RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8029
(693 letters)
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 74.5 bits (183), Expect = 1e-13
Identities = 122/495 (24%), Positives = 188/495 (37%), Gaps = 121/495 (24%)
Query: 90 GVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGN---------SITE 140
G +S F L +++ I LS+N+ + DIF + L LNL N SI
Sbjct: 83 GKISSAIF-RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141
Query: 141 LYS----------------GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
L + G F L+VLDLG N + P NLTSL L L N
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFS---SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198
Query: 185 QLI---------------------NLTRAIFNNVPNLRS---LDISGNNIS--ILPSGVF 218
QL+ NL+ I + L S LD+ NN++ I S
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--L 256
Query: 219 SDLRKLQTFYANSNRFQ-MFPKDLF-----------------------AEMKYLQVIKIS 254
+L+ LQ + N+ P +F +++ L+++ +
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL- 315
Query: 255 YHKDSLKELPSGLFANLPLLNTVILGESSIA-ELPSDL---------------------- 291
+ + ++P L +LP L + L + + E+P +L
Sbjct: 316 FSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374
Query: 292 -FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
+S N+ ++L + +P +L C+ L ++ LQ N + F L +Y L
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSL-GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433
Query: 351 NLKNNQLE-NITSLV-GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
++ NN L+ I S + L L L+ N+ L G L +DLS N +
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFG-GLPDSFGSKRLENLDLSRNQFS---- 488
Query: 409 QYGYSPLK--QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSI 465
G P K L + LS N++S D +SS L LDL HN S IP +
Sbjct: 489 --GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546
Query: 466 VSNKLTLDLSFNQIA 480
LDLS NQ++
Sbjct: 547 PVLSQ-LDLSQNQLS 560
Score = 69.9 bits (171), Expect = 3e-12
Identities = 94/347 (27%), Positives = 149/347 (42%), Gaps = 43/347 (12%)
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN-LTRAIFNNVPNLRSLDISGNNI 210
L LDL N++ P NL +L+ L L N+L + +IF+ + L SLD+S N++
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSL 296
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL--F 268
S + L+ L+ + SN F + LQV+++ +K S E+P L
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS-GEIPKNLGKH 355
Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
NL +L+ + + E+P L +S N+ ++L + +P +L C+ L ++ L
Sbjct: 356 NNLTVLD--LSTNNLTGEIPEGL-CSSGNLFKLILFSNSLEGEIPKSL-GACRSLRRVRL 411
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLE-------------------------NITSL 363
Q N + F L +Y L++ NN L+ +
Sbjct: 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471
Query: 364 VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP--LKQCVNL 421
G L +LDLS NQ LS L + LS N L+ G P L C L
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS------GEIPDELSSCKKL 525
Query: 422 ETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF-IPDQLDSIVS 467
+++LS+N++S S M L +LDL N S IP L ++ S
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572
Score = 66.0 bits (161), Expect = 4e-11
Identities = 95/367 (25%), Positives = 157/367 (42%), Gaps = 41/367 (11%)
Query: 94 PPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ 153
P L ++++ L NK + IF +L SL+L NS++ + + L+
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLE 311
Query: 154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS-I 212
+L L SN+ P +L L++L L N+ NL LD+S NN++
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371
Query: 213 LPSGVFS--DLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
+P G+ S +L KL F +NS ++ PK L A + L+ +++ + S ELPS F
Sbjct: 372 IPEGLCSSGNLFKLILF-SNSLEGEI-PKSLGA-CRSLRRVRLQDNSFS-GELPSE-FTK 426
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
LPL+ + + +++ + W+ ++ + L +K LP F K+L L+L R
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGS-KRLENLDLSR 484
Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFD 388
N+ SL EL L L N+L L L SLDLS NQL
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS-------- 536
Query: 389 GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKEL 448
