RAN GTPase-activating p 99.8 7.9E-22 2.7E-26 209.1 -1.3 237 96-335 27-317 (386)
108 2ca6_A RAN GTPase-activating p 99.8 2.9E-21 9.9E-26 204.7 1.6 139 321-459 159-319 (386)
109 2o6s_A Variable lymphocyte rec 99.8 4.1E-19 1.4E-23 170.7 15.2 174 78-265 10-183 (208)
110 2o6s_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 171.0 14.1 170 104-286 10-179 (208)
111 4gt6_A Cell surface protein; l 99.8 3.5E-18 1.2E-22 181.3 22.5 322 88-453 50-388 (394)
112 2ast_B S-phase kinase-associat 99.8 6.5E-20 2.2E-24 190.5 8.0 209 270-487 91-313 (336)
113 2v9t_B SLIT homolog 2 protein 99.8 1.6E-18 5.3E-23 167.9 17.0 153 78-236 14-166 (220)
114 1h6t_A Internalin B; cell adhe 99.8 1.5E-19 5E-24 183.3 10.1 173 97-286 42-214 (291)
115 2xot_A Amphoterin-induced prot 99.8 8E-19 2.7E-23 183.8 16.1 174 78-257 21-200 (361)
116 1h6t_A Internalin B; cell adhe 99.8 9.1E-19 3.1E-23 177.4 14.6 174 73-265 44-217 (291)
117 2v70_A SLIT-2, SLIT homolog 2 99.8 4.2E-18 1.4E-22 164.9 16.9 153 78-236 14-167 (220)
118 4gt6_A Cell surface protein; l 99.8 1.5E-17 5.1E-22 176.4 22.1 336 113-480 50-391 (394)
119 3cvr_A Invasion plasmid antige 99.8 5.2E-18 1.8E-22 186.1 19.1 181 102-336 60-245 (571)
120 3e6j_A Variable lymphocyte rec 99.8 1.7E-17 5.7E-22 161.8 17.3 153 77-236 21-173 (229)
121 1m9s_A Internalin B; cell inva 99.8 7.4E-19 2.5E-23 195.1 8.5 175 97-288 39-213 (605)
122 1m9s_A Internalin B; cell inva 99.7 9.2E-18 3.2E-22 186.3 15.4 177 268-461 39-215 (605)
123 1xeu_A Internalin C; cellular 99.7 3.4E-18 1.2E-22 170.3 9.3 174 66-257 10-183 (263)
124 4ezg_A Putative uncharacterize 99.7 3.1E-17 1.1E-21 156.0 14.6 151 98-257 41-192 (197)
125 4ezg_A Putative uncharacterize 99.7 1.9E-17 6.5E-22 157.4 12.7 153 73-236 42-195 (197)
126 1xeu_A Internalin C; cellular 99.7 6.4E-18 2.2E-22 168.4 9.4 168 273-482 20-187 (263)
127 4h09_A Hypothetical leucine ri 99.7 9.9E-16 3.4E-20 161.6 24.0 263 73-353 44-318 (379)
128 4h09_A Hypothetical leucine ri 99.7 3.4E-15 1.2E-19 157.5 24.6 316 96-445 41-358 (379)
129 2o6r_A Variable lymphocyte rec 99.7 5.9E-16 2E-20 144.3 14.2 125 391-533 28-153 (177)
130 3g39_A Variable lymphocyte rec 99.7 6.2E-16 2.1E-20 142.9 14.0 150 393-565 11-161 (170)
131 2r9u_A Variable lymphocyte rec 99.6 2.4E-15 8.3E-20 139.4 14.3 119 394-533 15-134 (174)
132 1w8a_A SLIT protein; signaling 99.6 1.7E-15 5.7E-20 143.2 13.4 129 104-236 11-140 (192)
133 2wfh_A SLIT homolog 2 protein 99.6 2.2E-15 7.6E-20 142.3 14.2 127 104-235 13-139 (193)
134 2o6r_A Variable lymphocyte rec 99.6 5.9E-15 2E-19 137.6 15.5 132 103-238 9-140 (177)
135 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.7E-20 141.2 9.6 134 75-214 24-163 (168)
136 2ell_A Acidic leucine-rich nuc 99.6 1.9E-15 6.6E-20 139.5 11.1 136 100-239 23-164 (168)
137 1dce_A Protein (RAB geranylger 99.6 2.6E-17 8.9E-22 181.6 -5.1 108 368-484 442-550 (567)
138 1dce_A Protein (RAB geranylger 99.6 2E-17 7E-22 182.5 -6.6 197 270-474 347-567 (567)
139 2je0_A Acidic leucine-rich nuc 99.6 4.4E-15 1.5E-19 134.1 8.5 125 101-229 17-147 (149)
140 1a9n_A U2A', U2A'; complex (nu 99.5 5.7E-15 1.9E-19 137.5 7.3 133 96-233 14-151 (176)
141 2je0_A Acidic leucine-rich nuc 99.5 1.2E-14 4.1E-19 131.2 8.6 127 125-254 16-148 (149)
142 4b8c_D Glucose-repressible alc 99.5 3.6E-15 1.2E-19 169.8 5.9 153 312-477 215-369 (727)
143 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.7E-19 134.3 9.1 108 368-481 43-154 (176)
144 4b8c_D Glucose-repressible alc 99.5 4.2E-15 1.4E-19 169.3 5.1 154 117-282 215-369 (727)
145 2ifg_A High affinity nerve gro 99.5 7.7E-14 2.6E-18 145.2 11.8 133 395-555 12-146 (347)
146 3g39_A Variable lymphocyte rec 99.4 7.7E-13 2.6E-17 122.0 12.6 107 128-237 11-117 (170)
147 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 121.2 13.2 107 129-238 15-121 (174)
148 3un9_A NLR family member X1; l 99.3 4.7E-14 1.6E-18 147.3 -2.1 160 296-456 72-252 (372)
149 1ds9_A Outer arm dynein; leuci 99.3 3.8E-15 1.3E-19 141.6 -10.9 112 96-213 43-155 (198)
150 1ds9_A Outer arm dynein; leuci 99.3 1.3E-14 4.4E-19 137.9 -9.7 110 341-457 44-154 (198)
151 3un9_A NLR family member X1; l 99.2 5.1E-13 1.7E-17 139.4 -0.5 167 321-487 72-259 (372)
152 3rfe_A Platelet glycoprotein I 99.2 3.7E-11 1.3E-15 104.5 7.1 100 447-570 12-116 (130)
153 2ifg_A High affinity nerve gro 99.2 1.1E-10 3.7E-15 121.3 11.4 104 130-236 12-117 (347)
154 2ra8_A Uncharacterized protein 98.7 1.8E-08 6.2E-13 104.0 6.0 86 390-478 251-341 (362)
155 2ra8_A Uncharacterized protein 98.6 2.2E-08 7.5E-13 103.4 6.5 160 341-516 168-341 (362)
156 1io0_A Tropomodulin; LRR prote 98.5 3E-08 1E-12 92.3 1.7 68 366-433 64-137 (185)
157 3rfe_A Platelet glycoprotein I 98.5 1.6E-07 5.5E-12 81.4 6.2 66 573-651 1-68 (130)
158 1io0_A Tropomodulin; LRR prote 98.4 3.5E-08 1.2E-12 91.9 1.2 116 365-480 34-164 (185)
159 3rw6_A Nuclear RNA export fact 98.2 6.4E-07 2.2E-11 87.6 3.3 82 364-449 167-257 (267)
160 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.5E-11 79.0 4.2 94 40-137 51-150 (176)
161 3e4g_A ATP synthase subunit S, 98.0 1.5E-06 5.2E-11 78.6 2.6 83 102-185 62-150 (176)
162 3rw6_A Nuclear RNA export fact 97.8 1.7E-05 5.8E-10 77.5 5.5 61 320-380 169-233 (267)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 8.5E-05 2.9E-09 68.5 4.2 87 367-453 41-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00011 3.9E-09 67.6 4.9 91 364-454 67-168 (197)
165 2lz0_A Uncharacterized protein 94.1 0.095 3.3E-06 42.2 6.1 48 88-137 7-54 (100)
166 2lz0_A Uncharacterized protein 91.3 0.26 9E-06 39.6 5.1 47 113-160 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-58 Score=533.46 Aligned_cols=624 Identities=20% Similarity=0.172 Sum_probs=368.2
Q ss_pred EeccCCeEEEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHh-hhcCcccccEEEeecCCCCccCCCCccC
Q psy8029 19 EIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLF-SKLNITTINTLAFSNSPSNVGVLSPPYF 97 (693)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~i~~l~~~~~ 97 (693)
..|||.|.+|.|. . ++|+.|+++++.+... +..+. ....++.|+.++++.+ .+..++ ..|
T Consensus 36 ~~~~C~w~gv~C~--~-------------~~v~~L~L~~~~l~g~-~~~l~~~l~~L~~L~~l~~~~~--~~~~l~-~~~ 96 (768)
T 3rgz_A 36 NKNPCTFDGVTCR--D-------------DKVTSIDLSSKPLNVG-FSAVSSSLLSLTGLESLFLSNS--HINGSV-SGF 96 (768)
T ss_dssp TSCGGGSTTEEEE--T-------------TEEEEEECTTSCCCEE-HHHHHHHTTTCTTCCEEECTTS--CEEECC-CCC
T ss_pred CCCCcCCcceEEC--C-------------CcEEEEECCCCCcCCc-cCccChhHhccCcccccCCcCC--CcCCCc-hhh
Confidence 4689999999995 1 4688889988887653 11111 2234566666666655 444433 457
Q ss_pred CCcccccEEEccCCcCccccccc--ccCCCCCCcEEEeeCCcccc-cCcccCCCCCCCcEEEcCCCCCCccChhh---hC
Q psy8029 98 DGLHFVKHILLSHNKEITGLHKD--IFKGTPQLESLNLRGNSITE-LYSGVFQYVPKLQVLDLGSNDVAYMDPEI---FK 171 (693)
Q Consensus 98 ~~l~~L~~L~Ls~n~~i~~~~~~--~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~ 171 (693)
+++++|++|+|++| .+++..+. .++++++|++|++++|.+++ ++...+.++++|++|++++|.+++..+.. +.
T Consensus 97 ~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 97 KCSASLTSLDLSRN-SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175 (768)
T ss_dssp CCCTTCCEEECCSS-EEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred ccCCCCCEEECCCC-cCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhc
Confidence 77777777777777 66653333 56677777777777777665 33333366777777777777776666555 56
Q ss_pred CCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEE
Q psy8029 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251 (693)
Q Consensus 172 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 251 (693)
++++|++|++++|++++..+ +..+++|++|++++|.+++..+. +..+++|++|++++|.++...+..|..+++|++|
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp CCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred cCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 66666666666666655443 25566666666666666654444 5666666666666666665444555556666666
Q ss_pred EEecCCCc--------------------cc-ccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC
Q psy8029 252 KISYHKDS--------------------LK-ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310 (693)
Q Consensus 252 ~l~~n~~~--------------------~~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~ 310 (693)
++++|.+. +. .+|...+..+++|++|++++|.+.+..+..|..+++|++|++++| .+.
T Consensus 253 ~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~ 331 (768)
T 3rgz_A 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFS 331 (768)
T ss_dssp ECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS-EEE
T ss_pred ECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC-ccc
Confidence 66555532 11 444443334467777777777776655566677777777777777 443
Q ss_pred -cCChhhhcCCCCCcEEEccCCCCC-CCChhhhccCc-cCceEeccCCcCcc-ccCc-c--CCCCCCeEeCCCCcccccc
Q psy8029 311 -SLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLK-ELYTLNLKNNQLEN-ITSL-V--GLSGLNSLDLSWNQLEQIN 383 (693)
Q Consensus 311 -~l~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~-~L~~L~Ls~n~l~~-l~~~-~--~l~~L~~L~Ls~n~l~~~~ 383 (693)
.+|...|..+++|++|++++|.++ .+|.. +..++ +|+.|++++|++++ ++.. . .+++|++|++++|.+++..
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred CcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 677666677777777777777766 44443 33443 56666666665543 2221 1 1455666666666666655
Q ss_pred ccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCccc
Q psy8029 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD 463 (693)
Q Consensus 384 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 463 (693)
+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGT----IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CHHHhcCCCCCEEECcCCcccCc----ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 65666666666666666665543 23344445555555555555554444444445555555555555554444444
Q ss_pred ccCCCccEEECCCCCCceeeccchhhhcccCC---CCCc-------cccccccCcEEEcCCCcccccCCcHHHHHHHhcc
Q psy8029 464 SIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQD---PNED-------STMVARSANIVILNDNPIACNCSNYDLIRFVSKK 533 (693)
Q Consensus 464 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~---~~~~-------~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~ 533 (693)
..+++|+.|++++|++++..+.++..++.... .... .....++++.+++++|++.+.++..++.......
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 44444555555555544443333333221110 0000 0011256889999999998877654432110000
Q ss_pred cccce-eeeeeeccCce--eecCC------CC---cccccc--------CCCCCcccCCCCCCCcEeeecCCCceEEEEc
Q psy8029 534 MTKTV-YQMLELVTDNL--ECFGN------AG---VGINSV--------RPENLTCDTKPCPARCYCNFSPYYSIMSVNC 593 (693)
Q Consensus 534 ~~~~~-~~~~~~~~~~~--~c~~~------~~---~~~~~l--------~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~l 593 (693)
..... ........... .|... .+ ..+..+ ..+.+.... |. .+..+..++.+|+
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~---~~----~~~~l~~L~~LdL 639 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT---SP----TFDNNGSMMFLDM 639 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC---CC----SCSSSBCCCEEEC
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC---ch----hhhccccccEEEC
Confidence 00000 00000000000 00000 00 000000 001111111 11 1334567899999
Q ss_pred CCCCcc-cCCCCCCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccc-cccC---cCCCccEEEeeCC
Q psy8029 594 SSASLT-HMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS-HVDT---MYPYLNHLELIDS 668 (693)
Q Consensus 594 s~n~l~-~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~---~~~~L~~L~l~~N 668 (693)
++|+++ .+|..++.+ ..++.|+|++|+++|.+|..++++++|+.|||++|+++ .||. .+++|++||+++|
T Consensus 640 s~N~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSM-----PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CSSCCBSCCCGGGGGC-----TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cCCcccccCCHHHhcc-----ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 999999 899988887 78899999999999999999999999999999999999 7887 6789999999999
Q ss_pred ceeEecCCCcccccc
Q psy8029 669 EKIICHGSTKPLNGI 683 (693)
Q Consensus 669 ~l~~~~~~~~~~~~~ 683 (693)
+++...+++..+...
T Consensus 715 ~l~g~iP~~~~~~~~ 729 (768)
T 3rgz_A 715 NLSGPIPEMGQFETF 729 (768)
T ss_dssp EEEEECCSSSSGGGS
T ss_pred cccccCCCchhhccC
Confidence 999887777665543
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-55 Score=506.19 Aligned_cols=567 Identities=22% Similarity=0.253 Sum_probs=473.4
Q ss_pred EEEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccE
Q psy8029 26 VGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKH 105 (693)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~ 105 (693)
..++|.... +..+|..-.+++++|+++++.+....... ..+++.|+.|+++++ .++.+.+.+|+++++|++
T Consensus 7 ~~~~cs~~~----L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 7 EVADCSHLK----LTQVPDDLPTNITVLNLTHNQLRRLPAAN---FTRYSQLTSLDVGFN--TISKLEPELCQKLPMLKV 77 (680)
T ss_dssp SEEECCSSC----CSSCCSCSCTTCSEEECCSSCCCCCCGGG---GGGGTTCSEEECCSS--CCCCCCTTHHHHCTTCCE
T ss_pred CeeECCCCC----ccccccccCCCCcEEECCCCCCCCcCHHH---HhCCCcCcEEECCCC--ccCccCHHHHhcccCcCE
Confidence 357786532 34566544478999999999987654322 235788999999999 999998899999999999
Q ss_pred EEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCC
Q psy8029 106 ILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185 (693)
Q Consensus 106 L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 185 (693)
|++++| .++.+++.+|+++++|++|++++|.++++++..|+++++|++|++++|.++++.+..+.++++|++|++++|+
T Consensus 78 L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 78 LNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred EECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 999999 9999999899999999999999999999998889999999999999999999988889999999999999999
Q ss_pred CCCCChhhcC--CCCCCcEEECcCCCCCcCCCCcCCCC---------------------------CCCcEEEcCCCcccc
Q psy8029 186 LINLTRAIFN--NVPNLRSLDISGNNISILPSGVFSDL---------------------------RKLQTFYANSNRFQM 236 (693)
Q Consensus 186 l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l---------------------------~~L~~L~l~~n~l~~ 236 (693)
++++.+..+. .+++|++|++++|.++++++..|..+ ++|+.|++++|.+..
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence 9998887654 56899999999999999888766554 567778888888888
Q ss_pred CChhhhhcccC--ceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC----
Q psy8029 237 FPKDLFAEMKY--LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT---- 310 (693)
Q Consensus 237 ~~~~~~~~~~~--L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~---- 310 (693)
+.+..|..++. |++|++++|. +..+++..|..+++|++|++++|.+.++++..|.++++|+.|++++| ..+
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~-~~~~~~~ 313 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-FTKQSIS 313 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC-BCCC---
T ss_pred cChhHhhccCcCCCCEEECCCCC--cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch-hhhcccc
Confidence 77777877765 9999999998 55677677899999999999999999988888999999999999876 322
Q ss_pred -----cCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCcc--ccCc----cCCCCCCeEeCCCCcc
Q psy8029 311 -----SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN--ITSL----VGLSGLNSLDLSWNQL 379 (693)
Q Consensus 311 -----~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--l~~~----~~l~~L~~L~Ls~n~l 379 (693)
.++...|..+++|++|++++|.++.+++..|..+++|++|++++|.+.. ++.. ...++|+.|++++|.+
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 3334467889999999999999999988889999999999999997543 4332 2336899999999999
Q ss_pred ccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCc--c
Q psy8029 380 EQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS--F 457 (693)
Q Consensus 380 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~ 457 (693)
+++.+.+|..+++|++|++++|.+++.. ....+.++++|++|++++|.++++.+..|..+++|+.|++++|.++ +
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQEL---TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEEEC---CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCcccc---CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence 9999999999999999999999997542 2357888999999999999999999999999999999999999987 4
Q ss_pred CCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccc
Q psy8029 458 IPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKT 537 (693)
Q Consensus 458 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~ 537 (693)
..+..+..+++|+.|++++|+++.+++..+..+ .+++.+++++|.+..- ..
T Consensus 471 ~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l--------------~~L~~L~Ls~N~l~~~--------------~~- 521 (680)
T 1ziw_A 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGL--------------EKLEILDLQHNNLARL--------------WK- 521 (680)
T ss_dssp CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------------TTCCEEECCSSCCGGG--------------GS-
T ss_pred cCCcccccCCCCCEEECCCCCCCcCChhhhccc--------------cccCEEeCCCCCcccc--------------ch-
Confidence 456668889999999999999999887777655 4588999999986410 00
Q ss_pred eeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccCCCC-CCCCccccCceE
Q psy8029 538 VYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDY-LPVTYEDKKATS 616 (693)
Q Consensus 538 ~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~ip~~-~~~l~~~~~~~l 616 (693)
+..|.+ .. ..+..+..++.+++++|+++.+|.. +..+ ..+
T Consensus 522 -------------~~~~~~-~~--------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l-----~~L 562 (680)
T 1ziw_A 522 -------------HANPGG-PI--------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDL-----FEL 562 (680)
T ss_dssp -------------TTSTTS-CC--------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTC
T ss_pred -------------hhccCC-cc--------------------hhhcCCCCCCEEECCCCCCCCCCHHHcccc-----cCc
Confidence 000000 00 0123355689999999999999874 5555 678
Q ss_pred EEEEecCCccccCCCCCCcccccCcEEEccCCccccccC-----cCCCccEEEeeCCceeEecCCC
Q psy8029 617 IQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT-----MYPYLNHLELIDSEKIICHGST 677 (693)
Q Consensus 617 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~~L~~L~l~~N~l~~~~~~~ 677 (693)
+.|+|++|+++++++..|.++++|+.|+|++|+|+.++. .+++|+.|++++|+ +.|++..
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~-~~c~c~~ 627 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP-FDCTCES 627 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC-CCBCCCC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC-cccCCcc
Confidence 999999999999999999999999999999999998877 25899999999999 6788774
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.8e-53 Score=479.63 Aligned_cols=504 Identities=21% Similarity=0.305 Sum_probs=342.6
Q ss_pred EEEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccE
Q psy8029 26 VGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKH 105 (693)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~ 105 (693)
..++|... ++..+|..-.+.+++|+++++.+...... ...++++|++|++++| .++.+.+.+|+++++|++
T Consensus 15 ~~~~c~~~----~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~ 85 (606)
T 3t6q_A 15 KTYNCENL----GLNEIPGTLPNSTECLEFSFNVLPTIQNT---TFSRLINLTFLDLTRC--QIYWIHEDTFQSQHRLDT 85 (606)
T ss_dssp TEEECTTS----CCSSCCTTSCTTCCEEECTTCCCSEECTT---TSTTCTTCSEEECTTC--CCCEECTTTTTTCTTCCE
T ss_pred ceEECCCC----CcccCcCCCCCcCcEEEccCCccCcCChh---HhccCccceEEECCCC--ccceeChhhccCccccCe
Confidence 35778543 34566665556899999999998754322 2346888999999999 999988889999999999
Q ss_pred EEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCC
Q psy8029 106 ILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185 (693)
Q Consensus 106 L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 185 (693)
|++++| .++.+++..|+++++|++|++++|.++++++..|+++++|++|++++|.+.++....+..+++|++|++++|+
T Consensus 86 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 86 LVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp EECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred eeCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc
Confidence 999999 9999888889999999999999999998877778999999999999999988765556668999999999999
Q ss_pred CCCCChhhcCCCCCCc--EEECcCCCCCcCCCCcCCCC------------------------------------------
Q psy8029 186 LINLTRAIFNNVPNLR--SLDISGNNISILPSGVFSDL------------------------------------------ 221 (693)
Q Consensus 186 l~~~~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l------------------------------------------ 221 (693)
++++.+..|+.+++|+ +|++++|.++++++..|...
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 9988888888888888 78888888777665544321
Q ss_pred ---------CCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccc
Q psy8029 222 ---------RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF 292 (693)
Q Consensus 222 ---------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 292 (693)
.+|+.|++++|.++.+++..|..+++|++|++++|. +..+|.+ +..+++|++|++++|.+..+++..+
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH--LSELPSG-LVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC--CSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc--cCCCChh-hcccccCCEEECccCCcCcCchhhh
Confidence 045666666666666666666677777777777776 4466654 5666677777777776666655555
Q ss_pred cCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCC--hhhhccCccCceEeccCCcCccccC--------
Q psy8029 293 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP--ENLFESLKELYTLNLKNNQLENITS-------- 362 (693)
Q Consensus 293 ~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~Ls~n~l~~l~~-------- 362 (693)
..+++|+.|++++|...+.++...|..+++|++|++++|.++.++ ...+..+++|++|++++|++.+++.
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 666666666666662223455544555555555555555554432 2234444555555555554444321
Q ss_pred -------------------ccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcE
Q psy8029 363 -------------------LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLET 423 (693)
Q Consensus 363 -------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~ 423 (693)
...+++|++|++++|.+.+..+..|..+++|++|++++|.+++.... ....+..+++|++
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEI 480 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCE
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-cchhhccCCCccE
Confidence 13445555555555555555555555555555555555555432100 1233555566666
Q ss_pred EECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccc
Q psy8029 424 INLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMV 503 (693)
Q Consensus 424 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~ 503 (693)
|++++|.++++++..|..+++|+.|++++|++++.++..+..++.| .|++++|+++++++..+..+
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l------------- 546 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL------------- 546 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH-------------
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccC-------------
Confidence 6666666666655556666666666666666666555555556666 66666666665555555444
Q ss_pred cccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCC
Q psy8029 504 ARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRP 564 (693)
Q Consensus 504 ~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~ 564 (693)
++++.+++++|||.|+|+..||.+|++..... ......+.|..| +|..+.+++.
T Consensus 547 -~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~------~~~~~~~~C~~p~~~~g~~l~~~~~ 603 (606)
T 3t6q_A 547 -SQQRTINLRQNPLDCTCSNIYFLEWYKENMQK------LEDTEDTLCENPPLLRGVRLSDVTL 603 (606)
T ss_dssp -HTSSEEECTTCCEECSGGGHHHHHHHHHCGGG------EECGGGCBEEESGGGTTCBGGGCCC
T ss_pred -CCCCEEeCCCCCccccCCcHHHHHHHHhCccc------ccCCCCCeeCCchHhCCCeeeeeec
Confidence 45889999999999999999999999875221 124457899988 7888877753
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-53 Score=492.84 Aligned_cols=590 Identities=20% Similarity=0.215 Sum_probs=364.3
Q ss_pred CCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCcc-CCCcccccEEEccCCcCcccccccc---
Q psy8029 46 NLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPY-FDGLHFVKHILLSHNKEITGLHKDI--- 121 (693)
Q Consensus 46 ~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~-~~~l~~L~~L~Ls~n~~i~~~~~~~--- 121 (693)
.++++++|++++|.+... ++.......+++|++|++++| .++...+.. +.++++|++|++++| .+++..+..
T Consensus 98 ~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 173 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSN--TLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVL 173 (768)
T ss_dssp CCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSS--EEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHH
T ss_pred cCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCC--ccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhh
Confidence 346789999999987642 222112345788999999988 777443333 478888888888888 888766655
Q ss_pred cCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCc
Q psy8029 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLR 201 (693)
Q Consensus 122 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 201 (693)
+.++++|++|++++|.+++..+ +..+++|++|++++|.+.+..+. +.++++|++|++++|++++..+..|+.+++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred hccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence 6777777777777777766443 36677777777777777765555 67777777777777777766666677777777
Q ss_pred EEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccc-cCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcC
Q psy8029 202 SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG 280 (693)
Q Consensus 202 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~ 280 (693)
+|++++|.+++..+.. .+++|++|++++|.++ .++...+..+++|++|++++|. +....+..|..+++|++|+++
T Consensus 251 ~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH--FYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp EEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE--EEECCCGGGGGCTTCCEEECC
T ss_pred EEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc--CCCccchHHhcCCCccEEECC
Confidence 7777777666443322 4555555555555555 3333322223555555555554 222222234455555555555
Q ss_pred CCCCc-ccCcccccCCCCccEEEecCCCCCC-cCChhh------------------------hcC--CCCCcEEEccCCC
Q psy8029 281 ESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTL------------------------FRD--CKKLVKLELQRNK 332 (693)
Q Consensus 281 ~n~l~-~~~~~~~~~~~~L~~L~l~~n~~l~-~l~~~~------------------------~~~--~~~L~~L~l~~n~ 332 (693)
+|.+. .++...+..+++|++|++++| .+. .+|..+ +.. +++|++|++++|.
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 55544 344444444555555555554 332 333221 111 4566666666666
Q ss_pred CCCCChhhhccCccCceEeccCCcCcc-ccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCccccccc
Q psy8029 333 LKYLPENLFESLKELYTLNLKNNQLEN-ITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY 410 (693)
Q Consensus 333 l~~~~~~~~~~~~~L~~L~Ls~n~l~~-l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 410 (693)
++...+..|..+++|+.|++++|++++ +|.. ..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---- 481 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE---- 481 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC----
T ss_pred cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc----
Confidence 653333445677777777777777765 3333 6677777777777777777777777777777777777777754
Q ss_pred CCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhh
Q psy8029 411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIK 490 (693)
Q Consensus 411 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 490 (693)
.+..+..+++|++|++++|++++..|.+++.+++|+.|++++|++++..+..+..+++|+.|++++|++++.-+..+...
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 35567777788888888888877777777778888888888888877666667777778888888887775444333222
Q ss_pred cccCCCCCccccccccCcEEEcCCCcccccCCcHHH-HHHHhcccccce-----eeeeeeccCceeecCC------CCcc
Q psy8029 491 AAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDL-IRFVSKKMTKTV-----YQMLELVTDNLECFGN------AGVG 558 (693)
Q Consensus 491 ~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~c~~~------~~~~ 558 (693)
...... ......+..++.++.....|..... ..+ .+..+..+ ........+.+.+..| ....
T Consensus 562 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 562 SGKIAA-----NFIAGKRYVYIKNDGMKKECHGAGNLLEF-QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp TTCBCC-----STTCSCEEEEEECCSCCTTCCSSEEEEEC-TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred cchhhh-----hcccccccccccccccccccccccccccc-ccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 111000 0001112233333332222211000 000 00000000 0011112223333333 1223
Q ss_pred ccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcc-cCCCCCCCCccccCceEEEEEecCCccccCCCCCCccc
Q psy8029 559 INSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLT-HMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESY 637 (693)
Q Consensus 559 ~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~-~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l 637 (693)
..++..+.+...++ . .+..+..++.+++++|+++ .+|+.++.+ ..++.|||++|+++|.+|..++++
T Consensus 636 ~LdLs~N~l~g~ip---~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L-----~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 636 FLDMSYNMLSGYIP---K----EIGSMPYLFILNLGHNDISGSIPDEVGDL-----RGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp EEECCSSCCBSCCC---G----GGGGCTTCCEEECCSSCCCSCCCGGGGGC-----TTCCEEECCSSCCEECCCGGGGGC
T ss_pred EEECcCCcccccCC---H----HHhccccCCEEeCcCCccCCCCChHHhCC-----CCCCEEECCCCcccCcCChHHhCC
Confidence 34444455443332 1 1344667899999999999 999998887 789999999999999999999999
Q ss_pred ccCcEEEccCCccc-cccC--cCCCccEEEeeCCc
Q psy8029 638 KLITDLDLSYNNIS-HVDT--MYPYLNHLELIDSE 669 (693)
Q Consensus 638 ~~L~~L~Ls~N~l~-~i~~--~~~~L~~L~l~~N~ 669 (693)
++|+.||+++|+++ .||. .+..+....+.||+
T Consensus 704 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp CCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred CCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence 99999999999999 7887 45566666777886
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-52 Score=480.18 Aligned_cols=568 Identities=19% Similarity=0.192 Sum_probs=449.2
Q ss_pred cEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcE
Q psy8029 51 NAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLES 130 (693)
Q Consensus 51 ~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~ 130 (693)
+.++.+++.+... +... .+.++.|+++++ .++.+++..|+++++|++|++++| .++++++.+|+++++|++
T Consensus 7 ~~~~cs~~~L~~i-----p~~~-~~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 7 EVADCSHLKLTQV-----PDDL-PTNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKV 77 (680)
T ss_dssp SEEECCSSCCSSC-----CSCS-CTTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCE
T ss_pred CeeECCCCCcccc-----cccc-CCCCcEEECCCC--CCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCE
Confidence 4566666666432 2222 267999999999 999999889999999999999999 999999999999999999
Q ss_pred EEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCC
Q psy8029 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210 (693)
Q Consensus 131 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 210 (693)
|++++|.++.+++.+|+++++|++|++++|.+.++++..|+++++|++|++++|++++..+..++.+++|++|++++|.+
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 99999999999998899999999999999999999988899999999999999999998888899999999999999999
Q ss_pred CcCCCCcCC--CCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCcc-ccCCCCCccEEEcCCCCCccc
Q psy8029 211 SILPSGVFS--DLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLNTVILGESSIAEL 287 (693)
Q Consensus 211 ~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~-~~~~l~~L~~L~l~~n~l~~~ 287 (693)
+++++..+. .+++|+.|++++|.++.+++..|..+++|+.+++.++.+........ .....++|+.|++++|.+.++
T Consensus 158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 988876543 56899999999999999999889999999999998876431111000 001347899999999999988
Q ss_pred CcccccCCCC--ccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCc------c
Q psy8029 288 PSDLFWNSTN--ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE------N 359 (693)
Q Consensus 288 ~~~~~~~~~~--L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~------~ 359 (693)
++..|.+++. |+.|++++| .+..+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|... .
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred ChhHhhccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 8888877754 999999999 888888777899999999999999999888878899999999999987544 2
Q ss_pred cc-----CccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccC--CCCCcEEECCCCCCC
Q psy8029 360 IT-----SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQ--CVNLETINLSYNRIS 432 (693)
Q Consensus 360 l~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--l~~L~~L~Ls~n~l~ 432 (693)
+| .+..+++|++|++++|.+.++.+..|.++++|++|++++|.+..... ....|.. .++|+.|++++|+++
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l--~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL--TNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE--CTTTTGGGTTSCCCEEECTTSCCC
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc--chhhhcccccCcCceEECCCCCCC
Confidence 33 22678999999999999999999999999999999999997653321 1233333 358999999999999
Q ss_pred cCChhHHhcCCCCcEEECCCCCCcc-CCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEE
Q psy8029 433 SLFDDWISSMTSLKELDLRHNNFSF-IPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVI 511 (693)
Q Consensus 433 ~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~ 511 (693)
++.+..|..+++|+.|++++|++++ +++..+..+++|+.|++++|+++.+.+..+... ++++.++
T Consensus 395 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--------------~~L~~L~ 460 (680)
T 1ziw_A 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV--------------PSLQRLM 460 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTC--------------TTCCEEE
T ss_pred eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcC--------------cccccch
Confidence 9988889999999999999999985 666778889999999999999998877776654 4578889
Q ss_pred cCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEE
Q psy8029 512 LNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSV 591 (693)
Q Consensus 512 l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l 591 (693)
+++|.+.-. +..+..+.. + ......++..+.+.. .|.. .+..+..++.+
T Consensus 461 l~~n~l~~~-----------~~~p~~~~~----------l---~~L~~L~Ls~N~l~~----i~~~---~~~~l~~L~~L 509 (680)
T 1ziw_A 461 LRRVALKNV-----------DSSPSPFQP----------L---RNLTILDLSNNNIAN----INDD---MLEGLEKLEIL 509 (680)
T ss_dssp CTTSCCBCT-----------TCSSCTTTT----------C---TTCCEEECCSSCCCC----CCTT---TTTTCTTCCEE
T ss_pred hcccccccc-----------ccCCccccc----------C---CCCCEEECCCCCCCc----CChh---hhccccccCEE
Confidence 988875310 000000000 0 011111121111110 0110 12335568999
Q ss_pred EcCCCCcccCCCC-----CCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccccccC----cCCCccE
Q psy8029 592 NCSSASLTHMPDY-----LPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT----MYPYLNH 662 (693)
Q Consensus 592 ~ls~n~l~~ip~~-----~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~L~~ 662 (693)
++++|+++.++.. ....|. .-..++.|+|++|+++.+++..|.++++|+.|+|++|+++.+|. .+++|+.
T Consensus 510 ~Ls~N~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 510 DLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp ECCSSCCGGGGSTTSTTSCCCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred eCCCCCccccchhhccCCcchhhc-CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 9999999866432 111111 12678999999999999998889999999999999999999987 4589999
Q ss_pred EEeeCCceeEecCC
Q psy8029 663 LELIDSEKIICHGS 676 (693)
Q Consensus 663 L~l~~N~l~~~~~~ 676 (693)
|++++|+++.+++.
T Consensus 589 L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 589 LNLQKNLITSVEKK 602 (680)
T ss_dssp EECTTSCCCBCCHH
T ss_pred EECCCCcCCccChh
Confidence 99999999988765
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-52 Score=468.70 Aligned_cols=516 Identities=19% Similarity=0.225 Sum_probs=380.1
Q ss_pred cccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEE
Q psy8029 76 TINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155 (693)
Q Consensus 76 ~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 155 (693)
.++.|+++++ .++.+.+.+|+++++|++|++++| .++.+.+.+|+++++|++|++++|+++.+++..|+++++|++|
T Consensus 34 ~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 34 STECLEFSFN--VLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TCCEEECTTC--CCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred cCcEEEccCC--ccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 4677777777 777777677777777777777777 7777777777777777777777777777766667777777777
Q ss_pred EcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCc--EEEcCCCc
Q psy8029 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ--TFYANSNR 233 (693)
Q Consensus 156 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~L~l~~n~ 233 (693)
++++|.++++.+..|.++++|++|++++|+++++....+..+++|++|++++|.++.+++..|..+++|+ .|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 7777777777666677777777777777777776544455577777777777777777666677777777 77777777
Q ss_pred cccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCcc--EEEcCC---CCCcccCcccccCCC--CccEEEecCC
Q psy8029 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN--TVILGE---SSIAELPSDLFWNST--NITNIVLTGH 306 (693)
Q Consensus 234 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~--~L~l~~---n~l~~~~~~~~~~~~--~L~~L~l~~n 306 (693)
++.+++..|.. ..|+++++++|. .++. .+..+..+. .+.+.. .....++...|.++. +++.+++++|
T Consensus 191 l~~~~~~~~~~-~~L~~L~l~~~~----~~~~-~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 191 IAGIEPGAFDS-AVFQSLNFGGTQ----NLLV-IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp CCEECTTTTTT-CEEEEEECTTCS----CHHH-HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred cCccChhHhhh-ccccccccCCch----hHHH-HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 77776665543 567777777665 1111 122233222 222221 112234455555544 7888999988
Q ss_pred CCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccc-ccc
Q psy8029 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLE-QIN 383 (693)
Q Consensus 307 ~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~-~~~ 383 (693)
.++.++...|..+++|++|++++|.++.+|.. +..+++|++|++++|+++.++.. ..+++|++|++++|.+. .+.
T Consensus 265 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 265 -YFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp -CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred -ccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 88888888888889999999999988888875 57888999999999998886443 77889999999999887 455
Q ss_pred ccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCC-cc
Q psy8029 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPD-QL 462 (693)
Q Consensus 384 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~ 462 (693)
+..+..+++|++|++++|.++.... .+..+..+++|++|++++|.++++.+..+..+++|+.|++++|++++..+ ..
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred hhhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 5568888999999999998886521 15567888899999999999988888888889999999999999887654 34
Q ss_pred cccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeee
Q psy8029 463 DSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQML 542 (693)
Q Consensus 463 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~ 542 (693)
+..+++|+.|++++|+++...+..+..+ ++++.+++++|++.-. . +.
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~L~~n~l~~~------------~----~~--- 467 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGL--------------PALQHLNLQGNHFPKG------------N----IQ--- 467 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTC--------------TTCCEEECTTCBCGGG------------E----EC---
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCC--------------CCCCEEECCCCCCCcc------------c----cc---
Confidence 7788889999999999887766666544 4588899999886310 0 00
Q ss_pred eeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccC-CCCCCCCccccCceEEEEEe
Q psy8029 543 ELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHM-PDYLPVTYEDKKATSIQLIL 621 (693)
Q Consensus 543 ~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~~~~l~~~~~~~l~~L~L 621 (693)
. .. .+..+..++.+++++|+++.+ |..+..+ ..++.|+|
T Consensus 468 ------------~--------~~---------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L 507 (606)
T 3t6q_A 468 ------------K--------TN---------------SLQTLGRLEILVLSFCDLSSIDQHAFTSL-----KMMNHVDL 507 (606)
T ss_dssp ------------S--------SC---------------GGGGCTTCCEEECTTSCCCEECTTTTTTC-----TTCCEEEC
T ss_pred ------------c--------ch---------------hhccCCCccEEECCCCccCccChhhhccc-----cCCCEEEC
Confidence 0 00 012244588899999999955 5666665 77889999
Q ss_pred cCCccccCCCCCCcccccCcEEEccCCccccccC----cCCCccEEEeeCCceeEecCCCcc
Q psy8029 622 HNNSINHFLESPPESYKLITDLDLSYNNISHVDT----MYPYLNHLELIDSEKIICHGSTKP 679 (693)
Q Consensus 622 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~L~~L~l~~N~l~~~~~~~~~ 679 (693)
++|++++.+|..+.+++.| .|++++|+++.+++ .+++|+.|++++|++ .|++....
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-~c~c~~~~ 567 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL-DCTCSNIY 567 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE-ECSGGGHH
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc-cccCCcHH
Confidence 9999999988889999999 99999999997765 457899999999995 56665433
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-51 Score=466.08 Aligned_cols=497 Identities=20% Similarity=0.246 Sum_probs=359.7
Q ss_pred EEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEE
Q psy8029 27 GVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHI 106 (693)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L 106 (693)
.++|... .+..+|....+++++|+++++.+....... ..+++.|+.|++++| .++.+++.+|+++++|++|
T Consensus 15 ~~~c~~~----~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n--~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 15 TYQCMDQ----KLSKVPDDIPSSTKNIDLSFNPLKILKSYS---FSNFSELQWLDLSRC--EIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp EEECTTS----CCSSCCTTSCTTCCEEECTTSCCCEECTTT---TTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEE
T ss_pred ceEccCC----CcccCCCCCCCCcCEEECCCCCcCEeChhh---ccCCccCcEEeCCCC--cccccCHHHhhchhhcCEe
Confidence 6778542 355677765679999999999987543222 346889999999999 9999988999999999999
Q ss_pred EccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccC-hhhhCCCCCCCEEEccCCC
Q psy8029 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQ 185 (693)
Q Consensus 107 ~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~ 185 (693)
++++| .++.+++..|+++++|++|++++|.++++++..|+++++|++|++++|.+.++. |..|+++++|++|++++|+
T Consensus 86 ~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 86 ILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp ECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 99999 999998888999999999999999999998778999999999999999998743 6779999999999999999
Q ss_pred CCCCChhhcCCCCCCc----EEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc-------------------------
Q psy8029 186 LINLTRAIFNNVPNLR----SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM------------------------- 236 (693)
Q Consensus 186 l~~~~~~~~~~l~~L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------- 236 (693)
++++.+..|+.+++|+ +|++++|.++.+++..+... +|+.|++++|.+..
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 9998877666665554 89999999988888776655 77888877775430
Q ss_pred ---------------------------------CChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCC
Q psy8029 237 ---------------------------------FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283 (693)
Q Consensus 237 ---------------------------------~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~ 283 (693)
..+. +..+++|+.++++++. +..++ .+..+++|++|++++|.
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~--~~~l~--~l~~~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVS--IKYLE--DVPKHFKWQSLSIIRCQ 318 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCC--CCCCC--CCCTTCCCSEEEEESCC
T ss_pred CCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCcc--chhhh--hccccccCCEEEccccc
Confidence 0011 3344555666666655 33444 25555666666666666
Q ss_pred CcccCcc-------------------cccCCCCccEEEecCCCCCCcCC--hhhhcCCCCCcEEEccCCCCCCCChhhhc
Q psy8029 284 IAELPSD-------------------LFWNSTNITNIVLTGHKKLTSLP--STLFRDCKKLVKLELQRNKLKYLPENLFE 342 (693)
Q Consensus 284 l~~~~~~-------------------~~~~~~~L~~L~l~~n~~l~~l~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 342 (693)
+..+|.- .+..+++|+.|++++| .+..++ +..+..+++|++|++++|.++.++ ..|.
T Consensus 319 l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~ 396 (606)
T 3vq2_A 319 LKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFM 396 (606)
T ss_dssp CSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCT
T ss_pred CcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccccch-hhcc
Confidence 5545411 2334455555555555 444432 233456666666666666666655 3456
Q ss_pred cCccCceEeccCCcCccccC---ccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCC
Q psy8029 343 SLKELYTLNLKNNQLENITS---LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV 419 (693)
Q Consensus 343 ~~~~L~~L~Ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~ 419 (693)
.+++|+.|++++|++.+++. ...+++|++|++++|.+.+..+..|.++++|++|++++|.+++.. .+..+..++
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~ 473 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTT 473 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCT
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCC
Confidence 67777777777777766543 266777777777777777777777777788888888888777521 256677888
Q ss_pred CCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCc
Q psy8029 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNED 499 (693)
Q Consensus 420 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~ 499 (693)
+|++|++++|.++++++.++..+++|+.|++++|+++++++..+..+++|+.|++++|+++.++.. +..++
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~-------- 544 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFP-------- 544 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSC--------
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-Hhhhc--------
Confidence 888888888888888888788888888888888888888777778888888888888888877655 44332
Q ss_pred cccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCC
Q psy8029 500 STMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRP 564 (693)
Q Consensus 500 ~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~ 564 (693)
++++.+++++|||.|+|+..||.+|++..... ......+.|..| +|..+.+++.
T Consensus 545 -----~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~------~~~~~~~~C~~p~~~~~~~l~~~~~ 601 (606)
T 3vq2_A 545 -----KSLAFFNLTNNSVACICEHQKFLQWVKEQKQF------LVNVEQMTCATPVEMNTSLVLDFNN 601 (606)
T ss_dssp -----TTCCEEECCSCCCCCSSTTHHHHTTTTTSSSS------BSSGGGCCCC---------------
T ss_pred -----ccCcEEEccCCCcccCCccHHHHHHHHcCccc------ccCCccceeCCChHhCCCEeeeccc
Confidence 34889999999999999999999998764211 123567888877 6666666654
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-51 Score=462.14 Aligned_cols=534 Identities=19% Similarity=0.209 Sum_probs=431.9
Q ss_pred cEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcE
Q psy8029 51 NAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLES 130 (693)
Q Consensus 51 ~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~ 130 (693)
+.++.++..+.... ... .+.+++|+++++ .++.+++..|+++++|++|++++| .++++++.+|.++++|++
T Consensus 14 ~~~~c~~~~l~~ip-----~~~-~~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 14 ITYQCMDQKLSKVP-----DDI-PSSTKNIDLSFN--PLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp TEEECTTSCCSSCC-----TTS-CTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCE
T ss_pred CceEccCCCcccCC-----CCC-CCCcCEEECCCC--CcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCE
Confidence 35566665554432 211 267999999999 999999889999999999999999 999999989999999999
Q ss_pred EEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCC-hhhcCCCCCCcEEECcCCC
Q psy8029 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNN 209 (693)
Q Consensus 131 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~ 209 (693)
|++++|.++++++..|+++++|++|++++|.+.++++..|+++++|++|++++|+++++. +..|+++++|++|++++|.
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 999999999987788999999999999999999998888999999999999999998643 6678999999999999999
Q ss_pred CCcCCCCcCCCCCCCc----EEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC-
Q psy8029 210 ISILPSGVFSDLRKLQ----TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI- 284 (693)
Q Consensus 210 i~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l- 284 (693)
++.+++..|+.+++|+ +|++++|.++.+++..|... +|++|++++|......++. .+..++.++.+.+..+.+
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT-CLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHH-HHHTTTTCEEEEEEEECCT
T ss_pred ceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHH-Hhccccccccccccccccc
Confidence 9999888787777665 89999999999998887665 8999999999854433443 478888888887754333
Q ss_pred -----cccCcccccCCC--CccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcC
Q psy8029 285 -----AELPSDLFWNST--NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 357 (693)
Q Consensus 285 -----~~~~~~~~~~~~--~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 357 (693)
..+....+.++. .++.+++..+..+....+. |..+++|++|++++|.+..++ .+..+++|+.|++++|++
T Consensus 243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL 319 (606)
T ss_dssp TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC
T ss_pred cCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC
Confidence 223444444433 4666777443355544444 788999999999999999888 478899999999999999
Q ss_pred ccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChh
Q psy8029 358 ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD 437 (693)
Q Consensus 358 ~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 437 (693)
..+|.. .+++|++|++++|...+.. .+..+++|++|++++|.+++... .+..+..+++|++|++++|.+++++ .
T Consensus 320 ~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~-~ 393 (606)
T 3vq2_A 320 KQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGC--CSYSDLGTNSLRHLDLSFNGAIIMS-A 393 (606)
T ss_dssp SSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEE--CCHHHHCCSCCCEEECCSCSEEEEC-C
T ss_pred cccccC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcc--hhhhhccCCcccEeECCCCccccch-h
Confidence 889977 8999999999999654433 67789999999999999886521 2456788999999999999999876 5
Q ss_pred HHhcCCCCcEEECCCCCCccCCC-cccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCc
Q psy8029 438 WISSMTSLKELDLRHNNFSFIPD-QLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNP 516 (693)
Q Consensus 438 ~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np 516 (693)
.+..+++|+.|++++|++++.++ ..+..+++|+.|++++|+++...+..+..+ ++++.+++++|.