+F E L ++LS N++S + ++ SL ++
Sbjct: 537 ----------GQIPASFSEMPV----------LSQLDLSQNQLSGEIPKNLGNVESLVQV 576
Query: 449 DLRHNNF 455
++ HN+
Sbjct: 577 NISHNHL 583
Score = 64.1 bits (156), Expect = 2e-10
Identities = 114/430 (26%), Positives = 174/430 (40%), Gaps = 93/430 (21%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRILNLDHNQLIN 188
S++L G +I+ S +P +Q ++L +N ++ P +IF +SLR LNL +N N
Sbjct: 73 SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN---N 129
Query: 189 LTRAIFN-NVPNLRSLDISGNNIS---ILPSGVFSDLR---------------------K 223
T +I ++PNL +LD+S N +S G FS L+
Sbjct: 130 FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189
Query: 224 LQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES 282
L+ SN+ P++L +MK L+ I + Y+ S E+P + L LN + L +
Sbjct: 190 LEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLS-GEIPYEI-GGLTSLNHLDLVYN 246
Query: 283 SIA-ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 341
++ +PS L N N+ + L +K +P ++F +KL+ L+L N L L
Sbjct: 247 NLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELV 304
Query: 342 ESLKELYTLNLKNNQL-----ENITSLVGL----------SG-----------LNSLDLS 375
L+ L L+L +N +TSL L SG L LDLS
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364
Query: 376 WNQL------------EQINLIAFDG------------LSSLNTVDLSHNLLTFDEYQYG 411
N L LI F SL V L N + E
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS-GELPSE 423
Query: 412 YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF-IPDQLDSIVSNKL 470
++ L V +++S N + + M SL+ L L N F +PD S
Sbjct: 424 FTKL-PLVYF--LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLE 478
Query: 471 TLDLSFNQIA 480
LDLS NQ +
Sbjct: 479 NLDLSRNQFS 488
Score = 48.7 bits (116), Expect = 1e-05
Identities = 91/318 (28%), Positives = 140/318 (44%), Gaps = 48/318 (15%)
Query: 195 NNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKI 253
NN + S+D+SG NIS S L +QT ++N+ P D+F L+ + +
Sbjct: 66 NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125
Query: 254 SYHKDSLKELPSGLFANLPLLNTVILGESSIA-ELPSDL-FWNSTNITNI---VLTGH-- 306
S + + +P G ++P L T+ L + ++ E+P+D+ ++S + ++ VL G
Sbjct: 126 SNNNFT-GSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKL-KYLPENL--FESLKELYTLNLKNNQLENITSL 363
LT+L S F L L N+L +P L +SLK +Y L N E +
Sbjct: 182 NSLTNLTSLEF--------LTLASNQLVGQIPRELGQMKSLKWIY-LGYNNLSGEIPYEI 232
Query: 364 VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------------------F 405
GL+ LN LDL +N L + L +L + L N L+
Sbjct: 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292
Query: 406 DEYQYGYSP--LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF-IPDQL 462
D G P + Q NLE ++L N + ++S+ L+ L L N FS IP L
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352
Query: 463 DSIVSNKLT-LDLSFNQI 479
N LT LDLS N +
Sbjct: 353 GK--HNNLTVLDLSTNNL 368
Score = 38.7 bits (90), Expect = 0.012
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 95 PYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154
P G ++++ LS N+ +G +L L L N ++ KL
Sbjct: 469 PDSFGSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527
Query: 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI--SI 212
LDL N ++ P F + L L+L NQL NV +L ++IS N++ S+
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587
Query: 213 LPSGVF 218
+G F
Sbjct: 588 PSTGAF 593
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 56.8 bits (138), Expect = 2e-10
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
+L+ L+L +N+L + F +PNL+ LD+SGNN++ + FS L L++ + N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 55.6 bits (135), Expect = 4e-10
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
L+ LDL +N + + FK L +L++L+L N L +++ F+ +P+LRSLD+SGNN+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 55.2 bits (134), Expect = 5e-10
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
L+SL+L N +T + G F+ +P L+VLDL N++ + PE F L SLR L+L N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 47.5 bits (114), Expect = 3e-07
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 347 LYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
L +L+L NN+L I + GL L LDLS N L I+ AF GL SL ++DLS N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 46.8 bits (112), Expect = 5e-07
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND 161
+K + LS+N+ +T + FKG P L+ L+L GN++T + F +P L+ LDL N+
Sbjct: 2 LKSLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Score = 45.2 bits (108), Expect = 2e-06
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQL 379
L L+L N+L +P+ F+ L L L+L N L +I + GL L SLDLS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 43.7 bits (104), Expect = 7e-06
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 392 SLNTVDLSHNLLTF-DEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450
+L ++DLS+N LT + K NL+ ++LS N ++S+ + S + SL+ LDL
Sbjct: 1 NLKSLDLSNNRLTVIPD-----GAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDL 55
Query: 451 RHNNF 455
NN
Sbjct: 56 SGNNL 60
Score = 43.3 bits (103), Expect = 9e-06
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
NL++++LS NR++ + D + +LK LDL NN + I + S + + +LDLS N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 41.4 bits (98), Expect = 5e-05
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
+LT +P F+ L L+L N L + F L L +L+L N L
Sbjct: 11 RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 38.7 bits (91), Expect = 4e-04
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY 255
NL+SLD+S N ++++P G F L L+ + N + F+ + L+ + +S
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57
Score = 38.3 bits (90), Expect = 4e-04
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
L SLDLS N+L I AF GL +L +DLS N LT + +L +++LS
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA----FSGLPSLRSLDLS 56
Query: 428 YNRI 431
N +
Sbjct: 57 GNNL 60
Score = 37.9 bits (89), Expect = 7e-04
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 87 SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSI 138
+ + V+ F GL +K + LS N +T + + F G P L SL+L GN++
Sbjct: 10 NRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 29.8 bits (68), Expect = 0.52
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
L +P G F LP L + L +++ + + F ++ ++ L+G
Sbjct: 11 RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 56.2 bits (135), Expect = 4e-08
Identities = 58/237 (24%), Positives = 113/237 (47%), Gaps = 31/237 (13%)
Query: 148 YVP-KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206
+P ++ L L +N++ + + N+ +L + NQL ++ + + + + +++S
Sbjct: 196 CIPEQITTLILDNNELKSLPENLQGNIKTLYA---NSNQLTSIPATLPDTI---QEMELS 249
Query: 207 GNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG 266
N I+ LP + S L+ L F+ N+ P++L E++YL V + +S++ LP+
Sbjct: 250 INRITELPERLPSALQSLDLFH---NKISCLPENLPEELRYLSV-----YDNSIRTLPAH 301
Query: 267 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 326
L + + LN +S+ LP L + G LTSLP++L +L L
Sbjct: 302 LPSGITHLNVQ---SNSLTALPETLPPG----LKTLEAGENALTSLPASL---PPELQVL 351
Query: 327 ELQRNKLKYLPENLFESLKELY-TLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQI 382
++ +N++ LPE L ++ L + N N EN+ + L + S N L ++
Sbjct: 352 DVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP-----AALQIMQASRNNLVRL 403
Score = 45.5 bits (107), Expect = 9e-05
Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 22/156 (14%)
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLS 367
LT++P+ + +++ L L N+LK LPENL ++K LY +NQL +I + +
Sbjct: 189 GLTTIPACI---PEQITTLILDNNELKSLPENLQGNIKTLYA---NSNQLTSIPATLP-D 241
Query: 368 GLNSLDLSWNQLEQINLIAFDGL-SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
+ ++LS N++ ++ + L S+L ++DL HN ++ P L +++
Sbjct: 242 TIQEMELSINRITELP----ERLPSALQSLDLFHNKIS-------CLPENLPEELRYLSV 290
Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
N I +L S +T L+++ N+ + +P+ L
Sbjct: 291 YDNSIRTLPAHLPSGIT---HLNVQSNSLTALPETL 323
Score = 42.4 bits (99), Expect = 8e-04
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
++ + L HNK I+ L +++ + L L++ NSI L + + + L V SN +
Sbjct: 264 LQSLDLFHNK-ISCLPENLPEE---LRYLSVYDNSIRTLPAHLPSGITHLNVQ---SNSL 316
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
+ PE L+ L N L +L ++ P L+ LD+S N I++LP +
Sbjct: 317 TAL-PETLP--PGLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPETLPP--- 367
Query: 223 KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL 267
+ T + N P++L A ++ +Q +++L LP L