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n~ 459 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL--------------TSLNTLKMAGNS 459 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCE
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC--------------CCCCEEECCCCc
Confidence 68899999999999999998877 678889999999999999998877766554 458899999998
Q ss_pred ccccCCcHHHHHHHhcccccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCC
Q psy8029 517 IACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSA 596 (693)
Q Consensus 517 ~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n 596 (693)
+... . + +. .+..+.+++.+++++|
T Consensus 460 l~~~-------------~---------------------------~-~~---------------~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 460 FKDN-------------T---------------------------L-SN---------------VFANTTNLTFLDLSKC 483 (606)
T ss_dssp EGGG-------------E---------------------------E-CS---------------CCTTCTTCCEEECTTS
T ss_pred CCCc-------------c---------------------------h-HH---------------hhccCCCCCEEECCCC
Confidence 5310 0 0 00 0122445899999999
Q ss_pred CcccC-CCCCCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccccccC---cC-CCccEEEeeCCcee
Q psy8029 597 SLTHM-PDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT---MY-PYLNHLELIDSEKI 671 (693)
Q Consensus 597 ~l~~i-p~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~-~~L~~L~l~~N~l~ 671 (693)
+++.+ |..+..+ ..+++|+|++|++++.+|..++++++|+.|+|++|+++.+|. .+ ++|++|++++|++
T Consensus 484 ~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~- 557 (606)
T 3vq2_A 484 QLEQISWGVFDTL-----HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV- 557 (606)
T ss_dssp CCCEECTTTTTTC-----TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC-
T ss_pred cCCccChhhhccc-----ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc-
Confidence 99955 5566666 778999999999999988889999999999999999999998 33 4799999999995
Q ss_pred EecCCCccc
Q psy8029 672 ICHGSTKPL 680 (693)
Q Consensus 672 ~~~~~~~~~ 680 (693)
.|++..+.+
T Consensus 558 ~c~c~~~~~ 566 (606)
T 3vq2_A 558 ACICEHQKF 566 (606)
T ss_dssp CCSSTTHHH
T ss_pred ccCCccHHH
Confidence 466665443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-49 Score=463.24 Aligned_cols=497 Identities=19% Similarity=0.255 Sum_probs=322.6
Q ss_pred EEEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccE
Q psy8029 26 VGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKH 105 (693)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~ 105 (693)
..++|... .+..+|. ..+++++|++++|.+....... ..++++|+.|++++| ..+..+++.+|+++++|++
T Consensus 7 ~~~dcs~~----~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~---~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 7 RIAFYRFC----NLTQVPQ-VLNTTERLLLSFNYIRTVTASS---FPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRI 77 (844)
T ss_dssp EEEEESCC----CSSCCCS-SCTTCCEEEEESCCCCEECSSS---CSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCE
T ss_pred eEEEccCC----CCCCCCC-CCCCcCEEECCCCcCCccChhH---CcccccCeEEeCCCC-CCccccCHHHhcCCCCCCE
Confidence 45677543 3566777 5679999999999987543222 346889999999998 3455787889999999999
Q ss_pred EEccCCcCcccccccccCCCCCCcEEEeeCCcccc--cCcccCCCCCCCcEEEcCCCCCCccCh-hhhCCCCCCCEEEcc
Q psy8029 106 ILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITE--LYSGVFQYVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRILNLD 182 (693)
Q Consensus 106 L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~ 182 (693)
|+|++| .++.+.+..|.++++|++|+|++|.+++ .....|.++++|++|++++|.+.++.+ ..|+++++|++|+++
T Consensus 78 L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 78 LDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp EECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred EECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 999999 9999988899999999999999999987 333458999999999999999988754 578999999999999
Q ss_pred CCCCCCCChhhcCCC--CCCcEEECcCCCCCcCCCCcCCCC---------------------------------------
Q psy8029 183 HNQLINLTRAIFNNV--PNLRSLDISGNNISILPSGVFSDL--------------------------------------- 221 (693)
Q Consensus 183 ~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l--------------------------------------- 221 (693)
+|.++++.+..+..+ ++|+.|++++|.+....+..+..+
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 999988766655544 555555555555544333223322
Q ss_pred -----------------------------CCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCC
Q psy8029 222 -----------------------------RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272 (693)
Q Consensus 222 -----------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~ 272 (693)
++|+.|++++|.+..+++..|..+++|+.|++++|. +..+++..|..++
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~ 314 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK--INKIADEAFYGLD 314 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC--CCEECTTTTTTCS
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc--CCCCChHHhcCCC
Confidence 344555555555444444444555555555555554 3344444455555
Q ss_pred CccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEec
Q psy8029 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL 352 (693)
Q Consensus 273 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 352 (693)
+|++|++++|.+..+.+..|.++++|+.|++++| .++.++...|..+++|++|++++|.++.++. +++|+.|++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l 388 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFL 388 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEE
T ss_pred CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCCCcccC-----CCCcchhcc
Confidence 5555555555555554444555555555555555 4555554445555555555555555444332 333333333
Q ss_pred cCCcCccccCc-----------------------cCCCCCCeEeCCCCcccccccc-ccCCCCCCcEEECCCCcCccccc
Q psy8029 353 KNNQLENITSL-----------------------VGLSGLNSLDLSWNQLEQINLI-AFDGLSSLNTVDLSHNLLTFDEY 408 (693)
Q Consensus 353 s~n~l~~l~~~-----------------------~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 408 (693)
++|+++.++.. ..+++|++|++++|.+++..+. .+..+++|+.|++++|.++....
T Consensus 389 ~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp ESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred CCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 33333333221 2445555555555555544322 23345555555555555543211
Q ss_pred -ccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccch
Q psy8029 409 -QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL 487 (693)
Q Consensus 409 -~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 487 (693)
...+..|.++++|++|+|++|.++++++..|.++++|+.|+|++|+|+++++..+. ++|+.|++++|+++++.+..+
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~ 546 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF 546 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC
T ss_pred cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh
Confidence 01124466777777777777777777777777777888888888887777776544 677778888887777666544
Q ss_pred hhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCC
Q psy8029 488 EIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRP 564 (693)
Q Consensus 488 ~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~ 564 (693)
.+++.+++++|||.|+|++.||.+|+...... + ......+.|..| +|..+.+++.
T Consensus 547 -----------------~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~-~----~~~~~~~~C~~p~~~~g~~l~~~~~ 604 (844)
T 3j0a_A 547 -----------------VSLSVLDITHNKFICECELSTFINWLNHTNVT-I----AGPPADIYCVYPDSFSGVSLFSLST 604 (844)
T ss_dssp -----------------SSCCEEEEEEECCCCSSSCCSHHHHHHHTTTT-T----CCCGGGCCCSSCSSSCSCCTTTCCC
T ss_pred -----------------CCcCEEEecCCCcccccccHHHHHHHHhcCcc-c----ccccccCccCCchhhCCCccccCcc
Confidence 24779999999999999999999998753211 1 123456789887 5666666554
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-48 Score=436.88 Aligned_cols=468 Identities=20% Similarity=0.284 Sum_probs=392.5
Q ss_pred EEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEE
Q psy8029 27 GVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHI 106 (693)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L 106 (693)
.++|.+. .+..+|..-.++++.|+++++.+...... ...+++.|+.|++++| .++.+++.+|+++++|++|
T Consensus 11 ~~~c~~~----~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n--~i~~i~~~~~~~l~~L~~L 81 (570)
T 2z63_A 11 TYQCMEL----NFYKIPDNLPFSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTL 81 (570)
T ss_dssp EEECCSS----CCSSCCSSSCSSCCEEECCSCCCCEECTT---TTTTCSSCCEEECTTC--CCCEECTTTTTTCTTCCEE
T ss_pred EEEeCCC----CccccCCCccccccEEEccCCccCccChh---HhhCCCCceEEECCCC--cCCccCcccccCchhCCEE
Confidence 5778652 34556664446899999999998754322 2346889999999999 9999998999999999999
Q ss_pred EccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccC-hhhhCCCCCCCEEEccCCC
Q psy8029 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQ 185 (693)
Q Consensus 107 ~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~ 185 (693)
++++| .++.+++.+|.++++|++|++++|.++.++...|+++++|++|++++|.+..+. |..|+++++|++|++++|+
T Consensus 82 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 82 ILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp ECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred eCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 99999 999999999999999999999999999998877999999999999999998753 6779999999999999999
Q ss_pred CCCCChhhcCCCCCC----cEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCc----------------------------
Q psy8029 186 LINLTRAIFNNVPNL----RSLDISGNNISILPSGVFSDLRKLQTFYANSNR---------------------------- 233 (693)
Q Consensus 186 l~~~~~~~~~~l~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~---------------------------- 233 (693)
++++.+..++.+++| ++|++++|.++.+++..|..+ +|+.|++++|.
T Consensus 161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred cceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 999988888888888 899999999999998888765 78888888762
Q ss_pred ------------------------------cccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCC
Q psy8029 234 ------------------------------FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283 (693)
Q Consensus 234 ------------------------------l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~ 283 (693)
+....+..|..+++|++|++++|. +..+|.. +..+ +|++|++++|.
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~~l~~~-~~~~-~L~~L~l~~n~ 315 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT--IERVKDF-SYNF-GWQHLELVNCK 315 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE--ECSCCBC-CSCC-CCSEEEEESCB
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc--chhhhhh-hccC-CccEEeeccCc
Confidence 122233446667888888888887 5567765 4556 88888888888
Q ss_pred CcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCC--hhhhccCccCceEeccCCcCcccc
Q psy8029 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP--ENLFESLKELYTLNLKNNQLENIT 361 (693)
Q Consensus 284 l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~Ls~n~l~~l~ 361 (693)
+..++. ..+++|+.|++++| .+...... ..+++|++|++++|.++.+. +..+..+++|++|++++|.++.++
T Consensus 316 ~~~l~~---~~l~~L~~L~l~~n-~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 316 FGQFPT---LKLKSLKRLTFTSN-KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp CSSCCB---CBCSSCCEEEEESC-BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred ccccCc---ccccccCEEeCcCC-cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence 887775 45678889999888 44333222 57889999999999988664 445788999999999999998876
Q ss_pred Cc-cCCCCCCeEeCCCCccccccc-cccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC-cCChhH
Q psy8029 362 SL-VGLSGLNSLDLSWNQLEQINL-IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS-SLFDDW 438 (693)
Q Consensus 362 ~~-~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~ 438 (693)
.. ..+++|++|++++|.+.+..+ ..|..+++|++|++++|.++.. .+..+..+++|++|++++|.++ +..|..
T Consensus 390 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc----chhhhhcCCcCcEEECcCCcCccccchhh
Confidence 64 788999999999999988765 5788899999999999998866 4677889999999999999997 456677
Q ss_pred HhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCccc
Q psy8029 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIA 518 (693)
Q Consensus 439 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~ 518 (693)
+..+++|+.|++++|+++++++..+..+++|+.|++++|+++++++..+..+ ++++.+++++|||.
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL--------------TSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--------------TTCCEEECCSSCBC
T ss_pred hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc--------------cCCcEEEecCCccc
Confidence 8899999999999999999988888899999999999999999877766554 45889999999999
Q ss_pred ccCCcHHHH-HHHhcc
Q psy8029 519 CNCSNYDLI-RFVSKK 533 (693)
Q Consensus 519 c~C~~~~~~-~~~~~~ 533 (693)
|+|+..|+. .|+...
T Consensus 532 ~~~~~~~~~~~wl~~~ 547 (570)
T 2z63_A 532 CSCPRIDYLSRWLNKN 547 (570)
T ss_dssp CCTTTTHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHhc
Confidence 999999988 998774
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-47 Score=446.47 Aligned_cols=530 Identities=21% Similarity=0.241 Sum_probs=383.8
Q ss_pred cEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcE
Q psy8029 51 NAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLES 130 (693)
Q Consensus 51 ~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~ 130 (693)
...+.++|.+.... . -.+.++.|++++| .++.+.+..|+++++|++|+|++|..+..+++.+|.++++|++
T Consensus 7 ~~~dcs~~~L~~vP-----~--lp~~l~~LdLs~N--~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 7 RIAFYRFCNLTQVP-----Q--VLNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77 (844)
T ss_dssp EEEEESCCCSSCCC-----S--SCTTCCEEEEESC--CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred eEEEccCCCCCCCC-----C--CCCCcCEEECCCC--cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence 34555556554432 2 2356888888888 8888877888888888888888884455677777888888888
Q ss_pred EEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccCh--hhhCCCCCCCEEEccCCCCCCCCh-hhcCCCCCCcEEECcC
Q psy8029 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP--EIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISG 207 (693)
Q Consensus 131 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~ 207 (693)
|+|++|.++.+.+..|.++++|++|+|++|.+.+..+ ..|.++++|++|++++|.++++.+ ..|+++++|++|++++
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 8888888888777778888888888888888876333 347788888888888888877654 4678888888888888
Q ss_pred CCCCcCCCCcCCCC--CCCcEEEcCCCccccCChhhhhcccC------ceEEEEecCCCcccccCccccC--CCCCccEE
Q psy8029 208 NNISILPSGVFSDL--RKLQTFYANSNRFQMFPKDLFAEMKY------LQVIKISYHKDSLKELPSGLFA--NLPLLNTV 277 (693)
Q Consensus 208 n~i~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~------L~~L~l~~n~~~~~~i~~~~~~--~l~~L~~L 277 (693)
|.++.+.+..+..+ ++|+.|++++|.+....+..+..+.+ |++|++++|.+.. .++..... ....++.+
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV-DITGNFSNAISKSQAFSL 236 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST-TTTSGGGGTSCSCCBSEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch-hHHHHHHhhcCcccccce
Confidence 88887777777666 78888888888877544433444443 8888888886433 33332222 22466777
Q ss_pred EcCC---------CCCcccCcccccCC--CCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCcc
Q psy8029 278 ILGE---------SSIAELPSDLFWNS--TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346 (693)
Q Consensus 278 ~l~~---------n~l~~~~~~~~~~~--~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 346 (693)
.++. +.+.......|.++ ++|+.|++++| .+..+++..|..+++|++|++++|.++.+++..|..+++
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 315 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC
Confidence 7653 23333444445543 67888888888 777777777788888888888888888777777888888
Q ss_pred CceEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEE
Q psy8029 347 LYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424 (693)
Q Consensus 347 L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L 424 (693)
|++|++++|+++.+... ..+++|++|++++|.+.++.+..|..+++|++|++++|.++.. ..+++|+.|
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i---------~~~~~L~~L 386 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI---------HFIPSIPDI 386 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC---------SSCCSCSEE
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc---------cCCCCcchh
Confidence 88888888888776433 7788888888888888888888888888888888888888743 126788888
Q ss_pred ECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcc-cccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccc
Q psy8029 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL-DSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMV 503 (693)
Q Consensus 425 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~ 503 (693)
++++|+++.++.. ..+++.|++++|++++++... +..+++|+.|++++|+++.+........
T Consensus 387 ~l~~N~l~~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~------------- 449 (844)
T 3j0a_A 387 FLSGNKLVTLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE------------- 449 (844)
T ss_dssp EEESCCCCCCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS-------------
T ss_pred ccCCCCccccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc-------------
Confidence 8888888866432 467888888888888765432 3467788888888888886543321100
Q ss_pred cccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeec
Q psy8029 504 ARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFS 583 (693)
Q Consensus 504 ~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~ 583 (693)
..+++.+++++|.+.-.. . .+ . |+. .+.
T Consensus 450 ~~~L~~L~Ls~N~l~~~~--------------~------------------~~-----~-----------~~~----~~~ 477 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAW--------------E------------------TE-----L-----------CWD----VFE 477 (844)
T ss_dssp CTTCCBCEEESCCCSSSC--------------C------------------SC-----C-----------CSS----CSS
T ss_pred CCccccccCCCCcccccc--------------c------------------cc-----c-----------chh----hhc
Confidence 145778888888753100 0 00 0 111 123
Q ss_pred CCCceEEEEcCCCCcccCCCC-CCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccccccC-cCCCcc
Q psy8029 584 PYYSIMSVNCSSASLTHMPDY-LPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT-MYPYLN 661 (693)
Q Consensus 584 ~~~~l~~l~ls~n~l~~ip~~-~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~L~ 661 (693)
.+..++.+++++|+++.+|+. +..+ ..++.|+|++|+|+++++..+. ++|+.|+|++|+|+.+++ .+.+|+
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHL-----TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSC-----CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred CcccccEEECCCCcccccChhHccch-----hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcC
Confidence 355689999999999977654 4555 7789999999999999998776 899999999999997766 667999
Q ss_pred EEEeeCCceeEecCCC
Q psy8029 662 HLELIDSEKIICHGST 677 (693)
Q Consensus 662 ~L~l~~N~l~~~~~~~ 677 (693)
.|++++|++ .|+++-
T Consensus 551 ~l~l~~Np~-~C~c~~ 565 (844)
T 3j0a_A 551 VLDITHNKF-ICECEL 565 (844)
T ss_dssp EEEEEEECC-CCSSSC
T ss_pred EEEecCCCc-cccccc
Confidence 999999994 466653
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-46 Score=428.35 Aligned_cols=504 Identities=20% Similarity=0.277 Sum_probs=365.5
Q ss_pred EEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEE
Q psy8029 27 GVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHI 106 (693)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L 106 (693)
.++|.+.. +..+|..--+.+++|+++++.+....-. .+.+++.|+.|++++| .|+.+++.+|+++++|++|
T Consensus 35 ~~~c~~~~----l~~vP~~lp~~~~~LdLs~N~i~~l~~~---~f~~l~~L~~L~Ls~N--~i~~i~~~~f~~L~~L~~L 105 (635)
T 4g8a_A 35 TYQCMELN----FYKIPDNLPFSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTL 105 (635)
T ss_dssp EEECTTSC----CSSCCSSSCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEE
T ss_pred EEECCCCC----cCccCCCCCcCCCEEEeeCCCCCCCCHH---HHhCCCCCCEEECCCC--cCCCcChhHhcCCCCCCEE
Confidence 57786533 4456654334789999999888654321 1346788999999998 8999988889999999999
Q ss_pred EccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccC-hhhhCCCCCCCEEEccCCC
Q psy8029 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQ 185 (693)
Q Consensus 107 ~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~ 185 (693)
+|++| +++.+++++|.++++|++|++++|+++++++..|+++++|++|++++|.++.+. +..+..+++|++|++++|+
T Consensus 106 ~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 106 ILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp ECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 99999 899999888999999999999999998888888899999999999999887653 5667888999999999999
Q ss_pred CCCCChhhcCCCCC----CcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccc-cCChh--------------------
Q psy8029 186 LINLTRAIFNNVPN----LRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ-MFPKD-------------------- 240 (693)
Q Consensus 186 l~~~~~~~~~~l~~----L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~-------------------- 240 (693)
++++.+..|..+.+ ...++++.|.++.+++..+.. ..++.+++.+|... .+...
T Consensus 185 l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 185 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 98887766655443 346788888887776655433 23344444443211 00000
Q ss_pred -------------------------------------hhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCC
Q psy8029 241 -------------------------------------LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283 (693)
Q Consensus 241 -------------------------------------~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~ 283 (693)
.+....+++.+.+..+. +..++. +.....++.|++.++.
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~--~~~~~~L~~L~l~~~~ 339 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT--IERVKD--FSYNFGWQHLELVNCK 339 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE--EEECGG--GGSCCCCSEEEEESCE
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc--cccccc--cccchhhhhhhccccc
Confidence 11222334444444443 222222 3445566777776666
Q ss_pred CcccCccc-------------------ccCCCCccEEEecCCCCCCcC--ChhhhcCCCCCcEEEccCCCCCCCChhhhc
Q psy8029 284 IAELPSDL-------------------FWNSTNITNIVLTGHKKLTSL--PSTLFRDCKKLVKLELQRNKLKYLPENLFE 342 (693)
Q Consensus 284 l~~~~~~~-------------------~~~~~~L~~L~l~~n~~l~~l--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 342 (693)
+..++... +..+++|+.+++++| .+... ....+..+.+|+.+++..+....++.. |.
T Consensus 340 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~ 417 (635)
T 4g8a_A 340 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FL 417 (635)
T ss_dssp ESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CT
T ss_pred ccCcCcccchhhhhcccccccCCCCcccccccccccchhhcc-ccccccccccchhhhhhhhhhhcccccccccccc-cc
Confidence 55544321 123455555555555 33211 111223455566666666555444332 45
Q ss_pred cCccCceEeccCCcCccccCc---cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCC
Q psy8029 343 SLKELYTLNLKNNQLENITSL---VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV 419 (693)
Q Consensus 343 ~~~~L~~L~Ls~n~l~~l~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~ 419 (693)
.+++|+.++++.+........ ..+++++.+++++|.+.+..+..+..++.|+.|++++|.+.... .+..|..++
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~---~~~~~~~l~ 494 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELR 494 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCT
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc---Cchhhhhcc
Confidence 677788888877776654332 67889999999999999999999999999999999999755322 367889999
Q ss_pred CCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCc
Q psy8029 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNED 499 (693)
Q Consensus 420 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~ 499 (693)
+|++|+|++|++++++|..|.++++|++|+|++|+|+++++..+..+++|+.|||++|+|+++++..+..++
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-------- 566 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-------- 566 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC--------
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh--------
Confidence 999999999999999999999999999999999999999999999999999999999999999888877653
Q ss_pred cccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccCC
Q psy8029 500 STMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDTK 572 (693)
Q Consensus 500 ~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~~ 572 (693)
.+++.+++++|||.|||++.||.+|++..... ..+...++|..| +|..+.+++ ++|.+.
T Consensus 567 -----~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~------~~~~~~~~C~~P~~~~g~~l~~~~---~~C~~~ 628 (635)
T 4g8a_A 567 -----SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL------LVEVERMECATPSDKQGMPVLSLN---ITCQMT 628 (635)
T ss_dssp -----TTCCEEECTTCCBCCSGGGHHHHHHHHHTTTT------BSCGGGCBBCSSTTTTTCBGGGCC---CCC---
T ss_pred -----CcCCEEEeeCCCCcccCCcHHHHHHHHhCCCc------cCCCCCceeCCchHHCCCEeeeec---cCCCCC
Confidence 35889999999999999999999999875321 123457899999 888888884 466653
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.2e-47 Score=422.10 Aligned_cols=473 Identities=20% Similarity=0.267 Sum_probs=366.7
Q ss_pred CccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccc
Q psy8029 38 IYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGL 117 (693)
Q Consensus 38 ~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~ 117 (693)
.+..+|..-.+++++|++++|.+....... ..++++|++|++++| .++.+++.+|+++++|++|++++| .++++
T Consensus 16 ~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 89 (549)
T 2z81_A 16 SFTSIPSGLTAAMKSLDLSFNKITYIGHGD---LRACANLQVLILKSS--RINTIEGDAFYSLGSLEHLDLSDN-HLSSL 89 (549)
T ss_dssp CCSSCCSCCCTTCCEEECCSSCCCEECSST---TSSCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTS-CCCSC
T ss_pred ccccccccCCCCccEEECcCCccCccChhh---hhcCCcccEEECCCC--CcCccChhhccccccCCEEECCCC-ccCcc
Confidence 566788766678999999999886543222 346788999999998 999888888999999999999999 99999
Q ss_pred cccccCCCCCCcEEEeeCCcccccC-cccCCCCCCCcEEEcCCCC-CCccChhhhCCCCCCCEEEccCCCCCCCChhhcC
Q psy8029 118 HKDIFKGTPQLESLNLRGNSITELY-SGVFQYVPKLQVLDLGSND-VAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFN 195 (693)
Q Consensus 118 ~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 195 (693)
++..|+++++|++|++++|.++.++ +..|+++++|++|++++|. +..+++..|.++++|++|++++|++++..+..++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 9888999999999999999998643 3458899999999999997 6777777889999999999999999988888889
Q ss_pred CCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCC---hhhhhcccCceEEEEecCCCccc---ccCccccC
Q psy8029 196 NVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP---KDLFAEMKYLQVIKISYHKDSLK---ELPSGLFA 269 (693)
Q Consensus 196 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~l~~n~~~~~---~i~~~~~~ 269 (693)
.+++|++|++++|.+..++...+..+++|++|++++|.++.++ ......+++|+.|++++|.+... .++. .+.
T Consensus 170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~~~ 248 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK-LLR 248 (549)
T ss_dssp TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG-GGG
T ss_pred ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH-Hhh
Confidence 9999999999999888776655567899999999999988652 23344578899999998864321 1111 123
Q ss_pred CCCCccEEEcCCCCCcccCc-----------------------------------ccccCCCCccEEEecCCCCCCcCCh
Q psy8029 270 NLPLLNTVILGESSIAELPS-----------------------------------DLFWNSTNITNIVLTGHKKLTSLPS 314 (693)
Q Consensus 270 ~l~~L~~L~l~~n~l~~~~~-----------------------------------~~~~~~~~L~~L~l~~n~~l~~l~~ 314 (693)
.+++|+.+++++|.+.+++. ..+....+|+.+++++| .++.+|.
T Consensus 249 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~ 327 (549)
T 2z81_A 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPC 327 (549)
T ss_dssp GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCH
T ss_pred hhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccCCH
Confidence 44555666655554433210 11223457888888888 7888888
Q ss_pred hhhcCCCCCcEEEccCCCCCCCC---hhhhccCccCceEeccCCcCccccC----ccCCCCCCeEeCCCCcccccccccc
Q psy8029 315 TLFRDCKKLVKLELQRNKLKYLP---ENLFESLKELYTLNLKNNQLENITS----LVGLSGLNSLDLSWNQLEQINLIAF 387 (693)
Q Consensus 315 ~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~Ls~n~l~~l~~----~~~l~~L~~L~Ls~n~l~~~~~~~~ 387 (693)
.+|..+++|++|++++|.++... ...+..+++|+.|++++|++++++. ...+++|++|++++|.+++++ ..+
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~ 406 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSC 406 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC-SCC
T ss_pred HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC-hhh
Confidence 87777888999999999887532 1225678889999999998888753 377888999999999888654 467
Q ss_pred CCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCC
Q psy8029 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS 467 (693)
Q Consensus 388 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 467 (693)
..+++|++|++++|.++... ..+ .++|++|++++|++++++ ..+++|++|++++|+|+.++.. ..++
T Consensus 407 ~~~~~L~~L~Ls~N~l~~l~-----~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~~--~~l~ 473 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGIRVVK-----TCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDA--SLFP 473 (549)
T ss_dssp CCCTTCCEEECTTSCCSCCC-----TTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCCG--GGCT
T ss_pred cccccccEEECCCCCccccc-----chh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcCCCc--ccCc
Confidence 77888999999999887542 111 268999999999998864 4789999999999999988763 5789
Q ss_pred CccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCc-HHHHHHHhcccccceeeeeeecc
Q psy8029 468 NKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSN-YDLIRFVSKKMTKTVYQMLELVT 546 (693)
Q Consensus 468 ~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~-~~~~~~~~~~~~~~~~~~~~~~~ 546 (693)
+|+.|++++|+++++++..+..+ .+++.+++++|||.|+|+. .|+.+|+...... ..
T Consensus 474 ~L~~L~Ls~N~l~~~~~~~~~~l--------------~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~--------~~ 531 (549)
T 2z81_A 474 VLLVMKISRNQLKSVPDGIFDRL--------------TSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--------EQ 531 (549)
T ss_dssp TCCEEECCSSCCCCCCTTGGGGC--------------TTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTT--------EE
T ss_pred cCCEEecCCCccCCcCHHHHhcC--------------cccCEEEecCCCccCCCccHHHHHHHHHhcccc--------cC
Confidence 99999999999999888777665 4588999999999999994 5777898764322 22
Q ss_pred CceeecCC
Q psy8029 547 DNLECFGN 554 (693)
Q Consensus 547 ~~~~c~~~ 554 (693)
..+.|..|
T Consensus 532 ~~~~C~~~ 539 (549)
T 2z81_A 532 GSAKCSGS 539 (549)
T ss_dssp SCCBBTTT
T ss_pred CCCeECCC
Confidence 45677665
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-47 Score=425.55 Aligned_cols=493 Identities=18% Similarity=0.220 Sum_probs=324.2
Q ss_pred ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029 75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154 (693)
Q Consensus 75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 154 (693)
+.++.|+++++ .++.+++.+|.++++|++|++++| .++++++++|+++++|++|++++|.++.+++..|+++++|++
T Consensus 28 ~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSC--CCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCC--ccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 45788888888 888888778888888888888888 888888888888888888888888888888777888888888
Q ss_pred EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCC-hhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCC----cEEEc
Q psy8029 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL----QTFYA 229 (693)
Q Consensus 155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l 229 (693)
|++++|.++.+++..|+++++|++|++++|.++++. +..|+++++|++|++++|.++.+++..++.+++| +.+++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 888888888877766888888888888888887643 5667888888888888888888777777777777 78888
Q ss_pred CCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCC------CCcccCcccccCCC--CccEE
Q psy8029 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES------SIAELPSDLFWNST--NITNI 301 (693)
Q Consensus 230 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~~~--~L~~L 301 (693)
++|.++.+++..|... +|++|++++|......++. .+..++.++...+... .+..++...|.++. .++.+
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~-~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT-CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHH-HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhh-hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 8888888777777655 7888888887543333332 2455666655544321 12233333333333 23455
Q ss_pred EecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCcccc
Q psy8029 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ 381 (693)
Q Consensus 302 ~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~ 381 (693)
++.++..+.......|..+++|++|++++|.++.+|... ..+ +|+.|++++|.+..+|. ..+++|++|++++|.+.+
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~-~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS-YNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCC-SCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhh-ccC-CccEEeeccCcccccCc-ccccccCEEeCcCCcccc
Confidence 555543333333344566677777777777776666543 444 77777777777766655 456667777777776665
Q ss_pred ccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCC-
Q psy8029 382 INLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPD- 460 (693)
Q Consensus 382 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~- 460 (693)
..+. ..+++|++|++++|.++.... .+..+..+++|++|++++|.++++++. +..+++|+.|++++|++++.++
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred cccc--ccCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch
Confidence 4443 456677777777776664310 123455666777777777777666555 6667777777777777766544
Q ss_pred cccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceee
Q psy8029 461 QLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQ 540 (693)
Q Consensus 461 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~ 540 (693)
..+..+++|+.|++++|+++...+..+..+ ++++.+++++|.+.- +.
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n~l~~------------~~------- 461 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGL--------------SSLEVLKMAGNSFQE------------NF------- 461 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCEEGG------------GE-------
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhcC--------------CcCcEEECcCCcCcc------------cc-------
Confidence 345666667777777777666555444433 346666666665320 00
Q ss_pred eeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccC-CCCCCCCccccCceEEEE
Q psy8029 541 MLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHM-PDYLPVTYEDKKATSIQL 619 (693)
Q Consensus 541 ~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~~~~l~~~~~~~l~~L 619 (693)
++ . .+..+..++.+++++|+++.+ |..+..+ ..++.|
T Consensus 462 ---------------------~p-~---------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L 499 (570)
T 2z63_A 462 ---------------------LP-D---------------IFTELRNLTFLDLSQCQLEQLSPTAFNSL-----SSLQVL 499 (570)
T ss_dssp ---------------------EC-S---------------CCTTCTTCCEEECTTSCCCEECTTTTTTC-----TTCCEE
T ss_pred ---------------------ch-h---------------hhhcccCCCEEECCCCccccCChhhhhcc-----cCCCEE
Confidence 00 0 011123366667777766644 5455544 556667
Q ss_pred EecCCccccCCCCCCcccccCcEEEccCCccc-cccC
Q psy8029 620 ILHNNSINHFLESPPESYKLITDLDLSYNNIS-HVDT 655 (693)
Q Consensus 620 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~ 655 (693)
++++|+++++++..++++++|+.|++++|+++ .+|.
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 77777777766666666677777777777766 4443
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.4e-46 Score=414.39 Aligned_cols=481 Identities=18% Similarity=0.228 Sum_probs=387.2
Q ss_pred EEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcC
Q psy8029 79 TLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG 158 (693)
Q Consensus 79 ~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 158 (693)
..+.+++ .++.++...+ ++|++|++++| .++++++..|.++++|++|++++|+++++++.+|.++++|++|+++
T Consensus 9 ~c~~~~~--~l~~ip~~~~---~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 9 VCDGRSR--SFTSIPSGLT---AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp EEECTTS--CCSSCCSCCC---TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred eEECCCC--ccccccccCC---CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 3466666 8888885433 78999999999 8999888889999999999999999999888889999999999999
Q ss_pred CCCCCccChhhhCCCCCCCEEEccCCCCCCCC-hhhcCCCCCCcEEECcCCC-CCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029 159 SNDVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNN-ISILPSGVFSDLRKLQTFYANSNRFQM 236 (693)
Q Consensus 159 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~ 236 (693)
+|.++++++..|+++++|++|++++|+++++. +..|+++++|++|++++|. +..+++..|.++++|++|++++|.++.
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 99999999988999999999999999998653 3568899999999999998 677777778999999999999999988
Q ss_pred CChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCccc---CcccccCCCCccEEEecCCCCCCcCC
Q psy8029 237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL---PSDLFWNSTNITNIVLTGHKKLTSLP 313 (693)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~~l~~l~ 313 (693)
..+..+..+++|++|+++.|. ...++...+..+++|++|++++|.+.++ +......+++|+.|++++| .++...
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~ 239 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSE--SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDES 239 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSB--STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHH
T ss_pred cChhhhhccccCceEecccCc--ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc-ccchhH
Confidence 777778889999999999988 5567776667789999999999998875 3334456788999999988 554321
Q ss_pred h----hhhcCCCCCcEEEccCCCCCCCCh------hhhccCccCceEeccCCcCccccCc-------cCCCCCCeEeCCC
Q psy8029 314 S----TLFRDCKKLVKLELQRNKLKYLPE------NLFESLKELYTLNLKNNQLENITSL-------VGLSGLNSLDLSW 376 (693)
Q Consensus 314 ~----~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~~~~L~~L~Ls~n~l~~l~~~-------~~l~~L~~L~Ls~ 376 (693)
. ..+..+++|+.+++++|.+..++. ..+..+.+++.|++.++.+...... ...++|++|++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 1 123567899999999997654321 2245678899999999887664322 3356899999999
Q ss_pred CccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCCh--hHHhcCCCCcEEECCCCC
Q psy8029 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD--DWISSMTSLKELDLRHNN 454 (693)
Q Consensus 377 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~N~ 454 (693)
|.+..++...+..+++|++|++++|.+++..+. ....+..+++|++|++++|+++++++ ..+..+++|++|++++|+
T Consensus 320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK-NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH-HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred CccccCCHHHHhcCccccEEEccCCcccccccc-chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 999988776667899999999999999864210 02346788999999999999998864 568899999999999999
Q ss_pred CccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhccc
Q psy8029 455 FSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKM 534 (693)
Q Consensus 455 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~ 534 (693)
+++++.. +..+++|+.|++++|+++.++.... ++++.+++++|.+.-
T Consensus 399 l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~~-----------------~~L~~L~Ls~N~l~~--------------- 445 (549)
T 2z81_A 399 FHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIP-----------------QTLEVLDVSNNNLDS--------------- 445 (549)
T ss_dssp CCCCCSC-CCCCTTCCEEECTTSCCSCCCTTSC-----------------TTCSEEECCSSCCSC---------------
T ss_pred CccCChh-hcccccccEEECCCCCcccccchhc-----------------CCceEEECCCCChhh---------------
Confidence 9988764 6778999999999999987643221 358899999997531
Q ss_pred ccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccCCCCCCCCccccCc
Q psy8029 535 TKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKA 614 (693)
Q Consensus 535 ~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~ip~~~~~l~~~~~~ 614 (693)
+. ..+..++.+++++|+++.||+. ..+ .
T Consensus 446 ---------------------------~~-------------------~~l~~L~~L~Ls~N~l~~ip~~-~~l-----~ 473 (549)
T 2z81_A 446 ---------------------------FS-------------------LFLPRLQELYISRNKLKTLPDA-SLF-----P 473 (549)
T ss_dssp ---------------------------CC-------------------CCCTTCCEEECCSSCCSSCCCG-GGC-----T
T ss_pred ---------------------------hc-------------------ccCChhcEEECCCCccCcCCCc-ccC-----c
Confidence 00 0123478999999999999873 233 6
Q ss_pred eEEEEEecCCccccCCCCCCcccccCcEEEccCCccc-ccc
Q psy8029 615 TSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS-HVD 654 (693)
Q Consensus 615 ~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~ 654 (693)
.++.|+|++|++++++|..++++++|+.|++++|+++ ..|
T Consensus 474 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 7889999999999999988999999999999999998 666
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.7e-45 Score=406.41 Aligned_cols=467 Identities=16% Similarity=0.195 Sum_probs=346.4
Q ss_pred CCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCccccccc
Q psy8029 41 RLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKD 120 (693)
Q Consensus 41 ~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~ 120 (693)
.+|..-.+++++|++++|.+.......+ .+++.|++|++++| .++.+.+..|+++++|++|++++| .++.++..
T Consensus 14 ~ip~~~~~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~ 87 (520)
T 2z7x_B 14 HVPKDLSQKTTILNISQNYISELWTSDI---LSLSKLRILIISHN--RIQYLDISVFKFNQELEYLDLSHN-KLVKISCH 87 (520)
T ss_dssp SCCCSCCTTCSEEECCSSCCCCCCHHHH---TTCTTCCEEECCSS--CCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC
T ss_pred cccccccccccEEECCCCcccccChhhc---cccccccEEecCCC--ccCCcChHHhhcccCCCEEecCCC-ceeecCcc
Confidence 4554434677777777777765433322 35667777777777 777776677777777777777777 77777654
Q ss_pred ccCCCCCCcEEEeeCCcccccC-cccCCCCCCCcEEEcCCCCCCccChhhhCCCCCC--CEEEccCCCC--CCCChhhcC
Q psy8029 121 IFKGTPQLESLNLRGNSITELY-SGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL--RILNLDHNQL--INLTRAIFN 195 (693)
Q Consensus 121 ~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~ 195 (693)
.+++|++|++++|.+++++ +..|+++++|++|++++|.+.+ ..+..+++| ++|++++|++ .+..+..+.
T Consensus 88 ---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 88 ---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp ---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred ---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccc
Confidence 6777777777777777643 3456777777777777777665 235556666 7777777777 555555555
Q ss_pred CCC-CCcEEECcCCCCCc-CCCCcCCCCCCCcEEEcCCCc-------cccCChhhhhcccCceEEEEecCCCcccc---c
Q psy8029 196 NVP-NLRSLDISGNNISI-LPSGVFSDLRKLQTFYANSNR-------FQMFPKDLFAEMKYLQVIKISYHKDSLKE---L 263 (693)
Q Consensus 196 ~l~-~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~~~L~~L~l~~n~~~~~~---i 263 (693)
.+. ....+++++|.+.+ ++...+..+++|+.+++++|. +.+..+ .+..+++|+.|++++|.+.... +
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHH
Confidence 544 23355666666553 445556778888888888876 333323 4678889999999887643211 1
Q ss_pred CccccCCCCCccEEEcCCCCCc-ccCcccc----cCCCCccEEEecCCCCCCcCChhhhcCC---CCCcEEEccCCCCCC
Q psy8029 264 PSGLFANLPLLNTVILGESSIA-ELPSDLF----WNSTNITNIVLTGHKKLTSLPSTLFRDC---KKLVKLELQRNKLKY 335 (693)
Q Consensus 264 ~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~----~~~~~L~~L~l~~n~~l~~l~~~~~~~~---~~L~~L~l~~n~l~~ 335 (693)
.... ..++|++|++++|.+. .+|..+| ..+++|+.+++++| .+ .+|...+..+ .+|++|++++|.+..
T Consensus 241 ~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n-~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 241 LQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHH--HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC-CC-CSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHh--hhCcccEEEeecccccCccccchhhcccccCceeEecccccc-ce-ecchhhhhcccccCceeEEEcCCCcccc
Confidence 1111 2458999999999988 5665554 78899999999999 66 7774333333 679999999999877
Q ss_pred CChhhhccCccCceEeccCCcCcc-ccCc-cCCCCCCeEeCCCCcccccc--ccccCCCCCCcEEECCCCcCcccccccC
Q psy8029 336 LPENLFESLKELYTLNLKNNQLEN-ITSL-VGLSGLNSLDLSWNQLEQIN--LIAFDGLSSLNTVDLSHNLLTFDEYQYG 411 (693)
Q Consensus 336 ~~~~~~~~~~~L~~L~Ls~n~l~~-l~~~-~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 411 (693)
++. +..+++|++|++++|++++ ++.. ..+++|++|++++|.++++. +..+..+++|++|++++|.++... .
T Consensus 317 ~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l---~ 391 (520)
T 2z7x_B 317 MLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE---K 391 (520)
T ss_dssp CCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG---G
T ss_pred ccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc---c
Confidence 653 3678999999999999998 4443 88999999999999999854 467899999999999999999621 2
Q ss_pred CCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhc
Q psy8029 412 YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKA 491 (693)
Q Consensus 412 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 491 (693)
...+..+++|++|++++|.+++..+..+. ++|+.|++++|+|+.++...+ .+++|+.|++++|+|+.++...+..+
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l- 467 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRL- 467 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTC-
T ss_pred cchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccC-
Confidence 34578889999999999999887665443 799999999999998887654 89999999999999998877655444
Q ss_pred ccCCCCCccccccccCcEEEcCCCcccccCCcHHH-HHHHhcccccceeeeeeeccCceeecCC
Q psy8029 492 AAQDPNEDSTMVARSANIVILNDNPIACNCSNYDL-IRFVSKKMTKTVYQMLELVTDNLECFGN 554 (693)
Q Consensus 492 ~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 554 (693)
++++.+++++|||.|+|++.|| ..|+.+.... ....+.|..|
T Consensus 468 -------------~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~--------~~~~~~C~~p 510 (520)
T 2z7x_B 468 -------------TSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--------EQGSAKCSGS 510 (520)
T ss_dssp -------------TTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTT--------EESCCBBTTT
T ss_pred -------------CcccEEECcCCCCcccCCchHHHHHHHHhcccc--------CCCCCCcCCc
Confidence 4588999999999999999999 8998775321 2356788776
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3e-43 Score=400.06 Aligned_cols=517 Identities=20% Similarity=0.236 Sum_probs=396.0
Q ss_pred ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029 75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154 (693)
Q Consensus 75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 154 (693)
+.+++|+|++| .|+.+++.+|+++++|++|+|++| +|+.+++++|.++++|++|+|++|+++.+++++|.++++|++
T Consensus 52 ~~~~~LdLs~N--~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCC--CCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 36899999998 999999889999999999999999 999999999999999999999999999999888999999999
Q ss_pred EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCC-hhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCC----cEEEc
Q psy8029 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL----QTFYA 229 (693)
Q Consensus 155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l 229 (693)
|++++|.++++++..|+++++|++|++++|+++.+. +..++.+++|++|++++|+++++.+..|..++++ ..+++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 999999999998888999999999999999988654 4667888999999999999998887776655443 46888
Q ss_pred CCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCC------CCcccCcccccCCCCccEEEe
Q psy8029 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES------SIAELPSDLFWNSTNITNIVL 303 (693)
Q Consensus 230 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~~~~L~~L~l 303 (693)
+.|.+..+++..+.. ..++.+++.+|.... .+....+..+..++...+..+ .+.......+.....+....+
T Consensus 209 s~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~-~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKE-IRLHKLTLRNNFDSL-NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp TTCCCCEECTTTTTT-CEEEEEEEESCCSSH-HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred ccCcccccCcccccc-hhhhhhhhhcccccc-cccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 999988888776543 457788888876433 333444667777766655332 223333344445555666555
Q ss_pred cCCCCCCcC---ChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccc
Q psy8029 304 TGHKKLTSL---PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380 (693)
Q Consensus 304 ~~n~~l~~l---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~ 380 (693)
..+ ..... ....|..+.+++.+++.++.+..+.. +.....++.|++.+|.+..++. ..+..|+.+++++|.+.
T Consensus 287 ~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 287 RLA-YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEE-CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCC-CBCTTCCEEEEESCCSC
T ss_pred hhh-hhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCc-ccchhhhhcccccccCC
Confidence 543 22111 12234567789999999988777665 5567889999999998887665 35678889999988877
Q ss_pred cccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccC-C
Q psy8029 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFI-P 459 (693)
Q Consensus 381 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~ 459 (693)
... .+..+++|+.|++++|.+..... .+..+..+.+|++++++.+.+....+. +..+++|+.+++++|..... +
T Consensus 363 ~~~--~~~~l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 363 NAF--SEVDLPSLEFLDLSRNGLSFKGC--CSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp CBC--CCCBCTTCCEEECCSSCCBEEEE--CCHHHHSCSCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTS
T ss_pred CCc--ccccccccccchhhccccccccc--cccchhhhhhhhhhhcccccccccccc-ccccccccchhhhhcccccccc
Confidence 654 34568899999999998875432 234456678999999999988776554 67889999999998877654 4
Q ss_pred CcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhccccccee
Q psy8029 460 DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVY 539 (693)
Q Consensus 460 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~ 539 (693)
...+..++.++.+++++|+++...+..+... ..++.+++++|.+.- .
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~--------------~~L~~L~Ls~N~~~~-------------~------ 484 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--------------SSLEVLKMAGNSFQE-------------N------ 484 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCEEGG-------------G------
T ss_pred ccccccccccccccccccccccccccccccc--------------hhhhhhhhhhccccc-------------c------
Confidence 4557788889999999999998877666544 457899999987420 0
Q ss_pred eeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccC-CCCCCCCccccCceEEE
Q psy8029 540 QMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHM-PDYLPVTYEDKKATSIQ 618 (693)
Q Consensus 540 ~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~~~~l~~~~~~~l~~ 618 (693)
+.+. .+..+.+++++++++|+++.+ |..+..+ .+|++
T Consensus 485 ----------------------~~~~---------------~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l-----~~L~~ 522 (635)
T 4g8a_A 485 ----------------------FLPD---------------IFTELRNLTFLDLSQCQLEQLSPTAFNSL-----SSLQV 522 (635)
T ss_dssp ----------------------EECS---------------CCTTCTTCCEEECTTSCCCEECTTTTTTC-----TTCCE
T ss_pred ----------------------cCch---------------hhhhccccCEEECCCCccCCcChHHHcCC-----CCCCE
Confidence 0000 012244588999999999966 5556666 77899
Q ss_pred EEecCCccccCCCCCCcccccCcEEEccCCccccccC-----cCCCccEEEeeCCceeEecCCCcccc
Q psy8029 619 LILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT-----MYPYLNHLELIDSEKIICHGSTKPLN 681 (693)
Q Consensus 619 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~~L~~L~l~~N~l~~~~~~~~~~~ 681 (693)
|+|++|+|+++++..|+++++|+.|||++|+|+.+++ .+++|++|+|++|| +.|+|+-+.+.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np-~~C~C~~~~~~ 589 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND-FACTCEHQSFL 589 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC-BCCSGGGHHHH
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC-CcccCCcHHHH
Confidence 9999999999999999999999999999999997766 34789999999999 67888765543
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4e-43 Score=392.24 Aligned_cols=474 Identities=19% Similarity=0.198 Sum_probs=346.3
Q ss_pred CCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCC
Q psy8029 48 GPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQ 127 (693)
Q Consensus 48 ~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~ 127 (693)
...+.++++++.+.... ... .+.++.|++++| .++.+++..|+++++|++|++++| .++++++++|.++++
T Consensus 31 ~~~~~l~ls~~~L~~ip-----~~~-~~~L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVP-----KDL-PPRTKALSLSQN--SISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQD 101 (562)
T ss_dssp --CCEEECTTSCCCSCC-----TTS-CTTCCEEECCSS--CCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTT
T ss_pred CCCcEEEcCCCCCccCC-----CCC-CCCcCEEECCCC--CccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCC
Confidence 44578999999887532 111 267999999999 999998889999999999999999 999998888999999
Q ss_pred CcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccC-hhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECc
Q psy8029 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206 (693)
Q Consensus 128 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 206 (693)
|++|++++|+++.+|.. .+++|++|++++|.+++++ +..|+++++|++|++++|+++......+..+ +|++|+++
T Consensus 102 L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~ 177 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLD 177 (562)
T ss_dssp CCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEE
T ss_pred CCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEee
Confidence 99999999999988875 7899999999999999876 4778999999999999999887543333333 44999999
Q ss_pred CCCC--CcCCCCcCCCCC-CCcEEEcCCCcccc-CChhhhhcccCceEEEEecC--------------------------
Q psy8029 207 GNNI--SILPSGVFSDLR-KLQTFYANSNRFQM-FPKDLFAEMKYLQVIKISYH-------------------------- 256 (693)
Q Consensus 207 ~n~i--~~~~~~~~~~l~-~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n-------------------------- 256 (693)
+|.+ +...+..+..+. ..-.+++++|.+.. ++...+..+++|+.+++++|
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9988 666655555433 01133444444432 33333344455555555544
Q ss_pred --CCcc---cccCccccCCCCCccEEEcCCCCCc-ccCcccc----cCCCCccEEEecCCCCCCcCChhhhcC---CCCC
Q psy8029 257 --KDSL---KELPSGLFANLPLLNTVILGESSIA-ELPSDLF----WNSTNITNIVLTGHKKLTSLPSTLFRD---CKKL 323 (693)
Q Consensus 257 --~~~~---~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~----~~~~~L~~L~l~~n~~l~~l~~~~~~~---~~~L 323 (693)
.+.. ..+++. ...++|++|++++|.+. .+|...| ..++.|+.+++..+ .+ .+|...+.. ..+|
T Consensus 258 ~~~l~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~-~~-~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 258 HIETTWKCSVKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ-VF-LFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEECHHHHHHHHHH--HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC-CC-SSCHHHHHHHHHTCCC
T ss_pred CCcCcHHHHHHHHHh--hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc-ee-ecChhhhhhhhccCcc
Confidence 2111 011111 12347888888888877 4665543 55666666666666 44 566332222 2679
Q ss_pred cEEEccCCCCCCCChhhhccCccCceEeccCCcCcc-ccCc-cCCCCCCeEeCCCCcccccc--ccccCCCCCCcEEECC
Q psy8029 324 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN-ITSL-VGLSGLNSLDLSWNQLEQIN--LIAFDGLSSLNTVDLS 399 (693)
Q Consensus 324 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-l~~~-~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~ 399 (693)
++|++++|.+..++. +..+++|++|++++|++++ ++.. ..+++|++|++++|.++++. +..|..+++|++|+++
T Consensus 334 ~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 334 KMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp SEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred eEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 999999998876552 2678999999999999998 4443 88999999999999999865 4668999999999999
Q ss_pred CCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCC
Q psy8029 400 HNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479 (693)
Q Consensus 400 ~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 479 (693)
+|.++... ....+..+++|++|++++|.+++..+..+. ++|+.|++++|+|+.++...+ .+++|+.|++++|++
T Consensus 412 ~N~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 412 LNSLNSHA---YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQL 485 (562)
T ss_dssp TSCCBSCC---SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCC
T ss_pred CCcCCCcc---ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCC
Confidence 99998621 245688899999999999999876654332 799999999999999988765 899999999999999
Q ss_pred ceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHH-HHhcccccceee-eeeeccCceeecCCCCc
Q psy8029 480 AIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIR-FVSKKMTKTVYQ-MLELVTDNLECFGNAGV 557 (693)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~c~~~~~~ 557 (693)
+.++...+..+ ++++.+++++|||.|+|++.|+.+ |..... ..+.. .-......++|.. +|.
T Consensus 486 ~~l~~~~~~~l--------------~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~C~~-~g~ 549 (562)
T 3a79_B 486 KSVPDGVFDRL--------------TSLQYIWLHDNPWDCTCPGIRYLSEWINKHS-GVVRNSAGSVAPDSAKCSG-SGK 549 (562)
T ss_dssp CCCCTTSTTTC--------------TTCCCEECCSCCBCCCHHHHHHHHHHHHHTT-TTEECSSSSBCSSSSCBSS-SCC
T ss_pred CCCCHHHHhcC--------------CCCCEEEecCCCcCCCcchHHHHHHHHHhcC-CcccccccCCCCCCCccCC-CCc
Confidence 98877655544 458899999999999999999976 865532 11110 0002344567765 555
Q ss_pred ccccc
Q psy8029 558 GINSV 562 (693)
Q Consensus 558 ~~~~l 562 (693)
.+.++
T Consensus 550 ~l~~~ 554 (562)
T 3a79_B 550 PVRSI 554 (562)
T ss_dssp CTTTC
T ss_pred Eeeee
Confidence 55544
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-42 Score=392.26 Aligned_cols=434 Identities=18% Similarity=0.245 Sum_probs=349.5
Q ss_pred EeccCCe---EEEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCc
Q psy8029 19 EIDCSHF---VGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPP 95 (693)
Q Consensus 19 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~ 95 (693)
..+||.| .+|.|... ++|+.|+++++.+...--. ....++.|+.|++++| .++.-+ .
T Consensus 63 ~~~~c~w~~~~GV~C~~~--------------~~V~~L~L~~~~l~g~lp~---~l~~L~~L~~L~Ls~N--~~~~~~-~ 122 (636)
T 4eco_A 63 NKELDMWGAQPGVSLNSN--------------GRVTGLSLEGFGASGRVPD---AIGQLTELEVLALGSH--GEKVNE-R 122 (636)
T ss_dssp SSCGGGTTCCTTEEECTT--------------CCEEEEECTTSCCEEEECG---GGGGCTTCCEEESCCG--GGGGTC-C
T ss_pred CCCcccccCCCCeEEcCC--------------CCEEEEEecCcccCCcCCh---HHhcCccceEEECcCC--ccccCC-c
Confidence 3678888 88888431 5789999999988643222 2346889999999988 552110 0
Q ss_pred cCC-----------------------------------------------------CcccccEEEcc--CCcCccccccc
Q psy8029 96 YFD-----------------------------------------------------GLHFVKHILLS--HNKEITGLHKD 120 (693)
Q Consensus 96 ~~~-----------------------------------------------------~l~~L~~L~Ls--~n~~i~~~~~~ 120 (693)
.++ ....++.+.+. +| +++++|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n-~l~~ip~- 200 (636)
T 4eco_A 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN-NITFVSK- 200 (636)
T ss_dssp SBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSC-EEEEECG-
T ss_pred cccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccC-CCccCCH-
Confidence 011 01112222222 45 7878665
Q ss_pred ccCCCCCCcEEEeeCCcccc------------------cCcccCC--CCCCCcEEEcCCCCCCccChhhhCCCCCCCEEE
Q psy8029 121 IFKGTPQLESLNLRGNSITE------------------LYSGVFQ--YVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN 180 (693)
Q Consensus 121 ~~~~l~~L~~L~L~~n~i~~------------------~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 180 (693)
.|+++++|++|+|++|.+++ +|.. ++ ++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 58999999999999999998 7765 57 899999999999998888888899999999999
Q ss_pred ccCCC-CCC-CChhhcCCC------CCCcEEECcCCCCCcCCC-CcCCCCCCCcEEEcCCCccc-cCChhhhhcccCceE
Q psy8029 181 LDHNQ-LIN-LTRAIFNNV------PNLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQV 250 (693)
Q Consensus 181 L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~ 250 (693)
+++|+ +++ ..+..++.+ ++|++|++++|.++.++. ..+..+++|++|++++|.++ .++ .|..+++|++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCE
Confidence 99998 887 455555555 999999999999997765 26889999999999999999 777 6889999999
Q ss_pred EEEecCCCcccccCccccCCCCC-ccEEEcCCCCCcccCcccccCC--CCccEEEecCCCCCCcCChhhhc-------CC
Q psy8029 251 IKISYHKDSLKELPSGLFANLPL-LNTVILGESSIAELPSDLFWNS--TNITNIVLTGHKKLTSLPSTLFR-------DC 320 (693)
Q Consensus 251 L~l~~n~~~~~~i~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~~l~~l~~~~~~-------~~ 320 (693)
|++++|. +..+|.. +..+++ |++|++++|.++.+|.. +... ++|+.|++++| .+....+..|. .+
T Consensus 358 L~L~~N~--l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 358 LNLAYNQ--ITEIPAN-FCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EECCSSE--EEECCTT-SEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCC
T ss_pred EECCCCc--cccccHh-hhhhcccCcEEEccCCcCcccchh-hhhcccCccCEEECcCC-cCCCcchhhhcccccccccC
Confidence 9999998 5588876 788888 99999999999988853 4444 38999999999 76654444455 67
Q ss_pred CCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cC-------CCCCCeEeCCCCcccccccccc-CCC
Q psy8029 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VG-------LSGLNSLDLSWNQLEQINLIAF-DGL 390 (693)
Q Consensus 321 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~-------l~~L~~L~Ls~n~l~~~~~~~~-~~l 390 (693)
++|++|++++|.++.+|...|..+++|+.|++++|+++.+|.. .. +++|++|++++|.++.++...+ ..+
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l 512 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccC
Confidence 8999999999999999999888899999999999999988865 22 2399999999999997665443 389
Q ss_pred CCCcEEECCCCcCcccccccCCCCccCCCCCcEEEC------CCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccc
Q psy8029 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL------SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDS 464 (693)
Q Consensus 391 ~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 464 (693)
++|++|++++|.+++. +..+..+++|++|+| ++|++.+..|..+..+++|+.|+|++|+++.++...
T Consensus 513 ~~L~~L~Ls~N~l~~i-----p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~-- 585 (636)
T 4eco_A 513 PYLVGIDLSYNSFSKF-----PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-- 585 (636)
T ss_dssp TTCCEEECCSSCCSSC-----CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC--
T ss_pred CCcCEEECCCCCCCCc-----ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH--
Confidence 9999999999999964 667788999999999 567788888888999999999999999998887763
Q ss_pred cCCCccEEECCCCCCceeeccchhhh
Q psy8029 465 IVSNKLTLDLSFNQIAIVDLRTLEIK 490 (693)
Q Consensus 465 ~l~~L~~L~L~~N~l~~~~~~~~~~l 490 (693)
.++|+.|++++|++..++...+...
T Consensus 586 -~~~L~~L~Ls~N~l~~~~~~~~~~~ 610 (636)
T 4eco_A 586 -TPNISVLDIKDNPNISIDLSYVCPY 610 (636)
T ss_dssp -CTTCCEEECCSCTTCEEECTTTHHH
T ss_pred -hCcCCEEECcCCCCccccHHhcchh
Confidence 2799999999999999987666543
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-42 Score=384.17 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=49.3
Q ss_pred eEEEEcCCCCcccCCCCCCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccc
Q psy8029 588 IMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS 651 (693)
Q Consensus 588 l~~l~ls~n~l~~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 651 (693)
++.+++++|+++.+|..+..+ ..++.|+|++|+|+++++..+..+++|+.|++++|+++
T Consensus 423 L~~L~Ls~N~l~~ip~~~~~l-----~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 423 IKVLDLHSNKIKSIPKQVVKL-----EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCEEECCSSCCCCCCGGGGGC-----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCCcccccchhhhcC-----CCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 677888888888888766655 67888999999999887776888999999999999988
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-41 Score=389.50 Aligned_cols=439 Identities=18% Similarity=0.239 Sum_probs=346.8
Q ss_pred CCccEEEEEcCCCCCccHHHHhhhcCcccccEEEe-ecCCCCccCCCCc-------------------------------
Q psy8029 48 GPFNAVTFTFCPLPDENFISLFSKLNITTINTLAF-SNSPSNVGVLSPP------------------------------- 95 (693)
Q Consensus 48 ~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l-~~~~~~i~~l~~~------------------------------- 95 (693)
++|+.|+|+++.+...--.. ...++.|+.|+| +++ .+....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~---l~~L~~L~~LdLss~N--~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~ 397 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDA---IGQLTELKVLSFGTHS--ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397 (876)
T ss_dssp SCEEEEECTTTCCEEEECGG---GGGCTTCCEEESCCTT--HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred CCEEEEECccCCCCCcCchH---HhccccceEeeecccc--cccccccccccccccccchhHHHHHHHhhhhhhhccCcc
Confidence 68999999999886432222 346788999999 555 44321100
Q ss_pred --------------------cCCCcccccEEEccC--CcCcccccccccCCCCCCcEEEeeCCcccc-------------
Q psy8029 96 --------------------YFDGLHFVKHILLSH--NKEITGLHKDIFKGTPQLESLNLRGNSITE------------- 140 (693)
Q Consensus 96 --------------------~~~~l~~L~~L~Ls~--n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~------------- 140 (693)
.......++.+.+.. | +++++|. .|.++++|++|+|++|.+++
T Consensus 398 ~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n 475 (876)
T 4ecn_A 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475 (876)
T ss_dssp GGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred hhhhHHHHHHhhhCccccccccccccchhhceeccccC-cccchhH-HHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence 001122333333333 5 7777765 48899999999999999998
Q ss_pred -----cCccc-CCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCC-CCC-CChhh-------cCCCCCCcEEEC
Q psy8029 141 -----LYSGV-FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ-LIN-LTRAI-------FNNVPNLRSLDI 205 (693)
Q Consensus 141 -----~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~-------~~~l~~L~~L~L 205 (693)
+|... |.++++|++|+|++|.+.+..|..|.++++|++|++++|+ +++ ..+.. +..+++|++|++
T Consensus 476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred cccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence 77663 3399999999999999888778889999999999999998 886 33433 345569999999
Q ss_pred cCCCCCcCCC-CcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCC-ccEEEcCCCC
Q psy8029 206 SGNNISILPS-GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL-LNTVILGESS 283 (693)
Q Consensus 206 ~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~-L~~L~l~~n~ 283 (693)
++|.++.++. ..+.++++|+.|++++|.++.++ .|..+++|+.|++++|. +..+|.. +..+++ |+.|++++|.
T Consensus 556 s~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~--l~~lp~~-l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQ--IEEIPED-FCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSC--CSCCCTT-SCEECTTCCEEECCSSC
T ss_pred eCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCc--cccchHH-HhhccccCCEEECcCCC
Confidence 9999997775 36889999999999999999888 58899999999999999 4478876 778888 9999999999
Q ss_pred CcccCcccccCCC--CccEEEecCCCCCCcCChhh---hc--CCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCc
Q psy8029 284 IAELPSDLFWNST--NITNIVLTGHKKLTSLPSTL---FR--DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356 (693)
Q Consensus 284 l~~~~~~~~~~~~--~L~~L~l~~n~~l~~l~~~~---~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 356 (693)
+..+|. .+.... +|+.|++++| .+....+.+ +. .+++|++|++++|.++.+|...|..+++|+.|+|++|+
T Consensus 631 L~~lp~-~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 631 LKYIPN-IFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CCSCCS-CCCTTCSSCEEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCcCch-hhhccccCCCCEEECcCC-cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 998874 445544 4999999999 664432221 11 34589999999999999999988899999999999999
Q ss_pred CccccCc--c-------CCCCCCeEeCCCCccccccccccC--CCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEE
Q psy8029 357 LENITSL--V-------GLSGLNSLDLSWNQLEQINLIAFD--GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425 (693)
Q Consensus 357 l~~l~~~--~-------~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~ 425 (693)
++.+|.. . .+++|++|+|++|.++.++. .+. .+++|+.|+|++|.+++. +..+..+++|+.|+
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~-~l~~~~l~~L~~L~Ls~N~L~~l-----p~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD-DFRATTLPYLSNMDVSYNCFSSF-----PTQPLNSSQLKAFG 782 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG-GGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCTTCCEEE
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCccchH-HhhhccCCCcCEEEeCCCCCCcc-----chhhhcCCCCCEEE
Confidence 9988875 2 23389999999999997655 454 899999999999999964 66778999999999
Q ss_pred CCC------CCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCc
Q psy8029 426 LSY------NRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNED 499 (693)
Q Consensus 426 Ls~------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~ 499 (693)
|++ |.+.+..|..+..+++|+.|+|++|+|..+|... .++|+.|||++|++..+++..+.....
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l---~~~L~~LdLs~N~l~~i~~~~~~~~~~------- 852 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIE------- 852 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC---CSSSCEEECCSCTTCEEECGGGHHHHH-------
T ss_pred CCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh---cCCCCEEECCCCCCCccChHHcccccc-------
Confidence 976 7888888988999999999999999998887763 368999999999999999888766543
Q ss_pred cccccccCcEEEcCCCcccc--cCCc
Q psy8029 500 STMVARSANIVILNDNPIAC--NCSN 523 (693)
Q Consensus 500 ~~~~~~~l~~l~l~~Np~~c--~C~~ 523 (693)
...+.+.+|++.+ +|+.
T Consensus 853 -------~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 853 -------AGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp -------TTCCEEECCTTSEEESCGG
T ss_pred -------chheeecCCCccccCCCCC
Confidence 3356677777764 7754
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.6e-41 Score=363.50 Aligned_cols=398 Identities=20% Similarity=0.248 Sum_probs=291.4
Q ss_pred cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCccc-ccCcccCCCCCCCcEEE
Q psy8029 78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSIT-ELYSGVFQYVPKLQVLD 156 (693)
Q Consensus 78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~ 156 (693)
+.++.+++ .++.++. + .++|++|++++| .++++++..|.++++|++|++++|.+. .+++..|.++++|++|+
T Consensus 13 ~~~~c~~~--~l~~lp~--l--~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 13 YNAICINR--GLHQVPE--L--PAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp TEEECCSS--CCSSCCC--C--CTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred cccCcCCC--CcccCCC--C--CCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 35666666 7777774 2 278888999988 888887778888888999999888886 57777788888889999
Q ss_pred cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCCh--hhcCCCCCCcEEECcCCCCCcCCCCc-CCCCCCCcEEEcCCCc
Q psy8029 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR--AIFNNVPNLRSLDISGNNISILPSGV-FSDLRKLQTFYANSNR 233 (693)
Q Consensus 157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~ 233 (693)
+++|.++++.+..|.++++|++|++++|++++..+ ..|..+++|++|++++|.++.+.+.. +.++++|++|++++|.
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 98888888888888888888888888888876333 33788888888888888888876554 7778888888888888
Q ss_pred cccCChhhhhcc--cCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCc
Q psy8029 234 FQMFPKDLFAEM--KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS 311 (693)
Q Consensus 234 l~~~~~~~~~~~--~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~ 311 (693)
++.+.+..+..+ .+|+.+++++|. +..++...+.. .....+..+++|+.|++++| .++.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~--l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n-~l~~ 226 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSIT--LQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGN-GFKE 226 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCB--CTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTS-CCCH
T ss_pred ccccChhhhhccccccccccccccCc--ccccchhhccc----------------cccccccccceeeeEecCCC-cccc
Confidence 877666555444 456666666555 22333221110 00000112344555555554 3322
Q ss_pred CChhhhc---CCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc----cCCCCCCeEeCCCCccccccc
Q psy8029 312 LPSTLFR---DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL----VGLSGLNSLDLSWNQLEQINL 384 (693)
Q Consensus 312 l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~----~~l~~L~~L~Ls~n~l~~~~~ 384 (693)
..+..|. ..++|+.|++++|.+..... ..+.+...... ...++|++|++++|.+.++.+
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred cchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccch
Confidence 2111111 12556666666554432111 01111111110 234689999999999999999
Q ss_pred cccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccc
Q psy8029 385 IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDS 464 (693)
Q Consensus 385 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 464 (693)
..|..+++|++|++++|.++.. .+..+..+++|++|++++|.++++.+..+..+++|++|++++|+++++++..+.
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 368 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKI----DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred hhcccCCCCCEEECCCCccccc----ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence 8999999999999999999876 466788999999999999999999999999999999999999999999888899
Q ss_pred cCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHhcc
Q psy8029 465 IVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVSKK 533 (693)
Q Consensus 465 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~~~ 533 (693)
.+++|+.|++++|+++.++...+..+ ++++.+++++|||.|+|+ ..|+.+|+...
T Consensus 369 ~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~ 424 (455)
T 3v47_A 369 GLPNLKELALDTNQLKSVPDGIFDRL--------------TSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 424 (455)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTC--------------TTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred ccccccEEECCCCccccCCHhHhccC--------------CcccEEEccCCCcccCCCcchHHHHHHHhC
Confidence 99999999999999999887766554 458899999999999998 67888998765
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.1e-41 Score=385.25 Aligned_cols=378 Identities=18% Similarity=0.255 Sum_probs=317.5
Q ss_pred CccCCCCccCCCcccccEEEccCCcCccc------------------ccccc-cCCCCCCcEEEeeCCcccccCcccCCC
Q psy8029 88 NVGVLSPPYFDGLHFVKHILLSHNKEITG------------------LHKDI-FKGTPQLESLNLRGNSITELYSGVFQY 148 (693)
Q Consensus 88 ~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~------------------~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~ 148 (693)
.++.|+ ..|+++++|++|+|++| .+++ +|... |.++++|++|+|++|.+.+..+..|.+
T Consensus 436 ~L~~IP-~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 436 RITFIS-KAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp EEEEEC-GGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred cccchh-HHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 566676 67999999999999999 9998 66653 339999999999999987755566899
Q ss_pred CCCCcEEEcCCCC-CCc-cChhhhC-------CCCCCCEEEccCCCCCCCCh-hhcCCCCCCcEEECcCCCCCcCCCCcC
Q psy8029 149 VPKLQVLDLGSND-VAY-MDPEIFK-------NLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISILPSGVF 218 (693)
Q Consensus 149 l~~L~~L~Ls~n~-l~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~ 218 (693)
+++|++|++++|. +++ ..|..+. .+++|++|++++|+++.++. ..|+++++|++|++++|.++.++ .|
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~ 591 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AF 591 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hh
Confidence 9999999999998 886 4444344 45599999999999997765 36899999999999999999777 68
Q ss_pred CCCCCCcEEEcCCCccccCChhhhhcccC-ceEEEEecCCCcccccCccccCCCC--CccEEEcCCCCCcccCcccc---
Q psy8029 219 SDLRKLQTFYANSNRFQMFPKDLFAEMKY-LQVIKISYHKDSLKELPSGLFANLP--LLNTVILGESSIAELPSDLF--- 292 (693)
Q Consensus 219 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~i~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~--- 292 (693)
..+++|+.|++++|.++.++.. +..+++ |++|++++|. +..+|.. +...+ +|+.|++++|.+.+..+.+.
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~--L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHNK--LKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSSC--CCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred cCCCcceEEECcCCccccchHH-HhhccccCCEEECcCCC--CCcCchh-hhccccCCCCEEECcCCcCCCccccchhhh
Confidence 9999999999999999988766 778888 9999999999 5578754 55554 49999999999977543322
Q ss_pred --cCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccC-------ccCceEeccCCcCccccCc
Q psy8029 293 --WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL-------KELYTLNLKNNQLENITSL 363 (693)
Q Consensus 293 --~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-------~~L~~L~Ls~n~l~~l~~~ 363 (693)
....+|+.|++++| .+..+|..+|..+++|++|++++|.++.+|...|... ++|+.|+|++|+++.+|..
T Consensus 668 ~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~ 746 (876)
T 4ecn_A 668 DDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746 (876)
T ss_dssp TTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG
T ss_pred ccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH
Confidence 13458999999999 8999999998899999999999999999998776543 3999999999999998876
Q ss_pred -c--CCCCCCeEeCCCCccccccccccCCCCCCcEEECCC------CcCcccccccCCCCccCCCCCcEEECCCCCCCcC
Q psy8029 364 -V--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSH------NLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434 (693)
Q Consensus 364 -~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 434 (693)
. .+++|+.|+|++|.++++ +..+..+++|+.|+|++ |.+.+. .+..+..+++|+.|+|++|.+..+
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~----ip~~l~~L~~L~~L~Ls~N~L~~I 821 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQ----WPTGITTCPSLIQLQIGSNDIRKV 821 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCC----CCTTGGGCSSCCEEECCSSCCCBC
T ss_pred hhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCccccccccc----ChHHHhcCCCCCEEECCCCCCCcc
Confidence 4 899999999999999996 55788999999999987 556544 477889999999999999999766
Q ss_pred ChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCcee
Q psy8029 435 FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV 482 (693)
Q Consensus 435 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 482 (693)
+.. +. ++|+.|+|++|++..+....+.....+..+.|.+|++..+
T Consensus 822 p~~-l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I 866 (876)
T 4ecn_A 822 DEK-LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866 (876)
T ss_dssp CSC-CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred CHh-hc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence 554 33 7999999999999988877666555566777888877765
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-40 Score=374.88 Aligned_cols=412 Identities=20% Similarity=0.263 Sum_probs=336.2
Q ss_pred ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCccccc---------------------------------ccc
Q psy8029 75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLH---------------------------------KDI 121 (693)
Q Consensus 75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~---------------------------------~~~ 121 (693)
..|+.|+++++ .++...+..++++++|++|+|++| .+...+ +..
T Consensus 81 ~~V~~L~L~~~--~l~g~lp~~l~~L~~L~~L~Ls~N-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGF--GASGRVPDAIGQLTELEVLALGSH-GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTS--CCEEEECGGGGGCTTCCEEESCCG-GGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEEecCc--ccCCcCChHHhcCccceEEECcCC-ccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhh
Confidence 46899999998 888544479999999999999999 552111 000
Q ss_pred cC-------------------CCCCCcEEEe--eCCcccccCcccCCCCCCCcEEEcCCCCCCcc---------------
Q psy8029 122 FK-------------------GTPQLESLNL--RGNSITELYSGVFQYVPKLQVLDLGSNDVAYM--------------- 165 (693)
Q Consensus 122 ~~-------------------~l~~L~~L~L--~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------- 165 (693)
+. ....++.+.+ .+|+++++|.. |+++++|++|+|++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH-HhcccCCCEEECcCCccccccccccccccccchhc
Confidence 00 0111222222 25788887764 89999999999999999983
Q ss_pred --ChhhhC--CCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCC-CCc-CCCCcCCCC------CCCcEEEcCCCc
Q psy8029 166 --DPEIFK--NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN-ISI-LPSGVFSDL------RKLQTFYANSNR 233 (693)
Q Consensus 166 --~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~ 233 (693)
.|..+. ++++|++|++++|++.+..+..|+++++|++|++++|+ +++ ..+..+..+ ++|++|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 455677 99999999999999998888889999999999999998 886 333334444 999999999999
Q ss_pred cccCCh-hhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCC-ccEEEecCCCCCCc
Q psy8029 234 FQMFPK-DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN-ITNIVLTGHKKLTS 311 (693)
Q Consensus 234 l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~~l~~ 311 (693)
++.++. ..+..+++|++|++++|.+.+ .+| .|..+++|++|++++|.+..+|.. +..+++ |+.|++++| .++.
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g-~ip--~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N-~l~~ 391 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEG-KLP--AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHN-KLKY 391 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEE-ECC--CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSS-CCSS
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCcc-chh--hhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCC-cCcc
Confidence 998886 368999999999999999432 777 588999999999999999988865 677888 999999999 8888
Q ss_pred CChhhhcCC--CCCcEEEccCCCCCCCChhhhc-------cCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccc
Q psy8029 312 LPSTLFRDC--KKLVKLELQRNKLKYLPENLFE-------SLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLE 380 (693)
Q Consensus 312 l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~ 380 (693)
+|.. |... ++|++|++++|.++...+..|. .+++|+.|++++|+++.+|.. ..+++|++|++++|.++
T Consensus 392 lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 392 IPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred cchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 8875 3444 4899999999999876555556 678999999999999998876 67899999999999999
Q ss_pred cccccccCCCC-------CCcEEECCCCcCcccccccCCCCcc--CCCCCcEEECCCCCCCcCChhHHhcCCCCcEEEC-
Q psy8029 381 QINLIAFDGLS-------SLNTVDLSHNLLTFDEYQYGYSPLK--QCVNLETINLSYNRISSLFDDWISSMTSLKELDL- 450 (693)
Q Consensus 381 ~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L- 450 (693)
.++...+.... +|++|++++|.++.. +..+. .+++|++|+|++|+++++ |..+..+++|+.|+|
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-----SDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIR 544 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-----CGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSSCCEEECC
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCCcc-----ChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCCCCEEECC
Confidence 88777666543 999999999999954 55555 899999999999999995 556889999999999
Q ss_pred -----CCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccc
Q psy8029 451 -----RHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIAC 519 (693)
Q Consensus 451 -----~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 519 (693)
++|++.+..+..+..+++|+.|++++|+++.++.... ++++.+++++||+.|
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~-----------------~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT-----------------PNISVLDIKDNPNIS 601 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-----------------TTCCEEECCSCTTCE
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh-----------------CcCCEEECcCCCCcc
Confidence 5677887777788999999999999999987754422 358899999999986
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-39 Score=364.28 Aligned_cols=458 Identities=16% Similarity=0.124 Sum_probs=240.6
Q ss_pred ccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029 77 INTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156 (693)
Q Consensus 77 L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 156 (693)
.+.++++++ .++.++.... ++|++|++++| .++++++..|.++++|++|++++|.++++++.+|.++++|++|+
T Consensus 33 ~~~l~ls~~--~L~~ip~~~~---~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 33 ESMVDYSNR--NLTHVPKDLP---PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CCEEECTTS--CCCSCCTTSC---TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEcCCC--CCccCCCCCC---CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 356666666 6666663222 56666666666 66666666666666666666666666666555666666666666
Q ss_pred cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCC-hhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCC--cEEEcCCCc
Q psy8029 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL--QTFYANSNR 233 (693)
Q Consensus 157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~ 233 (693)
+++|.++.++.. .+++|++|++++|++++++ +..|+++++|++|++++|.++... +..+++| +.|++++|.
T Consensus 107 Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESS
T ss_pred CCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccc
Confidence 666666665543 5666666666666666544 245666666666666666665432 3333344 666666665
Q ss_pred c--ccCChhhhhccc-CceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC
Q psy8029 234 F--QMFPKDLFAEMK-YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310 (693)
Q Consensus 234 l--~~~~~~~~~~~~-~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~ 310 (693)
+ +...+..|..+. ..-.++++.|.+.. .++...+..+++|+.+++++|....- .+.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------~l~ 239 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFS-VQVNMSVNALGHLQLSNIKLNDENCQ--------------------RLM 239 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCC-CCCEEEESSEEEEEEEEEECCSTTHH--------------------HHH
T ss_pred ccccccCcccccccCcceEEEEecCccchh-hhhhhcccccceEEEecccccccccc--------------------hHH
Confidence 5 444333333322 01123444444222 33333344445555555554431000 000
Q ss_pred cCChhhhcCCCCCcEEEccCCCCCC-----CChhhhccCccCceEeccCCcCc-cccCc------cCCCCCCeEeCCCCc
Q psy8029 311 SLPSTLFRDCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNLKNNQLE-NITSL------VGLSGLNSLDLSWNQ 378 (693)
Q Consensus 311 ~l~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~Ls~n~l~-~l~~~------~~l~~L~~L~Ls~n~ 378 (693)
... ..|..+++|+.+++.++.+.. ++.. ...++|++|++++|.++ .+|.. ..++.|+.++++.+.
T Consensus 240 ~~~-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~ 316 (562)
T 3a79_B 240 TFL-SELTRGPTLLNVTLQHIETTWKCSVKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316 (562)
T ss_dssp HHH-HHHHSCSSCEEEEEEEEEECHHHHHHHHHH--HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred HHH-HHHhccCcceEEEecCCcCcHHHHHHHHHh--hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence 000 112344444444444443321 1111 11224555555555444 23322 122222223333333
Q ss_pred cccccccccCC---CCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCC
Q psy8029 379 LEQINLIAFDG---LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455 (693)
Q Consensus 379 l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 455 (693)
+ .++...+.. ..+|++|++++|.+... .....+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 317 ~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 389 (562)
T 3a79_B 317 F-LFSKEALYSVFAEMNIKMLSISDTPFIHM------VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389 (562)
T ss_dssp C-SSCHHHHHHHHHTCCCSEEEEESSCCCCC------CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC
T ss_pred e-ecChhhhhhhhccCcceEEEccCCCcccc------cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc
Confidence 2 111111111 13455555555555421 1114455555555555555555555555555556666665555
Q ss_pred ccCCC--cccccCCCccEEECCCCCCce-eeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhc
Q psy8029 456 SFIPD--QLDSIVSNKLTLDLSFNQIAI-VDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532 (693)
Q Consensus 456 ~~~~~--~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~ 532 (693)
++++. ..+..+++|+.|++++|++++ ++...+..+ .+++.+++++|.+.-
T Consensus 390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l--------------~~L~~L~l~~n~l~~------------- 442 (562)
T 3a79_B 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA--------------ESILVLNLSSNMLTG------------- 442 (562)
T ss_dssp CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC--------------TTCCEEECCSSCCCG-------------
T ss_pred CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc--------------ccCCEEECCCCCCCc-------------
Confidence 55442 234455555566666665554 333323222 235566666655320
Q ss_pred ccccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccCCCCCCCCcccc
Q psy8029 533 KMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDK 612 (693)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~ip~~~~~l~~~~ 612 (693)
.. ...+ | ..++.+++++|+++.+|+.+..+
T Consensus 443 ~~------------------------~~~l------------~----------~~L~~L~L~~N~l~~ip~~~~~l---- 472 (562)
T 3a79_B 443 SV------------------------FRCL------------P----------PKVKVLDLHNNRIMSIPKDVTHL---- 472 (562)
T ss_dssp GG------------------------GSSC------------C----------TTCSEEECCSSCCCCCCTTTTSS----
T ss_pred ch------------------------hhhh------------c----------CcCCEEECCCCcCcccChhhcCC----
Confidence 00 0000 0 23678889999999998877766
Q ss_pred CceEEEEEecCCccccCCCCCCcccccCcEEEccCCccc-cccC
Q psy8029 613 KATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS-HVDT 655 (693)
Q Consensus 613 ~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~ 655 (693)
..++.|+|++|+|+++++..++.+++|+.|++++|+++ ..+.
T Consensus 473 -~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 473 -QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp -CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred -CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 77889999999999888777899999999999999998 5543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-38 Score=343.48 Aligned_cols=386 Identities=21% Similarity=0.248 Sum_probs=272.6
Q ss_pred cEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcc-cccccccCCCCCCc
Q psy8029 51 NAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEIT-GLHKDIFKGTPQLE 129 (693)
Q Consensus 51 ~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~-~~~~~~~~~l~~L~ 129 (693)
+.++.+++.+.... . -.+++++|+++++ .++.+.+..|+++++|++|++++| .+. .+++..|.++++|+
T Consensus 13 ~~~~c~~~~l~~lp-----~--l~~~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~ 82 (455)
T 3v47_A 13 YNAICINRGLHQVP-----E--LPAHVNYVDLSLN--SIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLI 82 (455)
T ss_dssp TEEECCSSCCSSCC-----C--CCTTCCEEECCSS--CCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCC
T ss_pred cccCcCCCCcccCC-----C--CCCccCEEEecCC--ccCcCChhHhccCccccEEECcCC-cccceECcccccccccCC
Confidence 45565565554322 2 1267999999999 999998899999999999999999 776 68888899999999
Q ss_pred EEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChh--hhCCCCCCCEEEccCCCCCCCChhh-cCCCCCCcEEECc
Q psy8029 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPE--IFKNLTSLRILNLDHNQLINLTRAI-FNNVPNLRSLDIS 206 (693)
Q Consensus 130 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~ 206 (693)
+|++++|.++++.+..|+++++|++|++++|.+++..+. .|..+++|++|++++|+++++.+.. |.++++|++|+++
T Consensus 83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 999999999998888899999999999999999874443 4899999999999999999986654 8899999999999
Q ss_pred CCCCCcCCCCcCCCC--CCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC
Q psy8029 207 GNNISILPSGVFSDL--RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI 284 (693)
Q Consensus 207 ~n~i~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l 284 (693)
+|.++++.+..+..+ .+|+.|++++|.+..++...+.. ... ..+..+++|++|++++|.+
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~-~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----------------EKC-GNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----------------HHH-CCTTTTCEEEEEECTTSCC
T ss_pred CCcccccChhhhhccccccccccccccCcccccchhhccc-----------------ccc-ccccccceeeeEecCCCcc
Confidence 999999888777766 78999999999998776543220 000 0022334445555555544
Q ss_pred cccCcccccC---CCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhc--cCccCceEeccCCcCcc
Q psy8029 285 AELPSDLFWN---STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE--SLKELYTLNLKNNQLEN 359 (693)
Q Consensus 285 ~~~~~~~~~~---~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~ 359 (693)
.+..+..+.. .++++.+++++| ...... +..+.+.......|. ..++|+.|++++|++++
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNS-YNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTC-TTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred cccchhhhhccccccceeeEeeccc-cccccc--------------cchhhhccCcccccccccccCceEEEecCccccc
Confidence 4322222221 245555555555 211110 001111111111111 12456666666666665
Q ss_pred ccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChh
Q psy8029 360 ITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD 437 (693)
Q Consensus 360 l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 437 (693)
+... ..+++|++|++++|.++++.+..|.++++|++|++++|.++.. .+..+..+++|++|++++|+++++.+.
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI----DSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc----ChhHhcCcccCCEEECCCCcccccChh
Confidence 3322 5566677777777777777666777777777777777777654 245566777777888888877777777
Q ss_pred HHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceee
Q psy8029 438 WISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD 483 (693)
Q Consensus 438 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 483 (693)
.|..+++|++|++++|+|+++++..+..+++|+.|++++|++++..
T Consensus 366 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 7777888888888888888777777777778888888888887643
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=347.41 Aligned_cols=355 Identities=22% Similarity=0.333 Sum_probs=241.1
Q ss_pred cEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCC
Q psy8029 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232 (693)
Q Consensus 153 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 232 (693)
+.++.++++++.++... .+++++|++++|+++++.+..|.++++|++|+|++|.++.+.+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56788888888777542 357888888888888888777888888888888888888887777888888888888888
Q ss_pred ccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcC
Q psy8029 233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 312 (693)
Q Consensus 233 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l 312 (693)
.++.++...|.++++|++|++++|. +..+++..|..+++|++|++++|.+..+++..|.++++|+.|++++| .++.+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 167 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENK--IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSI 167 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSC
T ss_pred cCCccCcccccCCCCCCEEECCCCc--cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCccc
Confidence 8888887777777888888887777 44555556777777777777777777766666667777777777777 66666
Q ss_pred ChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCcc-ccCc-cCCCCCCeEeCCCCccccccccccCCC
Q psy8029 313 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN-ITSL-VGLSGLNSLDLSWNQLEQINLIAFDGL 390 (693)
Q Consensus 313 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l 390 (693)
+...|..+++|++|++++|.+..++...|..+++|+.|++++|.... ++.. ....+|++|++++|.+++++...|..
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~- 246 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH- 246 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT-
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC-
Confidence 66666677777777777777666666566666666666666655433 3322 22334555555555555444444444
Q ss_pred CCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCcc
Q psy8029 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL 470 (693)
Q Consensus 391 ~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 470 (693)
+++|++|+|++|.++++.+..|..+++|+.|+|++|+++++.+..+..+++|+
T Consensus 247 ---------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 247 ---------------------------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp ---------------------------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred ---------------------------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 44555555555555555554455555555555555555555555555556666
Q ss_pred EEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCcee
Q psy8029 471 TLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLE 550 (693)
Q Consensus 471 ~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (693)
.|++++|+++.++...+..+ ++++.+++++|||.|+|.+.|+.+|.... ....+...
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~l~~N~l~c~c~~~~~~~~~~~~---------~~~~~~~~ 356 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSV--------------GNLETLILDSNPLACDCRLLWVFRRRWRL---------NFNRQQPT 356 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCG--------------GGCCEEECCSSCEECSGGGHHHHTTTTSS---------CCTTCCCB
T ss_pred EEECCCCcCceeCHhHcCCC--------------cccCEEEccCCCccCccchHhHHhhhhcc---------ccCccCce
Confidence 66666666665555444433 34789999999999999999998764321 23445678
Q ss_pred ecCC---CCccccccCC
Q psy8029 551 CFGN---AGVGINSVRP 564 (693)
Q Consensus 551 c~~~---~~~~~~~l~~ 564 (693)
|..| +|..+.+++.
T Consensus 357 C~~p~~~~g~~l~~~~~ 373 (477)
T 2id5_A 357 CATPEFVQGKEFKDFPD 373 (477)
T ss_dssp EEESGGGTTCBGGGSCS
T ss_pred eCCchHHcCCchhhCcc
Confidence 9888 6777776653
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.2e-38 Score=340.96 Aligned_cols=343 Identities=24% Similarity=0.243 Sum_probs=142.0
Q ss_pred cccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCc
Q psy8029 74 ITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ 153 (693)
Q Consensus 74 ~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 153 (693)
.++|++|+++++ .++.++ ..++++++|++|++++| .+.+..+..++++++|+.+++.+|.. .+++
T Consensus 10 ~~~L~~L~l~~n--~l~~iP-~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~ 74 (454)
T 1jl5_A 10 NTFLQEPLRHSS--NLTEMP-VEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLD-----------RQAH 74 (454)
T ss_dssp ---------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCS
T ss_pred cccchhhhcccC--chhhCC-hhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhc-----------cCCC
Confidence 455666666666 666665 45666777777777766 66654444455555542222221110 1234
Q ss_pred EEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCc
Q psy8029 154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233 (693)
Q Consensus 154 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 233 (693)
+|++++|.+++++. -.++|++|++++|++++++. .+++|++|++++|.+++++.. .++|++|++++|.
T Consensus 75 ~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 75 ELELNNLGLSSLPE----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQ 142 (454)
T ss_dssp EEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSC
T ss_pred EEEecCCccccCCC----CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCC
Confidence 44444444444332 11344444444444444321 123444444444444433321 1344444444444
Q ss_pred cccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCC
Q psy8029 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 313 (693)
Q Consensus 234 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~ 313 (693)
++.++ .|.++++|++|++++|+ +..+|.. .++|++|++++|.+++++ .+.++++|+.|++++| .++.+|
T Consensus 143 l~~lp--~~~~l~~L~~L~l~~N~--l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N-~l~~l~ 211 (454)
T 1jl5_A 143 LEKLP--ELQNSSFLKIIDVDNNS--LKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNN-SLKKLP 211 (454)
T ss_dssp CSSCC--CCTTCTTCCEEECCSSC--CSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSS-CCSSCC
T ss_pred CCCCc--ccCCCCCCCEEECCCCc--CcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCC-cCCcCC
Confidence 44433 13444444444444443 2223321 124444444444444443 1344444444444444 444433
Q ss_pred hhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCC
Q psy8029 314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL 393 (693)
Q Consensus 314 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 393 (693)
.. .++|++|++++|.++.+|. |..+++|++|++++|++++++. .+++|++|++++|.+++++.. .++|
T Consensus 212 ~~----~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~l~~~----~~~L 279 (454)
T 1jl5_A 212 DL----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTDLPEL----PQSL 279 (454)
T ss_dssp CC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSCCCCC----CTTC
T ss_pred CC----cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcccccCcc----cCcC
Confidence 21 1345555555555554442 4455555555555555554443 234555555555555543321 2455
Q ss_pred cEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEE
Q psy8029 394 NTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLD 473 (693)
Q Consensus 394 ~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 473 (693)
++|++++|.+++.. . ..++|++|++++|.++++.. ..++|+.|++++|++++++.. +++|+.|+
T Consensus 280 ~~L~ls~N~l~~l~----~----~~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~ 343 (454)
T 1jl5_A 280 TFLDVSENIFSGLS----E----LPPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL----PPRLERLI 343 (454)
T ss_dssp CEEECCSSCCSEES----C----CCTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEE
T ss_pred CEEECcCCccCccc----C----cCCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccccccc----CCcCCEEE
Confidence 55555555555321 0 01355555555555554321 113555555555555554332 34555555
Q ss_pred CCCCCCcee
Q psy8029 474 LSFNQIAIV 482 (693)
Q Consensus 474 L~~N~l~~~ 482 (693)
+++|+++.+
T Consensus 344 L~~N~l~~l 352 (454)
T 1jl5_A 344 ASFNHLAEV 352 (454)
T ss_dssp CCSSCCSCC
T ss_pred CCCCccccc
Confidence 555555543
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.9e-37 Score=334.04 Aligned_cols=345 Identities=23% Similarity=0.369 Sum_probs=184.1
Q ss_pred ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029 75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154 (693)
Q Consensus 75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 154 (693)
+.++.|++.++ .++.++ .+..+++|++|++++| .++++++ +.++++|++|++++|.++++++ |.++++|++
T Consensus 46 ~~l~~L~l~~~--~i~~l~--~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRL--GIKSID--GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSS--CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred ccccEEecCCC--CCccCc--chhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34555566555 555554 2555556666666665 5555554 5555666666666665555544 455566666
Q ss_pred EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcc
Q psy8029 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234 (693)
Q Consensus 155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 234 (693)
|++++|.++++++ +..+++|++|++++|.+++++. +..+++|++|+++ |.+..+++ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcC
Confidence 6666655555543 5555566666666555555432 4555555555554 33333322 45555555555555555
Q ss_pred ccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCCh
Q psy8029 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 314 (693)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~ 314 (693)
+.++. +..+++|++|++++| .+.++++ +..+++|+.|++++| .++.++.
T Consensus 190 ~~~~~--l~~l~~L~~L~l~~n--------------------------~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~ 238 (466)
T 1o6v_A 190 SDISV--LAKLTNLESLIATNN--------------------------QISDITP--LGILTNLDELSLNGN-QLKDIGT 238 (466)
T ss_dssp CCCGG--GGGCTTCSEEECCSS--------------------------CCCCCGG--GGGCTTCCEEECCSS-CCCCCGG
T ss_pred CCChh--hccCCCCCEEEecCC--------------------------ccccccc--ccccCCCCEEECCCC-Ccccchh
Confidence 54432 344455555555554 4444332 333444555555544 4444422
Q ss_pred hhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCc
Q psy8029 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN 394 (693)
Q Consensus 315 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 394 (693)
+..+++|++|++++|.++.+++ +..+++|+.|++++|++++++....+++|++|++++|.+.++.+ +..+++|+
T Consensus 239 --l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 239 --LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp --GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred --hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 3445555555555555554443 44555555555555555555444555555555555555555443 44555566
Q ss_pred EEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEEC
Q psy8029 395 TVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDL 474 (693)
Q Consensus 395 ~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 474 (693)
.|++++|.+++. .++..+++|++|++++|.++++. .+..+++|+.|++++|++++.++ +..+++|+.|++
T Consensus 313 ~L~L~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 313 YLTLYFNNISDI------SPVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp EEECCSSCCSCC------GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred EEECcCCcCCCc------hhhccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 666666555532 22455556666666666655542 35556666666666666655544 455556666666
Q ss_pred CCCCCcee
Q psy8029 475 SFNQIAIV 482 (693)
Q Consensus 475 ~~N~l~~~ 482 (693)
++|+++..
T Consensus 383 ~~n~~~~~ 390 (466)
T 1o6v_A 383 NDQAWTNA 390 (466)
T ss_dssp CCEEEECC
T ss_pred cCCcccCC
Confidence 66666554
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.7e-37 Score=334.13 Aligned_cols=343 Identities=26% Similarity=0.383 Sum_probs=254.9
Q ss_pred CCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECc
Q psy8029 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206 (693)
Q Consensus 127 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 206 (693)
+++.|+++++.++.++. +..+++|++|++++|.++++++ +.++++|++|++++|+++++.+ ++.+++|++|+++
T Consensus 47 ~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 34444444444444332 3344444444444444444433 4445555555555555544443 4555555555555
Q ss_pred CCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcc
Q psy8029 207 GNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286 (693)
Q Consensus 207 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~ 286 (693)
+|.++.+++ +..+++|++|++++|.+..++. +..+++|++|+++++ ...+++ +..+++|++|++++|.+..
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~~---~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ---VTDLKP--LANLTTLERLDISSNKVSD 191 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEEES---CCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEeecCCc---ccCchh--hccCCCCCEEECcCCcCCC
Confidence 555555443 4555566666666666555442 566677777777543 223333 6788889999999888887
Q ss_pred cCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCC
Q psy8029 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366 (693)
Q Consensus 287 ~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l 366 (693)
++. +..+++|+.|++++| .+..+++ +..+++|++|++++|.++.++. +..+++|+.|++++|.+++++....+
T Consensus 192 ~~~--l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l 264 (466)
T 1o6v_A 192 ISV--LAKLTNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGL 264 (466)
T ss_dssp CGG--GGGCTTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGGGTTC
T ss_pred Chh--hccCCCCCEEEecCC-ccccccc--ccccCCCCEEECCCCCcccchh--hhcCCCCCEEECCCCccccchhhhcC
Confidence 753 678999999999999 8877766 5779999999999999998854 78899999999999999998888899
Q ss_pred CCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCc
Q psy8029 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446 (693)
Q Consensus 367 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 446 (693)
++|++|++++|.++++.+ +..+++|+.|++++|.+++. .++..+++|++|++++|.++++.+ +..+++|+
T Consensus 265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC------GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc------hhhcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 999999999999999876 88899999999999999854 347889999999999999999877 78999999
Q ss_pred EEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccc
Q psy8029 447 ELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIAC 519 (693)
Q Consensus 447 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 519 (693)
.|++++|++++++ .+..+++|+.|++++|++++..+ +..+ ++++.+++++|+|..
T Consensus 335 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l--------------~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 335 RLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANL--------------TRITQLGLNDQAWTN 389 (466)
T ss_dssp EEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTC--------------TTCCEEECCCEEEEC
T ss_pred EeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcC--------------CCCCEEeccCCcccC
Confidence 9999999999983 47889999999999999998765 3333 458899999999986
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.7e-36 Score=325.85 Aligned_cols=317 Identities=23% Similarity=0.324 Sum_probs=184.9
Q ss_pred EEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcC
Q psy8029 79 TLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG 158 (693)
Q Consensus 79 ~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 158 (693)
.++.++. .++.++.. + .+++++|+|++| .++.+++..|.++++|++|+|++|.++++.+..|.++++|++|+|+
T Consensus 15 ~v~c~~~--~l~~ip~~-~--~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 15 AVLCHRK--RFVAVPEG-I--PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp EEECCSC--CCSSCCSC-C--CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEeCCC--CcCcCCCC-C--CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 4555555 56666532 2 145666666666 6666666666666666666666666666655556666666666666
Q ss_pred CCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCC
Q psy8029 159 SNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238 (693)
Q Consensus 159 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 238 (693)
+|.++.+++..|.++++|++|++++|+++.+.+..|..+++|++|++++|.++.+.+..|.++++|+.|++++|.++.++
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 66666666655666666666666666666665555666666666666666666665555666666666666666665555
Q ss_pred hhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhc
Q psy8029 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318 (693)
Q Consensus 239 ~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~ 318 (693)
...|..+++|+.|++++|. +..++...|..+++|+.|++++|..++.++...+.
T Consensus 169 ~~~l~~l~~L~~L~l~~n~--------------------------i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLN--------------------------INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp HHHHTTCTTCCEEEEESCC--------------------------CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred hhHhcccCCCcEEeCCCCc--------------------------CcEeChhhcccCcccceeeCCCCccccccCccccc
Confidence 5555555555555555554 44444444455555666666665455555555443
Q ss_pred CCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEE
Q psy8029 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV 396 (693)
Q Consensus 319 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 396 (693)
..+|++|++++|.++.++...|..+++|+.|++++|+++.++.. ..+++|++|+|++|.++++.+.+|.++++|++|
T Consensus 223 -~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 223 -GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp -TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred -CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence 34677777777777777766666666666666666666554432 445555555555555555555555555555555
Q ss_pred ECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC
Q psy8029 397 DLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432 (693)
Q Consensus 397 ~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 432 (693)
++++|.++.. ....|..+++|++|++++|.+.
T Consensus 302 ~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 302 NVSGNQLTTL----EESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSSCCSCC----CGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCCcCcee----CHhHcCCCcccCEEEccCCCcc
Confidence 5555555433 1223444455555555555444
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-35 Score=316.54 Aligned_cols=291 Identities=22% Similarity=0.333 Sum_probs=208.9
Q ss_pred CCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEE
Q psy8029 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD 204 (693)
Q Consensus 125 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 204 (693)
++++++|++++|.++.+|...|..+++|++|++++|.++.+++..|..+++|++|++++|+++++++..|+.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57888999999888888888888888999999998888888888888888899999988888888888788888888888
Q ss_pred CcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC
Q psy8029 205 ISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI 284 (693)
Q Consensus 205 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l 284 (693)
+++|.++.++...|..+++|++|++++|.++.+++..|..+++|++|++++|. +..++ +..+++|+.+++++|.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCC---GGGCTTCSEEECCSSCC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc--CCccc---cccccccceeecccccc
Confidence 88888888888777888888888888888877776666666667777666665 22332 23344455555544443
Q ss_pred cccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCcc
Q psy8029 285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364 (693)
Q Consensus 285 ~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~ 364 (693)
.. ++ ..++|++|++++|.++.++.. ..++|+.|++++|.+++.+...
T Consensus 199 ~~-------------------------~~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~l~ 245 (390)
T 3o6n_A 199 ST-------------------------LA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDTAWLL 245 (390)
T ss_dssp SE-------------------------EE-----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCCGGGG
T ss_pred cc-------------------------cC-----CCCcceEEECCCCeeeecccc---ccccccEEECCCCCCcccHHHc
Confidence 32 21 223566666666666655432 2456777777777777665556
Q ss_pred CCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCC
Q psy8029 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTS 444 (693)
Q Consensus 365 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 444 (693)
.+++|++|++++|.++++.+..|..+++|++|++++|.++.. +..+..+++|++|++++|+++++++. +..+++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~ 319 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDR 319 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-----ECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTT
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-----CcccCCCCCCCEEECCCCcceecCcc-ccccCc
Confidence 677777888888888777777777788888888888877754 23345567777777777777765443 566667
Q ss_pred CcEEECCCCCCccCC
Q psy8029 445 LKELDLRHNNFSFIP 459 (693)
Q Consensus 445 L~~L~L~~N~l~~~~ 459 (693)
|+.|++++|+|+.++
T Consensus 320 L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 320 LENLYLDHNSIVTLK 334 (390)
T ss_dssp CSEEECCSSCCCCCC
T ss_pred CCEEECCCCccceeC
Confidence 777777777666553
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.8e-35 Score=319.52 Aligned_cols=373 Identities=23% Similarity=0.249 Sum_probs=256.5
Q ss_pred CCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccc-------------cEEEccCCcCc
Q psy8029 48 GPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFV-------------KHILLSHNKEI 114 (693)
Q Consensus 48 ~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L-------------~~L~Ls~n~~i 114 (693)
.+++++.++++.+. .++.. ...++.|+.|+++++ .++...+..++++.+| ++|++++| ++
T Consensus 11 ~~L~~L~l~~n~l~--~iP~~--i~~L~~L~~L~l~~n--~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l 83 (454)
T 1jl5_A 11 TFLQEPLRHSSNLT--EMPVE--AENVKSKTEYYNAWS--EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GL 83 (454)
T ss_dssp ---------------------------CCHHHHHHHHH--HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CC
T ss_pred ccchhhhcccCchh--hCChh--HhcccchhhhhccCC--cccccCCcccccchhcchhhhhhhhccCCCEEEecCC-cc
Confidence 57788999998883 33322 246888999999998 8875555788888875 88999998 88
Q ss_pred ccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhc
Q psy8029 115 TGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIF 194 (693)
Q Consensus 115 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 194 (693)
++++.. .++|++|++++|.++++|.. .++|++|++++|.+++++.. .++|++|++++|++++++ .|
T Consensus 84 ~~lp~~----~~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp--~~ 149 (454)
T 1jl5_A 84 SSLPEL----PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--EL 149 (454)
T ss_dssp SCCCSC----CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--CC
T ss_pred ccCCCC----cCCCCEEEccCCcCCccccc----cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--cc
Confidence 887762 36889999999988887642 47889999998888876531 268899999999888866 38
Q ss_pred CCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCc
Q psy8029 195 NNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLL 274 (693)
Q Consensus 195 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L 274 (693)
+++++|++|++++|++++++.. .++|++|++++|.++.++. +..+++|++|++++|. +..+|.. .++|
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~--l~~l~~~----~~~L 217 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNS--LKKLPDL----PLSL 217 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSC--CSSCCCC----CTTC
T ss_pred CCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCc--CCcCCCC----cCcc
Confidence 8888999999999988887643 3588899999988888763 7888888899888887 4455543 2588
Q ss_pred cEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccC
Q psy8029 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354 (693)
Q Consensus 275 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~ 354 (693)
++|++++|.+..++. +..+++|++|++++| .+..+|.. +++|++|++++|.++.+|.. +++|+.|++++
T Consensus 218 ~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~ 286 (454)
T 1jl5_A 218 ESIVAGNNILEELPE--LQNLPFLTTIYADNN-LLKTLPDL----PPSLEALNVRDNYLTDLPEL----PQSLTFLDVSE 286 (454)
T ss_dssp CEEECCSSCCSSCCC--CTTCTTCCEEECCSS-CCSSCCSC----CTTCCEEECCSSCCSCCCCC----CTTCCEEECCS
T ss_pred cEEECcCCcCCcccc--cCCCCCCCEEECCCC-cCCccccc----ccccCEEECCCCcccccCcc----cCcCCEEECcC
Confidence 888888888887773 678888888888888 77777752 47888888888888887752 47888888888
Q ss_pred CcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcC
Q psy8029 355 NQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434 (693)
Q Consensus 355 n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 434 (693)
|++++++.. .++|++|++++|.++++.. ..++|++|++++|++++. +. .+++|++|++++|+++++
T Consensus 287 N~l~~l~~~--~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~l-----p~---~~~~L~~L~L~~N~l~~l 352 (454)
T 1jl5_A 287 NIFSGLSEL--PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIEL-----PA---LPPRLERLIASFNHLAEV 352 (454)
T ss_dssp SCCSEESCC--CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSCC
T ss_pred CccCcccCc--CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCccccc-----cc---cCCcCCEEECCCCccccc
Confidence 888876643 3678888888888887542 125788888888888753 21 257888888888888876
Q ss_pred ChhHHhcCCCCcEEECCCCCCccCC--CcccccC-------------CCccEEECCCCCCcee
Q psy8029 435 FDDWISSMTSLKELDLRHNNFSFIP--DQLDSIV-------------SNKLTLDLSFNQIAIV 482 (693)
Q Consensus 435 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l-------------~~L~~L~L~~N~l~~~ 482 (693)
+. .+++|+.|++++|++++++ +..+..+ ++|+.|++++|+++++
T Consensus 353 p~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 353 PE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp CC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred cc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 55 4678888888888888732 3334444 6677888888877753
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.8e-34 Score=311.86 Aligned_cols=313 Identities=22% Similarity=0.244 Sum_probs=154.5
Q ss_pred cCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCC
Q psy8029 96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTS 175 (693)
Q Consensus 96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 175 (693)
.++++++|++|++++| .+++++ .+..+++|++|++++|.+++++ ++.+++|++|++++|.+++++ ++++++
T Consensus 37 ~~~~l~~L~~L~Ls~n-~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS-SITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSS-CCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred ChhHcCCCCEEEccCC-CcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCc
Confidence 4445555555555555 555553 2455555555555555555542 455555555555555555542 455555
Q ss_pred CCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCc-cccCChhhhhcccCceEEEEe
Q psy8029 176 LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR-FQMFPKDLFAEMKYLQVIKIS 254 (693)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~ 254 (693)
|++|++++|++++++ ++.+++|++|++++|.+++++ +..+++|++|++++|. +..++ +..+++|++|+++
T Consensus 108 L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls 178 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCS 178 (457)
T ss_dssp CCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECC
T ss_pred CCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCcccccc---cccCCcCCEEECC
Confidence 555555555555542 455555555555555555542 4455555555555552 22331 3445555555555
Q ss_pred cCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC
Q psy8029 255 YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334 (693)
Q Consensus 255 ~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~ 334 (693)
+|. ++.++ +..+++|+.|++++|.+++++ +..+++|+.|++++| .++.+| +..+++|++|++++|.++
T Consensus 179 ~n~--l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N-~l~~ip---~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 179 FNK--ITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSN-KLTEID---VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp SSC--CCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCS
T ss_pred CCc--cceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCC-cccccC---ccccCCCCEEEeeCCcCC
Confidence 555 33333 445555555555555555542 445555555555555 555554 345555666666666555
Q ss_pred CCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccc----c
Q psy8029 335 YLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQ----Y 410 (693)
Q Consensus 335 ~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~ 410 (693)
.++. ..+++|+.|++++|+ |+.|++++|.+.+..+ ++.+++|+.|++++|...+.-+. .
T Consensus 247 ~~~~---~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L 309 (457)
T 3bz5_A 247 ELDV---STLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGI 309 (457)
T ss_dssp CCCC---TTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred CcCH---HHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcc
Confidence 5542 234444444444432 2223333333222211 22333333333333322111000 0
Q ss_pred CCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccC
Q psy8029 411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFI 458 (693)
Q Consensus 411 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 458 (693)
....++.+++|++|++++|+++++. ++.+++|+.|++++|+|+++
T Consensus 310 ~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 310 TELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCBC
T ss_pred eEechhhcccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCCc
Confidence 0112344456666666666666642 55566666666666666553
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.1e-34 Score=297.65 Aligned_cols=307 Identities=21% Similarity=0.330 Sum_probs=215.3
Q ss_pred cCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCc
Q psy8029 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLR 201 (693)
Q Consensus 122 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 201 (693)
+..+++|++|+++++.++.++. +..+++|++|++++|.++++++ +..+++|++|++++|+++.++ .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCS
T ss_pred chhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCC
Confidence 3456677777777777766654 5667777777777777776655 667777777777777766653 366666777
Q ss_pred EEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCC
Q psy8029 202 SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE 281 (693)
Q Consensus 202 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~ 281 (693)
+|++++|.++.+++ +..+++|+.|++++|......+. +..+++|++|++++
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~---------------------------~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP---------------------------LSNMTGLNYLTVTE 164 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG---------------------------GTTCTTCCEEECCS
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc---------------------------hhhCCCCcEEEecC
Confidence 77777666666554 55566666666666533222111 34455555555555
Q ss_pred CCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCcccc
Q psy8029 282 SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 361 (693)
Q Consensus 282 n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~ 361 (693)
|.+..++. +..+++|+.|++++| .+..++. +..+++|+.+++++|.++.++. +..+++|++|++++|+++.++
T Consensus 165 ~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 165 SKVKDVTP--IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp SCCCCCGG--GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CCcCCchh--hccCCCCCEEEccCC-ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc
Confidence 55554443 455666666666666 5655554 4567777777777777776665 567777888888888777777
Q ss_pred CccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhc
Q psy8029 362 SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISS 441 (693)
Q Consensus 362 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 441 (693)
....+++|++|++++|.++++ ..+..+++|++|++++|.++.. ..+..+++|++|++++|.+++..+..+..
T Consensus 238 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 238 PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred chhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 677777888888888888776 3577788888888888888743 35677889999999999999888888899
Q ss_pred CCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCc
Q psy8029 442 MTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIA 480 (693)
Q Consensus 442 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 480 (693)
+++|+.|++++|+++++++ +..+++|+.|++++|+|+
T Consensus 310 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999999999998876 678888999999999876
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3e-34 Score=305.35 Aligned_cols=287 Identities=26% Similarity=0.382 Sum_probs=167.3
Q ss_pred cccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEE
Q psy8029 100 LHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179 (693)
Q Consensus 100 l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 179 (693)
++++++|+++++ .++.++...|.++++|++|++++|.++++++..|..+++|++|++++|.+.++++..|.++++|++|
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 355566666666 5666665555556666666666666666555556666666666666666666666556666666666
Q ss_pred EccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCc
Q psy8029 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS 259 (693)
Q Consensus 180 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 259 (693)
++++|+++.+++..|+.+++|++|++++|.++.+++..|..+++|++|++++|.++.++ +..+++|+.+++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence 66666666665555566666666666666666666655666666666666666666554 234566667777666522
Q ss_pred ccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChh
Q psy8029 260 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 339 (693)
Q Consensus 260 ~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 339 (693)
.+ ...+.|++|++++|.+..++... .++|+.|++++| .++..+ .+..+++|++|++++|.++.+++.
T Consensus 200 --~~-----~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 200 --TL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHN-NLTDTA--WLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp --EE-----ECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSCCCEEESG
T ss_pred --cc-----CCCCcceEEECCCCeeeeccccc---cccccEEECCCC-CCcccH--HHcCCCCccEEECCCCcCCCcChh
Confidence 22 23346777777777776654322 355666666666 555542 245666666666666666665555
Q ss_pred hhccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCc
Q psy8029 340 LFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404 (693)
Q Consensus 340 ~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 404 (693)
.|..+++|+.|++++|++++++.. ..+++|++|++++|.+.++++ .+..+++|++|++++|.++
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCC
T ss_pred HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCc-cccccCcCCEEECCCCccc
Confidence 556666666666666666555443 344555555555555544332 2333344444444444443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-34 Score=322.54 Aligned_cols=291 Identities=23% Similarity=0.340 Sum_probs=199.3
Q ss_pred CCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEE
Q psy8029 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD 204 (693)
Q Consensus 125 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 204 (693)
+.+++.+++++|.+..+|+..|..+++|++|++++|.+.++++..|..+++|++|+|++|.++++++..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 46778888888888888877777788888888888888888777778888888888888888887777777788888888
Q ss_pred CcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC
Q psy8029 205 ISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI 284 (693)
Q Consensus 205 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l 284 (693)
+++|.++.+++..|.++++|++|++++|.++.+++..|..+++|++|++++|. +..++ +..+++|+.|++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~---~~~l~~L~~L~l----- 199 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVD---LSLIPSLFHANV----- 199 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBCC---GGGCTTCSEEEC-----
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCcC---hhhhhhhhhhhc-----
Confidence 88888887777777777777777777777776666556666666666666655 22222 223344444444
Q ss_pred cccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCcc
Q psy8029 285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364 (693)
Q Consensus 285 ~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~ 364 (693)
++| .++.++ ..++|++|++++|.++.++... .++|+.|++++|.+++.+...
T Consensus 200 -------------------~~n-~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~l~ 251 (597)
T 3oja_B 200 -------------------SYN-LLSTLA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDTAWLL 251 (597)
T ss_dssp -------------------CSS-CCSEEE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCCGGGG
T ss_pred -------------------ccC-cccccc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCChhhc
Confidence 444 333221 2345666666666666554422 356777777777777665556
Q ss_pred CCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCC
Q psy8029 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTS 444 (693)
Q Consensus 365 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 444 (693)
.+++|++|+|++|.+.++.+..|..+++|+.|+|++|.+++. +..+..+++|+.|+|++|.++++++. +..+++
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~ 325 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDR 325 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTT
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-----CcccccCCCCcEEECCCCCCCccCcc-cccCCC
Confidence 677777788888888777777777777888888887777754 33345567777777777777765433 566677
Q ss_pred CcEEECCCCCCccCC
Q psy8029 445 LKELDLRHNNFSFIP 459 (693)
Q Consensus 445 L~~L~L~~N~l~~~~ 459 (693)
|+.|+|++|+|++++
T Consensus 326 L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 326 LENLYLDHNSIVTLK 340 (597)
T ss_dssp CSEEECCSSCCCCCC
T ss_pred CCEEECCCCCCCCcC
Confidence 777777777666553
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.7e-34 Score=296.60 Aligned_cols=308 Identities=22% Similarity=0.372 Sum_probs=190.2
Q ss_pred cCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCC
Q psy8029 96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTS 175 (693)
Q Consensus 96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 175 (693)
.+..+++|++|+++++ .+..++. +..+++|++|++++|.+++++. |..+++|++|++++|.++.++ .+..+++
T Consensus 39 ~~~~l~~L~~L~l~~~-~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGE-KVASIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTT
T ss_pred cchhcccccEEEEeCC-ccccchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCc
Confidence 3556778888888888 7777754 6778888888888888877765 678888888888888877763 3778888
Q ss_pred CCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEec
Q psy8029 176 LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY 255 (693)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 255 (693)
|++|++++|+++++++ +..+++|++|++++|......+. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 8888888888877655 67888888888888854433322 6778888888888887776654 55666777777766
Q ss_pred CCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCC
Q psy8029 256 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335 (693)
Q Consensus 256 n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~ 335 (693)
|. +..++. +..+++|+.+++++|.+..++. +..+++|+.|++++| .++.++. +..+++|++|++++|.++.
T Consensus 187 n~--l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 187 NQ--IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN-KITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp SC--CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred Cc--cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC-ccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 65 334433 4555666666666665555443 344555555555555 4444443 3445555555555555544
Q ss_pred CChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCc
Q psy8029 336 LPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPL 415 (693)
Q Consensus 336 ~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 415 (693)
++. +..+++|+.|++++|++++++. +..+++|++|++++|.++.. .+..+
T Consensus 258 ~~~--~~~l~~L~~L~l~~n~l~~~~~------------------------~~~l~~L~~L~L~~n~l~~~----~~~~l 307 (347)
T 4fmz_A 258 INA--VKDLTKLKMLNVGSNQISDISV------------------------LNNLSQLNSLFLNNNQLGNE----DMEVI 307 (347)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGG------------------------GGGCTTCSEEECCSSCCCGG----GHHHH
T ss_pred Chh--HhcCCCcCEEEccCCccCCChh------------------------hcCCCCCCEEECcCCcCCCc----ChhHh
Confidence 422 3444445555555444444433 44445555555555554433 12334
Q ss_pred cCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCc
Q psy8029 416 KQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456 (693)
Q Consensus 416 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 456 (693)
..+++|++|++++|.++++++ +..+++|+.|++++|+|+
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 445555555555555555544 455666666666666554
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.4e-33 Score=303.11 Aligned_cols=318 Identities=21% Similarity=0.215 Sum_probs=262.7
Q ss_pred CcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChh
Q psy8029 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRA 192 (693)
Q Consensus 113 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 192 (693)
.+.......++++++|++|++++|.+++++ .|..+++|++|++++|.+++++ ++.+++|++|++++|++++++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--
Confidence 334444445778899999999999999886 3789999999999999999984 789999999999999999874
Q ss_pred hcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCC
Q psy8029 193 IFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272 (693)
Q Consensus 193 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~ 272 (693)
++.+++|++|++++|.+++++ +..+++|++|++++|.++.++ +..+++|++|++++|.. +..+ .+..++
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~-~~~~---~~~~l~ 170 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK-ITKL---DVTPQT 170 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSC-CCCC---CCTTCT
T ss_pred -cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCc-cccc---ccccCC
Confidence 789999999999999999874 788999999999999999875 67889999999999853 2233 367889
Q ss_pred CccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEec
Q psy8029 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL 352 (693)
Q Consensus 273 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 352 (693)
+|+.|++++|.+++++ +..+++|+.|++++| .++.++ +..+++|++|++++|+++.+| +..+++|+.|++
T Consensus 171 ~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N-~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l 240 (457)
T 3bz5_A 171 QLTTLDCSFNKITELD---VSQNKLLNRLNCDTN-NITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDC 240 (457)
T ss_dssp TCCEEECCSSCCCCCC---CTTCTTCCEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEEC
T ss_pred cCCEEECCCCccceec---cccCCCCCEEECcCC-cCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEe
Confidence 9999999999998886 677888999999988 777774 577889999999999888877 567888999999
Q ss_pred cCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC
Q psy8029 353 KNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432 (693)
Q Consensus 353 s~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 432 (693)
++|++++++ ...+++|+.|++++| +|+.|++++|.+.+. .++..+++|+.|++++|...
T Consensus 241 ~~N~l~~~~-~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~------~~~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 241 SVNPLTELD-VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIY------FQAEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCE------EECTTCTTCCCCCCTTCTTC
T ss_pred eCCcCCCcC-HHHCCCCCEEeccCC--------------CCCEEECCCCccCCc------ccccccccCCEEECCCCccc
Confidence 999888876 456788888888765 456777888876633 34577899999999999755
Q ss_pred cCChh--------HHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCcee
Q psy8029 433 SLFDD--------WISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV 482 (693)
Q Consensus 433 ~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 482 (693)
+..|. .+.++++|+.|++++|++++++ +..+++|+.|++++|+++++
T Consensus 300 ~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCBC
T ss_pred ceeccCCCcceEechhhcccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCCc
Confidence 43332 2557789999999999999973 67889999999999999974
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.4e-33 Score=312.65 Aligned_cols=309 Identities=26% Similarity=0.359 Sum_probs=194.8
Q ss_pred cccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEE
Q psy8029 100 LHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179 (693)
Q Consensus 100 l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 179 (693)
+.+++.+++++| .+..+++..|.++++|++|++++|.++++++..|+.+++|++|+|++|.+.++++..|+++++|++|
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 455666666666 6666666666666666666666666666666566666666666666666666666666666666666
Q ss_pred EccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCc
Q psy8029 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS 259 (693)
Q Consensus 180 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 259 (693)
++++|.++.+++..|+++++|++|++++|.++.+++..|..+++|++|++++|.++.++. ..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---GGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh---hhhhhhhhhhcccCccc
Confidence 666666666666666666667777777776666666666666777777777776666653 34566777777776532
Q ss_pred ccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChh
Q psy8029 260 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 339 (693)
Q Consensus 260 ~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 339 (693)
. +...+.|+.|++++|.+..++... .++|+.|++++| .++..+ .+..+++|++|++++|.++.+++.
T Consensus 206 --~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n-~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 206 --T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHN-NLTDTA--WLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp --E-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSCCCEEESG
T ss_pred --c-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCC-CCCCCh--hhccCCCCCEEECCCCccCCCCHH
Confidence 2 233446777777777776655433 246677777776 555542 245677777777777777766555
Q ss_pred hhccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCC
Q psy8029 340 LFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQC 418 (693)
Q Consensus 340 ~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l 418 (693)
.|..+++|+.|+|++|.+++++.. ..+++|++|+|++|.+.++++ .+..+++|++|++++|.++.. ++..+
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~-------~~~~~ 344 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTL-------KLSTH 344 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCC-------CCCTT
T ss_pred HhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCc-------Chhhc
Confidence 566677777777777777666554 446666666666666665433 344555666666666665522 24445
Q ss_pred CCCcEEECCCCCCCc
Q psy8029 419 VNLETINLSYNRISS 433 (693)
Q Consensus 419 ~~L~~L~Ls~n~l~~ 433 (693)
++|+.|++++|.+.+
T Consensus 345 ~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 345 HTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCSEEECCSSCEEH
T ss_pred CCCCEEEeeCCCCCC
Confidence 555555555555543
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=294.43 Aligned_cols=291 Identities=22% Similarity=0.308 Sum_probs=223.5
Q ss_pred eEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEc
Q psy8029 249 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328 (693)
Q Consensus 249 ~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l 328 (693)
+.++..+.. ++.+|.... ++++.|++++|.+..++...|.++++|++|++++| .+..++...|.++++|++|++
T Consensus 46 ~~v~c~~~~--l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 46 SKVICVRKN--LREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp CEEECCSCC--CSSCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEEC
T ss_pred CEEEeCCCC--cCcCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEEC
Confidence 344444444 445555422 45666777777777666666677777777777777 677777666777777777777
Q ss_pred cCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCC-CccccccccccCCCCCCcEEECCCCcCcc
Q psy8029 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSW-NQLEQINLIAFDGLSSLNTVDLSHNLLTF 405 (693)
Q Consensus 329 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 405 (693)
++|.++.++...|..+++|++|++++|+++.++.. ..+++|++|++++ +.+..+.+..|.++++|++|++++|.++.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 77777777776677777777777777777776653 6777888888887 55667777788899999999999999884
Q ss_pred cccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeecc
Q psy8029 406 DEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLR 485 (693)
Q Consensus 406 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 485 (693)
. ..+..+++|++|+|++|.++++.+..|.++++|+.|++++|+|+++++..+..+++|+.|+|++|+++.++..
T Consensus 200 ~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 200 I------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp C------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred c------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 3 3578889999999999999999999999999999999999999999998899999999999999999988877
Q ss_pred chhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCcccccc
Q psy8029 486 TLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSV 562 (693)
Q Consensus 486 ~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l 562 (693)
.+..+ ++++.+++++|||.|||++.|+..|++..... .....+.|..| +|..+.++
T Consensus 274 ~~~~l--------------~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~-------~~~~~~~C~~P~~l~g~~l~~l 332 (440)
T 3zyj_A 274 LFTPL--------------HHLERIHLHHNPWNCNCDILWLSWWIKDMAPS-------NTACCARCNTPPNLKGRYIGEL 332 (440)
T ss_dssp TTSSC--------------TTCCEEECCSSCEECSSTTHHHHHHHHTTSCS-------SCSCCCBEEESTTTTTCBCC--
T ss_pred Hhccc--------------cCCCEEEcCCCCccCCCCchHHHHHHHhcccc-------CCccccCCCChhHhcCccHhHh
Confidence 76654 45889999999999999999999999875322 12235789988 78888888
Q ss_pred CCCCCcccCC
Q psy8029 563 RPENLTCDTK 572 (693)
Q Consensus 563 ~~~~l~c~~~ 572 (693)
+...+.|..+
T Consensus 333 ~~~~~~C~~P 342 (440)
T 3zyj_A 333 DQNYFTCYAP 342 (440)
T ss_dssp --CCSCCCCC
T ss_pred hhhhccCCCC
Confidence 8888888643
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.8e-32 Score=281.03 Aligned_cols=294 Identities=20% Similarity=0.306 Sum_probs=159.1
Q ss_pred CcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcC
Q psy8029 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG 207 (693)
Q Consensus 128 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 207 (693)
++.++++++.++.+|... .++|++|++++|.+.++++..|.++++|++|++++|+++++.+..|+++++|++|++++
T Consensus 35 l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 444444444444443322 13444444444444444444444444444444444444444444444444444444444
Q ss_pred CCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCccc
Q psy8029 208 NNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287 (693)
Q Consensus 208 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~ 287 (693)
|.++.++...+ ++|++|++++|.++.++...|..+++|++|++++|.+....+....|..+ +|+.|++++|.++.+
T Consensus 112 n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 44444443322 44555555555555554444555555555555555432112333345555 677777777777766
Q ss_pred CcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cCC
Q psy8029 288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGL 366 (693)
Q Consensus 288 ~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~l 366 (693)
+...+ ++|++|++++| .++.++...|..+++|++|++++|.++.++...|..+++|+.|++++|+++.+|.. ..+
T Consensus 188 ~~~~~---~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l 263 (332)
T 2ft3_A 188 PKDLP---ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263 (332)
T ss_dssp CSSSC---SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGC
T ss_pred Ccccc---CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcC
Confidence 65443 56667777777 66666655566777777777777777777666667777777777777777766654 556
Q ss_pred CCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC--cCChhHHhcCCC
Q psy8029 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS--SLFDDWISSMTS 444 (693)
Q Consensus 367 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~ 444 (693)
++|++|++++|.++++++..|.... .....+.|+.|++++|.+. ++.+.+|..+++
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~----------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~ 321 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVG----------------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSS----------------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC
T ss_pred ccCCEEECCCCCCCccChhHccccc----------------------cccccccccceEeecCcccccccCcccccccch
Confidence 6666666666666666555554321 0011345666666666655 455666666666
Q ss_pred CcEEECCCCC
Q psy8029 445 LKELDLRHNN 454 (693)
Q Consensus 445 L~~L~L~~N~ 454 (693)
|+.+++++|+
T Consensus 322 L~~l~l~~n~ 331 (332)
T 2ft3_A 322 RLAIQFGNYK 331 (332)
T ss_dssp STTEEC----
T ss_pred hhhhhccccc
Confidence 6666666653
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=6.5e-32 Score=292.96 Aligned_cols=290 Identities=24% Similarity=0.302 Sum_probs=223.4
Q ss_pred EEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEcc
Q psy8029 250 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329 (693)
Q Consensus 250 ~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~ 329 (693)
.++.++.. ++.+|... .++++.|++++|.++.+++..|.++++|+.|++++| .++.++...|.++++|++|+++
T Consensus 58 ~v~c~~~~--l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 58 KVVCTRRG--LSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp EEECCSSC--CSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred EEEECCCC--cCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECC
Confidence 44444443 33455432 245666666666666666666666777777777777 6666666666777777777777
Q ss_pred CCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCC-CccccccccccCCCCCCcEEECCCCcCccc
Q psy8029 330 RNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSW-NQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406 (693)
Q Consensus 330 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 406 (693)
+|.++.++...|..+++|++|++++|+++.++.. ..+++|++|++++ +.+..+.+..|.++++|++|++++|.++..
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7777777776677777777777777777776653 6677788888877 566677777888999999999999999843
Q ss_pred ccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccc
Q psy8029 407 EYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRT 486 (693)
Q Consensus 407 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 486 (693)
..+..+++|++|+|++|.++++.+..|.++++|+.|++++|+++++++..+..+++|+.|+|++|+|+.++...
T Consensus 212 ------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 212 ------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp ------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred ------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 45778899999999999999999999999999999999999999999988999999999999999999888777
Q ss_pred hhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccC
Q psy8029 487 LEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVR 563 (693)
Q Consensus 487 ~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~ 563 (693)
+..+ ++++.+++++|||.|||++.|+..|++..... .....++|..| +|..+.+++
T Consensus 286 ~~~l--------------~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~-------~~~~~~~C~~P~~l~g~~l~~~~ 344 (452)
T 3zyi_A 286 FTPL--------------RYLVELHLHHNPWNCDCDILWLAWWLREYIPT-------NSTCCGRCHAPMHMRGRYLVEVD 344 (452)
T ss_dssp STTC--------------TTCCEEECCSSCEECSTTTHHHHHHHHHHC----------CCSSCBEEESTTTTTCBTTSCC
T ss_pred hccc--------------cCCCEEEccCCCcCCCCCchHHHHHHHHhCcc-------CCccCcEeCCchHhccchhhccc
Confidence 6654 45889999999999999999999999875321 12235689988 777888888
Q ss_pred CCCCcccCC
Q psy8029 564 PENLTCDTK 572 (693)
Q Consensus 564 ~~~l~c~~~ 572 (693)
...+.|..+
T Consensus 345 ~~~~~C~~P 353 (452)
T 3zyi_A 345 QASFQCSAP 353 (452)
T ss_dssp GGGCCCCCC
T ss_pred hhhhcccCc
Confidence 777888643
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.3e-31 Score=276.34 Aligned_cols=296 Identities=19% Similarity=0.280 Sum_probs=180.8
Q ss_pred CCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECc
Q psy8029 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206 (693)
Q Consensus 127 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 206 (693)
+++.++++++.++.+|... .++|++|++++|.++++++..|.++++|++|++++|+++++.+..|+.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3444444444444444322 1345555555555555555445555555555555555555544455555555555555
Q ss_pred CCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcc
Q psy8029 207 GNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286 (693)
Q Consensus 207 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~ 286 (693)
+|.++.++...+ ++|++|++++|.++.++...|..+++|++|++++|.+....+....|..+++|++|++++|.++.
T Consensus 109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 555555554332 56666666666666666666666666777776666643222444456677777777777777777
Q ss_pred cCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cC
Q psy8029 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VG 365 (693)
Q Consensus 287 ~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~ 365 (693)
++...+ ++|++|++++| .++.++...|..+++|++|++++|.++.++...|..+++|+.|++++|+++.+|.. ..
T Consensus 186 l~~~~~---~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 261 (330)
T 1xku_A 186 IPQGLP---PSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261 (330)
T ss_dssp CCSSCC---TTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred CCcccc---ccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence 765443 67777788777 67777666677788888888888888777766677778888888888887777664 66
Q ss_pred CCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCc--CChhHHhcCC
Q psy8029 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS--LFDDWISSMT 443 (693)
Q Consensus 366 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~ 443 (693)
+++|++|++++|.++++++..|.... .....+.++.|++++|.+.. +.+..|..++
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~----------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPG----------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSS----------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCCcCEEECCCCcCCccChhhcCCcc----------------------cccccccccceEeecCcccccccCcccccccc
Confidence 77777777777777777666664320 01113455566666665542 4555566666
Q ss_pred CCcEEECCCCC
Q psy8029 444 SLKELDLRHNN 454 (693)
Q Consensus 444 ~L~~L~L~~N~ 454 (693)
+++.++|++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 66666666664
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.5e-31 Score=277.82 Aligned_cols=286 Identities=22% Similarity=0.336 Sum_probs=200.4
Q ss_pred cccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEc
Q psy8029 102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181 (693)
Q Consensus 102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 181 (693)
+++.++++++ .++.+|... .++|++|++++|.++++++..|.++++|++|++++|.++++.+..|.++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5667777776 666666543 246777777777776666666677777777777777777776666777777777777
Q ss_pred cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc--CChhhhhcccCceEEEEecCCCc
Q psy8029 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM--FPKDLFAEMKYLQVIKISYHKDS 259 (693)
Q Consensus 182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~ 259 (693)
++|+++.++...+ ++|++|++++|.++.+++..|..+++|+.|++++|.++. +.+..|..+ +|++|++++|.
T Consensus 110 ~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-- 183 (332)
T 2ft3_A 110 SKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-- 183 (332)
T ss_dssp CSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB--
T ss_pred CCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC--
Confidence 7777766655432 667777777777777766666777777777777777652 445555555 77777777776
Q ss_pred ccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChh
Q psy8029 260 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 339 (693)
Q Consensus 260 ~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 339 (693)
+..+|...+ ++|++|++++|.++.++...|..+++|+.|++++| .++.++...|..+++|++|++++|.++.+|..
T Consensus 184 l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 184 LTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp CSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred CCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence 445665432 57778888888888777777778888888888888 77777776677888888888888888888775
Q ss_pred hhccCccCceEeccCCcCccccCc--c------CCCCCCeEeCCCCccc--cccccccCCCCCCcEEECCCCc
Q psy8029 340 LFESLKELYTLNLKNNQLENITSL--V------GLSGLNSLDLSWNQLE--QINLIAFDGLSSLNTVDLSHNL 402 (693)
Q Consensus 340 ~~~~~~~L~~L~Ls~n~l~~l~~~--~------~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~ 402 (693)
+..+++|+.|++++|+++.++.. . ...+|+.|++++|.+. ++.+.+|..+++|+.+++++|+
T Consensus 260 -l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 -LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 57788888888888888876643 1 1456777888877776 5666677777777777776653
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=9.1e-31 Score=271.83 Aligned_cols=286 Identities=20% Similarity=0.313 Sum_probs=156.6
Q ss_pred cccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEE
Q psy8029 76 TINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155 (693)
Q Consensus 76 ~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 155 (693)
.++.++++++ .++.++.. + .+++++|++++| .++++++..|.++++|++|++++|.++++.+..|.++++|++|
T Consensus 32 ~l~~l~~~~~--~l~~lp~~-~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDL--GLEKVPKD-L--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTS--CCCSCCCS-C--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCC--CccccCcc-C--CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 3555555555 55555422 1 145555555555 5555555555555555555555555555544445555555555
Q ss_pred EcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCc--CCCCcCCCCCCCcEEEcCCCc
Q psy8029 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI--LPSGVFSDLRKLQTFYANSNR 233 (693)
Q Consensus 156 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~ 233 (693)
++++|.++.++...+ ++|++|++++|+++++.+..|.++++|++|++++|.++. +.+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 555555555443322 455555555555555555555555555555555555542 333344444455555555444
Q ss_pred cccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCC
Q psy8029 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 313 (693)
Q Consensus 234 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~ 313 (693)
++. +|...+ ++|++|++++|.++.+++..|..+++|+.|++++| .++.++
T Consensus 183 l~~--------------------------l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 232 (330)
T 1xku_A 183 ITT--------------------------IPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVD 232 (330)
T ss_dssp CCS--------------------------CCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEEC
T ss_pred ccc--------------------------CCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeC
Confidence 444 443322 45566666666666555555566666666666666 555555
Q ss_pred hhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--------cCCCCCCeEeCCCCcccc--cc
Q psy8029 314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--------VGLSGLNSLDLSWNQLEQ--IN 383 (693)
Q Consensus 314 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--------~~l~~L~~L~Ls~n~l~~--~~ 383 (693)
...|..+++|++|++++|.++.+|.. +..+++|++|++++|+++.++.. ...+.++.|++++|.+.. +.
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~ 311 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred hhhccCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence 55556666666666666666666654 45666667777777766665543 123456666666666643 44
Q ss_pred ccccCCCCCCcEEECCCC
Q psy8029 384 LIAFDGLSSLNTVDLSHN 401 (693)
Q Consensus 384 ~~~~~~l~~L~~L~L~~n 401 (693)
+..|..+.+++.+++++|
T Consensus 312 ~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGGTTCCCGGGEEC---
T ss_pred ccccccccceeEEEeccc
Confidence 455555566666666555
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=8.5e-31 Score=269.04 Aligned_cols=285 Identities=22% Similarity=0.316 Sum_probs=225.4
Q ss_pred EEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCC--hhhhcCCCCCcEEE
Q psy8029 250 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP--STLFRDCKKLVKLE 327 (693)
Q Consensus 250 ~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~--~~~~~~~~~L~~L~ 327 (693)
.++.+++. ++.+|... .+++++|++++|.++.++..+|.++++|++|++++| .++.+. ...+..+++|++|+
T Consensus 11 ~l~c~~~~--l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 11 EIRCNSKG--LTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp EEECCSSC--CSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEE
T ss_pred EEEcCCCC--cccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEE
Confidence 44554444 44555432 246677777777777777666777777777777777 665442 22245678888888
Q ss_pred ccCCCCCCCChhhhccCccCceEeccCCcCccccC---ccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCc
Q psy8029 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENITS---LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404 (693)
Q Consensus 328 l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 404 (693)
+++|.++.++.. |..+++|++|++++|+++.++. ...+++|++|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 85 Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 888888877765 6778889999999998888764 378889999999999999988888999999999999999988
Q ss_pred ccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeec
Q psy8029 405 FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDL 484 (693)
Q Consensus 405 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 484 (693)
... .+..+..+++|++|++++|.++++.+..+..+++|+.|++++|+++++++..+..+++|+.|++++|++++..+
T Consensus 164 ~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 164 ENF---LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp GGE---ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred ccc---chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 521 36778899999999999999999988889999999999999999999998888899999999999999998877
Q ss_pred cchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccc
Q psy8029 485 RTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINS 561 (693)
Q Consensus 485 ~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~ 561 (693)
..+..++ .+++.+++++|+|.|+|+..||.+|++..... ....+.+.|..| +|..+.+
T Consensus 241 ~~~~~~~-------------~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~------~~~~~~~~C~~p~~~~g~~~~~ 301 (306)
T 2z66_A 241 QELQHFP-------------SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL------LVEVERMECATPSDKQGMPVLS 301 (306)
T ss_dssp SSCCCCC-------------TTCCEEECTTCCEECSGGGHHHHHHHHHTGGG------BSCGGGCBEEESGGGTTCBGGG
T ss_pred HHHHhhh-------------ccCCEEEccCCCeecccChHHHHHHHHhhhhh------hccccccccCCchhhCCceeee
Confidence 6665442 35889999999999999999999999864221 234568899988 6766666
Q ss_pred cC
Q psy8029 562 VR 563 (693)
Q Consensus 562 l~ 563 (693)
+.
T Consensus 302 ~~ 303 (306)
T 2z66_A 302 LN 303 (306)
T ss_dssp CC
T ss_pred ec
Confidence 53
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=6.2e-30 Score=259.67 Aligned_cols=263 Identities=25% Similarity=0.358 Sum_probs=208.3
Q ss_pred cEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccC
Q psy8029 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354 (693)
Q Consensus 275 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~ 354 (693)
+.++.+++.++.+|... .++++.|++++| .++.++...|..+++|++|++++|.++.+++..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666676666433 356777777777 77777766677777888888888877777666677778888888888
Q ss_pred Cc-CccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCC
Q psy8029 355 NQ-LENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI 431 (693)
Q Consensus 355 n~-l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 431 (693)
|+ ++.++.. ..+++|++|++++|.++++.+..|.++++|++|++++|.++.. ....+..+++|++|++++|++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc----CHhHhccCCCccEEECCCCcc
Confidence 86 7766332 6778888888888888888888888888899999998888865 345578888999999999999
Q ss_pred CcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEE
Q psy8029 432 SSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVI 511 (693)
Q Consensus 432 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~ 511 (693)
+++++..+..+++|+.|++++|+++++.+..+..+++|+.|++++|+++.+++..+..+ ++++.++
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~ 231 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL--------------RALQYLR 231 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC--------------TTCCEEE
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC--------------cccCEEe
Confidence 98888888889999999999999998888888888999999999999998776666544 4588999
Q ss_pred cCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCCc
Q psy8029 512 LNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLT 568 (693)
Q Consensus 512 l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~ 568 (693)
+++|||.|+|...|+.+|++... ...+.+.|..| +|..+.++...++.
T Consensus 232 l~~N~~~c~~~~~~~~~~l~~~~---------~~~~~~~c~~p~~l~g~~l~~l~~~~l~ 282 (285)
T 1ozn_A 232 LNDNPWVCDCRARPLWAWLQKFR---------GSSSEVPCSLPQRLAGRDLKRLAANDLQ 282 (285)
T ss_dssp CCSSCEECSGGGHHHHHHHHHCC---------SEECCCBEEESGGGTTCBGGGSCGGGSC
T ss_pred ccCCCccCCCCcHHHHHHHHhcc---------cccCccccCCchHhCCcChhhcCHHHhc
Confidence 99999999999999999987742 34467889988 67778777776664
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2e-32 Score=298.31 Aligned_cols=354 Identities=16% Similarity=0.144 Sum_probs=159.4
Q ss_pred ccccEEEccCCcCcccccccc-cCCCCCCcEEEeeCCcccccC----cccCCCCCCCcEEEcCCCCCCccChhhh-CCCC
Q psy8029 101 HFVKHILLSHNKEITGLHKDI-FKGTPQLESLNLRGNSITELY----SGVFQYVPKLQVLDLGSNDVAYMDPEIF-KNLT 174 (693)
Q Consensus 101 ~~L~~L~Ls~n~~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~ 174 (693)
++|++|++++| .+++..... +..+++|++|++++|.++... +..+..+++|++|++++|.+....+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 34555555555 554433222 444555555555555554211 1224445555555555555544322211 2233
Q ss_pred ----CCCEEEccCCCCCCCC----hhhcCCCCCCcEEECcCCCCCcCCCC-----cCCCCCCCcEEEcCCCccccCC---
Q psy8029 175 ----SLRILNLDHNQLINLT----RAIFNNVPNLRSLDISGNNISILPSG-----VFSDLRKLQTFYANSNRFQMFP--- 238 (693)
Q Consensus 175 ----~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~--- 238 (693)
+|++|++++|+++... +..+..+++|++|++++|.++..... .+...++|++|++++|.++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 4666666666555321 34455555566666665555432111 1122345666666666555432
Q ss_pred -hhhhhcccCceEEEEecCCCccc---ccCccccCCCCCccEEEcCCCCCcccC----cccccCCCCccEEEecCCCCCC
Q psy8029 239 -KDLFAEMKYLQVIKISYHKDSLK---ELPSGLFANLPLLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLT 310 (693)
Q Consensus 239 -~~~~~~~~~L~~L~l~~n~~~~~---~i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~~l~ 310 (693)
...+..+++|++|++++|.+... .+........++|++|++++|.++... ...+..+++|++|++++| .++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~ 240 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLG 240 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCC
Confidence 22234455666666665552210 011111112445666666666555421 223344555555655555 443
Q ss_pred cC-----ChhhhcCCCCCcEEEccCCCCCCCC----hhhhccCccCceEeccCCcCccccC-----c--cCCCCCCeEeC
Q psy8029 311 SL-----PSTLFRDCKKLVKLELQRNKLKYLP----ENLFESLKELYTLNLKNNQLENITS-----L--VGLSGLNSLDL 374 (693)
Q Consensus 311 ~l-----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~l~~-----~--~~l~~L~~L~L 374 (693)
.. ....+..+++|++|++++|.++... ...+..+++|++|++++|.+++... . ...++|++|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 32 1223334556666666666555421 1123445555555555555543111 0 12235555555
Q ss_pred CCCcccccc----ccccCCCCCCcEEECCCCcCcccccccCCCCcc-CCCCCcEEECCCCCCCc----CChhHHhcCCCC
Q psy8029 375 SWNQLEQIN----LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK-QCVNLETINLSYNRISS----LFDDWISSMTSL 445 (693)
Q Consensus 375 s~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L 445 (693)
++|.+++.. +..+..+++|++|++++|.++..+.......+. .+++|++|++++|.+++ ..+..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 555554432 222333445555555555444321100001111 13445555555555443 233334444555
Q ss_pred cEEECCCCCCc
Q psy8029 446 KELDLRHNNFS 456 (693)
Q Consensus 446 ~~L~L~~N~l~ 456 (693)
++|++++|+++
T Consensus 401 ~~L~l~~N~i~ 411 (461)
T 1z7x_W 401 RELDLSNNCLG 411 (461)
T ss_dssp CEEECCSSSCC
T ss_pred cEEECCCCCCC
Confidence 55555555444
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=9.3e-33 Score=300.97 Aligned_cols=384 Identities=16% Similarity=0.115 Sum_probs=289.6
Q ss_pred CCCcEEEeeCCcccccCcc-cCCCCCCCcEEEcCCCCCCcc----ChhhhCCCCCCCEEEccCCCCCCCChhh-cCCCC-
Q psy8029 126 PQLESLNLRGNSITELYSG-VFQYVPKLQVLDLGSNDVAYM----DPEIFKNLTSLRILNLDHNQLINLTRAI-FNNVP- 198 (693)
Q Consensus 126 ~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~- 198 (693)
++|++|++++|+++..+.. .|..+++|++|++++|.+... .+..+..+++|++|++++|.+++..... +..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5789999999999875433 377899999999999998853 2456788899999999999987643322 23344
Q ss_pred ---CCcEEECcCCCCCcCC----CCcCCCCCCCcEEEcCCCccccCChhhh-----hcccCceEEEEecCCCcccccC--
Q psy8029 199 ---NLRSLDISGNNISILP----SGVFSDLRKLQTFYANSNRFQMFPKDLF-----AEMKYLQVIKISYHKDSLKELP-- 264 (693)
Q Consensus 199 ---~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~i~-- 264 (693)
+|++|++++|.++... +..+..+++|++|++++|.++......+ ...++|++|++++|.+......
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 7999999999998532 5567889999999999999875433322 2356899999999984321110
Q ss_pred ccccCCCCCccEEEcCCCCCcccCccccc-----CCCCccEEEecCCCCCCcCC----hhhhcCCCCCcEEEccCCCCCC
Q psy8029 265 SGLFANLPLLNTVILGESSIAELPSDLFW-----NSTNITNIVLTGHKKLTSLP----STLFRDCKKLVKLELQRNKLKY 335 (693)
Q Consensus 265 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~~l~~l~----~~~~~~~~~L~~L~l~~n~l~~ 335 (693)
...+..+++|++|++++|.+.......+. ..++|+.|++++| .++..+ ...+..+++|++|++++|.++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 23356789999999999998764333332 3669999999999 777643 3345678999999999998875
Q ss_pred CC-----hhhhccCccCceEeccCCcCcc-----ccCc-cCCCCCCeEeCCCCccccccccccC-----CCCCCcEEECC
Q psy8029 336 LP-----ENLFESLKELYTLNLKNNQLEN-----ITSL-VGLSGLNSLDLSWNQLEQINLIAFD-----GLSSLNTVDLS 399 (693)
Q Consensus 336 ~~-----~~~~~~~~~L~~L~Ls~n~l~~-----l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~ 399 (693)
.. ...+..+++|++|++++|+++. ++.. ..+++|++|++++|.+++.....+. ..++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 32 3344468999999999999987 3433 5689999999999999866554443 34799999999
Q ss_pred CCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhc-----CCCCcEEECCCCCCcc----CCCcccccCCCcc
Q psy8029 400 HNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISS-----MTSLKELDLRHNNFSF----IPDQLDSIVSNKL 470 (693)
Q Consensus 400 ~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~ 470 (693)
+|.++.......+..+..+++|++|++++|.+++..+..+.. .++|+.|++++|++++ ..+..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 999986542223445677899999999999999876665553 7899999999999985 3344567789999
Q ss_pred EEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccc
Q psy8029 471 TLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIAC 519 (693)
Q Consensus 471 ~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 519 (693)
.|++++|+++......+....... ..+++.+.+.++.+.+
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~---------~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQP---------GCLLEQLVLYDIYWSE 441 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTST---------TCCCCEEECTTCCCCH
T ss_pred EEECCCCCCCHHHHHHHHHHhccC---------CcchhheeecccccCH
Confidence 999999999987665554322110 1358899999988764
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=265.56 Aligned_cols=307 Identities=20% Similarity=0.316 Sum_probs=155.1
Q ss_pred CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEEC
Q psy8029 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205 (693)
Q Consensus 126 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 205 (693)
+.....+.+++.++.+|...+ ++|++|++++|.++++++..|.++++|++|++++|+++++.+..|.++++|++|++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 333445555555555554322 34555555555555554444555555555555555555444444444444444444
Q ss_pred cCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCC-CC
Q psy8029 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SI 284 (693)
Q Consensus 206 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n-~l 284 (693)
++|.++.+++..|.++++|++|++++|.++.++.. ..|..+++|++|++++| .+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-------------------------~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET-------------------------SLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS-------------------------CSCTTCTTCCEEEEEESSSC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch-------------------------hhhccCCCCcEEECCCCccc
Confidence 44444444443344444444444444444433330 22333444444444443 23
Q ss_pred cccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCcc
Q psy8029 285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364 (693)
Q Consensus 285 ~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~ 364 (693)
..+++..|.++++|++|++++| .++.+++..|..+++|++|++++|.++.++...+..+++|+.|++++|++++++
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--- 238 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH--- 238 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC---
T ss_pred cccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc---
Confidence 3333333444444444444444 444443333445555555555555555555444444445555555444443322
Q ss_pred CCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCc----CChhHHh
Q psy8029 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS----LFDDWIS 440 (693)
Q Consensus 365 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~ 440 (693)
...+.. ...++.++.++++++.+++ ..|.++.
T Consensus 239 -------------------~~~l~~-------------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 239 -------------------FSELST-------------------------GETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp -------------------CC-------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred -------------------cccccc-------------------------ccccchhhccccccccccCcchhhhHHHHh
Confidence 111110 0112334444444444443 1345677
Q ss_pred cCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCccccc
Q psy8029 441 SMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACN 520 (693)
Q Consensus 441 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~ 520 (693)
.+++|+.|++++|+++.++...+..+ ++++.+++++|||.|+
T Consensus 275 ~l~~L~~L~Ls~N~l~~i~~~~~~~l--------------------------------------~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 275 QISGLLELEFSRNQLKSVPDGIFDRL--------------------------------------TSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTC--------------------------------------TTCCEEECCSSCBCCC
T ss_pred cccCCCEEECCCCCCCccCHHHHhcC--------------------------------------CCCCEEEeeCCCccCc
Confidence 88888888888888887766543333 3366888999999999
Q ss_pred CC-cHHHHHHHhcccccceeeeeeeccCceeecCC
Q psy8029 521 CS-NYDLIRFVSKKMTKTVYQMLELVTDNLECFGN 554 (693)
Q Consensus 521 C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 554 (693)
|+ +.|+..|....... + ...+.|..|
T Consensus 317 ~~~l~~l~~~~~~~~~~-~-------~~~~~C~~p 343 (353)
T 2z80_A 317 CPRIDYLSRWLNKNSQK-E-------QGSAKCSGS 343 (353)
T ss_dssp HHHHHHHHHHHHHTTTT-E-------ESCCBBTTT
T ss_pred CCCcHHHHHHHHhcccc-C-------CCCcccCCC
Confidence 96 77888998774221 1 246678765
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=256.79 Aligned_cols=273 Identities=18% Similarity=0.230 Sum_probs=149.9
Q ss_pred EEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcC
Q psy8029 79 TLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG 158 (693)
Q Consensus 79 ~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 158 (693)
..+.+++ .++.++.... ++|++|++++| .++.++...|.++++|++|++++|.++++++..|.++++|++|+++
T Consensus 35 ~c~~~~~--~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 35 ICKGSSG--SLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp EEECCST--TCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EeeCCCC--Cccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 3455555 5555553222 35666666666 6666665556666666666666666666555555666666666666
Q ss_pred CCCCCccChhhhCCCCCCCEEEccCCCCCCCCh-hhcCCCCCCcEEECcCC-CCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029 159 SNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGN-NISILPSGVFSDLRKLQTFYANSNRFQM 236 (693)
Q Consensus 159 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 236 (693)
+|.++++++..|.++++|++|++++|+++.++. ..|..+++|++|++++| .++.+++..|.++++|++|++++|.++.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 666666665555666666666666666665554 44555666666666665 3555555555555556666666555555
Q ss_pred CChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhh
Q psy8029 237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 316 (693)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~ 316 (693)
+.+..|..+++|++|++++|. +..++...+..+++|+.|++++|.+++++...+..
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------- 244 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQ--HILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------------- 244 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSC--STTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------
T ss_pred cCHHHHhccccCCeecCCCCc--cccchhhhhhhcccccEEECCCCcccccccccccc----------------------
Confidence 544445555555555555555 33444444444555555555555554433221110
Q ss_pred hcCCCCCcEEEccCCCCCC-----CChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccccc
Q psy8029 317 FRDCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQI 382 (693)
Q Consensus 317 ~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~ 382 (693)
......++.++++++.++. +|. .+..+++|+.|++++|+++.+|.. ..+++|++|++++|.+.+.
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccchhhccccccccccCcchhhhHH-HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 1123445555555555442 222 245566666666666666665553 4566666666666666543
No 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=2.9e-27 Score=239.85 Aligned_cols=217 Identities=26% Similarity=0.292 Sum_probs=162.0
Q ss_pred cCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeE
Q psy8029 293 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSL 372 (693)
Q Consensus 293 ~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L 372 (693)
..+++++.++++++ .++.+|..++ +++++|++++|.++.++...|..+++|+.|++++|.++.++....+++|++|
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred cccCCccEEECCCC-CCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 34455555555555 5555554432 4566667777766666666666677777777777777766666667777777
Q ss_pred eCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCC
Q psy8029 373 DLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452 (693)
Q Consensus 373 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 452 (693)
++++|.++.++. .+..+++|++|++++|+++.. .+..|..+++|++|++++|+++++++..|..+++|+.|+|++
T Consensus 83 ~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 83 DLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp ECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCC----CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ECCCCcCCcCch-hhccCCCCCEEECCCCcCccc----CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 777777775543 567778888888888888765 245677888888888888888888888788888888888888
Q ss_pred CCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhc
Q psy8029 453 NNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532 (693)
Q Consensus 453 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~ 532 (693)
|+|+++++..+..+++|+.|++++|+|+.++...+.. ..++.+++++|||.|+|++.|+.+|++.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~---------------~~L~~l~L~~Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS---------------HLLPFAFLHGNPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------CCCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc---------------ccCCeEEeCCCCccCcCccHHHHHHHHh
Confidence 8888888887788888888899888888776544322 3478999999999999999999999987
Q ss_pred c
Q psy8029 533 K 533 (693)
Q Consensus 533 ~ 533 (693)
.
T Consensus 223 ~ 223 (290)
T 1p9a_G 223 N 223 (290)
T ss_dssp T
T ss_pred C
Confidence 5
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=256.17 Aligned_cols=245 Identities=21% Similarity=0.392 Sum_probs=130.4
Q ss_pred cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccC
Q psy8029 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183 (693)
Q Consensus 104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 183 (693)
+.++.++. +++.+|.... ++++.|+|++|.++.++...|.++++|++|+|++|.+..+.+..|.++++|++|+|++
T Consensus 46 ~~v~c~~~-~l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRK-NLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSC-CCSSCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCC-CcCcCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 34444444 4555544321 3455555555555555544455555555555555555555555555555555555555
Q ss_pred CCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCC-CccccCChhhhhcccCceEEEEecCCCcccc
Q psy8029 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS-NRFQMFPKDLFAEMKYLQVIKISYHKDSLKE 262 (693)
Q Consensus 184 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 262 (693)
|+++.+++..|..+++|++|++++|.++.++...|..+++|++|++++ +.+..++...|.++++|++|++++|. +..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~~ 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN--LRE 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC--CSS
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc--Ccc
Confidence 555555554455555555555555555555555555555555555554 23334444444445555555555554 334
Q ss_pred cCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhc
Q psy8029 263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE 342 (693)
Q Consensus 263 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 342 (693)
+|. +..+++|++|++++|.++.+++..|.++++|+.|++++| .++.++...|.++++|++|++++|+++.++...|.
T Consensus 200 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 200 IPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp CCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred ccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 432 445555555666555555555555555555555555555 55555555555566666666666666655555555
Q ss_pred cCccCceEeccCCcC
Q psy8029 343 SLKELYTLNLKNNQL 357 (693)
Q Consensus 343 ~~~~L~~L~Ls~n~l 357 (693)
.+++|+.|++++|.+
T Consensus 277 ~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 277 PLHHLERIHLHHNPW 291 (440)
T ss_dssp SCTTCCEEECCSSCE
T ss_pred cccCCCEEEcCCCCc
Confidence 555555555555554
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.6e-27 Score=255.68 Aligned_cols=245 Identities=22% Similarity=0.391 Sum_probs=126.6
Q ss_pred cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccC
Q psy8029 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183 (693)
Q Consensus 104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 183 (693)
+.++.++. +++.+|.... +++++|+|++|.++.+++..|.++++|++|+|++|.+.++.+..|.++++|++|+|++
T Consensus 57 ~~v~c~~~-~l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSS-CCSSCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCC-CcCccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34445444 4555544321 3455555555555555444455555555555555555555555555555555555555
Q ss_pred CCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCC-CccccCChhhhhcccCceEEEEecCCCcccc
Q psy8029 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS-NRFQMFPKDLFAEMKYLQVIKISYHKDSLKE 262 (693)
Q Consensus 184 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 262 (693)
|+++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++ +.+..++...|..+++|++|++++|. +..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~~ 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN--IKD 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC--CSS
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc--ccc
Confidence 555555555455555555555555555555555555555555555554 33334444444444445555554444 223
Q ss_pred cCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhc
Q psy8029 263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE 342 (693)
Q Consensus 263 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 342 (693)
++. +..+++|++|++++|.++++++..|.++++|+.|++++| .+..++...|.++++|++|++++|.++.++...|.
T Consensus 211 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 211 MPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp CCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred ccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 332 344555555555555555555555555555555555555 55555444455555555555555555555555555
Q ss_pred cCccCceEeccCCcC
Q psy8029 343 SLKELYTLNLKNNQL 357 (693)
Q Consensus 343 ~~~~L~~L~Ls~n~l 357 (693)
.+++|+.|++++|.+
T Consensus 288 ~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 288 PLRYLVELHLHHNPW 302 (452)
T ss_dssp TCTTCCEEECCSSCE
T ss_pred cccCCCEEEccCCCc
Confidence 555555555555543
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=2.4e-26 Score=231.01 Aligned_cols=240 Identities=27% Similarity=0.384 Sum_probs=156.0
Q ss_pred cEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCC
Q psy8029 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSW 376 (693)
Q Consensus 299 ~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~ 376 (693)
+.++++++ .++.+|..+ .+++++|++++|.++.++...|..+++|++|++++|+++.++.. ..+++|++|++++
T Consensus 19 ~~l~~~~~-~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 19 NSVDCSSK-KLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TEEECTTS-CCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CEEEccCC-CCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 34444444 444444322 13455555555555555544455555555555555555554443 4455666666666
Q ss_pred CccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCc
Q psy8029 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456 (693)
Q Consensus 377 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 456 (693)
|.++++.+..|..+++|++|++++|.++.. .+..|..+++|++|++++|.++++++..|..+++|+.|++++|+++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSL----PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCee----CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 666666666666777777777777777654 2445677777888888888877777777777888888888888888
Q ss_pred cCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHhcccc
Q psy8029 457 FIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVSKKMT 535 (693)
Q Consensus 457 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~~~~~ 535 (693)
++++..+..+++|+.|++++|+++.++...+..+ ++++.+++++|||.|+|. ..|+.+|+.....
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~ 236 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL--------------EKLKMLQLQENPWDCTCNGIIYMAKWLKKKAD 236 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--------------TTCCEEECCSSCBCCSSSSSHHHHHHHHHHHH
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccc--------------cCCCEEEecCCCeeCCCccHHHHHHHHHhhcc
Confidence 8877777777888888888888887766655544 458899999999999997 7899999876432
Q ss_pred cceeeeeeeccCceeecCCCCccccccCCCC
Q psy8029 536 KTVYQMLELVTDNLECFGNAGVGINSVRPEN 566 (693)
Q Consensus 536 ~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~ 566 (693)
..+ .......|.. .|..+.++...+
T Consensus 237 ~~~-----~~~~~~~C~~-~~~~~~~~~~~~ 261 (270)
T 2o6q_A 237 EGL-----GGVDTAGCEK-GGKAVLEITEKD 261 (270)
T ss_dssp TTC-----SSTTCCBBSS-SCSBGGGCCTTT
T ss_pred ccc-----cCccccccCC-CCeEeEEecchh
Confidence 211 1223456754 355566665544
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.1e-27 Score=243.71 Aligned_cols=229 Identities=22% Similarity=0.335 Sum_probs=104.5
Q ss_pred CCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccC--hhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEE
Q psy8029 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD--PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD 204 (693)
Q Consensus 127 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 204 (693)
+|++|++++|.++.++..+|.++++|++|++++|.++.+. +..+..+++|++|++++|.++.++.. +..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEE
Confidence 3444444444444444443444444444444444443221 12223344444444444444433222 33444444444
Q ss_pred CcCCCCCcCCC-CcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCC
Q psy8029 205 ISGNNISILPS-GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283 (693)
Q Consensus 205 L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~ 283 (693)
+++|.++.++. ..+..+++|++|++++|.+..+.+..|..+++|++|++++|.+....++. .|..+++|++|++++|.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh-HHhhCcCCCEEECCCCC
Confidence 44444444433 33444444444444444444444333444444444444444421111222 24555555555555555
Q ss_pred CcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccC-ccCceEeccCCcCc
Q psy8029 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL-KELYTLNLKNNQLE 358 (693)
Q Consensus 284 l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~ 358 (693)
++++++..|..+++|+.|++++| .++.++...|..+++|++|++++|.++..++..+..+ ++|+.|++++|+++
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 55554444555555555555555 5555554445555555555555555554444334444 25555555555544
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.7e-27 Score=239.19 Aligned_cols=224 Identities=23% Similarity=0.379 Sum_probs=163.2
Q ss_pred cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccC
Q psy8029 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183 (693)
Q Consensus 104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 183 (693)
++++.+++ +++.+|... .++|++|++++|.++.+++..|..+++|++|++++|.++++.+..|..+++|++|++++
T Consensus 14 ~~~~c~~~-~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSS-CCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcC-CcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 67888888 888887643 46788888888888888877788888888888888888888777788888888888888
Q ss_pred CC-CCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccc
Q psy8029 184 NQ-LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKE 262 (693)
Q Consensus 184 n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 262 (693)
|+ ++.+.+..|..+++|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|++|++++|. +..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~ 167 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISS 167 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc--ccc
Confidence 86 777777778888888888888888888877777788888888888888777776666677777777777776 445
Q ss_pred cCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC
Q psy8029 263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334 (693)
Q Consensus 263 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~ 334 (693)
++...|..+++|+.|++++|.+.++.+..|..+++|+.|++++| .++.++...|..+++|++|++++|.+.
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 66555666666666666666666655555555555555555555 555555555555555555555555543
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=2e-26 Score=232.56 Aligned_cols=235 Identities=25% Similarity=0.316 Sum_probs=186.2
Q ss_pred EEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCc
Q psy8029 277 VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356 (693)
Q Consensus 277 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 356 (693)
++..+..+..+|... .+++++|++++| .++.++...|.++++|++|++++|.++.++...|..+++|++|++++|+
T Consensus 12 ~~c~~~~l~~ip~~l---~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFYKIPDNL---PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCSSCCSSS---CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCccccCCCC---CCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 444455555565433 246777777777 7777776667777888888888888877777677778888888888888
Q ss_pred CccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcC
Q psy8029 357 LENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434 (693)
Q Consensus 357 l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 434 (693)
++.++.. ..+++|++|++++|.+.++.+..+..+++|++|++++|.++... .+..+..+++|++|++++|+++++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcC
Confidence 8776533 77788888888888888888778888999999999999988542 256788899999999999999998
Q ss_pred ChhHHhcCCCCc----EEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEE
Q psy8029 435 FDDWISSMTSLK----ELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIV 510 (693)
Q Consensus 435 ~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l 510 (693)
++..+..+++|+ .|++++|+++++++..+.. .+|+.|++++|+++.++...+..+ ++++.+
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l--------------~~L~~L 229 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRL--------------TSLQKI 229 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTC--------------CSCCEE
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccc--------------ccccEE
Confidence 888788777777 8999999999998876654 479999999999998877666554 458899
Q ss_pred EcCCCcccccCC-cHHHHHHHhcc
Q psy8029 511 ILNDNPIACNCS-NYDLIRFVSKK 533 (693)
Q Consensus 511 ~l~~Np~~c~C~-~~~~~~~~~~~ 533 (693)
++++|||.|+|+ +.|+..|+...
T Consensus 230 ~l~~N~~~c~c~~l~~l~~~~~~~ 253 (276)
T 2z62_A 230 WLHTNPWDCSCPRIDYLSRWLNKN 253 (276)
T ss_dssp ECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred EccCCcccccCCchHHHHHHHHhc
Confidence 999999999996 77888998764
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.2e-25 Score=249.88 Aligned_cols=265 Identities=23% Similarity=0.235 Sum_probs=140.4
Q ss_pred cccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEc
Q psy8029 102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181 (693)
Q Consensus 102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 181 (693)
++++|++++| .++.+|...+ ++|++|++++|.++.++. .+++|++|++++|.++.++. .+++|++|++
T Consensus 41 ~l~~L~ls~n-~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSS-CCSCCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCC-CcCccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 4677777777 7777766433 567777777777776665 35677777777777766654 4566777777
Q ss_pred cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK 261 (693)
Q Consensus 182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 261 (693)
++|++++++. .+++|++|++++|.++.++.. +++|++|++++|.++.++. .+++|+.|++++|.
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~---- 172 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQ---- 172 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC----
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCC----
Confidence 7776666554 346666666666666665542 3566666666666555442 12344444444444
Q ss_pred ccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhh
Q psy8029 262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 341 (693)
Q Consensus 262 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 341 (693)
++.++ ..+++|+.|++++| .++.+|.. .++|+.|++++|.++.++.
T Consensus 173 ----------------------l~~l~----~~~~~L~~L~Ls~N-~l~~l~~~----~~~L~~L~L~~N~l~~l~~--- 218 (622)
T 3g06_A 173 ----------------------LTSLP----MLPSGLQELSVSDN-QLASLPTL----PSELYKLWAYNNRLTSLPA--- 218 (622)
T ss_dssp ----------------------CSCCC----CCCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSSCCC---
T ss_pred ----------------------CCCCc----ccCCCCcEEECCCC-CCCCCCCc----cchhhEEECcCCcccccCC---
Confidence 33333 12233444444444 33333321 2344445555554444442
Q ss_pred ccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCC
Q psy8029 342 ESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNL 421 (693)
Q Consensus 342 ~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L 421 (693)
.+++|+.|++++|+++++| ..+++|++|++++|.++.++. .+++|+.|++++|.++.. +..+..+++|
T Consensus 219 -~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-----p~~l~~l~~L 286 (622)
T 3g06_A 219 -LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-----PESLIHLSSE 286 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-----CGGGGGSCTT
T ss_pred -CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-----CHHHhhcccc
Confidence 1244455555555444444 233445555555555444333 234455555555554422 3334445555
Q ss_pred cEEECCCCCCCcCChhHHh
Q psy8029 422 ETINLSYNRISSLFDDWIS 440 (693)
Q Consensus 422 ~~L~Ls~n~l~~~~~~~~~ 440 (693)
+.|+|++|.+++..+..+.
T Consensus 287 ~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CEEECCSCCCCHHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHHH
Confidence 5555555555554444433
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=2.4e-27 Score=243.64 Aligned_cols=229 Identities=19% Similarity=0.232 Sum_probs=125.7
Q ss_pred ccCCCcccccEEEccC-CcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCC
Q psy8029 95 PYFDGLHFVKHILLSH-NKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL 173 (693)
Q Consensus 95 ~~~~~l~~L~~L~Ls~-n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 173 (693)
..|+++++|++|++++ | .+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+
T Consensus 70 ~~l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp GGGGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred hhHhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 4566666666666663 5 5655444456666666666666666664444445666666666666666665555556666
Q ss_pred CCCCEEEccCCCCCCCChhhcCCCC-CCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEE
Q psy8029 174 TSLRILNLDHNQLINLTRAIFNNVP-NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK 252 (693)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 252 (693)
++|++|++++|++++..+..+..++ +|++|++++|.+++..+..+..++ |++|++++|.++...+..|..+++|++|+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 6666666666666644444455555 666666666666544444455554 66666666555544444444444555555
Q ss_pred EecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC-cCChhhhcCCCCCcEEEccCC
Q psy8029 253 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDCKKLVKLELQRN 331 (693)
Q Consensus 253 l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~-~l~~~~~~~~~~L~~L~l~~n 331 (693)
+++|. ++..++. +..+++|++|++++| .+. .+|. .|..+++|++|++++|
T Consensus 228 L~~N~--------------------------l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~-~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 228 LAKNS--------------------------LAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQ-GLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CCSSE--------------------------ECCBGGG-CCCCTTCCEEECCSS-CCEECCCG-GGGGCTTCCEEECCSS
T ss_pred CCCCc--------------------------eeeecCc-ccccCCCCEEECcCC-cccCcCCh-HHhcCcCCCEEECcCC
Confidence 54444 2221111 223344444444444 333 2222 2345556666666666
Q ss_pred CCC-CCChhhhccCccCceEeccCCc
Q psy8029 332 KLK-YLPENLFESLKELYTLNLKNNQ 356 (693)
Q Consensus 332 ~l~-~~~~~~~~~~~~L~~L~Ls~n~ 356 (693)
.++ .+|.. ..+++|+.+++++|+
T Consensus 279 ~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 279 NLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred cccccCCCC--ccccccChHHhcCCC
Confidence 555 34432 456666666666665
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.4e-25 Score=247.46 Aligned_cols=265 Identities=26% Similarity=0.341 Sum_probs=200.3
Q ss_pred ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029 75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154 (693)
Q Consensus 75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 154 (693)
..++.|+++++ .++.++... . ++|++|++++| .++.++. .+++|++|+|++|.++.++. .+++|++
T Consensus 40 ~~l~~L~ls~n--~L~~lp~~l-~--~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGES--GLTTLPDCL-P--AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSS--CCSCCCSCC-C--TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCE
T ss_pred CCCcEEEecCC--CcCccChhh-C--CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCE
Confidence 35899999999 999998533 3 79999999999 9999887 47899999999999998886 5799999
Q ss_pred EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcc
Q psy8029 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234 (693)
Q Consensus 155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 234 (693)
|++++|.++.++. .+++|++|++++|+++.++. .+++|++|++++|.++.++. .+++|+.|++++|.+
T Consensus 106 L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 106 LSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQL 173 (622)
T ss_dssp EEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred EECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCC
Confidence 9999999999875 57899999999999998875 35899999999999998875 357899999999999
Q ss_pred ccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCCh
Q psy8029 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 314 (693)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~ 314 (693)
+.++ ..+++|+.|++++|. +..+|.. .++|+.|++++|.++.++. ..++|+.|++++| .++.+|
T Consensus 174 ~~l~----~~~~~L~~L~Ls~N~--l~~l~~~----~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N-~L~~lp- 237 (622)
T 3g06_A 174 TSLP----MLPSGLQELSVSDNQ--LASLPTL----PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGN-RLTSLP- 237 (622)
T ss_dssp SCCC----CCCTTCCEEECCSSC--CSCCCCC----CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSS-CCSCCC-
T ss_pred CCCc----ccCCCCcEEECCCCC--CCCCCCc----cchhhEEECcCCcccccCC----CCCCCCEEEccCC-ccCcCC-
Confidence 9987 346888889988887 4455542 4677777777777776663 2356666666666 666655
Q ss_pred hhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccC
Q psy8029 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFD 388 (693)
Q Consensus 315 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~ 388 (693)
..+++|++|++++|.++.+|. .+++|+.|++++|+++.+|.. ..+++|+.|+|++|.+++..+..+.
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 234566666666666666554 345566666666666655543 5555666666666666555544443
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.5e-28 Score=274.71 Aligned_cols=400 Identities=15% Similarity=0.130 Sum_probs=200.5
Q ss_pred CCCccEEEEEcCCCCCc--------------cHHHHhhhcCcccccEEEeecCCCCccCCCCccCCC-ccc-ccEEEccC
Q psy8029 47 LGPFNAVTFTFCPLPDE--------------NFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDG-LHF-VKHILLSH 110 (693)
Q Consensus 47 ~~~l~~L~l~~c~l~~~--------------~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~-l~~-L~~L~Ls~ 110 (693)
++++++|++++|+.... .+..+.. .++.|++|+++++ .++......+.. +++ |++|++++
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISN--NLRQLKSVHFRRM--IVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH--HCTTCCEEEEESC--BCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHh--hCCCCCeEEeecc--EecHHHHHHHHHhccccCcEEECcC
Confidence 46678888877753110 0111111 3566777777776 665433333443 333 77777777
Q ss_pred CcCccccc-ccccCCCCCCcEEEeeCCcccccCc----ccCCCCCCCcEEEcCCCCCCccCh----hhhCCCCCCCEEEc
Q psy8029 111 NKEITGLH-KDIFKGTPQLESLNLRGNSITELYS----GVFQYVPKLQVLDLGSNDVAYMDP----EIFKNLTSLRILNL 181 (693)
Q Consensus 111 n~~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L 181 (693)
|..++... .....++++|++|+|++|.+++... ..+..+++|++|++++|.++++.. ..+.++++|++|++
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence 73232211 1122356777777777776654321 123456777777777777764332 23346677777777
Q ss_pred cCCCCCCCChhhcCCCCCCcEEECcCCCCC---cCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCC
Q psy8029 182 DHNQLINLTRAIFNNVPNLRSLDISGNNIS---ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD 258 (693)
Q Consensus 182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 258 (693)
++|.+.+++ ..+..+++|++|+++..... ......+..+++|+.|+++++....++. .+..+++|++|++++|.+
T Consensus 228 ~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 228 GDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp SSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCC
T ss_pred cCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCCcC
Confidence 777766644 44666777777777653221 1111234556677777776654333332 355666777777776663
Q ss_pred cccccCccccCCCCCccEEEcCCCCCcc-cCcccccCCCCccEEEecC----------CCCCCcCC-hhhhcCCCCCcEE
Q psy8029 259 SLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWNSTNITNIVLTG----------HKKLTSLP-STLFRDCKKLVKL 326 (693)
Q Consensus 259 ~~~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~----------n~~l~~l~-~~~~~~~~~L~~L 326 (693)
....+. ..+..+++|+.|+++ +.+.. ....++..+++|++|++++ +..++... ..++..+++|++|
T Consensus 306 ~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 306 ETEDHC-TLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CHHHHH-HHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred CHHHHH-HHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 221221 224566667777666 32222 1122234456666666663 32333221 1122345666666
Q ss_pred EccCCCCCCCChhhhc-cCccCceEecc----CCcCccccC------c-cCCCCCCeEeCCCCc--cccccccccC-CCC
Q psy8029 327 ELQRNKLKYLPENLFE-SLKELYTLNLK----NNQLENITS------L-VGLSGLNSLDLSWNQ--LEQINLIAFD-GLS 391 (693)
Q Consensus 327 ~l~~n~l~~~~~~~~~-~~~~L~~L~Ls----~n~l~~l~~------~-~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~ 391 (693)
+++.+.++......+. .+++|+.|+++ .|.+++.|. . .++++|++|++++|. +++.....+. .++
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 6655555432222222 25566666664 344444321 1 335555555554322 3332222222 244
Q ss_pred CCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCC-hhHHhcCCCCcEEECCCCCCcc
Q psy8029 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF-DDWISSMTSLKELDLRHNNFSF 457 (693)
Q Consensus 392 ~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 457 (693)
+|++|++++|.+++.. ....+..+++|++|++++|.+++.. +..+..+++|+.|++++|+++.
T Consensus 464 ~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEG---LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TCCEEEECSCCSSHHH---HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred cceEeeccCCCCCHHH---HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 5555555555544321 0112234455555555555544321 2222344555555555555443
No 64
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=7e-27 Score=240.13 Aligned_cols=251 Identities=22% Similarity=0.234 Sum_probs=174.5
Q ss_pred ccccEEEccCCcCccc--ccccccCCCCCCcEEEeeC-CcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCC
Q psy8029 101 HFVKHILLSHNKEITG--LHKDIFKGTPQLESLNLRG-NSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLR 177 (693)
Q Consensus 101 ~~L~~L~Ls~n~~i~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 177 (693)
.++++|++++| .+++ ..+..|.++++|++|++++ |.+.+..+..|+++++|++|++++|.+++..+..|.++++|+
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 35666666666 6664 3334566677777777773 666654344466667777777777666655555566666666
Q ss_pred EEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCC-CCcEEEcCCCccccCChhhhhcccCceEEEEecC
Q psy8029 178 ILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR-KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256 (693)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 256 (693)
+|++++|++++..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|.++..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~------------------- 189 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK------------------- 189 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-------------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-------------------
Confidence 666666666655555566666666666666666643344444454 555555555554422
Q ss_pred CCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCC
Q psy8029 257 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL 336 (693)
Q Consensus 257 ~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~ 336 (693)
+|. .|..+. |++|++++|.+++..+..|..+++|+.|++++| .++..++. +..+++|++|++++|.++..
T Consensus 190 ------~~~-~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 190 ------IPP-TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGK-VGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp ------CCG-GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGG-CCCCTTCCEEECCSSCCEEC
T ss_pred ------CCh-HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCc-ccccCCCCEEECcCCcccCc
Confidence 222 244444 777888888777777777888999999999999 77655554 67899999999999999844
Q ss_pred ChhhhccCccCceEeccCCcCcc-ccCccCCCCCCeEeCCCCc-ccc
Q psy8029 337 PENLFESLKELYTLNLKNNQLEN-ITSLVGLSGLNSLDLSWNQ-LEQ 381 (693)
Q Consensus 337 ~~~~~~~~~~L~~L~Ls~n~l~~-l~~~~~l~~L~~L~Ls~n~-l~~ 381 (693)
.+..|..+++|+.|++++|++++ +|....+++|+.+++++|. +.+
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 44457899999999999999995 7777889999999999998 444
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.8e-27 Score=243.77 Aligned_cols=267 Identities=19% Similarity=0.221 Sum_probs=199.1
Q ss_pred CCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcC
Q psy8029 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230 (693)
Q Consensus 151 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 230 (693)
.++..+++.+.+.......+..+++|++|++++|+++++.+..|..+++|++|++++|.++++++ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34556777777777777777888899999999999999888888999999999999998887665 7778888888888
Q ss_pred CCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC
Q psy8029 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310 (693)
Q Consensus 231 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~ 310 (693)
+|.++.++. .++|++|++++|. ++.++.. .+++|+.|++++| .++
T Consensus 89 ~n~l~~l~~-----~~~L~~L~l~~n~--------------------------l~~~~~~---~~~~L~~L~l~~N-~l~ 133 (317)
T 3o53_A 89 NNYVQELLV-----GPSIETLHAANNN--------------------------ISRVSCS---RGQGKKNIYLANN-KIT 133 (317)
T ss_dssp SSEEEEEEE-----CTTCCEEECCSSC--------------------------CSEEEEC---CCSSCEEEECCSS-CCC
T ss_pred CCccccccC-----CCCcCEEECCCCc--------------------------cCCcCcc---ccCCCCEEECCCC-CCC
Confidence 887765442 2455555555554 4333322 2344566666666 555
Q ss_pred cCChhhhcCCCCCcEEEccCCCCCCCChhhh-ccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCC
Q psy8029 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLF-ESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDG 389 (693)
Q Consensus 311 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 389 (693)
.+++..|..+++|++|++++|.++.++...+ ..+++|++|++++|+++.++....+++|++|++++|.++++++. |..
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~ 212 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQS 212 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGG
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhh-hcc
Confidence 5555555667777777777777776554444 46788888888888888877666788899999999999888765 778
Q ss_pred CCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC-cCChhHHhcCCCCcEEECCCC-CCccCCC
Q psy8029 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS-SLFDDWISSMTSLKELDLRHN-NFSFIPD 460 (693)
Q Consensus 390 l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 460 (693)
+++|++|++++|.++.. +..+..+++|+.|++++|.++ +..+.++..+++|+.|+++++ .+++..+
T Consensus 213 l~~L~~L~L~~N~l~~l-----~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 213 AAGVTWISLRNNKLVLI-----EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp GTTCSEEECTTSCCCEE-----CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cCcccEEECcCCcccch-----hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 88999999999998854 556778889999999999998 677788888888888888844 4444443
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=3.1e-28 Score=274.02 Aligned_cols=374 Identities=18% Similarity=0.159 Sum_probs=170.8
Q ss_pred CcccccEEEccCCcCcccccccccCC-CCC-CcEEEeeCCc-cccc-CcccCCCCCCCcEEEcCCCCCCccC----hhhh
Q psy8029 99 GLHFVKHILLSHNKEITGLHKDIFKG-TPQ-LESLNLRGNS-ITEL-YSGVFQYVPKLQVLDLGSNDVAYMD----PEIF 170 (693)
Q Consensus 99 ~l~~L~~L~Ls~n~~i~~~~~~~~~~-l~~-L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~ 170 (693)
.+++|++|+|++| .+++.....+.. ++. |++|++++|. ++.. ......++++|++|+|++|.+++.. +..+
T Consensus 110 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 4556666666666 555443333333 222 6666666554 1110 0111234566666666666544332 1223
Q ss_pred CCCCCCCEEEccCCCCCCCCh----hhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccc---cCChhhhh
Q psy8029 171 KNLTSLRILNLDHNQLINLTR----AIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ---MFPKDLFA 243 (693)
Q Consensus 171 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~ 243 (693)
..+++|++|++++|.++++.. ..+.++++|++|++++|.+.+++ ..+..+++|+.|+++..... ......+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 445666666666666553332 22334556666666665555543 33455556666665532111 00111233
Q ss_pred cccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCc-ccccCCCCccEEEecCCCCCCc-CChhhhcCCC
Q psy8029 244 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS-DLFWNSTNITNIVLTGHKKLTS-LPSTLFRDCK 321 (693)
Q Consensus 244 ~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~l~~-l~~~~~~~~~ 321 (693)
.+++|+.++++++. ...++. .+..+++|++|++++|.++.... ..+..+++|+.|+++++ +.. ....++..++
T Consensus 268 ~~~~L~~L~l~~~~--~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG--PNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCK 342 (592)
T ss_dssp CCTTCCEEEETTCC--TTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCT
T ss_pred ccccccccCccccc--hhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCC
Confidence 44555555555432 223332 24455566666666555433211 22345556666666522 211 1112223455
Q ss_pred CCcEEEccC-----------CCCCCCC-hhhhccCccCceEeccCCcCcccc--Cc-cCCCCCCeEeCC----CCccccc
Q psy8029 322 KLVKLELQR-----------NKLKYLP-ENLFESLKELYTLNLKNNQLENIT--SL-VGLSGLNSLDLS----WNQLEQI 382 (693)
Q Consensus 322 ~L~~L~l~~-----------n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~l~--~~-~~l~~L~~L~Ls----~n~l~~~ 382 (693)
+|++|++++ +.++... ...+..+++|++|+++.|.+++.. .. ..+++|++|+++ .|.+++.
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 566666652 2333211 111234555666666555554411 11 235556666664 4444442
Q ss_pred c-----ccccCCCCCCcEEECCCCc--CcccccccCCCCccCCCCCcEEECCCCCCCcC-ChhHHhcCCCCcEEECCCCC
Q psy8029 383 N-----LIAFDGLSSLNTVDLSHNL--LTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISSMTSLKELDLRHNN 454 (693)
Q Consensus 383 ~-----~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~ 454 (693)
+ +..+.++++|++|++++|. ++.... ......+++|++|++++|++++. .+..+.++++|+.|++++|.
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL---SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH---HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH---HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 1 1123345556666665332 332210 01112345566666666655542 22333455666666666665
Q ss_pred CccC-CCcccccCCCccEEECCCCCCcee
Q psy8029 455 FSFI-PDQLDSIVSNKLTLDLSFNQIAIV 482 (693)
Q Consensus 455 l~~~-~~~~~~~l~~L~~L~L~~N~l~~~ 482 (693)
+++. .+.....+++|+.|++++|+++..
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 5422 112223455566666666665543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.5e-27 Score=244.11 Aligned_cols=256 Identities=20% Similarity=0.226 Sum_probs=135.5
Q ss_pred ccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEcc
Q psy8029 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182 (693)
Q Consensus 103 L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 182 (693)
++..+++.+ .+.......+..+++|++|++++|.++.+++..|..+++|++|++++|.++++.+ +..+++|++|+++
T Consensus 12 l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 344445554 4544444444445555555555555555544445555555555555555544433 4555555555555
Q ss_pred CCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccc
Q psy8029 183 HNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKE 262 (693)
Q Consensus 183 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 262 (693)
+|++++++ ..++|++|++++|.++.++... +++|++|++++|.++.+++
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~----------------------- 137 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRD----------------------- 137 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGG-----------------------
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccc-----------------------
Confidence 55544332 1244555555555544443321 3344444444444444433
Q ss_pred cCccccCCCCCccEEEcCCCCCcccCcccc-cCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhh
Q psy8029 263 LPSGLFANLPLLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 341 (693)
Q Consensus 263 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 341 (693)
..|..+++|++|++++|.+..++...+ ..+++|++|++++| .++.++... .+++|++|++++|.++.++.. |
T Consensus 138 ---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~-~ 210 (317)
T 3o53_A 138 ---LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE-F 210 (317)
T ss_dssp ---BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC--CCTTCCEEECCSSCCCEECGG-G
T ss_pred ---hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccc--ccccCCEEECCCCcCCcchhh-h
Confidence 334444555555555555544433322 24555555555555 555554332 366677777777777766655 5
Q ss_pred ccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccc-cccccccCCCCCCcEEECC
Q psy8029 342 ESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLE-QINLIAFDGLSSLNTVDLS 399 (693)
Q Consensus 342 ~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~ 399 (693)
..+++|+.|++++|+++.+|.. ..+++|++|++++|.+. +..+..+..++.|+.|+++
T Consensus 211 ~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 6666777777777766666554 55566666666666666 4444555555556655555
No 68
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.92 E-value=1.3e-24 Score=210.94 Aligned_cols=197 Identities=20% Similarity=0.271 Sum_probs=160.2
Q ss_pred ceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECC
Q psy8029 348 YTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427 (693)
Q Consensus 348 ~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls 427 (693)
+.++++++.++.+|... .+++++|++++|.|+++.+..|..+++|++|++++|.++.. .+..|.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE----CTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc----CHHHhhCCcCCCEEECC
Confidence 45667777777766532 25788888888888888888888888888888888888866 36778888889999999
Q ss_pred CCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccC
Q psy8029 428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSA 507 (693)
Q Consensus 428 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l 507 (693)
+|.++.+++..|.++++|+.|+|++|+|+++++..+..+++|+.|+|++|+|+.++...+..+ +++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~L 154 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL--------------RAI 154 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--------------TTC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC--------------CCC
Confidence 999988888888888999999999999999888888888999999999999998877666554 458
Q ss_pred cEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccCC
Q psy8029 508 NIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDTK 572 (693)
Q Consensus 508 ~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~~ 572 (693)
+.+++++|||.|+|++.|+.+|+.... .....+.|..| +|..+.+++.+++.|..+
T Consensus 155 ~~L~L~~N~~~c~c~l~~l~~~l~~~~---------~~~~~~~C~~P~~l~g~~l~~l~~~~~~c~~~ 213 (220)
T 2v9t_B 155 QTMHLAQNPFICDCHLKWLADYLHTNP---------IETSGARCTSPRRLANKRIGQIKSKKFRCSAA 213 (220)
T ss_dssp CEEECCSSCEECSGGGHHHHHHHHHCC---------CBCSCCBEEESGGGTTCBGGGSCGGGCCC---
T ss_pred CEEEeCCCCcCCCCccHHHHHHHHhCC---------CCccCCCcCCchHHcCCchhhCCHHHCcCccc
Confidence 899999999999999999999987642 23356789998 899999999999988765
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1e-23 Score=211.92 Aligned_cols=200 Identities=26% Similarity=0.441 Sum_probs=109.1
Q ss_pred ccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029 77 INTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156 (693)
Q Consensus 77 L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 156 (693)
.+.++++++ .++.++.. +. +++++|++++| .++.+++..|.++++|++|++++|.++.++..+|.++++|++|+
T Consensus 18 ~~~l~~~~~--~l~~ip~~-~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 18 KNSVDCSSK--KLTAIPSN-IP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTEEECTTS--CCSSCCSC-CC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCEEEccCC--CCCccCCC-CC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 345555555 55555421 11 34555666655 55555555555556666666666555555555555555666666
Q ss_pred cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236 (693)
Q Consensus 157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 236 (693)
+++|.+..+++..|..+++|++|++++|+++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|.++.
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 66555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC
Q psy8029 237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI 284 (693)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l 284 (693)
+++..|..+++|++|++++|. +..++...|..+++|+.|++++|.+
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQ--LKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eChhHhccCCCcCEEECCCCc--CCcCCHHHhccccCCCEEEecCCCe
Confidence 555444445555555555554 3344444444444455555544443
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.9e-26 Score=237.02 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=89.9
Q ss_pred cCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccc--cCcccC------CCCCCCcEEEcCCCCCCccCh
Q psy8029 96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITE--LYSGVF------QYVPKLQVLDLGSNDVAYMDP 167 (693)
Q Consensus 96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~------~~l~~L~~L~Ls~n~l~~~~~ 167 (693)
.+.+.++|++|++++| .+ .++...... |++|++++|.++. ++...+ .++++|++|++++|.+++..+
T Consensus 38 ~~~~~~~L~~l~l~~n-~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVD-TE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCC-TT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccc-cc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 3455677888888888 77 666543322 7778888887754 332211 157778888888887775544
Q ss_pred hhh--CCCCCCCEEEccCCCCCCCChhhcCCC-----CCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccc
Q psy8029 168 EIF--KNLTSLRILNLDHNQLINLTRAIFNNV-----PNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235 (693)
Q Consensus 168 ~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (693)
..+ ..+++|++|++++|+++++ +..++.+ ++|++|++++|+++.+++..|..+++|++|++++|.+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 443 6777788888888777776 3444544 67777777777777777666777777777777777654
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=7.3e-24 Score=213.80 Aligned_cols=208 Identities=24% Similarity=0.321 Sum_probs=119.7
Q ss_pred ccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEE
Q psy8029 101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN 180 (693)
Q Consensus 101 ~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 180 (693)
++|++|++++| .++.+++..|.++++|++|++++|.++.+++..|.++++|++|++++|.++++++..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 35666666666 66666665666666666666666666666665566666666666666666666666666666666666
Q ss_pred ccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCC-CCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCc
Q psy8029 181 LDHNQLINLTRAIFNNVPNLRSLDISGNNISILP-SGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS 259 (693)
Q Consensus 181 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 259 (693)
+++|+++++.+..++.+++|++|++++|.++.+. +..+..+++|++|++++|.++.++...|..+++|+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---------- 176 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP---------- 176 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT----------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc----------
Confidence 6666666655555566666666666666665543 34455556666666666665555544444433333
Q ss_pred ccccCccccCCCCCcc-EEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC
Q psy8029 260 LKELPSGLFANLPLLN-TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334 (693)
Q Consensus 260 ~~~i~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~ 334 (693)
.+. .+++++|.+..++...|.. .+|+.|++++| .++.++...|..+++|++|++++|.+.
T Consensus 177 -------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 177 -------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp -------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred -------------ccceeeecCCCcccccCccccCC-CcccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence 111 4445555444444443332 24555555555 455555555555555555555555544
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=6.2e-24 Score=219.45 Aligned_cols=228 Identities=19% Similarity=0.247 Sum_probs=143.6
Q ss_pred CCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccE
Q psy8029 197 VPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNT 276 (693)
Q Consensus 197 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~ 276 (693)
.+++++|++++|.++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|. +..+|.. +..+++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~--l~~lp~~-l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNP--LRALPAS-IASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCC--CCCCCGG-GGGCTTCCE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCc--cccCcHH-HhcCcCCCE
Confidence 35667777777777666554 34466666666666666655433 4556666666666665 3345443 455555555
Q ss_pred EEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhh--------hcCCCCCcEEEccCCCCCCCChhhhccCccCc
Q psy8029 277 VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL--------FRDCKKLVKLELQRNKLKYLPENLFESLKELY 348 (693)
Q Consensus 277 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 348 (693)
|++++|. .++.+|..+ |.++++|++|++++|.++.+|.. +..+++|+
T Consensus 155 L~L~~n~------------------------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~ 209 (328)
T 4fcg_A 155 LSIRACP------------------------ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLK 209 (328)
T ss_dssp EEEEEET------------------------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCC
T ss_pred EECCCCC------------------------CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCC
Confidence 5555543 233333221 34577777777777777777654 56777777
Q ss_pred eEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECC
Q psy8029 349 TLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427 (693)
Q Consensus 349 ~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls 427 (693)
+|++++|++++++.. ..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+. .+..+..+++|++|+|+
T Consensus 210 ~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp EEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB----CCTTGGGCTTCCEEECT
T ss_pred EEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh----cchhhhcCCCCCEEeCC
Confidence 777777777776544 5666777777777777766666677777777777777666544 34556666777777777
Q ss_pred CCCCCcCChhHHhcCCCCcEEECCCCCCccC
Q psy8029 428 YNRISSLFDDWISSMTSLKELDLRHNNFSFI 458 (693)
Q Consensus 428 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 458 (693)
+|.+.+..|..++.+++|+.+++..+.+..+
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred CCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 7766666666667777777776666655544
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.7e-23 Score=207.70 Aligned_cols=191 Identities=26% Similarity=0.367 Sum_probs=151.2
Q ss_pred CCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECC
Q psy8029 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLS 399 (693)
Q Consensus 322 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 399 (693)
..++++++++.++.+|... .+.++.|++++|+++.++.. ..+++|++|+|++|.++++.+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3556666666666666543 24667777777777665543 667777777777888877777778888888888888
Q ss_pred CCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCC
Q psy8029 400 HNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479 (693)
Q Consensus 400 ~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 479 (693)
+|.++.. .+..|..+++|++|+|++|+++++++..|..+++|+.|+|++|+|+++++..+..+++|+.|++++|++
T Consensus 92 ~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 92 NNQLASL----PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp TSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccccc----ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 8888755 355677888888888888888888888788888999999999999988887788888899999999999
Q ss_pred ceeeccchhhhcccCCCCCccccccccCcEEEcCCCccccc-CCcHHHHHHHhcc
Q psy8029 480 AIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACN-CSNYDLIRFVSKK 533 (693)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~-C~~~~~~~~~~~~ 533 (693)
+.+++..+..+ ++++.+++++|+|.|+ |++.|+.+|+...
T Consensus 168 ~~~~~~~~~~l--------------~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 168 QSVPHGAFDRL--------------GKLQTITLFGNQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp SCCCTTTTTTC--------------TTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred CccCHHHHhCC--------------CCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence 88877666554 4588999999999999 9999999999865
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=4.5e-26 Score=234.20 Aligned_cols=177 Identities=18% Similarity=0.158 Sum_probs=130.6
Q ss_pred CcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCccccc-ccccC-------CCCCCcEEEeeCCcccc-cCc
Q psy8029 73 NITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLH-KDIFK-------GTPQLESLNLRGNSITE-LYS 143 (693)
Q Consensus 73 ~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~-~~~~~-------~l~~L~~L~L~~n~i~~-~~~ 143 (693)
+.+.|+.++++++ .+ .++ ..+... |++|++++| .++.+. +..+. ++++|++|++++|.+++ ++.
T Consensus 41 ~~~~L~~l~l~~n--~l-~~p-~~~~~~--L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 41 GGRSLEYLLKRVD--TE-ADL-GQFTDI--IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEECTTHHHHCC--TT-CCC-HHHHHH--HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred cCCCceeEeeccc--cc-ccH-HHHHHH--Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 3556888888888 77 555 333333 889999999 886532 12122 58899999999999986 555
Q ss_pred ccC-CCCCCCcEEEcCCCCCCccChhhhCCC-----CCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcC---C
Q psy8029 144 GVF-QYVPKLQVLDLGSNDVAYMDPEIFKNL-----TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISIL---P 214 (693)
Q Consensus 144 ~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~---~ 214 (693)
..| ..+++|++|++++|.++++ +..+..+ ++|++|++++|+++++.+..|+.+++|++|++++|++.+. +
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 443 8899999999999999988 5666666 8999999999999999988899999999999999987642 1
Q ss_pred -CCcCCCCCCCcEEEcCCCccccC---ChhhhhcccCceEEEEecCC
Q psy8029 215 -SGVFSDLRKLQTFYANSNRFQMF---PKDLFAEMKYLQVIKISYHK 257 (693)
Q Consensus 215 -~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~ 257 (693)
...+..+++|++|++++|.++.+ +...+..+++|++|++++|.
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 22237788888888888888743 33334445555555555555
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=8.8e-27 Score=262.26 Aligned_cols=373 Identities=16% Similarity=0.160 Sum_probs=214.4
Q ss_pred CcccccEEEccCCcCcccccccccC-CCCCCcEEEeeCC-ccccc-CcccCCCCCCCcEEEcCCCCCCccChhhh----C
Q psy8029 99 GLHFVKHILLSHNKEITGLHKDIFK-GTPQLESLNLRGN-SITEL-YSGVFQYVPKLQVLDLGSNDVAYMDPEIF----K 171 (693)
Q Consensus 99 ~l~~L~~L~Ls~n~~i~~~~~~~~~-~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~ 171 (693)
.+++|++|++++| .+++.....+. .+++|++|++++| .++.. ....+.++++|++|++++|.+++..+..+ .
T Consensus 103 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4566777777776 56554433343 4667777777766 34331 11223356677777777766554443322 2
Q ss_pred CCCCCCEEEccCCCCCCCChhh----cCCCCCCcEEECcCC-CCCcCCCCcCCCCCCCcEEEcCCCc-------cccCCh
Q psy8029 172 NLTSLRILNLDHNQLINLTRAI----FNNVPNLRSLDISGN-NISILPSGVFSDLRKLQTFYANSNR-------FQMFPK 239 (693)
Q Consensus 172 ~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~ 239 (693)
.+++|++|++++|. ..+.... +..+++|++|++++| .++. .+..+..+++|+.|+++.+. +..++.
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 45677777777665 2222222 233567777777766 2223 22234556677777654432 233333
Q ss_pred hhhhcccCceEE-EEecCCCcccccCccccCCCCCccEEEcCCCCCccc-CcccccCCCCccEEEecCCCCCCcCChhhh
Q psy8029 240 DLFAEMKYLQVI-KISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317 (693)
Q Consensus 240 ~~~~~~~~L~~L-~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~ 317 (693)
.+.++++|+.+ .+.... ...++. .+..+++|++|++++|.++.. ....+..+++|+.|++++| ....-...+.
T Consensus 260 -~l~~~~~L~~Ls~~~~~~--~~~l~~-~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~ 334 (594)
T 2p1m_B 260 -ALSGCKELRCLSGFWDAV--PAYLPA-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA 334 (594)
T ss_dssp -HHHTCTTCCEEECCBTCC--GGGGGG-GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred -HHhcCCCcccccCCcccc--hhhHHH-HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence 35677777777 333222 222322 133567788888877775532 1223456778888888776 1111111223
Q ss_pred cCCCCCcEEEccC---------CCCCCCChh-hhccCccCceEeccCCcCcccc--Cc-cCCCCCCeEeCC--C----Cc
Q psy8029 318 RDCKKLVKLELQR---------NKLKYLPEN-LFESLKELYTLNLKNNQLENIT--SL-VGLSGLNSLDLS--W----NQ 378 (693)
Q Consensus 318 ~~~~~L~~L~l~~---------n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~l~--~~-~~l~~L~~L~Ls--~----n~ 378 (693)
..+++|++|++.+ +.++..... ....+++|+.|.++.|.++... .. ..+++|++|+++ + +.
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 3577788888743 233321111 1234778888877777776522 22 357788888887 3 45
Q ss_pred cccccc-----cccCCCCCCcEEECCCCcCcccccccCCCCcc-CCCCCcEEECCCCCCCcCChhHH-hcCCCCcEEECC
Q psy8029 379 LEQINL-----IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK-QCVNLETINLSYNRISSLFDDWI-SSMTSLKELDLR 451 (693)
Q Consensus 379 l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~ 451 (693)
+++... ..+..+++|+.|++++ .++... ...+. .+++|++|++++|.+++.....+ .++++|+.|+++
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~----~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV----FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH----HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC-cccHHH----HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 553221 1255678888888876 555432 12222 37789999999998876655545 678899999999
Q ss_pred CCCCccCCCc-ccccCCCccEEECCCCCCceeec
Q psy8029 452 HNNFSFIPDQ-LDSIVSNKLTLDLSFNQIAIVDL 484 (693)
Q Consensus 452 ~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~ 484 (693)
+|.+++.... ....+++|+.|++++|+++....
T Consensus 490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 523 (594)
T 2p1m_B 490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGAC 523 (594)
T ss_dssp SCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHH
T ss_pred CCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHH
Confidence 9988643332 23457888999999998854433
No 76
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.91 E-value=2.9e-23 Score=201.29 Aligned_cols=196 Identities=26% Similarity=0.303 Sum_probs=159.2
Q ss_pred ceEeccCCcCccccCccCCCCCCeEeCCCCccccccc-cccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEEC
Q psy8029 348 YTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINL-IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426 (693)
Q Consensus 348 ~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~L 426 (693)
+.+++++|.++.+|.. -...+++|++++|.++++.+ ..|..+++|++|++++|.++.. .+..|..+++|++|+|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI----EEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE----CHHHhCCCCCCCEEEC
Confidence 4666777777666653 23356788888888887743 5678888889999988888866 3567888899999999
Q ss_pred CCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCcccccccc
Q psy8029 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARS 506 (693)
Q Consensus 427 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 506 (693)
++|.++++++..|..+++|++|+|++|+|+++++..+..+++|+.|+|++|+|+++.+..+..+ ++
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~ 154 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL--------------HS 154 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC--------------TT
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC--------------CC
Confidence 9999999999889999999999999999999988888899999999999999999887777655 45
Q ss_pred CcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccC
Q psy8029 507 ANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDT 571 (693)
Q Consensus 507 l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~ 571 (693)
++.+++++|||.|+|++.|+..|+.... ....+..|..| +|..+.+++...+.|..
T Consensus 155 L~~L~L~~N~l~c~c~l~~l~~~~~~~~---------~~~~~~~C~~P~~l~g~~l~~l~~~~~~~~~ 213 (220)
T 2v70_A 155 LSTLNLLANPFNCNCYLAWLGEWLRKKR---------IVTGNPRCQKPYFLKEIPIQDVAIQDFTCDD 213 (220)
T ss_dssp CCEEECCSCCEECSGGGHHHHHHHHHSC---------CBCCCCEEEESGGGTTEEGGGSCGGGCCCCC
T ss_pred CCEEEecCcCCcCCCchHHHHHHHHhcC---------ccccCCccCCChHHCCCChhhCCHHHccccc
Confidence 8899999999999999999999997541 22345689988 88889999887776653
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.3e-26 Score=260.94 Aligned_cols=402 Identities=16% Similarity=0.157 Sum_probs=275.6
Q ss_pred cCCCcccccEEEccCCcCccccc--------------ccccCCCCCCcEEEeeCCcccccCcccCC-CCCCCcEEEcCCC
Q psy8029 96 YFDGLHFVKHILLSHNKEITGLH--------------KDIFKGTPQLESLNLRGNSITELYSGVFQ-YVPKLQVLDLGSN 160 (693)
Q Consensus 96 ~~~~l~~L~~L~Ls~n~~i~~~~--------------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n 160 (693)
.+.++++|++|+++++..+.++. ...+..+++|++|++++|.++......+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45566777777777763343321 12234678999999999988764333343 6899999999999
Q ss_pred -CCCcc-ChhhhCCCCCCCEEEccCCCCCCCChhhc----CCCCCCcEEECcCCCCCcCCCCc----CCCCCCCcEEEcC
Q psy8029 161 -DVAYM-DPEIFKNLTSLRILNLDHNQLINLTRAIF----NNVPNLRSLDISGNNISILPSGV----FSDLRKLQTFYAN 230 (693)
Q Consensus 161 -~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~l~ 230 (693)
.+... .+..+.++++|++|++++|.+++.....+ ..+++|++|++++|. ..+.... ...+++|++|+++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC
Confidence 55542 23344579999999999999876554333 367899999999997 3333222 2447999999999
Q ss_pred CC-ccccCChhhhhcccCceEEEEecCCCc-----ccccCccccCCCCCccEE-EcCCCCCcccCcccccCCCCccEEEe
Q psy8029 231 SN-RFQMFPKDLFAEMKYLQVIKISYHKDS-----LKELPSGLFANLPLLNTV-ILGESSIAELPSDLFWNSTNITNIVL 303 (693)
Q Consensus 231 ~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~i~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~L~~L~l 303 (693)
+| .+.. .+..+..+++|++|+++.+... ...++. .+.++++|+.+ .+.+.....++ ..+..+++|+.|++
T Consensus 220 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~~~~~l~-~~~~~~~~L~~L~L 296 (594)
T 2p1m_B 220 RAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNL 296 (594)
T ss_dssp TTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTCCGGGGG-GGHHHHTTCCEEEC
T ss_pred CCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHH-HHhcCCCcccccCCcccchhhHH-HHHHhhCCCCEEEc
Confidence 98 4445 3445778999999997765310 122333 36789999999 44443333333 23346789999999
Q ss_pred cCCCCCCcC-ChhhhcCCCCCcEEEccCCCCCC-CChhhhccCccCceEeccC---------CcCcc--ccCc-cCCCCC
Q psy8029 304 TGHKKLTSL-PSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNLKN---------NQLEN--ITSL-VGLSGL 369 (693)
Q Consensus 304 ~~n~~l~~l-~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~Ls~---------n~l~~--l~~~-~~l~~L 369 (693)
++| .++.. ...++..+++|++|++++| ++. ........+++|+.|++++ +.+++ +... .++++|
T Consensus 297 ~~~-~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L 374 (594)
T 2p1m_B 297 SYA-TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374 (594)
T ss_dssp TTC-CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTC
T ss_pred cCC-CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhH
Confidence 999 45532 2333568999999999998 431 1122234689999999943 44443 2222 458999
Q ss_pred CeEeCCCCccccccccccC-CCCCCcEEECC--C----CcCcccccc-cCCCCccCCCCCcEEECCCCCCCcCChhHHhc
Q psy8029 370 NSLDLSWNQLEQINLIAFD-GLSSLNTVDLS--H----NLLTFDEYQ-YGYSPLKQCVNLETINLSYNRISSLFDDWISS 441 (693)
Q Consensus 370 ~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 441 (693)
++|.++.|.+++.....+. .+++|+.|+++ + +.++..... .....+..+++|++|++++ .+++.....+..
T Consensus 375 ~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~ 453 (594)
T 2p1m_B 375 ESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT 453 (594)
T ss_dssp CEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH
T ss_pred HHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH
Confidence 9999999999877666665 58999999999 4 555522100 0011256789999999988 777666555665
Q ss_pred -CCCCcEEECCCCCCccCCCccc-ccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcc
Q psy8029 442 -MTSLKELDLRHNNFSFIPDQLD-SIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPI 517 (693)
Q Consensus 442 -l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~ 517 (693)
+++|+.|++++|.+++.....+ ..+++|+.|++++|+++......+... .++|+.|++++|++
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~-------------l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK-------------LETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG-------------GGGSSEEEEESSCC
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh-------------CCCCCEEeeeCCCC
Confidence 9999999999999976544333 568999999999999965433322210 14689999999987
No 78
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=4.6e-23 Score=212.95 Aligned_cols=229 Identities=19% Similarity=0.190 Sum_probs=191.8
Q ss_pred ccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCc
Q psy8029 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 324 (693)
Q Consensus 245 ~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~ 324 (693)
.++++.|++++|. +..+|.. +..+++|++|++++|.+..+|. .+..+++|++|++++| .++.+|.. |..+++|+
T Consensus 80 ~~~l~~L~L~~n~--l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVP--LPQFPDQ-AFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARN-PLRALPAS-IASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSC--CSSCCSC-GGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCC
T ss_pred ccceeEEEccCCC--chhcChh-hhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCC-ccccCcHH-HhcCcCCC
Confidence 4678888888887 4577776 4558888888888888887764 4578889999999999 88888876 57899999
Q ss_pred EEEccCCCC-CCCChhh--------hccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCc
Q psy8029 325 KLELQRNKL-KYLPENL--------FESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLN 394 (693)
Q Consensus 325 ~L~l~~n~l-~~~~~~~--------~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 394 (693)
+|++++|.+ ..+|... |..+++|++|++++|+++.+|.. ..+++|++|++++|.++++.+ .+..+++|+
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~ 232 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLE 232 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCC
Confidence 999999754 4566543 34599999999999999988876 889999999999999998766 688899999
Q ss_pred EEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEEC
Q psy8029 395 TVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDL 474 (693)
Q Consensus 395 ~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 474 (693)
+|++++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|+.|+|++|++.+..+..+..+++++.+++
T Consensus 233 ~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 233 ELDLRGCTALRN----YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp EEECTTCTTCCB----CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred EEECcCCcchhh----hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 999999998866 4677899999999999999999888888999999999999999999888888999999999999
Q ss_pred CCCCCceeec
Q psy8029 475 SFNQIAIVDL 484 (693)
Q Consensus 475 ~~N~l~~~~~ 484 (693)
..|.+..+..
T Consensus 309 ~~~~~~~l~~ 318 (328)
T 4fcg_A 309 PPHLQAQLDQ 318 (328)
T ss_dssp CGGGSCC---
T ss_pred CHHHHHHHhh
Confidence 9888776543
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-24 Score=236.42 Aligned_cols=236 Identities=22% Similarity=0.247 Sum_probs=168.0
Q ss_pred CCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEE
Q psy8029 173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK 252 (693)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 252 (693)
+++|++|+|++|.++++++..|+.+++|++|+|++|.++++++ +..+++|++|++++|.++.++. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3478888888888888887778888888888888888876655 6777788888888777665442 14455555
Q ss_pred EecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCC
Q psy8029 253 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 332 (693)
Q Consensus 253 l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~ 332 (693)
+++| .++.++.. .+++|+.|++++| .++.+++..|..+++|++|++++|.
T Consensus 106 L~~N--------------------------~l~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 106 AANN--------------------------NISRVSCS---RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp CCSS--------------------------CCCCEEEC---CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred CcCC--------------------------cCCCCCcc---ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCC
Confidence 5554 44443322 2345566666666 5555555455667777777777777
Q ss_pred CCCCChhhhc-cCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccC
Q psy8029 333 LKYLPENLFE-SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYG 411 (693)
Q Consensus 333 l~~~~~~~~~-~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 411 (693)
++.+++..|. .+++|+.|+|++|.+++++....+++|++|+|++|.++++++. |..+++|+.|++++|.+++.
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l----- 229 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI----- 229 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-----
T ss_pred CCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-----
Confidence 7765444443 6778888888888888777666788888888888888887764 77788888888888888864
Q ss_pred CCCccCCCCCcEEECCCCCCC-cCChhHHhcCCCCcEEECC
Q psy8029 412 YSPLKQCVNLETINLSYNRIS-SLFDDWISSMTSLKELDLR 451 (693)
Q Consensus 412 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~ 451 (693)
+..+..+++|+.|++++|.+. +..|.++..++.|+.++++
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 455777788888888888887 5556667777777777664
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.8e-23 Score=206.13 Aligned_cols=207 Identities=16% Similarity=0.310 Sum_probs=131.9
Q ss_pred CccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCc-ccccCcccCCCCCCCcEEEcCC-CCCCcc
Q psy8029 88 NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS-ITELYSGVFQYVPKLQVLDLGS-NDVAYM 165 (693)
Q Consensus 88 ~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~ 165 (693)
.++.++. +. ++|++|++++| +++.+++..|.++++|++|++++|+ ++.+++.+|.++++|++|++++ |.++.+
T Consensus 22 ~l~~ip~--~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 22 DIQRIPS--LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp SCSSCCC--CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred CccccCC--CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 3555553 22 36777777777 7777777677777777777777775 7777766677777777777776 777777
Q ss_pred ChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCc---EEECcCC-CCCcCCCCcCCCCCCCc-EEEcCCCccccCChh
Q psy8029 166 DPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLR---SLDISGN-NISILPSGVFSDLRKLQ-TFYANSNRFQMFPKD 240 (693)
Q Consensus 166 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~ 240 (693)
++..|.++++|++|++++|++++++. |..+++|+ +|++++| .++.+++..|.++++|+ .|++++|.++.++..
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh
Confidence 76667777777777777777776554 56666666 7777777 67766666666666676 677766666666655
Q ss_pred hhhcccCceEEEEecCCCcccccCccccCCC-CCccEEEcCCCCCcccCcccccCCCCccEEEecCC
Q psy8029 241 LFAEMKYLQVIKISYHKDSLKELPSGLFANL-PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306 (693)
Q Consensus 241 ~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 306 (693)
.|.. ++|++|++++|+. ++.++...|..+ ++|+.|++++|.++.++.. .+++|+.|+++++
T Consensus 175 ~~~~-~~L~~L~L~~n~~-l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKY-LTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTTT-CEEEEEECTTCTT-CCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred hcCC-CCCCEEEcCCCCC-cccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 5544 5566666655520 234444445555 5555555555555555443 2344445554443
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.3e-24 Score=231.98 Aligned_cols=236 Identities=19% Similarity=0.230 Sum_probs=132.1
Q ss_pred cccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEE
Q psy8029 100 LHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179 (693)
Q Consensus 100 l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 179 (693)
+++|++|+|++| .++++++..|..+++|++|+|++|.++++++ |..+++|++|++++|.++++++ .++|++|
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 345666666666 6666555556666666666666666655443 5556666666666665554432 1556666
Q ss_pred EccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhh-cccCceEEEEecCCC
Q psy8029 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFA-EMKYLQVIKISYHKD 258 (693)
Q Consensus 180 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~~ 258 (693)
++++|.++++++. .+++|++|++++|.++++++..+..+++|+.|++++|.++.+++..+. .+++|++|++++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~- 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF- 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-
Confidence 6666666555432 345566666666666665555555566666666666666654443333 45566666666665
Q ss_pred cccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC-CCC
Q psy8029 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-YLP 337 (693)
Q Consensus 259 ~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~-~~~ 337 (693)
+..++. +..+++|+.|++++|.++++++. |..+++|+.|++++| .+..+|.. +..+++|+.|++++|.+. ...
T Consensus 181 -l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 181 -IYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVLIEKA-LRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp -CCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCEECTT-CCCCTTCCEEECTTCCBCHHHH
T ss_pred -cccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCC-cCcccchh-hccCCCCCEEEcCCCCCcCcch
Confidence 323333 22456666666666666666554 455566666666666 55555554 345566666666666655 222
Q ss_pred hhhhccCccCceEecc
Q psy8029 338 ENLFESLKELYTLNLK 353 (693)
Q Consensus 338 ~~~~~~~~~L~~L~Ls 353 (693)
+..+..++.|+.++++
T Consensus 255 ~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCcEEecc
Confidence 2234445555555443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4e-23 Score=203.54 Aligned_cols=191 Identities=15% Similarity=0.309 Sum_probs=124.1
Q ss_pred CcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCC-CCccChhhhCCCCCCCEEEccC-CCCCCCC
Q psy8029 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND-VAYMDPEIFKNLTSLRILNLDH-NQLINLT 190 (693)
Q Consensus 113 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~ 190 (693)
+++.+|. +. ++|++|++++|+++++++..|.++++|++|++++|. ++.+++.+|.++++|++|++++ |+++.++
T Consensus 22 ~l~~ip~--~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS--LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC--CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC--CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 4666665 32 378888888888888887778888888888888886 7788777778888888888887 7888777
Q ss_pred hhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCc---EEEcCCC-ccccCChhhhhcccCce-EEEEecCCCcccccCc
Q psy8029 191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ---TFYANSN-RFQMFPKDLFAEMKYLQ-VIKISYHKDSLKELPS 265 (693)
Q Consensus 191 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~i~~ 265 (693)
+..|.++++|++|++++|.++.++. |..+++|+ +|++++| .++.+++..|..+++|+ +|++++|. +..++.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~--l~~i~~ 173 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG--FTSVQG 173 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC--CCEECT
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC--CcccCH
Confidence 7777778888888888887777665 66666666 6666666 66666655555555555 55555555 334554
Q ss_pred cccCCCCCccEEEcCCCC-CcccCcccccCC-CCccEEEecCCCCCCcCC
Q psy8029 266 GLFANLPLLNTVILGESS-IAELPSDLFWNS-TNITNIVLTGHKKLTSLP 313 (693)
Q Consensus 266 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~~l~~l~ 313 (693)
..|.. ++|+.|++++|. ++.++...|.++ ++|+.|++++| .++.+|
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~ 221 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALP 221 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCC
T ss_pred hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCC
Confidence 44443 445555555542 444444444444 44444444444 343433
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.3e-22 Score=202.15 Aligned_cols=194 Identities=26% Similarity=0.336 Sum_probs=164.4
Q ss_pred cCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEE
Q psy8029 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVD 397 (693)
Q Consensus 318 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 397 (693)
..+++|++|++++|.++.++. +..+++|++|++++|.+++++....+++|++|++++|.++++.+..|..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 456778888888888877765 677888888888888888887678888999999999999998888889999999999
Q ss_pred CCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCC
Q psy8029 398 LSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN 477 (693)
Q Consensus 398 L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 477 (693)
+++|.++.. .+..+..+++|++|++++|.++++++..+..+++|+.|++++|+++++++..+..+++|+.|++++|
T Consensus 116 L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 116 LVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCCcc----CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 999999865 3556788999999999999999998888889999999999999999998888888999999999999
Q ss_pred CCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHh
Q psy8029 478 QIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVS 531 (693)
Q Consensus 478 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~ 531 (693)
+++++++..+..+ ++++.+++++|||.|+|+ +.++..|..
T Consensus 192 ~l~~~~~~~~~~l--------------~~L~~L~l~~N~~~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 192 QLKSVPDGVFDRL--------------TSLQYIWLHDNPWDCTCPGIRYLSEWIN 232 (272)
T ss_dssp CCSCCCTTTTTTC--------------TTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred cCCccCHHHHhCC--------------cCCCEEEccCCCccccCcHHHHHHHHHH
Confidence 9998877666554 458899999999999997 445555543
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2e-22 Score=204.22 Aligned_cols=204 Identities=25% Similarity=0.273 Sum_probs=180.2
Q ss_pred ccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCcc
Q psy8029 267 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346 (693)
Q Consensus 267 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 346 (693)
.++.++++++++++++.++.+|..++ ++++.|++++| .++.++...|..+++|++|++++|.++.++.. ..+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred cccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence 35677888999999988888887653 67889999999 88888877888999999999999999887763 67899
Q ss_pred CceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEE
Q psy8029 347 LYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425 (693)
Q Consensus 347 L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~ 425 (693)
|++|++++|+++.+|.. ..+++|++|++++|+++++.+..|.++++|++|++++|.++.. .+..|..+++|+.|+
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL----PPGLLTPTPKLEKLS 154 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc----ChhhcccccCCCEEE
Confidence 99999999999998876 7889999999999999999999999999999999999999966 356688899999999
Q ss_pred CCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCce
Q psy8029 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAI 481 (693)
Q Consensus 426 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 481 (693)
|++|+++++++..|..+++|+.|+|++|+|+.++...+ ....|+.|++++|++..
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCccC
Confidence 99999999999888999999999999999999887744 56689999999999975
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=4.8e-23 Score=215.14 Aligned_cols=242 Identities=22% Similarity=0.353 Sum_probs=148.9
Q ss_pred cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCC-ccChhhhCCCCCCCE-EEc
Q psy8029 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA-YMDPEIFKNLTSLRI-LNL 181 (693)
Q Consensus 104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~-L~L 181 (693)
++++.+++ +++.+|.+. .+++++|+|++|+|+.+++++|.++++|++|+|++|.+. .+++.+|.+++++++ +.+
T Consensus 12 ~~v~C~~~-~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEEST-TCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCC-CCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34556666 666666543 235666666666666666666666666666666666543 344455555555543 333
Q ss_pred cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK 261 (693)
Q Consensus 182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 261 (693)
++|+++.+.+..|..+++|++|++++|.++.+++.. +....++..+++.++.. +.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~~~~l~~l~l~~~~~-i~ 142 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH------------------------KIHSLQKVLLDIQDNIN-IH 142 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT------------------------TCCBSSCEEEEEESCTT-CC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchh------------------------hcccchhhhhhhccccc-cc
Confidence 445555555555555555555555555555444433 33444455555544221 34
Q ss_pred ccCccccCCCC-CccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhh
Q psy8029 262 ELPSGLFANLP-LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL 340 (693)
Q Consensus 262 ~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 340 (693)
.++...|..+. .++.|++++|.++.++..+|.. .+++.+++.++..++.+|..+|.++++|++|++++|+++.+|...
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~ 221 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 221 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred cccccchhhcchhhhhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh
Confidence 55555555553 5777888888888887777643 578888887655888888888888899999999999998888766
Q ss_pred hccCccCceEeccCCcCccccCccCCCCCCeEeCCCC
Q psy8029 341 FESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWN 377 (693)
Q Consensus 341 ~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n 377 (693)
|.++++|+.+++ +.++.+|....+++|+.++++++
T Consensus 222 ~~~L~~L~~l~~--~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARST--YNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTC--TTCCCCCCTTTCCSCCEEECSCH
T ss_pred hccchHhhhccC--CCcCcCCCchhCcChhhCcCCCC
Confidence 555444444332 34666776667777777777654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=8.1e-23 Score=209.72 Aligned_cols=229 Identities=16% Similarity=0.157 Sum_probs=181.3
Q ss_pred CCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccC--CCcccccEEEccCCcCccccc----ccc
Q psy8029 48 GPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYF--DGLHFVKHILLSHNKEITGLH----KDI 121 (693)
Q Consensus 48 ~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~--~~l~~L~~L~Ls~n~~i~~~~----~~~ 121 (693)
..++.+.+.++.+.+..+..+......+.|++|++++| .++...+..+ ..+++|++|++++| .++... ...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL--KITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC--CCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC--EeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHH
Confidence 46789999999998888888877777888999999999 8887776777 89999999999999 888632 234
Q ss_pred cCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCc---cCh-hhhCCCCCCCEEEccCCCCCCCChh---hc
Q psy8029 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAY---MDP-EIFKNLTSLRILNLDHNQLINLTRA---IF 194 (693)
Q Consensus 122 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~ 194 (693)
+..+++|++|++++|.++.+++..|+.+++|++|++++|.+.+ +.+ ..+..+++|++|++++|+++.++.. .+
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 5678999999999999999988889999999999999998764 222 2346889999999999999865442 35
Q ss_pred CCCCCCcEEECcCCCCCcCCCCcCCCC---CCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCC
Q psy8029 195 NNVPNLRSLDISGNNISILPSGVFSDL---RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271 (693)
Q Consensus 195 ~~l~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l 271 (693)
+.+++|++|++++|.++.+.+..+..+ ++|++|++++|.++.++...+ ++|++|++++|+ ++.+|. +..+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~--l~~~~~--~~~l 293 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNR--LNRAPQ--PDEL 293 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCC--CCSCCC--TTSC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCc--CCCCch--hhhC
Confidence 778999999999999998855445555 689999999998887776542 677778887777 444443 4566
Q ss_pred CCccEEEcCCCCCcc
Q psy8029 272 PLLNTVILGESSIAE 286 (693)
Q Consensus 272 ~~L~~L~l~~n~l~~ 286 (693)
++|+.|++++|.++.
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 777777777776653
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.1e-22 Score=204.48 Aligned_cols=176 Identities=30% Similarity=0.478 Sum_probs=88.3
Q ss_pred ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029 75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154 (693)
Q Consensus 75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 154 (693)
+.|+.|+++++ .++.++ .++.+++|++|++++| .+++++ .+..+++|++|++++|.++++++..|.++++|++
T Consensus 41 ~~L~~L~l~~~--~i~~~~--~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 41 NSIDQIIANNS--DIKSVQ--GIQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp TTCCEEECTTS--CCCCCT--TGGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cceeeeeeCCC--Cccccc--ccccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34455555554 444443 3444555555555555 454443 2444555555555555555554444455555555
Q ss_pred EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcc
Q psy8029 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234 (693)
Q Consensus 155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 234 (693)
|++++|.++++++..|..+++|++|++++|+++++++..|+.+++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 55555555555444445555555555555555554444444555555555555555555444444455555555555555
Q ss_pred ccCChhhhhcccCceEEEEecCC
Q psy8029 235 QMFPKDLFAEMKYLQVIKISYHK 257 (693)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~n~ 257 (693)
+.+++..|..+++|++|++++|.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHHHHhCCcCCCEEEccCCC
Confidence 54444444444455555554443
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.88 E-value=1.3e-22 Score=212.80 Aligned_cols=207 Identities=28% Similarity=0.350 Sum_probs=161.9
Q ss_pred cEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--c-CCCCCCeEeCCCCccccccccccCCCCCCcEEECCC
Q psy8029 324 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--V-GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSH 400 (693)
Q Consensus 324 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 400 (693)
+.++++++.++.+|... ...++.|+|++|+++.++.. . .+++|++|+|++|.|+++.+.+|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777777777643 34577788888888776654 3 788888888888888888888888899999999999
Q ss_pred CcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCccc---ccCCCccEEECCCC
Q psy8029 401 NLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD---SIVSNKLTLDLSFN 477 (693)
Q Consensus 401 n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N 477 (693)
|.++.. ....|..+++|++|+|++|.|+++.+..|..+++|+.|+|++|+|++++...+ ..+++|+.|+|++|
T Consensus 98 N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 98 NHLHTL----DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp SCCCEE----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CcCCcC----CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 998866 35678888999999999999999888889999999999999999999888776 56888999999999
Q ss_pred CCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHH-HHHHhcccccceeeeeeeccCceeecCC
Q psy8029 478 QIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDL-IRFVSKKMTKTVYQMLELVTDNLECFGN 554 (693)
Q Consensus 478 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 554 (693)
+|+.++...+..+... .++.+++++|||.|||++.|+ ..|....... + ......++|..|
T Consensus 174 ~l~~l~~~~~~~l~~~------------~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~-~----~~~~~~~~C~~p 234 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAW------------VKNGLYLHNNPLECDCKLYQLFSHWQYRQLSS-V----MDFQEDLYCMHS 234 (361)
T ss_dssp CCCCCCHHHHHHSCHH------------HHTTEECCSSCEECCHHHHHHHHHHHHTTCHH-H----HTTGGGCEEESS
T ss_pred CCCccCHHHhhhccHh------------hcceEEecCCCccCCcCcHHHHHHHHHhcCCc-h----hccCcCCEeCCC
Confidence 9998887777665321 135799999999999999986 5676553211 1 112356889888
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=4.2e-22 Score=207.95 Aligned_cols=239 Identities=22% Similarity=0.314 Sum_probs=197.2
Q ss_pred cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccc-cCcccCCCCCCCcE-E
Q psy8029 78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITE-LYSGVFQYVPKLQV-L 155 (693)
Q Consensus 78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~-L 155 (693)
++++.+++ +++.||.. + .+++++|+|++| +|+.+++++|.++++|++|+|++|++.+ ++.++|.+++++++ +
T Consensus 12 ~~v~C~~~--~Lt~iP~~-l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQES--KVTEIPSD-L--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEEST--TCCSCCTT-C--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCC--CCCccCcC-c--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 56778887 89999843 3 368999999999 9999999999999999999999999855 88888999998876 5
Q ss_pred EcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcC-CCCCcCCCCcCCCCC-CCcEEEcCCCc
Q psy8029 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG-NNISILPSGVFSDLR-KLQTFYANSNR 233 (693)
Q Consensus 156 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~-~L~~L~l~~n~ 233 (693)
.++.|+++.+++.+|..+++|++|++++|+++.+++..+....++..+++.+ +.+..++...|..+. .++.|++++|.
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 6677899999999999999999999999999999887777788889999965 678888888887775 68899999999
Q ss_pred cccCChhhhhcccCceEEEEec-CCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcC
Q psy8029 234 FQMFPKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 312 (693)
Q Consensus 234 l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l 312 (693)
++.++..+|. ..+|+++++.+ |. ++.+|..+|..+++|++|++++|+++.+|...| .+|+.|.+.++..++.+
T Consensus 166 i~~i~~~~f~-~~~L~~l~l~~~n~--l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 166 IQEIHNSAFN-GTQLDELNLSDNNN--LEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKL 239 (350)
T ss_dssp CCEECTTSST-TEEEEEEECTTCTT--CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCC
T ss_pred ccCCChhhcc-ccchhHHhhccCCc--ccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcC
Confidence 9999888774 46788888875 44 668888888888888999998888888887554 45666666666567777
Q ss_pred ChhhhcCCCCCcEEEccC
Q psy8029 313 PSTLFRDCKKLVKLELQR 330 (693)
Q Consensus 313 ~~~~~~~~~~L~~L~l~~ 330 (693)
|. +..+++|+.+++++
T Consensus 240 P~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 240 PT--LEKLVALMEASLTY 255 (350)
T ss_dssp CC--TTTCCSCCEEECSC
T ss_pred CC--chhCcChhhCcCCC
Confidence 75 46677777777754
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.6e-22 Score=205.37 Aligned_cols=195 Identities=25% Similarity=0.367 Sum_probs=115.7
Q ss_pred CCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceE
Q psy8029 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350 (693)
Q Consensus 271 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 350 (693)
+++|+.|+++++.+..++ .+..+++|+.|++++| .+..++. +..+++|++|++++|.++.++. +..+++|+.|
T Consensus 40 l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCch--hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCchh--hcCCCCCCEE
Confidence 445555555555555443 2344555555555555 5555554 4555666666666666655542 4556666666
Q ss_pred eccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCC
Q psy8029 351 NLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNR 430 (693)
Q Consensus 351 ~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 430 (693)
++++|++++++....+++|++|++++|.++++.+ +..+++|++|++++|.++.. .++..+++|++|++++|.
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL------TPLANLSKLTTLKADDNK 184 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSC
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC------hhhcCCCCCCEEECCCCc
Confidence 6666666665555566666666666666665544 55566666666666666633 125566666666666666
Q ss_pred CCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeec
Q psy8029 431 ISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDL 484 (693)
Q Consensus 431 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 484 (693)
++++++ +..+++|+.|++++|+++++++ +..+++|+.|++++|+++..+.
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 666554 5666666666666666666653 4566666667776666665443
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.5e-21 Score=190.24 Aligned_cols=175 Identities=26% Similarity=0.431 Sum_probs=119.4
Q ss_pred ccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029 77 INTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156 (693)
Q Consensus 77 L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 156 (693)
.++++++++ .++.++.. +. +++++|++++| .++.+++..|.++++|++|++++|.++++++..|.++++|++|+
T Consensus 16 ~~~l~~~~~--~l~~~p~~-~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 16 KKEVDCQGK--SLDSVPSG-IP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GTEEECTTC--CCSSCCSC-CC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CeEEecCCC--CccccCCC-CC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 456666666 66666632 22 46677777777 77776666677777777777777777766666666777777777
Q ss_pred cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236 (693)
Q Consensus 157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 236 (693)
+++|.++.+++..|..+++|++|++++|+++++++..|..+++|++|++++|.++.+++..|..+++|++|++++|.++.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 77777777666666677777777777777776666666667777777777777776666666666777777777777666
Q ss_pred CChhhhhcccCceEEEEecCC
Q psy8029 237 FPKDLFAEMKYLQVIKISYHK 257 (693)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~n~ 257 (693)
+++..|..+++|++|++++|+
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCC
T ss_pred cCHHHHhCCCCCCEEEeeCCc
Confidence 666656666666666666665
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.3e-21 Score=200.19 Aligned_cols=198 Identities=22% Similarity=0.350 Sum_probs=118.3
Q ss_pred CCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCC
Q psy8029 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL 176 (693)
Q Consensus 97 ~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 176 (693)
+..+++|++|++++| .++.++. +..+++|++|++++|.++++++ |..+++|++|++++|.+++++ .+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTC
T ss_pred HHHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCC
Confidence 344556666666666 6655542 5556666666666666655554 556666666666666665553 35566666
Q ss_pred CEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecC
Q psy8029 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256 (693)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 256 (693)
++|++++|+++++++ +..+++|++|++++|.++.+++ +..+++|+.|++++|.++.++. +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 666666666665543 5566666666666666665554 5556666666666666665544 556666666666666
Q ss_pred CCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCCh
Q psy8029 257 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 314 (693)
Q Consensus 257 ~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~ 314 (693)
. +..++. +..+++|++|++++|.+.++++ +..+++|+.|++++| .+...|.
T Consensus 184 ~--l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 184 K--ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp C--CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE-EEECCCE
T ss_pred c--cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC-eeecCCe
Confidence 5 334443 4556666666666666666553 456666666666666 5555443
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=1.2e-20 Score=184.19 Aligned_cols=197 Identities=19% Similarity=0.219 Sum_probs=149.5
Q ss_pred CceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEEC
Q psy8029 347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426 (693)
Q Consensus 347 L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~L 426 (693)
-+.++.++++++.+|.. -.++|++|+|++|.++++.+..|..+++|++|++++|.++.. ....|..+++|++|+|
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i----~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL----PVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc----ChhhcccCCCcCEEEC
Confidence 45677777777776653 236788888888888888888888888899999988888755 2456788889999999
Q ss_pred CCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCcccccccc
Q psy8029 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARS 506 (693)
Q Consensus 427 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 506 (693)
++|+++++++..|..+++|+.|+|++|+|+.++.. +..+++|+.|++++|+|+.++...+..+ ++
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~ 160 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRL--------------SS 160 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTC--------------TT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCC--------------CC
Confidence 99999988888888899999999999999987655 5788899999999999998877666554 45
Q ss_pred CcEEEcCCCcccccCC-cHHHHHHHhcccccce--eeeeeeccCceeecCCCCccccccCC
Q psy8029 507 ANIVILNDNPIACNCS-NYDLIRFVSKKMTKTV--YQMLELVTDNLECFGNAGVGINSVRP 564 (693)
Q Consensus 507 l~~l~l~~Np~~c~C~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~c~~~~~~~~~~l~~ 564 (693)
++.+++++|||.|+|. ..|+..|+........ ......+.....|..+ +..+.++..
T Consensus 161 L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~-~~~~~~~~~ 220 (229)
T 3e6j_A 161 LTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT-NTPVRAVTE 220 (229)
T ss_dssp CCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT-CCBGGGCCG
T ss_pred CCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCC-Cccceeccc
Confidence 8899999999999996 8899999987532211 1111234556777765 344444443
No 94
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.86 E-value=1.9e-20 Score=197.78 Aligned_cols=263 Identities=14% Similarity=0.238 Sum_probs=144.0
Q ss_pred cccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEE
Q psy8029 100 LHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179 (693)
Q Consensus 100 l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 179 (693)
+..++.+.+.. .++.|+..+|.++ +|+.+.+..+ ++.++..+|.++ +|+.+.+.. .+..+...+|.+|.+|+.+
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 34555555554 3555555555553 4555555443 555555555553 455555554 4555555555555555555
Q ss_pred EccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCc
Q psy8029 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS 259 (693)
Q Consensus 180 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 259 (693)
++++|+++.++..+|. +.+|+.+.+.. .++.+...+|.++++|+.+.+..+ ++.++..+|.+ .+|+.+.+..+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~--- 258 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG--- 258 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT---
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC---
Confidence 5555555555555554 35555555552 255555555555555555555543 45555555555 45555555332
Q ss_pred ccccCccccCCCCCccEEEcCCCCCc-----ccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC
Q psy8029 260 LKELPSGLFANLPLLNTVILGESSIA-----ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334 (693)
Q Consensus 260 ~~~i~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~ 334 (693)
+..++..+|.++++|+.+.+.++.+. .++..+|.+|++|+.+.+.. .+..++..+|.+|++|+.+.+..+ ++
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 34555555555666666655554443 45555666666666666652 455566666666666666666433 55
Q ss_pred CCChhhhccCccCceEeccCCcCccccCc--cCC-CCCCeEeCCCCcc
Q psy8029 335 YLPENLFESLKELYTLNLKNNQLENITSL--VGL-SGLNSLDLSWNQL 379 (693)
Q Consensus 335 ~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l-~~L~~L~Ls~n~l 379 (693)
.++..+|.++ +|+.+.+.+|.+..++.. .++ .+++.|++..+.+
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 5555556666 666666666655554433 333 2555666655543
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=2.6e-22 Score=210.68 Aligned_cols=255 Identities=18% Similarity=0.214 Sum_probs=126.5
Q ss_pred EEccCCcCcccccccccCCCCCCcEEEeeCCcccccCc----ccCCCCC-CCcEEEcCCCCCCccChhhhCCC-----CC
Q psy8029 106 ILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYS----GVFQYVP-KLQVLDLGSNDVAYMDPEIFKNL-----TS 175 (693)
Q Consensus 106 L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~ 175 (693)
+++++| .+++..+..+...++|++|++++|.++..+. .+|..++ +|++|++++|.+....+..+..+ ++
T Consensus 3 ~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 455555 5555555544444456666666666655544 4455555 56666666666655555444443 56
Q ss_pred CCEEEccCCCCCCCChhh----cCCC-CCCcEEECcCCCCCcCCCCcC----CC-CCCCcEEEcCCCccccCChhhhhcc
Q psy8029 176 LRILNLDHNQLINLTRAI----FNNV-PNLRSLDISGNNISILPSGVF----SD-LRKLQTFYANSNRFQMFPKDLFAEM 245 (693)
Q Consensus 176 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~i~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~~~~~~ 245 (693)
|++|++++|++++..... +..+ ++|++|++++|.++..+...+ .. .++|++|++++|.++......+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~- 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ- 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH-
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH-
Confidence 666666666665544432 2222 555555555555554443222 22 235555555555555333222110
Q ss_pred cCceEEEEecCCCcccccCccccCCCC-CccEEEcCCCCCcccCccc----ccCC-CCccEEEecCCCCCCc-----CCh
Q psy8029 246 KYLQVIKISYHKDSLKELPSGLFANLP-LLNTVILGESSIAELPSDL----FWNS-TNITNIVLTGHKKLTS-----LPS 314 (693)
Q Consensus 246 ~~L~~L~l~~n~~~~~~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~l~~n~~l~~-----l~~ 314 (693)
. +...+ +|++|++++|.++...... +..+ ++|+.|++++| .++. ++.
T Consensus 161 --------------------~-l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~ 218 (362)
T 3goz_A 161 --------------------I-LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAY 218 (362)
T ss_dssp --------------------H-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHH
T ss_pred --------------------H-HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHH
Confidence 0 11121 3444444444443333211 1222 34555555554 4443 222
Q ss_pred hhhcCCCCCcEEEccCCCCCCCCh----hhhccCccCceEeccCCcCccccC---------ccCCCCCCeEeCCCCcccc
Q psy8029 315 TLFRDCKKLVKLELQRNKLKYLPE----NLFESLKELYTLNLKNNQLENITS---------LVGLSGLNSLDLSWNQLEQ 381 (693)
Q Consensus 315 ~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~Ls~n~l~~l~~---------~~~l~~L~~L~Ls~n~l~~ 381 (693)
.+....++|++|++++|.++..+. ..+..+++|+.|++++|.+..+.. ...+++|++|++++|.+.+
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 222223466666666666655443 223445666666666666433221 1456677788888888776
Q ss_pred ccc
Q psy8029 382 INL 384 (693)
Q Consensus 382 ~~~ 384 (693)
..+
T Consensus 299 ~~~ 301 (362)
T 3goz_A 299 SHS 301 (362)
T ss_dssp GGC
T ss_pred cch
Confidence 544
No 96
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.85 E-value=2.4e-20 Score=198.01 Aligned_cols=317 Identities=20% Similarity=0.283 Sum_probs=202.5
Q ss_pred CccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccCh
Q psy8029 88 NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167 (693)
Q Consensus 88 ~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 167 (693)
.++.|...+|.+|.+|+.+.+.. .++.|+..+|.+|++|+.+++..+ ++.++..+|.++.+|+.+.+..+ +..+..
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 56788888999999999999975 588898889999999999998754 77888888999999988877654 677777
Q ss_pred hhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccC
Q psy8029 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247 (693)
Q Consensus 168 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 247 (693)
.+|.++..++.... ..+..+...+|.++++|+.+.+..+ +..+...+|.++++|+.+.+..+ ++.+...+|.++..
T Consensus 134 ~aF~~~~~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIP--EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECC--TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccccccC--ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 77887765443322 2344556677888888888888654 56677777888888888888765 66777777777777
Q ss_pred ceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEE
Q psy8029 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 327 (693)
Q Consensus 248 L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~ 327 (693)
|+.+.+..+. ..+...+ .....|+.+.+.. .+..+...+|.++..++.+.+..+ ...++...|..+..++.+.
T Consensus 210 L~~i~~~~~~---~~i~~~~-~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 210 LENMEFPNSL---YYLGDFA-LSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp CCBCCCCTTC---CEECTTT-TTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEE
T ss_pred cceeecCCCc---eEeehhh-cccCCCceEEECC-CceecccccccccccceeEEcCCC--cceeeccccccccccceec
Confidence 7777666553 2333332 2345666666643 345556666666666776666553 4455555566666666666
Q ss_pred ccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccc
Q psy8029 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407 (693)
Q Consensus 328 l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 407 (693)
..... ++...|..+.+|+.+.+..+ +..+...+|.++.+|+.+++..+ ++..
T Consensus 283 ~~~~~---i~~~~F~~~~~L~~i~l~~~-----------------------i~~I~~~aF~~c~~L~~i~lp~~-v~~I- 334 (394)
T 4fs7_A 283 YGSVI---VPEKTFYGCSSLTEVKLLDS-----------------------VKFIGEEAFESCTSLVSIDLPYL-VEEI- 334 (394)
T ss_dssp ECSSE---ECTTTTTTCTTCCEEEECTT-----------------------CCEECTTTTTTCTTCCEECCCTT-CCEE-
T ss_pred cCcee---eccccccccccccccccccc-----------------------cceechhhhcCCCCCCEEEeCCc-ccEE-
Confidence 55432 34444555555555555432 33444444555555555555422 3322
Q ss_pred cccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECC
Q psy8029 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451 (693)
Q Consensus 408 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 451 (693)
+..+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+++.
T Consensus 335 ---~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 335 ---GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp ---CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ---hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 2444555555555555443 444444455555555555554
No 97
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.85 E-value=8.5e-21 Score=179.66 Aligned_cols=170 Identities=24% Similarity=0.256 Sum_probs=117.4
Q ss_pred eEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEEC
Q psy8029 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450 (693)
Q Consensus 371 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 450 (693)
.+++++|.++.++...+ ++|++|++++|.++.. +..|..+++|++|+|++|.|+++.+..|.++++|+.|+|
T Consensus 14 ~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~~i-----p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTLV-----PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp EEECTTSCCSSCCSCCC---TTCCEEECCSSCCCSC-----CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEEcCCCCCCcCCCCCC---CCCCEEECCCCcCchh-----HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 44444454444433221 3556666666665532 345566667777777777777776666777777777777
Q ss_pred CCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHH
Q psy8029 451 RHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFV 530 (693)
Q Consensus 451 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~ 530 (693)
++|+|+++++..|..+++|+.|+|++|+|+.++...+..+ ++++.+++++|||.|+|++.||..|+
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~L~~N~~~C~c~l~~l~~~~ 151 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL--------------SALSHLAIGANPLYCDCNMQWLSDWV 151 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC--------------TTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcC--------------ccccEEEeCCCCeecCCcCHHHHHHH
Confidence 7777777777667777777777777777777666655544 45789999999999999999999999
Q ss_pred hcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccC
Q psy8029 531 SKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDT 571 (693)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~ 571 (693)
.... .....+.|..| +|..+.+++...+.|..
T Consensus 152 ~~~~---------~~~~~~~C~~P~~l~g~~l~~~~~~~~~~~~ 186 (193)
T 2wfh_A 152 KSEY---------KEPGIARCAGPGEMADKLLLTTPSKKFTCAA 186 (193)
T ss_dssp HHSS---------CCCSCCBEEESGGGTTCBTTTSCGGGCCC--
T ss_pred Hhcc---------CCCCCcCcCCchHHCCCCcccCChHHeeehh
Confidence 8742 12346789988 88889999887776654
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=3.7e-22 Score=209.53 Aligned_cols=253 Identities=20% Similarity=0.218 Sum_probs=157.5
Q ss_pred EEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccCh----hhhCCCC-CCCEEEccCCCCCCCChhhcCCC-----CCC
Q psy8029 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP----EIFKNLT-SLRILNLDHNQLINLTRAIFNNV-----PNL 200 (693)
Q Consensus 131 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L 200 (693)
+++++|.+++..+..+...++|++|++++|.++...+ .+|..++ +|++|++++|++++.....+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4455555555433333444446666666666655555 4455555 56666666665555544433332 455
Q ss_pred cEEECcCCCCCcCCCCc----CCCC-CCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCC-CCCc
Q psy8029 201 RSLDISGNNISILPSGV----FSDL-RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN-LPLL 274 (693)
Q Consensus 201 ~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~-l~~L 274 (693)
++|++++|.++...... +..+ ++|++|++++|.++..+...+. ..+.. .++|
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~----------------------~~l~~~~~~L 140 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK----------------------QAFSNLPASI 140 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH----------------------HHHTTSCTTC
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH----------------------HHHHhCCCce
Confidence 55555555544433321 1122 3444444444444433332221 11333 3578
Q ss_pred cEEEcCCCCCcccCccc----ccCCC-CccEEEecCCCCCCcCChh----hhcCC-CCCcEEEccCCCCCC-----CChh
Q psy8029 275 NTVILGESSIAELPSDL----FWNST-NITNIVLTGHKKLTSLPST----LFRDC-KKLVKLELQRNKLKY-----LPEN 339 (693)
Q Consensus 275 ~~L~l~~n~l~~~~~~~----~~~~~-~L~~L~l~~n~~l~~l~~~----~~~~~-~~L~~L~l~~n~l~~-----~~~~ 339 (693)
++|++++|.++...... +...+ +|++|++++| .++..... .+..+ ++|++|++++|.++. ++..
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence 88888888877543322 23444 9999999999 88877653 34455 599999999999987 3333
Q ss_pred hhccCccCceEeccCCcCccccC------ccCCCCCCeEeCCCCccccccc-------cccCCCCCCcEEECCCCcCccc
Q psy8029 340 LFESLKELYTLNLKNNQLENITS------LVGLSGLNSLDLSWNQLEQINL-------IAFDGLSSLNTVDLSHNLLTFD 406 (693)
Q Consensus 340 ~~~~~~~L~~L~Ls~n~l~~l~~------~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~ 406 (693)
.....++|++|++++|++++.+. ...+++|++|++++|.+.++.+ ..+..+++|+.|++++|.+...
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 32335699999999999988654 2678899999999999665543 3677889999999999999854
No 99
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.85 E-value=5.7e-20 Score=194.09 Aligned_cols=260 Identities=16% Similarity=0.300 Sum_probs=122.9
Q ss_pred CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEEC
Q psy8029 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205 (693)
Q Consensus 126 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 205 (693)
..++.+.+. +.++.|+..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+...+|.+|++|+.+++
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 444444443 23444555555443 4555555443 444444445442 355555543 444444444555555555555
Q ss_pred cCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCc
Q psy8029 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285 (693)
Q Consensus 206 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~ 285 (693)
..|.++.++..+|. +.+|+.+.+..+ ++.|+..+|.++++|+.+.+..+ +..++..+|.+ .+|+.+.+ .+.++
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~---l~~I~~~aF~~-~~L~~i~l-p~~i~ 260 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN---VSTIGQEAFRE-SGITTVKL-PNGVT 260 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT---CCEECTTTTTT-CCCSEEEE-ETTCC
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC---ccCcccccccc-CCccEEEe-CCCcc
Confidence 55555555554444 345555555422 44455555555555555555443 33444444444 34555555 23344
Q ss_pred ccCcccccCCCCccEEEecCCCCCC-----cCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccc
Q psy8029 286 ELPSDLFWNSTNITNIVLTGHKKLT-----SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360 (693)
Q Consensus 286 ~~~~~~~~~~~~L~~L~l~~n~~l~-----~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l 360 (693)
.++..+|.+|++|+.+.+.++ .+. .++..+|.+|++|+.+++. +.++.++..+|.+|.+|+.+.+..+ ++.+
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred EEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 444455555555555555443 222 3444445555555555554 2344455455555555555555332 4333
Q ss_pred cCc--cCCCCCCeEeCCCCccccccccccCCCC-CCcEEECCCC
Q psy8029 361 TSL--VGLSGLNSLDLSWNQLEQINLIAFDGLS-SLNTVDLSHN 401 (693)
Q Consensus 361 ~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n 401 (693)
+.. .++ +|+.+++++|.+..+...+|.+++ .++.|.+..+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 322 344 455555555555444444444442 4444544443
No 100
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.84 E-value=2.3e-20 Score=176.71 Aligned_cols=174 Identities=21% Similarity=0.231 Sum_probs=133.8
Q ss_pred CeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEE
Q psy8029 370 NSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELD 449 (693)
Q Consensus 370 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 449 (693)
+++++++|.++.++...+ .+|++|++++|.++... ....+..+++|++|+|++|.++++.+..|.++++|+.|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRIS---SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBC---CSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccC---CccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 456666666655544222 26677777777776542 112467788888888888888888888888888888888
Q ss_pred CCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHH
Q psy8029 450 LRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRF 529 (693)
Q Consensus 450 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~ 529 (693)
|++|+|+++++..+..+++|+.|++++|+|+++.+..+..+ ++++.+++++|||.|+|++.|+..|
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~L~~N~l~c~c~l~~~~~~ 150 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL--------------NSLTSLNLASNPFNCNCHLAWFAEW 150 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC--------------TTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC--------------CCCCEEEeCCCCccCcCcchHHHHH
Confidence 98888888888878888889999999999988877766554 4588999999999999999999999
Q ss_pred HhcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccCC
Q psy8029 530 VSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDTK 572 (693)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~~ 572 (693)
++... ...+...|..| +|..+.+++.+++.|..+
T Consensus 151 l~~~~---------~~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 151 LRKKS---------LNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp HHHHC---------CSGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred HHHcC---------CCCCCCCCCCChHHcCCChhhCcHhhcCcCCC
Confidence 87641 23346789888 888999999999988643
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.3e-21 Score=196.83 Aligned_cols=227 Identities=18% Similarity=0.118 Sum_probs=139.2
Q ss_pred cccEEEccCCcCccccccc---ccCCCCCCcEEEeeCCcccccCcccC--CCCCCCcEEEcCCCCCCccCh----hhhCC
Q psy8029 102 FVKHILLSHNKEITGLHKD---IFKGTPQLESLNLRGNSITELYSGVF--QYVPKLQVLDLGSNDVAYMDP----EIFKN 172 (693)
Q Consensus 102 ~L~~L~Ls~n~~i~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~ 172 (693)
.++.+.+.++ .++..... .+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4677777776 55432110 12234568888888888876555555 778888888888888775322 34456
Q ss_pred CCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCc---CCC-CcCCCCCCCcEEEcCCCccccCChh---hhhcc
Q psy8029 173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI---LPS-GVFSDLRKLQTFYANSNRFQMFPKD---LFAEM 245 (693)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~---~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~ 245 (693)
+++|++|++++|+++++.+..|+.+++|++|++++|++.+ ++. ..+..+++|++|++++|.++.++.. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 7888888888888888777777888888888888887653 222 2235677888888888877654432 34555
Q ss_pred cCceEEEEecCCCccccc-CccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCc
Q psy8029 246 KYLQVIKISYHKDSLKEL-PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 324 (693)
Q Consensus 246 ~~L~~L~l~~n~~~~~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~ 324 (693)
++|++|++++|++ ..+ |+. +..+ ..+++|++|++++| .++.+|..++ ++|+
T Consensus 224 ~~L~~L~Ls~N~l--~~~~p~~-~~~~---------------------~~~~~L~~L~Ls~N-~l~~lp~~~~---~~L~ 275 (310)
T 4glp_A 224 VQPHSLDLSHNSL--RATVNPS-APRC---------------------MWSSALNSLNLSFA-GLEQVPKGLP---AKLR 275 (310)
T ss_dssp CCCSSEECTTSCC--CCCCCSC-CSSC---------------------CCCTTCCCEECCSS-CCCSCCSCCC---SCCS
T ss_pred CCCCEEECCCCCC--Cccchhh-HHhc---------------------cCcCcCCEEECCCC-CCCchhhhhc---CCCC
Confidence 6666666666662 232 222 2222 01134455555554 4444444332 4566
Q ss_pred EEEccCCCCCCCChhhhccCccCceEeccCCcCcc
Q psy8029 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 359 (693)
Q Consensus 325 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 359 (693)
+|++++|+++.+|. +..+++|+.|++++|++++
T Consensus 276 ~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 276 VLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred EEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence 66666666665544 4556666666666666543
No 102
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1.2e-21 Score=202.75 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=43.0
Q ss_pred CCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCc-eEeccCCcCccccCc--cCCCCCCe
Q psy8029 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY-TLNLKNNQLENITSL--VGLSGLNS 371 (693)
Q Consensus 295 ~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~Ls~n~l~~l~~~--~~l~~L~~ 371 (693)
+++|+.+++++| .++.++..+|.+|++|+++++++| ++.++..+|.++.+|+ .+++.+ .++.++.. .+|++|+.
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 344444444444 444444444444444444444444 4444444444444444 444443 33333222 33333444
Q ss_pred EeCCCCccccccccccCCCCCCcEE
Q psy8029 372 LDLSWNQLEQINLIAFDGLSSLNTV 396 (693)
Q Consensus 372 L~Ls~n~l~~~~~~~~~~l~~L~~L 396 (693)
+++++|.++.+...+|.++++|+.+
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEeCCCccCccchhhhcCCcchhhh
Confidence 4444444444444444444444444
No 103
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=6.6e-21 Score=197.14 Aligned_cols=217 Identities=13% Similarity=0.164 Sum_probs=102.2
Q ss_pred CCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCC----CCCcCCCCcCCCCCCC
Q psy8029 149 VPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN----NISILPSGVFSDLRKL 224 (693)
Q Consensus 149 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----~i~~~~~~~~~~l~~L 224 (693)
|++|+.|++.+ .++.+.+.+|.+|++|+.+++++|.+..+.+.+|.++.++..+....+ ....+...+|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55555555555 455555555555555555555555555555555555555554444432 1223334444445555
Q ss_pred c-EEEcCCCccccCChhhhhc---ccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccE
Q psy8029 225 Q-TFYANSNRFQMFPKDLFAE---MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300 (693)
Q Consensus 225 ~-~L~l~~n~l~~~~~~~~~~---~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 300 (693)
+ .+.+... ..++...+.. ..+++.+.+.++-.. .-.......+++|+.+++++|.++.++..+|.+|.+|+.
T Consensus 179 ~~~i~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAM--GKLEDEIMKAGLQPRDINFLTIEGKLDN--ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTT--CCHHHHHHHTTCCGGGCSEEEEEECCCH--HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ceeEEecCC--CcHHHHHhhcccCccccceEEEeeeecH--HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 4 3333221 1122222211 233344444332100 000001112455555555555555555555555555555
Q ss_pred EEecCCCCCCcCChhhhcCCCCCc-EEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEe
Q psy8029 301 IVLTGHKKLTSLPSTLFRDCKKLV-KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLD 373 (693)
Q Consensus 301 L~l~~n~~l~~l~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~ 373 (693)
+++.+| +..++..+|.+|++|+ .+++.+ .++.++..+|.+|++|+.++++.|+++.++.. .++++|+.++
T Consensus 255 l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 555553 5555555555555555 555555 45555555555555555555555555555443 4555555554
No 104
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.83 E-value=1.5e-19 Score=191.77 Aligned_cols=306 Identities=18% Similarity=0.292 Sum_probs=240.2
Q ss_pred hcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCC
Q psy8029 71 KLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVP 150 (693)
Q Consensus 71 ~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 150 (693)
+.+++.|+.+.|.. .++.|+..+|.+|.+|+.+++.. .++.++..+|.++++|+.+.+.. .++.+...+|.++.
T Consensus 67 F~~c~~L~~i~lp~---~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~-~l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS---TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL-MLKSIGVEAFKGCD 140 (394)
T ss_dssp TTTCTTEEEEECCT---TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT-TCCEECTTTTTTCC
T ss_pred hhCCCCceEEEeCC---CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccC-ceeeecceeeeccc
Confidence 45788999999953 79999999999999999999986 48999999999999999988875 47788889999887
Q ss_pred CCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcC
Q psy8029 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230 (693)
Q Consensus 151 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 230 (693)
.++..... .+..+...+|.++.+|+.+.+.++ +..+...+|.++.+|+.+++..+ ++.+...+|.++..|+.+.+.
T Consensus 141 ~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 65544433 345677788999999999999865 56788888999999999999876 788889999999999999887
Q ss_pred CCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC
Q psy8029 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310 (693)
Q Consensus 231 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~ 310 (693)
.+. ..+....+ ....|+.+.+... ...+...+|..+..++.+.+..+ ...+....|..+..++.+.....
T Consensus 217 ~~~-~~i~~~~~-~~~~l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~---- 286 (394)
T 4fs7_A 217 NSL-YYLGDFAL-SKTGVKNIIIPDS---FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSV---- 286 (394)
T ss_dssp TTC-CEECTTTT-TTCCCCEEEECTT---CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSS----
T ss_pred CCc-eEeehhhc-ccCCCceEEECCC---ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCce----
Confidence 754 33444433 4578999988755 45778888999999999999765 55678888999999999988654
Q ss_pred cCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccC
Q psy8029 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFD 388 (693)
Q Consensus 311 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~ 388 (693)
.++..+|..+.+|+++.+.++ ++.++..+|.++.+|+.+++..+ ++.++.. .+|.+|+.+++..+ ++.+...+|.
T Consensus 287 ~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 287 IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 467778999999999999865 88899889999999999888643 5554433 45555555555544 5555555555
Q ss_pred CCCCCcEEECC
Q psy8029 389 GLSSLNTVDLS 399 (693)
Q Consensus 389 ~l~~L~~L~L~ 399 (693)
++.+|+.+++.
T Consensus 364 ~C~~L~~i~lp 374 (394)
T 4fs7_A 364 GCINLKKVELP 374 (394)
T ss_dssp TCTTCCEEEEE
T ss_pred CCCCCCEEEEC
Confidence 55555555554
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=4.5e-20 Score=202.52 Aligned_cols=221 Identities=24% Similarity=0.257 Sum_probs=147.6
Q ss_pred CccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEec
Q psy8029 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL 352 (693)
Q Consensus 273 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 352 (693)
+++.|++++|.++++|..++ ++|+.|++++| .++.+| ..+++|++|++++|.++.+|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQN-ALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 67777777777777665543 56777777777 677776 235777888888887777776 333 7788888
Q ss_pred cCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC
Q psy8029 353 KNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432 (693)
Q Consensus 353 s~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 432 (693)
++|+++++|. .+++|++|++++|.+++++. .+++|++|++++|.++.. +. +. ++|++|+|++|.|+
T Consensus 128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~l-----p~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 128 DNNQLTMLPE--LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFL-----PE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-----CC-CC--TTCCEEECCSSCCS
T ss_pred CCCcCCCCCC--cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCc-----ch-hh--CCCCEEECcCCCCC
Confidence 8888877776 67788888888888877654 467788888888888754 22 33 78888888888888
Q ss_pred cCChhHHhcCCCC-------cEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccc
Q psy8029 433 SLFDDWISSMTSL-------KELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVAR 505 (693)
Q Consensus 433 ~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 505 (693)
.++. +.. +| +.|+|++|+|+.++...+ .+++|+.|+|++|++++..+..+..+........ +
T Consensus 194 ~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~------~ 262 (571)
T 3cvr_A 194 SLPA--VPV--RNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG------P 262 (571)
T ss_dssp SCCC--CC----------CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---------C
T ss_pred chhh--HHH--hhhcccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccC------C
Confidence 7655 333 56 888898888888877644 4888889999999988877777766543211000 0
Q ss_pred cCcEEEcCC-------CcccccCCcHHHHHHHhc
Q psy8029 506 SANIVILND-------NPIACNCSNYDLIRFVSK 532 (693)
Q Consensus 506 ~l~~l~l~~-------Np~~c~C~~~~~~~~~~~ 532 (693)
.+ .+++++ || .|+|...|+..+.++
T Consensus 263 ~~-~~~l~~~~~~~~~~p-~~~~~~~Wl~~~~~~ 294 (571)
T 3cvr_A 263 RI-YFSMSDGQQNTLHRP-LADAVTAWFPENKQS 294 (571)
T ss_dssp EE-ECCC----------C-CSHHHHTTCC-----
T ss_pred ee-EEeeccccccccccc-chhhHHHHhhhhccc
Confidence 11 223333 55 699988888665443
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.1e-20 Score=196.43 Aligned_cols=247 Identities=14% Similarity=0.151 Sum_probs=139.5
Q ss_pred ccEEEccCCcCcccccccccCCC--CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCcc-ChhhhCCCCCCCEE
Q psy8029 103 VKHILLSHNKEITGLHKDIFKGT--PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYM-DPEIFKNLTSLRIL 179 (693)
Q Consensus 103 L~~L~Ls~n~~i~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 179 (693)
++.++++++ .+. +..+..+ ++++.|++++|.+.+.+... ..+++|++|++++|.+... .+..+..+++|++|
T Consensus 49 ~~~l~l~~~-~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGK-NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTC-BCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccc-cCC---HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 566666666 544 2233444 56677777777666655443 3567777777777766543 34456667777777
Q ss_pred EccCCCCCCCChhhcCCCCCCcEEECcCC-CCCcC-CCCcCCCCCCCcEEEcCCC-ccccC-Chhhhhccc-CceEEEEe
Q psy8029 180 NLDHNQLINLTRAIFNNVPNLRSLDISGN-NISIL-PSGVFSDLRKLQTFYANSN-RFQMF-PKDLFAEMK-YLQVIKIS 254 (693)
Q Consensus 180 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~l~ 254 (693)
++++|++++..+..++.+++|++|++++| .++.. .+..+..+++|++|++++| .++.. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77777666555555666777777777776 45531 1223455667777777777 66532 233355666 77777777
Q ss_pred cCC--CcccccCccccCCCCCccEEEcCCCC-CcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCC
Q psy8029 255 YHK--DSLKELPSGLFANLPLLNTVILGESS-IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331 (693)
Q Consensus 255 ~n~--~~~~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n 331 (693)
+|. +....++. .+..+++|+.|++++|. ++......+..+++|+.|++++|..+.......+..+++|++|++++|
T Consensus 204 ~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 763 11122332 24556677777777766 444333345566667777776663222211123455666777777666
Q ss_pred CCCCCChhhhccC-ccCceEeccCCcCcc
Q psy8029 332 KLKYLPENLFESL-KELYTLNLKNNQLEN 359 (693)
Q Consensus 332 ~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~ 359 (693)
++...+..+ ..++.|++++|++++
T Consensus 283 ----i~~~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 283 ----VPDGTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp ----SCTTCHHHHHHHSTTSEESCCCSCC
T ss_pred ----cCHHHHHHHHhhCcceEEecccCcc
Confidence 222222222 224555555555555
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=7.9e-22 Score=209.08 Aligned_cols=237 Identities=20% Similarity=0.183 Sum_probs=103.3
Q ss_pred cCCCcccccEEEccCCcCccccccc----ccCCCCCCcEEEeeCCccccc----Ccc------cCCCCCCCcEEEcCCCC
Q psy8029 96 YFDGLHFVKHILLSHNKEITGLHKD----IFKGTPQLESLNLRGNSITEL----YSG------VFQYVPKLQVLDLGSND 161 (693)
Q Consensus 96 ~~~~l~~L~~L~Ls~n~~i~~~~~~----~~~~l~~L~~L~L~~n~i~~~----~~~------~~~~l~~L~~L~Ls~n~ 161 (693)
.+..+++|++|+|++| .++..... .+..+++|++|+|++|.+..+ |.. +|..+++|++|+|++|.
T Consensus 27 ~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 3444555556666655 55543222 244555566666655433321 111 12455556666666555
Q ss_pred CCc----cChhhhCCCCCCCEEEccCCCCCCCChhhcC----CC---------CCCcEEECcCCCCCcCCC----CcCCC
Q psy8029 162 VAY----MDPEIFKNLTSLRILNLDHNQLINLTRAIFN----NV---------PNLRSLDISGNNISILPS----GVFSD 220 (693)
Q Consensus 162 l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~i~~~~~----~~~~~ 220 (693)
+.. ..+..+..+++|++|+|++|.++......+. .+ ++|++|++++|.++.... ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 554 1233445555666666666555433222222 12 455555555555541110 12334
Q ss_pred CCCCcEEEcCCCcccc-----CChhhhhcccCceEEEEecCCCcc---cccCccccCCCCCccEEEcCCCCCcccCc---
Q psy8029 221 LRKLQTFYANSNRFQM-----FPKDLFAEMKYLQVIKISYHKDSL---KELPSGLFANLPLLNTVILGESSIAELPS--- 289 (693)
Q Consensus 221 l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~---~~i~~~~~~~l~~L~~L~l~~n~l~~~~~--- 289 (693)
+++|++|++++|.++. +.+..+..+++|++|++++|.+.. ..++. .+..+++|+.|++++|.++....
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHH
Confidence 4455555555554441 111123344444444444444210 12222 23444455555555554443210
Q ss_pred -ccc--cCCCCccEEEecCCCCCCc-----CChhhhcCCCCCcEEEccCCCCCC
Q psy8029 290 -DLF--WNSTNITNIVLTGHKKLTS-----LPSTLFRDCKKLVKLELQRNKLKY 335 (693)
Q Consensus 290 -~~~--~~~~~L~~L~l~~n~~l~~-----l~~~~~~~~~~L~~L~l~~n~l~~ 335 (693)
..+ ..+++|+.|++++| .++. ++..++.++++|++|++++|.++.
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 111 11444444444444 3433 333333334444444444444443
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=2.9e-21 Score=204.75 Aligned_cols=139 Identities=26% Similarity=0.302 Sum_probs=66.8
Q ss_pred CCCcEEEccCCCCCC--CCh--hhhccCccCceEeccCCcCcc------cc-CccCCCCCCeEeCCCCccc----ccccc
Q psy8029 321 KKLVKLELQRNKLKY--LPE--NLFESLKELYTLNLKNNQLEN------IT-SLVGLSGLNSLDLSWNQLE----QINLI 385 (693)
Q Consensus 321 ~~L~~L~l~~n~l~~--~~~--~~~~~~~~L~~L~Ls~n~l~~------l~-~~~~l~~L~~L~Ls~n~l~----~~~~~ 385 (693)
++|++|++++|.++. ++. ..+..+++|++|++++|+++. ++ ....+++|++|+|++|.++ ...+.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 566666666666542 221 234455566666666665552 22 2244555566666666554 22233
Q ss_pred ccCCCCCCcEEECCCCcCcccccccCCCCc--cCCCCCcEEECCCCCCCc----CChhHH-hcCCCCcEEECCCCCCccC
Q psy8029 386 AFDGLSSLNTVDLSHNLLTFDEYQYGYSPL--KQCVNLETINLSYNRISS----LFDDWI-SSMTSLKELDLRHNNFSFI 458 (693)
Q Consensus 386 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~~ 458 (693)
.+..+++|++|+|++|.++..+....+..+ ..+++|++|+|++|.+++ ..+..+ .++++|+.|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 445555555555555555533111111222 224555555555555554 122223 3455555555555555544
Q ss_pred C
Q psy8029 459 P 459 (693)
Q Consensus 459 ~ 459 (693)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 3
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.1e-19 Score=170.72 Aligned_cols=174 Identities=24% Similarity=0.381 Sum_probs=125.5
Q ss_pred cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEc
Q psy8029 78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDL 157 (693)
Q Consensus 78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 157 (693)
+.++.+++ .++.++... .++|++|++++| .++.++...|.++++|++|++++|+++.++...|..+++|++|++
T Consensus 10 ~~v~c~~~--~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYSQ--GRTSVPTGI---PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCSS--CCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCC--CccCCCCCC---CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 45566665 666666322 357778888888 777777777777788888888888877777777777788888888
Q ss_pred CCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccC
Q psy8029 158 GSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMF 237 (693)
Q Consensus 158 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 237 (693)
++|.++.+++..|..+++|++|++++|+++++++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.+..
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 8887777777777777888888888887777777767777788888888887777777777777777777777776542
Q ss_pred ChhhhhcccCceEEEEecCCCcccccCc
Q psy8029 238 PKDLFAEMKYLQVIKISYHKDSLKELPS 265 (693)
Q Consensus 238 ~~~~~~~~~~L~~L~l~~n~~~~~~i~~ 265 (693)
.++.|+.|+++.|.+.+ .+|+
T Consensus 163 ------~~~~l~~L~~~~n~~~g-~ip~ 183 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSG-VVRN 183 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTT-TBBC
T ss_pred ------CCCCHHHHHHHHHhCCc-eeec
Confidence 34566666666665433 4444
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.8e-19 Score=170.98 Aligned_cols=170 Identities=27% Similarity=0.388 Sum_probs=139.0
Q ss_pred cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccC
Q psy8029 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183 (693)
Q Consensus 104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 183 (693)
+.++++++ +++.++... .++|++|++++|.++.++...|..+++|++|++++|.++.+++..|..+++|++|++++
T Consensus 10 ~~v~c~~~-~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCC-CccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 57788888 888887654 45789999999998888888888889999999999988888888888889999999999
Q ss_pred CCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccccc
Q psy8029 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKEL 263 (693)
Q Consensus 184 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i 263 (693)
|+++++++..|..+++|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|++|++++|.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~----- 160 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW----- 160 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-----
Confidence 988888887788888999999999988888888788888888888888888888877777888888888888762
Q ss_pred CccccCCCCCccEEEcCCCCCcc
Q psy8029 264 PSGLFANLPLLNTVILGESSIAE 286 (693)
Q Consensus 264 ~~~~~~~l~~L~~L~l~~n~l~~ 286 (693)
...++.|+.|++..|.+++
T Consensus 161 ----~~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 161 ----DCTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp ----CCCTTTTHHHHHHHHHCTT
T ss_pred ----ecCCCCHHHHHHHHHhCCc
Confidence 2345667777776666654
No 111
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.79 E-value=3.5e-18 Score=181.32 Aligned_cols=322 Identities=16% Similarity=0.295 Sum_probs=188.6
Q ss_pred CccCCCCccCCCcc-cccEEEccCCcCcccccccccCCCCCCcEEEeeCCc---ccccCcccCCCCCCCcEEEcCCCCCC
Q psy8029 88 NVGVLSPPYFDGLH-FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS---ITELYSGVFQYVPKLQVLDLGSNDVA 163 (693)
Q Consensus 88 ~i~~l~~~~~~~l~-~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~ 163 (693)
.++.|...+|.++. .|+.+.+.. .++.|...+|.+|.+|+.+.+..+. ++.++..+|.+|.+|+.+.+..+ ++
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred eeeEcCHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc
Confidence 45677778888774 588888876 4888888888888888888887653 66677888888888888777654 67
Q ss_pred ccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhh
Q psy8029 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFA 243 (693)
Q Consensus 164 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 243 (693)
.+...+|..+.+|+.+.+.. .+..+...+|..+.+|+.+.+..+ ++.+...+|.+ ..|+.+.+..+ +..+...+|.
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~ 202 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFS 202 (394)
T ss_dssp EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTT
T ss_pred eehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhh
Confidence 77777788888888888864 356667777888888888887654 66677777764 46777777653 4556666677
Q ss_pred cccCceEEEEecCCCcccccCccccC-------------CCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC
Q psy8029 244 EMKYLQVIKISYHKDSLKELPSGLFA-------------NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310 (693)
Q Consensus 244 ~~~~L~~L~l~~n~~~~~~i~~~~~~-------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~ 310 (693)
.+..++........ ...+....+. ....+..+.+. +.+..+...+|.++..|+.+.+.. .+.
T Consensus 203 ~c~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~--~~~ 277 (394)
T 4gt6_A 203 ECFALSTITSDSES--YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPD--SVV 277 (394)
T ss_dssp TCTTCCEEEECCSS--SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCT--TCC
T ss_pred hccccceecccccc--cccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccc--ccc
Confidence 77777777665443 1122222111 11222333332 223444455555556666655544 234
Q ss_pred cCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCC
Q psy8029 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390 (693)
Q Consensus 311 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 390 (693)
.++..+|.+++.|+.+.+. +.++.++..+|.+|.+|+.+.+..+ ++.+...+|.+|
T Consensus 278 ~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-----------------------v~~I~~~aF~~C 333 (394)
T 4gt6_A 278 SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-----------------------ITQILDDAFAGC 333 (394)
T ss_dssp EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-----------------------CCEECTTTTTTC
T ss_pred eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-----------------------ccEehHhHhhCC
Confidence 4555555555666665554 3445555555555555555555432 444444555555
Q ss_pred CCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCC
Q psy8029 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN 453 (693)
Q Consensus 391 ~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 453 (693)
.+|+.+.+..+ ++.. +..+|.+|++|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 334 ~~L~~i~ip~s-v~~I----~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKI----PESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTCCEEEECTT-CCBC----CGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred CCCCEEEECcc-cCEE----hHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 55555555432 3322 2445555555555555554321 122344555555555444
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=6.5e-20 Score=190.49 Aligned_cols=209 Identities=19% Similarity=0.178 Sum_probs=105.6
Q ss_pred CCCCccEEEcCCCCCccc-CcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCC-CCCCC-ChhhhccCcc
Q psy8029 270 NLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN-KLKYL-PENLFESLKE 346 (693)
Q Consensus 270 ~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~ 346 (693)
.+++|++|++++|.+... .+..+..+++|++|++++| .++......+..+++|++|++++| .++.. ....+..+++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 344555555555544331 2233444555555555555 343322233445556666666665 44421 1222455566
Q ss_pred CceEeccCC-cCcc--ccCc-cCCC-CCCeEeCCCC--ccc-cccccccCCCCCCcEEECCCCc-CcccccccCCCCccC
Q psy8029 347 LYTLNLKNN-QLEN--ITSL-VGLS-GLNSLDLSWN--QLE-QINLIAFDGLSSLNTVDLSHNL-LTFDEYQYGYSPLKQ 417 (693)
Q Consensus 347 L~~L~Ls~n-~l~~--l~~~-~~l~-~L~~L~Ls~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~ 417 (693)
|++|++++| .+++ ++.. ..++ +|++|++++| .++ +..+..+..+++|++|++++|. ++.. ....+..
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----~~~~l~~ 245 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND----CFQEFFQ 245 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG----GGGGGGG
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH----HHHHHhC
Confidence 666666666 5554 2322 4455 6666666666 333 2223344556666666666666 4433 2334556
Q ss_pred CCCCcEEECCCCC-CCcCChhHHhcCCCCcEEECCCCCCccCCCcccccC-CCccEEECCCCCCceeeccch
Q psy8029 418 CVNLETINLSYNR-ISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIV-SNKLTLDLSFNQIAIVDLRTL 487 (693)
Q Consensus 418 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~ 487 (693)
+++|++|++++|. ++......+..+++|+.|++++| ++ ...+..+ ..+..|++++|+++++.+..+
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcc
Confidence 6667777776663 32222224556677777777766 22 2222222 224555567777776554443
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.6e-18 Score=167.91 Aligned_cols=153 Identities=26% Similarity=0.386 Sum_probs=122.5
Q ss_pred cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEc
Q psy8029 78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDL 157 (693)
Q Consensus 78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 157 (693)
+.++++++ .++.++.. +. ++|++|++++| .|+.+++..|.++++|++|+|++|.++.+.+..|.++++|++|+|
T Consensus 14 ~~v~c~~~--~l~~iP~~-l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGK--GLTEIPTN-LP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTS--CCSSCCSS-CC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCC--CcCcCCCc-cC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 46677776 77777743 22 57888888888 888888877888888888888888888877777888888888888
Q ss_pred CCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029 158 GSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236 (693)
Q Consensus 158 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 236 (693)
++|.++.+++..|..+++|++|+|++|+++++.+..|..+++|++|+|++|.++.+++..|..+++|+.|++++|.+..
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8888888888778888888888888888888877778888888888888888888887778888888888888887763
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.5e-19 Score=183.27 Aligned_cols=173 Identities=25% Similarity=0.380 Sum_probs=91.0
Q ss_pred CCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCC
Q psy8029 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL 176 (693)
Q Consensus 97 ~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 176 (693)
+..+++|++|++++| .++.++. +..+++|++|++++|+++++++ +..+++|++|++++|.++.++. +..+++|
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTC
T ss_pred hhhcCcccEEEccCC-CcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCC
Confidence 344555666666665 5555532 4555556666666665555544 4555566666666555555432 5555555
Q ss_pred CEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecC
Q psy8029 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256 (693)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 256 (693)
++|++++|+++++. .+..+++|++|++++|.++.+ ..+..+++|+.|++++|.++.+++ +..+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 55555555555542 245555555555555555554 234555555555555555554443 444555555555555
Q ss_pred CCcccccCccccCCCCCccEEEcCCCCCcc
Q psy8029 257 KDSLKELPSGLFANLPLLNTVILGESSIAE 286 (693)
Q Consensus 257 ~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~ 286 (693)
. ++.++. +..+++|+.|++++|.+..
T Consensus 189 ~--i~~l~~--l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 H--ISDLRA--LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C--CCBCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred c--CCCChh--hccCCCCCEEECcCCcccC
Confidence 4 223332 4444555555555544443
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=8e-19 Score=183.83 Aligned_cols=174 Identities=26% Similarity=0.376 Sum_probs=136.6
Q ss_pred cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccC-CCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029 78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK-GTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156 (693)
Q Consensus 78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 156 (693)
+.++++++ .++.++.... +.++.|+|++| .|+.++...|. ++++|++|+|++|+|+.+++..|.++++|++|+
T Consensus 21 ~~l~c~~~--~l~~iP~~~~---~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQ--QLPNVPQSLP---SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSS--CCSSCCSSCC---TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCC--CcCccCccCC---CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 56777777 7887774322 45788888888 88888887777 788888888888888888877788888888888
Q ss_pred cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcC---CCCCCCcEEEcCCCc
Q psy8029 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVF---SDLRKLQTFYANSNR 233 (693)
Q Consensus 157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~l~~n~ 233 (693)
|++|.++.+++..|..+++|++|+|++|+++.+.+..|..+++|++|+|++|.++.++...| ..+++|+.|++++|.
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 88888888888778888888888888888888877778888888888888888888877766 457888888888888
Q ss_pred cccCChhhhhcccCc--eEEEEecCC
Q psy8029 234 FQMFPKDLFAEMKYL--QVIKISYHK 257 (693)
Q Consensus 234 l~~~~~~~~~~~~~L--~~L~l~~n~ 257 (693)
++.++...|..++.+ +.|++++|.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCccCHHHhhhccHhhcceEEecCCC
Confidence 888887777766653 666666665
No 116
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=9.1e-19 Score=177.40 Aligned_cols=174 Identities=23% Similarity=0.377 Sum_probs=155.0
Q ss_pred CcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCC
Q psy8029 73 NITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152 (693)
Q Consensus 73 ~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 152 (693)
.++.|+.|+++++ .++.++ .+..+++|++|++++| .++++++ +.++++|++|++++|.++.++. +..+++|
T Consensus 44 ~l~~L~~L~l~~~--~i~~~~--~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 114 (291)
T 1h6t_A 44 ELNSIDQIIANNS--DIKSVQ--GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKL 114 (291)
T ss_dssp HHHTCCEEECTTS--CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTC
T ss_pred hcCcccEEEccCC--CcccCh--hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCC
Confidence 3567999999999 998886 5889999999999999 9999887 8999999999999999988765 7899999
Q ss_pred cEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCC
Q psy8029 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232 (693)
Q Consensus 153 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 232 (693)
++|++++|.+.+++ .+..+++|++|++++|+++++ ..+..+++|++|++++|.++.+++ +..+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 99999999999873 478999999999999999988 458899999999999999999876 889999999999999
Q ss_pred ccccCChhhhhcccCceEEEEecCCCcccccCc
Q psy8029 233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPS 265 (693)
Q Consensus 233 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~ 265 (693)
.++.++. +..+++|+.|++++|+ +...+.
T Consensus 189 ~i~~l~~--l~~l~~L~~L~l~~n~--i~~~~~ 217 (291)
T 1h6t_A 189 HISDLRA--LAGLKNLDVLELFSQE--CLNKPI 217 (291)
T ss_dssp CCCBCGG--GTTCTTCSEEEEEEEE--EECCCE
T ss_pred cCCCChh--hccCCCCCEEECcCCc--ccCCcc
Confidence 9998864 7899999999999998 434443
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.2e-18 Score=164.87 Aligned_cols=153 Identities=28% Similarity=0.447 Sum_probs=127.3
Q ss_pred cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCccccc-ccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029 78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLH-KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156 (693)
Q Consensus 78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 156 (693)
+.++++++ .++.++.. + ...+++|++++| .++.++ ...|.++++|++|++++|.++.+++..|.++++|++|+
T Consensus 14 ~~l~~s~n--~l~~iP~~-~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQ--KLNKIPEH-I--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSS--CCSSCCSC-C--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEeEeCCC--CcccCccC-C--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 57888887 88888743 2 235678889988 888874 45678888899999988888888887888888899999
Q ss_pred cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236 (693)
Q Consensus 157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 236 (693)
+++|.++++++..|..+++|++|+|++|+++++.+..|..+++|++|++++|+++.+++..|..+++|+.|++++|.+..
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 98888888888888888888889988888888888888888888888888888888888888888888888888888763
No 118
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.77 E-value=1.5e-17 Score=176.40 Aligned_cols=336 Identities=16% Similarity=0.252 Sum_probs=236.1
Q ss_pred CcccccccccCCCC-CCcEEEeeCCcccccCcccCCCCCCCcEEEcCCC---CCCccChhhhCCCCCCCEEEccCCCCCC
Q psy8029 113 EITGLHKDIFKGTP-QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN---DVAYMDPEIFKNLTSLRILNLDHNQLIN 188 (693)
Q Consensus 113 ~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 188 (693)
.++.|+..+|.+++ .|+.+.+.. .++.|...+|.+|.+|+.+.+..+ .++.+...+|.++.+|+.+.+..+ ++.
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 46788889999885 599999975 488899999999999999999765 478888899999999999888764 778
Q ss_pred CChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCcccc
Q psy8029 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF 268 (693)
Q Consensus 189 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~ 268 (693)
+...+|..+.+|+.+.+.. .+..+...+|..+..|+.+.+..+ ++.+...+|.. ..|+.+.+..+ ...+...+|
T Consensus 128 I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~---~~~i~~~af 201 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK---VTRIGTNAF 201 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT---CCEECTTTT
T ss_pred ehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc---ccccccchh
Confidence 8888899999999999974 467788888999999999998764 67788888864 57888888765 346667778
Q ss_pred CCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCc
Q psy8029 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348 (693)
Q Consensus 269 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 348 (693)
..+..++...........+....+............ +.....+..+.+.. .++.+...+|..+..|+
T Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~ 268 (394)
T 4gt6_A 202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIR------------YPSQREDPAFKIPN-GVARIETHAFDSCAYLA 268 (394)
T ss_dssp TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE------------CCTTCCCSEEECCT-TEEEECTTTTTTCSSCC
T ss_pred hhccccceecccccccccccceeecccccccccccc------------cccccccceEEcCC-cceEcccceeeeccccc
Confidence 888888888877665555443333322211111110 11122333333322 23344455566666666
Q ss_pred eEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEEC
Q psy8029 349 TLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426 (693)
Q Consensus 349 ~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~L 426 (693)
.+.+..+. ..+... .++++|+.+.+. +.+..+...+|.++.+|+.+++..+ ++.. +..+|.+|.+|+.+.+
T Consensus 269 ~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I----~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 269 SVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQI----LDDAFAGCEQLERIAI 341 (394)
T ss_dssp EEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEE----CTTTTTTCTTCCEEEE
T ss_pred EEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEe----hHhHhhCCCCCCEEEE
Confidence 66654332 223322 556667777764 4577888889999999999999865 5544 4789999999999999
Q ss_pred CCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCc
Q psy8029 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIA 480 (693)
Q Consensus 427 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 480 (693)
..+ ++.+...+|.+|++|+.+++.++.... ..+.....|+.+.+..|.+.
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 754 888999999999999999999986542 23556778888888776543
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=5.2e-18 Score=186.14 Aligned_cols=181 Identities=19% Similarity=0.329 Sum_probs=105.1
Q ss_pred cccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEc
Q psy8029 102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181 (693)
Q Consensus 102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 181 (693)
+|+.|++++| ++++++...+ ++|++|++++|.++.+| ..+++|++|++++|.+++++. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CccEEEeCCC-CCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 6777777777 7777666542 56777777777777666 235667777777777766554 433 6667777
Q ss_pred cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK 261 (693)
Q Consensus 182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 261 (693)
++|++++++. .+++|++|++++|.++.++. .+++|+.|++++|.++.++. |. ++|+.|+++
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls------- 188 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVS------- 188 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECC-------
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECc-------
Confidence 7766666544 45666666666666666554 34556666666665555444 22 444444444
Q ss_pred ccCccccCCCCCccEEEcCCCCCcccCcccccC-----CCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCC
Q psy8029 262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWN-----STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL 336 (693)
Q Consensus 262 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~ 336 (693)
+|.++.+|. |.. ...|+.|++++| .++.+|..++. +++|+.|++++|.++..
T Consensus 189 -------------------~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~-l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 189 -------------------TNLLESLPA--VPVRNHHSEETEIFFRCREN-RITHIPENILS-LDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -------------------SSCCSSCCC--CC--------CCEEEECCSS-CCCCCCGGGGG-SCTTEEEECCSSSCCHH
T ss_pred -------------------CCCCCchhh--HHHhhhcccccceEEecCCC-cceecCHHHhc-CCCCCEEEeeCCcCCCc
Confidence 444444443 111 112255666665 55556555443 66666666666666543
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.7e-17 Score=161.77 Aligned_cols=153 Identities=26% Similarity=0.418 Sum_probs=126.2
Q ss_pred ccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029 77 INTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156 (693)
Q Consensus 77 L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 156 (693)
-+.++.+++ .++.++... .++|++|+|++| .++.+.+..|.++++|++|+|++|+++.++...|..+++|++|+
T Consensus 21 ~~~v~c~~~--~l~~ip~~~---~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCRSK--RHASVPAGI---PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTEEECTTS--CCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEeEccCC--CcCccCCCC---CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 456777777 788777432 278888888888 88888888888888888888888888888888888888888888
Q ss_pred cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236 (693)
Q Consensus 157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 236 (693)
|++|.++.+++..|..+++|++|++++|+++.++.. +..+++|++|++++|+++.+++..|..+++|+.|++++|.+..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 888888888888888888888888888888877543 5788888888888888888888778888888888888888774
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=7.4e-19 Score=195.12 Aligned_cols=175 Identities=25% Similarity=0.382 Sum_probs=88.9
Q ss_pred CCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCC
Q psy8029 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL 176 (693)
Q Consensus 97 ~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 176 (693)
+..+++|+.|++++| .+..++. +..+++|+.|+|++|.++++++ |..+++|+.|+|++|.+..++ .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTC
T ss_pred hhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCC
Confidence 344455555555555 5555442 4455555555555555555443 445555555555555555443 24555555
Q ss_pred CEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecC
Q psy8029 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256 (693)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 256 (693)
++|+|++|++.+++ .+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 55555555555442 244555555555555555554 224455555555555555554443 445555555555555
Q ss_pred CCcccccCccccCCCCCccEEEcCCCCCcccC
Q psy8029 257 KDSLKELPSGLFANLPLLNTVILGESSIAELP 288 (693)
Q Consensus 257 ~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~ 288 (693)
. +..++. +..+++|+.|++++|.+...|
T Consensus 186 ~--i~~l~~--l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 186 H--ISDLRA--LAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp C--CCBCGG--GTTCTTCSEEECCSEEEECCC
T ss_pred C--CCCChH--HccCCCCCEEEccCCcCcCCc
Confidence 4 223321 445555555555555554443
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=9.2e-18 Score=186.32 Aligned_cols=177 Identities=30% Similarity=0.402 Sum_probs=129.1
Q ss_pred cCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccC
Q psy8029 268 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL 347 (693)
Q Consensus 268 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 347 (693)
+..+++|+.|++++|.+..++. +..+++|+.|++++| .+..+++ +..+++|+.|++++|.++.++. +..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCTT--STTCTTC
T ss_pred hhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCCChh--hccCCCC
Confidence 3456777888888887777753 567778888888877 7777666 5677788888888887777663 6677778
Q ss_pred ceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECC
Q psy8029 348 YTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427 (693)
Q Consensus 348 ~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls 427 (693)
+.|+|++|+++.++....+++|+.|+|++|.++++ ..+..+++|+.|+|++|.++.. .++..+++|+.|+|+
T Consensus 112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI------VPLAGLTKLQNLYLS 183 (605)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC------GGGTTCTTCCEEECC
T ss_pred CEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc------hhhccCCCCCEEECc
Confidence 88888888777776667777777888877777776 4567777777777777777743 226777777777777
Q ss_pred CCCCCcCChhHHhcCCCCcEEECCCCCCccCCCc
Q psy8029 428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQ 461 (693)
Q Consensus 428 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 461 (693)
+|.+++++ .+..+++|+.|+|++|++.+.+..
T Consensus 184 ~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 184 KNHISDLR--ALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp SSCCCBCG--GGTTCTTCSEEECCSEEEECCCCC
T ss_pred CCCCCCCh--HHccCCCCCEEEccCCcCcCCccc
Confidence 77777763 367777777777777777766544
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=3.4e-18 Score=170.32 Aligned_cols=174 Identities=20% Similarity=0.244 Sum_probs=123.4
Q ss_pred HHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCccc
Q psy8029 66 ISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGV 145 (693)
Q Consensus 66 ~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 145 (693)
.+++....+..+..++++++ .++++. .+..+++|++|++++| .++.++ .+..+++|++|++++|.++++++
T Consensus 10 ~~~~pd~~l~~l~~l~l~~~--~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-- 80 (263)
T 1xeu_A 10 NQVFPDPGLANAVKQNLGKQ--SVTDLV--SQKELSGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHNQISDLSP-- 80 (263)
T ss_dssp HHHCCSHHHHHHHHHHHTCS--CTTSEE--CHHHHTTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSSCCCCCGG--
T ss_pred HHhCCCHHHHHHHHHHhcCC--Cccccc--chhhcCcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCCccCCChh--
Confidence 34433334555666677766 676666 5677778888888887 777776 36777788888888888777765
Q ss_pred CCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCc
Q psy8029 146 FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225 (693)
Q Consensus 146 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 225 (693)
|..+++|++|++++|.++++++ +.. ++|++|++++|+++++. .+..+++|++|++++|++++++ .+..+++|+
T Consensus 81 l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~ 153 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLE 153 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCC
T ss_pred hccCCCCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCC
Confidence 6777888888888887777654 233 77888888888777763 3677777788888777777764 366777777
Q ss_pred EEEcCCCccccCChhhhhcccCceEEEEecCC
Q psy8029 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHK 257 (693)
Q Consensus 226 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 257 (693)
.|++++|.++.+ ..+..+++|+.|++++|.
T Consensus 154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred EEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 777777777766 336667777777777776
No 124
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=3.1e-17 Score=155.96 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=93.7
Q ss_pred CCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCC
Q psy8029 98 DGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLR 177 (693)
Q Consensus 98 ~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 177 (693)
+.+++|++|++++| .++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCC-CccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 45566666666666 666555 2556666666666666555443 255666666666666666654444566666666
Q ss_pred EEEccCCCCCCCChhhcCCCCCCcEEECcCCC-CCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecC
Q psy8029 178 ILNLDHNQLINLTRAIFNNVPNLRSLDISGNN-ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256 (693)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 256 (693)
+|++++|++++..+..++.+++|++|++++|. ++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 66666666665555556666666666666665 55554 3566666666666666666655 3566667777777766
Q ss_pred C
Q psy8029 257 K 257 (693)
Q Consensus 257 ~ 257 (693)
+
T Consensus 192 ~ 192 (197)
T 4ezg_A 192 T 192 (197)
T ss_dssp -
T ss_pred c
Confidence 5
No 125
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.9e-17 Score=157.44 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=126.6
Q ss_pred CcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCC
Q psy8029 73 NITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152 (693)
Q Consensus 73 ~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 152 (693)
.++.|+.|+++++ .++.++ .+..+++|++|++++| .++.++ .+..+++|++|++++|.++......|+.+++|
T Consensus 42 ~l~~L~~L~l~~n--~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANI--NVTDLT--GIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESS--CCSCCT--TGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hcCCccEEeccCC--CccChH--HHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 3567889999998 888777 5888999999999999 888776 47889999999999999987545568889999
Q ss_pred cEEEcCCCCCCccChhhhCCCCCCCEEEccCCC-CCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCC
Q psy8029 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ-LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231 (693)
Q Consensus 153 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 231 (693)
++|++++|.+++..+..+..+++|++|++++|. ++.++ .+..+++|++|++++|.++.++ .+..+++|+.|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeC
Confidence 999999999988777788899999999999998 77765 4788899999999999998876 478889999999999
Q ss_pred Ccccc
Q psy8029 232 NRFQM 236 (693)
Q Consensus 232 n~l~~ 236 (693)
|++..
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 88753
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=6.4e-18 Score=168.36 Aligned_cols=168 Identities=21% Similarity=0.256 Sum_probs=83.8
Q ss_pred CccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEec
Q psy8029 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL 352 (693)
Q Consensus 273 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 352 (693)
++..++++++.+++++ .+..+++|+.|++++| .++.++ .+..+++|++|++++|.++.++. +..+++|+.|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 4444555555555444 2344455555555555 455544 13445555555555555555444 445555555555
Q ss_pred cCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC
Q psy8029 353 KNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432 (693)
Q Consensus 353 s~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 432 (693)
++|++++++.... ++|++|++++|.++++. .+..+++|++|++++|+++
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~------------------------------~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD------------------------------SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG------------------------------GGTTCTTCCEEECTTSCCC
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCCh------------------------------hhcCcccccEEECCCCcCC
Confidence 5555554444322 44444444444444432 2444555555555555555
Q ss_pred cCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCcee
Q psy8029 433 SLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV 482 (693)
Q Consensus 433 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 482 (693)
+++ .+..+++|+.|++++|+++++ ..+..+++|+.|++++|+++..
T Consensus 142 ~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 142 SIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 542 245555555555555555554 2344555555555555555544
No 127
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.71 E-value=9.9e-16 Score=161.63 Aligned_cols=263 Identities=17% Similarity=0.279 Sum_probs=155.7
Q ss_pred CcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCC
Q psy8029 73 NITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152 (693)
Q Consensus 73 ~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 152 (693)
....|+.+.+.. .++.|+..+|.+|.+|+.+++.. .++.|+..+|.++ +|+.+.+.. .++.+...+|..+ +|
T Consensus 44 ~~~~i~~v~ip~---~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 44 DRDRISEVRVNS---GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGCSEEEECT---TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CC
T ss_pred cccCCEEEEeCC---CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Cc
Confidence 345677888853 78888888888888888888865 4788888888887 577777764 4677888888765 78
Q ss_pred cEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCC------------CcCCC
Q psy8029 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS------------GVFSD 220 (693)
Q Consensus 153 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------------~~~~~ 220 (693)
+.+.+..+ +..+...+|.++ +|+.+.+.. .++.+...+|..+..++.+.+..+....... ..+..
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 88888754 556666667665 566666654 3566666667777777777776543321111 11223
Q ss_pred CCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccE
Q psy8029 221 LRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300 (693)
Q Consensus 221 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 300 (693)
+..+..+.+... ...+....|..+..|+.+.+..+ ...+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.
T Consensus 193 ~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 193 AKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccc-eeEEeecccccccccceeeeccc---eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 333444433322 22333334445555555555433 23444555555555555555443 44555555555555555
Q ss_pred EEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEecc
Q psy8029 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353 (693)
Q Consensus 301 L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls 353 (693)
+.+.. .+..++..+|.+|.+|+.+.+.++.++.++..+|.+|.+|+.+.+.
T Consensus 268 i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 268 LNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 55543 3455555555555555555555555555555555555555555553
No 128
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.68 E-value=3.4e-15 Score=157.47 Aligned_cols=316 Identities=17% Similarity=0.239 Sum_probs=205.5
Q ss_pred cCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCC
Q psy8029 96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTS 175 (693)
Q Consensus 96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 175 (693)
.+....+|+.+.+.. +++.|+..+|.+|.+|+.+.+.. .++.|+..+|.++ +|+.+.+..+ ++.+...+|..+ +
T Consensus 41 ~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp TGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred ccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 566778899999986 69999999999999999999975 4888999999988 6888888654 778888888775 7
Q ss_pred CCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEec
Q psy8029 176 LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY 255 (693)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 255 (693)
|+.+.+..+ ++.+...+|.++ +++.+.+.. .++.+...+|..+..++.+.+..+....+....+ . .
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~----------~ 180 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-L----------Y 180 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-E----------E
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccce-e----------c
Confidence 999999864 566666777665 677776654 4667777778888888888776654322111100 0 0
Q ss_pred CCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCC
Q psy8029 256 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335 (693)
Q Consensus 256 n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~ 335 (693)
+. . ......+.....+..+.+... ...+....|..+.+++.+.+.. .+..++..+|.++..|+.+.+..+ ++.
T Consensus 181 ~~--~-~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~-v~~ 253 (379)
T 4h09_A 181 NK--N-KTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN-VTS 253 (379)
T ss_dssp ET--T-SSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT-CCE
T ss_pred cc--c-cceeccccccccccccccccc-eeEEeecccccccccceeeecc--ceeEEccccccCCccceEEEcCCC-ccE
Confidence 00 0 001111333344444444322 2334444455566666666644 355555666666666666666554 555
Q ss_pred CChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCC
Q psy8029 336 LPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYS 413 (693)
Q Consensus 336 ~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 413 (693)
+...+|..+..|+.+.+..+ ++.++.. .++++|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.. +..
T Consensus 254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I----~~~ 327 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI----QVY 327 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE----CTT
T ss_pred eCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE----HHH
Confidence 66666666666666666432 4444433 56667777777766777777777777777777777644 4444 366
Q ss_pred CccCCCCCcEEECCCCCCCcCChhHHhcCCCC
Q psy8029 414 PLKQCVNLETINLSYNRISSLFDDWISSMTSL 445 (693)
Q Consensus 414 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 445 (693)
+|.+|++|+.+.+..+ ++.+...+|.++..+
T Consensus 328 aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 328 AFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred HhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 7777888887777654 666666777766433
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=5.9e-16 Score=144.35 Aligned_cols=125 Identities=26% Similarity=0.320 Sum_probs=81.8
Q ss_pred CCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCcc
Q psy8029 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL 470 (693)
Q Consensus 391 ~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 470 (693)
++|++|++++|.++.. ....+..+++|++|++++|.++++++..|..+++|+.|++++|+|+++++..+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEe----CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 3455555555555433 133345556666666666666666665566666666666666666666666566666677
Q ss_pred EEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHhcc
Q psy8029 471 TLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVSKK 533 (693)
Q Consensus 471 ~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~~~ 533 (693)
.|++++|+++.++...+..+ .+++.+++++|+|.|+|+ +.|+..|+...
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l--------------~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~ 153 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRL--------------TSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 153 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTC--------------TTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred EEECcCCcceEeCHHHhcCC--------------cccCEEEecCCCeeccCccHHHHHHHHhhC
Confidence 77777777766655444433 347899999999999998 67888888764
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.66 E-value=6.2e-16 Score=142.91 Aligned_cols=150 Identities=25% Similarity=0.330 Sum_probs=109.6
Q ss_pred CcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEE
Q psy8029 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472 (693)
Q Consensus 393 L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 472 (693)
.+.+++++|.++.. +..+ .++|++|+|++|+|+++.+..|..+++|+.|+|++|+|+++++..|..+++|+.|
T Consensus 11 ~~~l~~s~n~l~~i-----p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLASV-----PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCSSC-----CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCcc-----CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 45677777777643 2222 3678888888888888888888888888888888888888888878888888888
Q ss_pred ECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHhcccccceeeeeeeccCceee
Q psy8029 473 DLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVSKKMTKTVYQMLELVTDNLEC 551 (693)
Q Consensus 473 ~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 551 (693)
+|++|+|+.++...+..+ .+++.+++++|||.|+|. +.|+..|+..... .+..........+.|
T Consensus 84 ~L~~N~l~~~~~~~~~~l--------------~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~-~~~~~~~~~~~~~~C 148 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNL--------------KSLTHIWLLNNPWDCACSDILYLSRWISQHPG-LVFGYLNLDPDSARC 148 (170)
T ss_dssp ECCSSCCCCCCTTTTTTC--------------TTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG-GEECSSSBCGGGSBB
T ss_pred ECCCCccCEeCHHHhcCC--------------CCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc-eeeccccCCccccee
Confidence 888888888877666655 458899999999999995 9999999987522 121111234567788
Q ss_pred cCCCCccccccCCC
Q psy8029 552 FGNAGVGINSVRPE 565 (693)
Q Consensus 552 ~~~~~~~~~~l~~~ 565 (693)
..+ +..+.++...
T Consensus 149 ~~~-~~~~~~~~~~ 161 (170)
T 3g39_A 149 SGT-NTPVRAVTEA 161 (170)
T ss_dssp CC--CCBGGGCCST
T ss_pred CCC-Cccchhcccc
Confidence 765 4455555443
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=2.4e-15 Score=139.38 Aligned_cols=119 Identities=19% Similarity=0.273 Sum_probs=95.9
Q ss_pred cEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEE
Q psy8029 394 NTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLD 473 (693)
Q Consensus 394 ~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 473 (693)
+.+++++|.++.. +..+ .++|++|+|++|+++++++..|.++++|+.|+|++|+|+++++..|..+++|+.|+
T Consensus 15 ~~l~~~~n~l~~i-----P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLASV-----PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCCSSC-----CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCCCCcc-----CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 5677777777643 2222 26788888888888888888888888899999999988888888778888899999
Q ss_pred CCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHhcc
Q psy8029 474 LSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVSKK 533 (693)
Q Consensus 474 L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~~~ 533 (693)
|++|+|+.++...+..+ ++++.+++++|||.|+|. +.|+..|+...
T Consensus 88 L~~N~l~~l~~~~~~~l--------------~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~ 134 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNL--------------KSLTHIYLYNNPWDCECRDIMYLRNWVADH 134 (174)
T ss_dssp CCSSCCCCCCTTTTTTC--------------TTCSEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred CCCCccceeCHHHhccc--------------cCCCEEEeCCCCcccccccHHHHHHHHHhc
Confidence 99999888877666554 458899999999999996 88999998775
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.7e-15 Score=143.20 Aligned_cols=129 Identities=23% Similarity=0.417 Sum_probs=97.4
Q ss_pred cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcc-cCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEcc
Q psy8029 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSG-VFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182 (693)
Q Consensus 104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 182 (693)
++++++++ +++.+|...+ .+|++|++++|.++.+++. .|..+++|++|++++|.++++.+..|..+++|++|+|+
T Consensus 11 ~~l~~s~~-~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56777777 7777776433 2677777777777776653 46777788888888887777777777778888888888
Q ss_pred CCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029 183 HNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236 (693)
Q Consensus 183 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 236 (693)
+|+++++.+..|.++++|++|++++|+++++.+..|..+++|++|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 888887777777778888888888888887777777778888888888887763
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=142.30 Aligned_cols=127 Identities=28% Similarity=0.428 Sum_probs=91.6
Q ss_pred cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccC
Q psy8029 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183 (693)
Q Consensus 104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 183 (693)
+.++++++ +++.+|...+ ++|++|++++|.++.++ ..|.++++|++|++++|.++++++.+|..+++|++|+|++
T Consensus 13 ~~l~~~~~-~l~~ip~~~~---~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP---RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC---TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CCCcCCCCCC---CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45667766 6776665432 46777777777777666 3467777777777777777777777777777777777777
Q ss_pred CCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccc
Q psy8029 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235 (693)
Q Consensus 184 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (693)
|+++.+.+..|..+++|++|+|++|.++.+++..|..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777777777777777777777777777777777777777777777777765
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=5.9e-15 Score=137.55 Aligned_cols=132 Identities=27% Similarity=0.474 Sum_probs=98.0
Q ss_pred ccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEcc
Q psy8029 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182 (693)
Q Consensus 103 L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 182 (693)
.+.++++++ +++.++... .++|++|++++|.+++++...|..+++|++|++++|.++++++..|..+++|++|+++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSS-CCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCC-CCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 456777777 777766543 2567777777777777777667777777777777777777777777777778888888
Q ss_pred CCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCC
Q psy8029 183 HNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238 (693)
Q Consensus 183 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 238 (693)
+|+++++++..|..+++|++|++++|.++.+++..|..+++|++|++++|.+....
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 88777777776777788888888888888777777777788888888888776443
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.1e-15 Score=141.22 Aligned_cols=134 Identities=21% Similarity=0.295 Sum_probs=62.8
Q ss_pred ccccEEEeecCCCCcc--CCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCC
Q psy8029 75 TTINTLAFSNSPSNVG--VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152 (693)
Q Consensus 75 ~~L~~L~l~~~~~~i~--~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 152 (693)
+.|+.|+++++ .++ .++ ..+..+++|++|++++| .++.+ ..+..+++|++|++++|.++...+..+..+++|
T Consensus 24 ~~L~~L~l~~n--~l~~~~i~-~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNC--KSNDGKIE-GLTAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSC--BCBTTBCS-SCCGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCC--CCChhhHH-HHHHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 44555555555 444 333 23445555555555555 45444 334445555555555555544333333344555
Q ss_pred cEEEcCCCCCCccCh-hhhCCCCCCCEEEccCCCCCCCCh---hhcCCCCCCcEEECcCCCCCcCC
Q psy8029 153 QVLDLGSNDVAYMDP-EIFKNLTSLRILNLDHNQLINLTR---AIFNNVPNLRSLDISGNNISILP 214 (693)
Q Consensus 153 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~i~~~~ 214 (693)
++|++++|.+++++. ..+..+++|++|++++|.++++++ ..+..+++|++|++++|.+..++
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 555555554444432 334444455555555554444443 33444444444444444444433
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.9e-15 Score=139.54 Aligned_cols=136 Identities=22% Similarity=0.266 Sum_probs=119.9
Q ss_pred cccccEEEccCCcCcc--cccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCC
Q psy8029 100 LHFVKHILLSHNKEIT--GLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLR 177 (693)
Q Consensus 100 l~~L~~L~Ls~n~~i~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 177 (693)
.++|++|++++| .++ .++. .+..+++|++|++++|.++.+ ..|..+++|++|++++|.+.+..+..+..+++|+
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCC-CCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 478999999999 898 5654 478899999999999999888 5588999999999999999986677778899999
Q ss_pred EEEccCCCCCCCCh-hhcCCCCCCcEEECcCCCCCcCCC---CcCCCCCCCcEEEcCCCccccCCh
Q psy8029 178 ILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISILPS---GVFSDLRKLQTFYANSNRFQMFPK 239 (693)
Q Consensus 178 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~ 239 (693)
+|++++|++++++. ..+..+++|++|++++|.++.++. ..+..+++|++|++++|.+..++.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 99999999998764 678999999999999999999887 578899999999999999887765
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=2.6e-17 Score=181.63 Aligned_cols=108 Identities=22% Similarity=0.186 Sum_probs=87.6
Q ss_pred CCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcE
Q psy8029 368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE 447 (693)
Q Consensus 368 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 447 (693)
.|+.|+|++|.+++++. |+.+++|+.|++++|.++.. +..+..+++|+.|+|++|.+++++ .++.+++|+.
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASDNALENVD--GVANLPRLQE 512 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCC-----CGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCE
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCccccccc-----chhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcE
Confidence 58888888888888653 78888888888888888843 567788888888888888888864 5788888888
Q ss_pred EECCCCCCccCC-CcccccCCCccEEECCCCCCceeec
Q psy8029 448 LDLRHNNFSFIP-DQLDSIVSNKLTLDLSFNQIAIVDL 484 (693)
Q Consensus 448 L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~ 484 (693)
|+|++|+|++++ +..+..+++|+.|+|++|++++.++
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 888888888886 6667888888888888888887654
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=2e-17 Score=182.46 Aligned_cols=197 Identities=17% Similarity=0.133 Sum_probs=141.2
Q ss_pred CCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCC------------CCCcCChhhhcCCCCCcEEE-ccCCCCCCC
Q psy8029 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK------------KLTSLPSTLFRDCKKLVKLE-LQRNKLKYL 336 (693)
Q Consensus 270 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~------------~l~~l~~~~~~~~~~L~~L~-l~~n~l~~~ 336 (693)
.++.|+.|++++|.++.+|.. ++.+++|+.|++++|. .....++..+..+++|+.|+ ++.|.+..+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 445555555555555555433 2445555555554431 12233344456667777777 555443322
Q ss_pred Chhh-----hc--cCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccc
Q psy8029 337 PENL-----FE--SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQ 409 (693)
Q Consensus 337 ~~~~-----~~--~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 409 (693)
+... +. ....|+.|++++|+++++|....+++|+.|+|++|.++.+ |..|+.+++|+.|+|++|.+++.
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l--- 501 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV--- 501 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC---
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCC---
Confidence 2111 11 1235889999999999998888899999999999999966 45889999999999999999964
Q ss_pred cCCCCccCCCCCcEEECCCCCCCcCC-hhHHhcCCCCcEEECCCCCCccCCCcc---cccCCCccEEEC
Q psy8029 410 YGYSPLKQCVNLETINLSYNRISSLF-DDWISSMTSLKELDLRHNNFSFIPDQL---DSIVSNKLTLDL 474 (693)
Q Consensus 410 ~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L 474 (693)
+ .+..+++|++|+|++|.++++. |..+..+++|+.|+|++|+++++++.. +..+++|+.|++
T Consensus 502 --p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 --D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp --G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred --c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 3 7888999999999999999997 888999999999999999999887643 334788888864
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=4.4e-15 Score=134.12 Aligned_cols=125 Identities=24% Similarity=0.285 Sum_probs=60.1
Q ss_pred ccccEEEccCCcCcc--cccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCE
Q psy8029 101 HFVKHILLSHNKEIT--GLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI 178 (693)
Q Consensus 101 ~~L~~L~Ls~n~~i~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 178 (693)
++|++|++++| .++ .++. .+..+++|++|++++|.++.+ ..|..+++|++|++++|.+++..+..+..+++|++
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCC-cCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 44555555555 554 2332 344555555555555555444 23455555555555555555544444444555555
Q ss_pred EEccCCCCCCCC-hhhcCCCCCCcEEECcCCCCCcCCC---CcCCCCCCCcEEEc
Q psy8029 179 LNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPS---GVFSDLRKLQTFYA 229 (693)
Q Consensus 179 L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l 229 (693)
|++++|++++++ +..++.+++|++|++++|.++++++ ..+..+++|+.|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555555555432 1334444445555555444444443 23344444444443
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=5.7e-15 Score=137.46 Aligned_cols=133 Identities=17% Similarity=0.236 Sum_probs=74.2
Q ss_pred cCCCcccccEEEccCCcCcccccccccCCC-CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCC
Q psy8029 96 YFDGLHFVKHILLSHNKEITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLT 174 (693)
Q Consensus 96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 174 (693)
.+.++.+|++|++++| .++.++. +..+ ++|++|++++|.++++ ..|..+++|++|++++|.++++++..|..++
T Consensus 14 ~~~~~~~L~~L~l~~n-~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGY-KIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTS-CCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCC-CCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3455566666666666 6665532 2233 3666666666666665 2356666666666666666666555555666
Q ss_pred CCCEEEccCCCCCCCCh-hhcCCCCCCcEEECcCCCCCcCCCC---cCCCCCCCcEEEcCCCc
Q psy8029 175 SLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISILPSG---VFSDLRKLQTFYANSNR 233 (693)
Q Consensus 175 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~l~~n~ 233 (693)
+|++|++++|+++.++. ..+..+++|++|++++|.++.++.. .+..+++|+.|++++|.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 66666666666655443 2345555555555555555544432 23444444444444444
No 141
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.2e-14 Score=131.21 Aligned_cols=127 Identities=18% Similarity=0.247 Sum_probs=107.0
Q ss_pred CCCCcEEEeeCCccc--ccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcE
Q psy8029 125 TPQLESLNLRGNSIT--ELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRS 202 (693)
Q Consensus 125 l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 202 (693)
.++|++|++++|.++ .++. .|..+++|++|++++|.++++ ..+..+++|++|++++|++++..+..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 467999999999998 5655 578899999999999999888 56889999999999999999866777777899999
Q ss_pred EECcCCCCCcCC-CCcCCCCCCCcEEEcCCCccccCCh---hhhhcccCceEEEEe
Q psy8029 203 LDISGNNISILP-SGVFSDLRKLQTFYANSNRFQMFPK---DLFAEMKYLQVIKIS 254 (693)
Q Consensus 203 L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~ 254 (693)
|++++|.+++++ +..+..+++|++|++++|.++.++. ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999998864 2557888999999999999888776 567888888888764
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=3.6e-15 Score=169.81 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=113.5
Q ss_pred CChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCC
Q psy8029 312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGL 390 (693)
Q Consensus 312 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l 390 (693)
++...|..++.|+.|+|++|.+..++...| .+++|++|+|++|.|+.+|.. ..+++|++|+|++|.|+.+ |..|+.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCC
Confidence 455567888999999999999998888765 788999999999999988865 7889999999999999965 6678889
Q ss_pred CCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCC-CcEEECCCCCCccCCCcccccCCCc
Q psy8029 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTS-LKELDLRHNNFSFIPDQLDSIVSNK 469 (693)
Q Consensus 391 ~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L 469 (693)
++|++|+|++|.++.. +..|..+++|++|+|++|.+++.+|..+..... +..++|++|.+++..+. .+
T Consensus 293 ~~L~~L~L~~N~l~~l-----p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l 361 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTL-----PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ER 361 (727)
T ss_dssp TTCSEEECCSSCCCCC-----CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-
T ss_pred CCCCEEECCCCCCCcc-----ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cc
Confidence 9999999999998854 556889999999999999999988887764422 23477888888876554 45
Q ss_pred cEEECCCC
Q psy8029 470 LTLDLSFN 477 (693)
Q Consensus 470 ~~L~L~~N 477 (693)
..|++++|
T Consensus 362 ~~l~l~~n 369 (727)
T 4b8c_D 362 RFIEINTD 369 (727)
T ss_dssp --------
T ss_pred ceeEeecc
Confidence 56677766
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.7e-14 Score=134.28 Aligned_cols=108 Identities=21% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCCh-hHHhcCCCCc
Q psy8029 368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-DWISSMTSLK 446 (693)
Q Consensus 368 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 446 (693)
+|++|++++|.++++ ..|..+++|++|++++|.++.. .+..+..+++|++|++++|.++.+++ ..+..+++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI----GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE----CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc----CcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCC
Confidence 444444444444443 2444455555555555555433 12223455555555555555554433 2455666666
Q ss_pred EEECCCCCCccCCCc---ccccCCCccEEECCCCCCce
Q psy8029 447 ELDLRHNNFSFIPDQ---LDSIVSNKLTLDLSFNQIAI 481 (693)
Q Consensus 447 ~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~ 481 (693)
.|++++|+++.++.. .+..+++|+.||+++|.+..
T Consensus 117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 666666666655443 34556666666666666553
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=4.2e-15 Score=169.26 Aligned_cols=154 Identities=22% Similarity=0.280 Sum_probs=101.2
Q ss_pred ccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCC
Q psy8029 117 LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNN 196 (693)
Q Consensus 117 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 196 (693)
+++..|..++.|+.|+|++|.+..++...| .+++|++|+|++|.++.++ ..|..+++|++|+|++|+++.++ ..|+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLP-AELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCC-SSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccC-hhhcC
Confidence 445667778888888888888887777655 7888888888888888665 44788888888888888888664 44778
Q ss_pred CCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhccc-CceEEEEecCCCcccccCccccCCCCCcc
Q psy8029 197 VPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK-YLQVIKISYHKDSLKELPSGLFANLPLLN 275 (693)
Q Consensus 197 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~i~~~~~~~l~~L~ 275 (693)
+++|++|+|++|.++.++.. |..+++|+.|+|++|.++..++..+..+. .+..+++++|.+.+ .+| ..++
T Consensus 292 l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~-~~p-------~~l~ 362 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI-PLP-------HERR 362 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC-CCC-------CC--
T ss_pred CCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC-cCc-------cccc
Confidence 88888888888888877665 78888888888888888876666654432 22235667776432 222 2455
Q ss_pred EEEcCCC
Q psy8029 276 TVILGES 282 (693)
Q Consensus 276 ~L~l~~n 282 (693)
.|+++.|
T Consensus 363 ~l~l~~n 369 (727)
T 4b8c_D 363 FIEINTD 369 (727)
T ss_dssp -------
T ss_pred eeEeecc
Confidence 5566554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.49 E-value=7.7e-14 Score=145.17 Aligned_cols=133 Identities=19% Similarity=0.321 Sum_probs=97.4
Q ss_pred EEECCCC-cCcccccccCCCCccCCCCCcEEECCC-CCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEE
Q psy8029 395 TVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSY-NRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472 (693)
Q Consensus 395 ~L~L~~n-~l~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 472 (693)
.++.+++ .++.. +. +..+++|++|+|++ |.++++++..|.++++|+.|+|++|+|+++++..|..+++|+.|
T Consensus 12 ~v~~~~~n~l~~i-----p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALDSL-----HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCTTT-----TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCCcc-----CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 3455555 56543 33 66667777777775 77777777777778888888888888888777777777888888
Q ss_pred ECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeec
Q psy8029 473 DLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECF 552 (693)
Q Consensus 473 ~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 552 (693)
+|++|+|+.++...+..+ .|+.|++++|+|.|+|++.||..|+..... .+..+.++|.
T Consensus 86 ~l~~N~l~~~~~~~~~~~---------------~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~-------~l~~~~~~C~ 143 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGL---------------SLQELVLSGNPLHCSCALRWLQRWEEEGLG-------GVPEQKLQCH 143 (347)
T ss_dssp ECCSSCCSCCCSTTTCSC---------------CCCEEECCSSCCCCCGGGHHHHHHHHTTCS-------SCGGGCCCCS
T ss_pred eCCCCccceeCHHHcccC---------------CceEEEeeCCCccCCCccHHHHHHHHhCcc-------cccccCCCCC
Confidence 888888877766555432 277999999999999999999999876421 2345678887
Q ss_pred CCC
Q psy8029 553 GNA 555 (693)
Q Consensus 553 ~~~ 555 (693)
.|.
T Consensus 144 ~~~ 146 (347)
T 2ifg_A 144 GQG 146 (347)
T ss_dssp SSS
T ss_pred CCh
Confidence 663
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=7.7e-13 Score=122.01 Aligned_cols=107 Identities=28% Similarity=0.528 Sum_probs=72.0
Q ss_pred CcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcC
Q psy8029 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG 207 (693)
Q Consensus 128 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 207 (693)
.+++++++|.++.+|... .++|++|++++|.++++.+..|..+++|++|+|++|+++++++..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456666666666666543 25666666666666666666666677777777777777766666666777777777777
Q ss_pred CCCCcCCCCcCCCCCCCcEEEcCCCccccC
Q psy8029 208 NNISILPSGVFSDLRKLQTFYANSNRFQMF 237 (693)
Q Consensus 208 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 237 (693)
|+++.+++..|..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777777666677777777777777776643
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1.2e-12 Score=121.17 Aligned_cols=107 Identities=23% Similarity=0.476 Sum_probs=76.1
Q ss_pred cEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCC
Q psy8029 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208 (693)
Q Consensus 129 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 208 (693)
+.+++++|+++.+|...+ ++|++|++++|.++++++..|.++++|++|+|++|+++++++..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 566667776666665432 66777777777777776666777777777777777777777666677777777777777
Q ss_pred CCCcCCCCcCCCCCCCcEEEcCCCccccCC
Q psy8029 209 NISILPSGVFSDLRKLQTFYANSNRFQMFP 238 (693)
Q Consensus 209 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 238 (693)
+++.+++..|..+++|++|++++|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 777777766777777777777777776544
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=4.7e-14 Score=147.27 Aligned_cols=160 Identities=21% Similarity=0.224 Sum_probs=67.0
Q ss_pred CCccEEEecCCCCCCcCChhhhc-----CCCCCcEEEccCCCCCCCCh-hhhccCccCceEeccCCcCccccCc------
Q psy8029 296 TNITNIVLTGHKKLTSLPSTLFR-----DCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENITSL------ 363 (693)
Q Consensus 296 ~~L~~L~l~~n~~l~~l~~~~~~-----~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~l~~~------ 363 (693)
+.|+.|++++| .++......+. ..++|++|++++|.++.... ..+..+++|+.|+|++|.+++....
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 44556666666 44433222111 22456666666665542211 1122344555555555555432111
Q ss_pred -cCCCCCCeEeCCCCcccccccc----ccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChh-
Q psy8029 364 -VGLSGLNSLDLSWNQLEQINLI----AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD- 437 (693)
Q Consensus 364 -~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~- 437 (693)
...++|++|+|++|.+++.... ++..+++|++|+|++|.++..+.......+..+++|++|+|++|.|++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 1234455555555555432221 2233444555555555544322111122233344444555555444432221
Q ss_pred ---HHhcCCCCcEEECCCCCCc
Q psy8029 438 ---WISSMTSLKELDLRHNNFS 456 (693)
Q Consensus 438 ---~~~~l~~L~~L~L~~N~l~ 456 (693)
.+...++|++|+|++|.|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 1223344444444444444
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=3.8e-15 Score=141.58 Aligned_cols=112 Identities=24% Similarity=0.326 Sum_probs=77.7
Q ss_pred cCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCC
Q psy8029 96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTS 175 (693)
Q Consensus 96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 175 (693)
.|..+++|++|++++| .++.++ .+.++++|++|++++|.++.++. .+..+++|++|++++|.+++++ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHH
T ss_pred HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCC
Confidence 6777777888888777 777766 46777778888887777776664 3455677777777777777653 3666777
Q ss_pred CCEEEccCCCCCCCCh-hhcCCCCCCcEEECcCCCCCcC
Q psy8029 176 LRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISIL 213 (693)
Q Consensus 176 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~ 213 (693)
|++|++++|+++.++. ..+..+++|++|++++|.++..
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 7777777777766544 4566666777777766666543
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=1.3e-14 Score=137.89 Aligned_cols=110 Identities=26% Similarity=0.327 Sum_probs=49.8
Q ss_pred hccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCC
Q psy8029 341 FESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVN 420 (693)
Q Consensus 341 ~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~ 420 (693)
|..+++|++|++++|+++.++....+++|++|++++|.++.++ ..+..+++|++|++++|.++.. + .+..+++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~N~l~~l-----~-~~~~l~~ 116 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASL-----S-GIEKLVN 116 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCS-SHHHHHHHCSEEEEEEEECCCH-----H-HHHHHHH
T ss_pred HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccccc-chhhcCCcCCEEECcCCcCCcC-----C-ccccCCC
Confidence 3444445555555444444443344444444444444444332 1233334444444444444432 1 2334445
Q ss_pred CcEEECCCCCCCcCCh-hHHhcCCCCcEEECCCCCCcc
Q psy8029 421 LETINLSYNRISSLFD-DWISSMTSLKELDLRHNNFSF 457 (693)
Q Consensus 421 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 457 (693)
|++|++++|.++++++ ..+..+++|+.|++++|++++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 5555555555544332 334455555555555555543
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=5.1e-13 Score=139.44 Aligned_cols=167 Identities=18% Similarity=0.137 Sum_probs=70.8
Q ss_pred CCCcEEEccCCCCCCCChhhhcc-----CccCceEeccCCcCccc--cCc-cCCCCCCeEeCCCCcccccccccc-----
Q psy8029 321 KKLVKLELQRNKLKYLPENLFES-----LKELYTLNLKNNQLENI--TSL-VGLSGLNSLDLSWNQLEQINLIAF----- 387 (693)
Q Consensus 321 ~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~Ls~n~l~~l--~~~-~~l~~L~~L~Ls~n~l~~~~~~~~----- 387 (693)
++|++|++++|.++......+.. .++|+.|+|++|.++.. ... ..+++|++|+|++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34555555555544322222211 13455555555554431 111 233345555555555544333222
Q ss_pred CCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCC----hhHHhcCCCCcEEECCCCCCccCCCc--
Q psy8029 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF----DDWISSMTSLKELDLRHNNFSFIPDQ-- 461 (693)
Q Consensus 388 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~-- 461 (693)
...+.|++|+|++|.++..+.......+..+++|++|+|++|.+++.. ...+...++|+.|+|++|.|+.....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 123445555555555543221111222334445555555555554322 22233444555555555555432211
Q ss_pred --ccccCCCccEEECCCCCCceeeccch
Q psy8029 462 --LDSIVSNKLTLDLSFNQIAIVDLRTL 487 (693)
Q Consensus 462 --~~~~l~~L~~L~L~~N~l~~~~~~~~ 487 (693)
.+...++|+.|||++|.|+......+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 12223445555555555554443333
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.16 E-value=3.7e-11 Score=104.48 Aligned_cols=100 Identities=16% Similarity=0.272 Sum_probs=75.9
Q ss_pred EEECCCCCCc--cCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcH
Q psy8029 447 ELDLRHNNFS--FIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNY 524 (693)
Q Consensus 447 ~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~ 524 (693)
.++.+++.++ .+|.. ..++++.|+|++|+|+.++...|..+ .+++.++|++|||.|||++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l--------------~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDAL--------------PALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGC--------------TTCCEEECCSSCCBCSGGGH
T ss_pred EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhc--------------cccCEEEecCCCeeccCccH
Confidence 5667777776 66543 33457788888888887777777665 34789999999999999999
Q ss_pred HHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCCccc
Q psy8029 525 DLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCD 570 (693)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~ 570 (693)
||.+|+...... .....++|..| +|..+.++..+++.|.
T Consensus 75 ~l~~wl~~~~~~-------~~~~~~~C~~P~~l~g~~l~~l~~~~l~c~ 116 (130)
T 3rfe_A 75 PLRAWLAGRPER-------APYRDLRCVAPPALRGRLLPYLAEDELRAA 116 (130)
T ss_dssp HHHHHHHTSSCS-------GGGTTCBCCBSTTTTTCBGGGCCHHHHHHT
T ss_pred HHHHHHHhCccc-------ccccCcEeCcChHHcCCCcccCCHHHhhCc
Confidence 999999875321 12457899998 8889999998888865
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.1e-10 Score=121.27 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=70.2
Q ss_pred EEEeeCC-cccccCcccCCCCCCCcEEEcCC-CCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcC
Q psy8029 130 SLNLRGN-SITELYSGVFQYVPKLQVLDLGS-NDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG 207 (693)
Q Consensus 130 ~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 207 (693)
.++++++ +++.+|. +..+++|++|+|++ |.+..+++..|.++++|++|+|++|+++++++..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3466665 6666665 56666677777764 667666666666777777777777777776666666777777777777
Q ss_pred CCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029 208 NNISILPSGVFSDLRKLQTFYANSNRFQM 236 (693)
Q Consensus 208 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 236 (693)
|+++.+++..|..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777776666665555 7777777776663
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=1.8e-08 Score=104.02 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=46.9
Q ss_pred CCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhH----HhcCCCCcEEECCCCCCccCCCccccc
Q psy8029 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW----ISSMTSLKELDLRHNNFSFIPDQLDSI 465 (693)
Q Consensus 390 l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~ 465 (693)
+++|++|++.+|.+.......... ...+++|++|+|+.|.+++..... +..+++|+.|++++|.|+......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 566666666666655321100000 123567777777777776643222 235677888888777766433322222
Q ss_pred -CCCccEEECCCCC
Q psy8029 466 -VSNKLTLDLSFNQ 478 (693)
Q Consensus 466 -l~~L~~L~L~~N~ 478 (693)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 1 2457777776
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=2.2e-08 Score=103.43 Aligned_cols=160 Identities=13% Similarity=0.112 Sum_probs=100.6
Q ss_pred hccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccC--CCCCCcEEECCC--CcCcccc-cccCCCCc
Q psy8029 341 FESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFD--GLSSLNTVDLSH--NLLTFDE-YQYGYSPL 415 (693)
Q Consensus 341 ~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~-~~~~~~~~ 415 (693)
+..+++|+.|.+++|.-..++.. .+++|++|+|..+.+.......+. .+++|+.|+|+. +...+.. .......+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred HhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 45566777777766531123332 366788888877777654433333 578888888753 2211110 00001112
Q ss_pred --cCCCCCcEEECCCCCCCcCChhHHh---cCCCCcEEECCCCCCccCCCc----ccccCCCccEEECCCCCCceeeccc
Q psy8029 416 --KQCVNLETINLSYNRISSLFDDWIS---SMTSLKELDLRHNNFSFIPDQ----LDSIVSNKLTLDLSFNQIAIVDLRT 486 (693)
Q Consensus 416 --~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~ 486 (693)
..+++|++|+|++|.+.+.....+. .+++|+.|+|+.|.+++.... .+..+++|+.|++++|.|+......
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence 3579999999999999864444444 578999999999999864322 2345788999999999998765555
Q ss_pred hhhhcccCCCCCccccccccCcEEEcCCCc
Q psy8029 487 LEIKAAAQDPNEDSTMVARSANIVILNDNP 516 (693)
Q Consensus 487 ~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np 516 (693)
+.... ...+++++|+
T Consensus 327 l~~al---------------g~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSL---------------PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC---------------CSEEECCSBC
T ss_pred HHHHc---------------CCEEEecCCc
Confidence 54311 1367888776
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=3e-08 Score=92.33 Aligned_cols=68 Identities=6% Similarity=0.068 Sum_probs=28.1
Q ss_pred CCCCCeEeCCCCcccccccc----ccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEEC--CCCCCCc
Q psy8029 366 LSGLNSLDLSWNQLEQINLI----AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL--SYNRISS 433 (693)
Q Consensus 366 l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~L--s~n~l~~ 433 (693)
.++|++|+|++|.|.+.... .+...+.|++|+|++|.|+..+.......+...++|++|+| ++|.+.+
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 34445555555554432211 22223445555555554443321112223334444555555 4444443
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.47 E-value=1.6e-07 Score=81.37 Aligned_cols=66 Identities=27% Similarity=0.553 Sum_probs=59.1
Q ss_pred CCCCCcEeeecCCCceEEEEcCCCCcc--cCCCCCCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCcc
Q psy8029 573 PCPARCYCNFSPYYSIMSVNCSSASLT--HMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNI 650 (693)
Q Consensus 573 ~cp~~~~~~~~~~~~l~~l~ls~n~l~--~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 650 (693)
+||..|.|. ...++|++++|+ .+|..++. .++.|+|++|+|+.++++.|..+++|+.|+|++|.+
T Consensus 1 ~CP~~C~C~------~~~v~Cs~~~L~~~~vP~~lp~-------~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 1 PCPAPCSCA------GTLVDCGRRGLTWASLPTAFPV-------DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CCCTTCEEE------TTEEECCSSCCCTTTSCSCCCT-------TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCCEEc------CCEEEeCCCCCccccCCCCCCc-------CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 499999997 248999999999 99987664 367899999999999999999999999999999998
Q ss_pred c
Q psy8029 651 S 651 (693)
Q Consensus 651 ~ 651 (693)
.
T Consensus 68 ~ 68 (130)
T 3rfe_A 68 R 68 (130)
T ss_dssp B
T ss_pred e
Confidence 7
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=3.5e-08 Score=91.87 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=55.1
Q ss_pred CCCCCCeEeCCCC-cccccc----ccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCC----
Q psy8029 365 GLSGLNSLDLSWN-QLEQIN----LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF---- 435 (693)
Q Consensus 365 ~l~~L~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---- 435 (693)
..++|++|+|++| .+.... ...+...++|++|+|++|.+...+.......+...++|++|+|++|.|++..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3455555666555 554322 1233445566666666666654332222223344455666666666655432
Q ss_pred hhHHhcCCCCcEEEC--CCCCCccCCC----cccccCCCccEEECCCCCCc
Q psy8029 436 DDWISSMTSLKELDL--RHNNFSFIPD----QLDSIVSNKLTLDLSFNQIA 480 (693)
Q Consensus 436 ~~~~~~l~~L~~L~L--~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~ 480 (693)
...+...++|++|+| ++|.|+.... ..+...+.|+.|+|++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 222334455555555 5555543211 11223344555555555544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=6.4e-07 Score=87.58 Aligned_cols=82 Identities=26% Similarity=0.283 Sum_probs=41.1
Q ss_pred cCCCCCCeEeCCCCccccccc--cccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCCh-----
Q psy8029 364 VGLSGLNSLDLSWNQLEQINL--IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD----- 436 (693)
Q Consensus 364 ~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----- 436 (693)
..+++|+.|+|++|.|+++.. ..+..+++|+.|+|++|.+++.. ....+..+ +|++|+|++|.+.+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~---~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER---ELDKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG---GGGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch---hhhhcccC-CcceEEccCCcCccccCcchhH
Confidence 345566666666666665432 33445566666666666665431 01122222 55666666665554221
Q ss_pred --hHHhcCCCCcEEE
Q psy8029 437 --DWISSMTSLKELD 449 (693)
Q Consensus 437 --~~~~~l~~L~~L~ 449 (693)
..+..+|+|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 2244555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=1.3e-06 Score=79.03 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=60.6
Q ss_pred cCCCCCCC--CCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCc----ccccEEEccCCcC
Q psy8029 40 DRLPEQNL--GPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGL----HFVKHILLSHNKE 113 (693)
Q Consensus 40 ~~l~~~~~--~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l----~~L~~L~Ls~n~~ 113 (693)
..+|.... -++++|++++|.+++.++..+ .+++.|+.|+|++| ..|++-.-..+..+ ++|++|+|++|.+
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L---~~~~~L~~L~L~~C-~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHM---EGLQYVEKIRLCKC-HYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGG---TTCSCCCEEEEESC-TTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHh---cCCCCCCEEEeCCC-CccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 34665432 357888888888877776655 36777888888877 34553332334442 3677777777756
Q ss_pred cccccccccCCCCCCcEEEeeCCc
Q psy8029 114 ITGLHKDIFKGTPQLESLNLRGNS 137 (693)
Q Consensus 114 i~~~~~~~~~~l~~L~~L~L~~n~ 137 (693)
|++..-..+..+++|++|++++|.
T Consensus 127 ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 127 VTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCHHHHHHHhcCCCCCEEECCCCC
Confidence 776555556667777777777764
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=1.5e-06 Score=78.63 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=48.9
Q ss_pred cccEEEccCCcCcccccccccCCCCCCcEEEeeCCc-ccccCcccCCCC----CCCcEEEcCCC-CCCccChhhhCCCCC
Q psy8029 102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS-ITELYSGVFQYV----PKLQVLDLGSN-DVAYMDPEIFKNLTS 175 (693)
Q Consensus 102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 175 (693)
+|++||+++| .|++..-..+.++++|++|+|++|. |++-.-..++.+ ++|++|+|++| ++++..-..+..+++
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 5666666666 5666555556666667777776663 444222222332 35777777766 366544444566777
Q ss_pred CCEEEccCCC
Q psy8029 176 LRILNLDHNQ 185 (693)
Q Consensus 176 L~~L~L~~n~ 185 (693)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777763
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=1.7e-05 Score=77.47 Aligned_cols=61 Identities=30% Similarity=0.361 Sum_probs=28.0
Q ss_pred CCCCcEEEccCCCCCCCCh--hhhccCccCceEeccCCcCccccCccCCC--CCCeEeCCCCccc
Q psy8029 320 CKKLVKLELQRNKLKYLPE--NLFESLKELYTLNLKNNQLENITSLVGLS--GLNSLDLSWNQLE 380 (693)
Q Consensus 320 ~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~--~L~~L~Ls~n~l~ 380 (693)
+++|++|+|++|.++.++. ..+..+++|+.|+|++|+|+++.....+. +|++|+|++|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 4455555555555554332 22334555555555555555443221111 4445555555444
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.43 E-value=8.5e-05 Score=68.50 Aligned_cols=87 Identities=10% Similarity=0.104 Sum_probs=40.0
Q ss_pred CCCCeEeCCCC-cccccc----ccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhH---
Q psy8029 367 SGLNSLDLSWN-QLEQIN----LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW--- 438 (693)
Q Consensus 367 ~~L~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--- 438 (693)
+.|++|+|++| .|.... ..++..-..|+.|+|++|.|...+.......+...+.|++|+|++|.|.+.....
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 34555555543 443221 1233334555555555555554432222333444555666666666655433222
Q ss_pred -HhcCCCCcEEECCCC
Q psy8029 439 -ISSMTSLKELDLRHN 453 (693)
Q Consensus 439 -~~~l~~L~~L~L~~N 453 (693)
+..-+.|++|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 223344555655543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.42 E-value=0.00011 Score=67.65 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=55.0
Q ss_pred cCCCCCCeEeCCCCcccccccccc----CCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCC---CcC--
Q psy8029 364 VGLSGLNSLDLSWNQLEQINLIAF----DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI---SSL-- 434 (693)
Q Consensus 364 ~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l---~~~-- 434 (693)
..-+.|+.|+|++|.|.+....++ ...+.|+.|+|++|.|...+.......+...+.|++|+|++|.. ...
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 344567777777777765443333 34567888888888877654433344566677788888886533 321
Q ss_pred --ChhHHhcCCCCcEEECCCCC
Q psy8029 435 --FDDWISSMTSLKELDLRHNN 454 (693)
Q Consensus 435 --~~~~~~~l~~L~~L~L~~N~ 454 (693)
....+..-+.|+.|+++.|.
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhCCCcCeEeccCCC
Confidence 12234455666666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=94.08 E-value=0.095 Score=42.22 Aligned_cols=48 Identities=27% Similarity=0.397 Sum_probs=35.7
Q ss_pred CccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCc
Q psy8029 88 NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS 137 (693)
Q Consensus 88 ~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~ 137 (693)
.++.|...+|.+|.+|+.+.+.. .++.|...+|.+|.+|+.+.+....
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCCC
Confidence 66777777777777787777776 3777777777777777777776543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.33 E-value=0.26 Score=39.57 Aligned_cols=47 Identities=28% Similarity=0.535 Sum_probs=33.0
Q ss_pred CcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCC
Q psy8029 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN 160 (693)
Q Consensus 113 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 160 (693)
.++.|...+|.+|.+|+.+.+..+ ++.|...+|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 566777777777777777777643 66677777777777777777654
Done!