Sbjct: 368 TITTLDVSRNALTNLPENLPAALQIMQA-----SRNNLVRLPESL 407
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 51.9 bits (124), Expect = 7e-07
Identities = 65/209 (31%), Positives = 99/209 (47%), Gaps = 32/209 (15%)
Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
LT+L L+LD+N + ++ I NL+ LD+S N I LPS + +L L+ +
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLS 171
Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
N PK L +NL LN + L + I++LP +
Sbjct: 172 FNDLSDLPK---------------------------LLSNLSNLNNLDLSGNKISDLPPE 204
Query: 291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
+ + + + + L S+L + K L LEL NKL+ LPE++ +L L TL
Sbjct: 205 I--ELLSALEELDLSNNSIIELLSSL-SNLKNLSGLELSNNKLEDLPESI-GNLSNLETL 260
Query: 351 NLKNNQLENITSLVGLSGLNSLDLSWNQL 379
+L NNQ+ +I+SL L+ L LDLS N L
Sbjct: 261 DLSNNQISSISSLGSLTNLRELDLSGNSL 289
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 49.8 bits (119), Expect = 3e-06
Identities = 33/83 (39%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
L+S+NL GNSI + L+VLDL N PE LTSLRILNL+ N L
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
Query: 187 IN----------LTRAIFNNVPN 199
L RA FN N
Sbjct: 503 SGRVPAALGGRLLHRASFNFTDN 525
Score = 38.3 bits (89), Expect = 0.014
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 421 LETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQI 479
L++INLS N I + S+TSL+ LDL +N+F+ IP+ L + S ++ L+L+ N +
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI-LNLNGNSL 502
Query: 480 A 480
+
Sbjct: 503 S 503
Score = 35.6 bits (82), Expect = 0.092
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
LQ ++L N + P ++TSL +L+L +N + +LR L+++GN++
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502
Query: 211 S 211
S
Sbjct: 503 S 503
Score = 31.7 bits (72), Expect = 1.7
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 350 LNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
L L N L + L L S++LS N + + ++SL +DLS+N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN--- 479
Query: 408 YQYGYSP--LKQCVNLETINLSYNRIS 432
G P L Q +L +NL+ N +S
Sbjct: 480 ---GSIPESLGQLTSLRILNLNGNSLS 503
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 49.0 bits (116), Expect = 8e-06
Identities = 77/268 (28%), Positives = 119/268 (44%), Gaps = 58/268 (21%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
P+L +L + GN +T L P L L + SN + ++ P + L L I NQ
Sbjct: 242 PELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHL-PALPSGLCKLWIFG---NQ 293
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
L +L P L+ L +S N ++ LP+ + S+L KL + P L
Sbjct: 294 LTSLPVL----PPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPTLPSGL---- 344
Query: 246 KYLQVIKISYHK-DSLKELPSGLF---------ANLPLLNT-----VILGE--SSIAELP 288
Q + +S ++ SL LPS L+ +LP L + ++ G +S+ LP
Sbjct: 345 ---QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP 401
Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
S+L ++++G++ LTSLP L+ L + RN+L LPE+L L
Sbjct: 402 SEL-------KELMVSGNR-LTSLPML----PSGLLSLSVYRNQLTRLPESLIH-LSSET 448
Query: 349 TLNLKNN--------QLENITSLVGLSG 368
T+NL+ N L ITS G SG
Sbjct: 449 TVNLEGNPLSERTLQALREITSAPGYSG 476
Score = 40.1 bits (93), Expect = 0.004
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 43/212 (20%)
Query: 198 PNLRSLDISGNNIS---ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKIS 254
P LR+L++SGN ++ +LP G L +L F P L ++
Sbjct: 242 PELRTLEVSGNQLTSLPVLPPG----LLELSIFSNPLTHLPALPSGL------CKLWIFG 291
Query: 255 YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL--FWNSTNITNIVLTGHKKLTSL 312
SL LP GL L + + + +S+ LPS+L W N +LTSL
Sbjct: 292 NQLTSLPVLPPGL-QELSVSDNQL---ASLPALPSELCKLWAYNN----------QLTSL 337
Query: 313 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSL 372
P+ L +L + N+L LP ELY L NN+L ++ +L SGL L
Sbjct: 338 PTL----PSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLPALP--SGLKEL 387
Query: 373 DLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
+S N+L + ++ S L + +S N LT
Sbjct: 388 IVSGNRLTSLPVLP----SELKELMVSGNRLT 415
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 41.4 bits (98), Expect = 2e-04
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
S+ + F+ L ++ L SS+ + S F+N +++T+I + LTS+ F
Sbjct: 20 SSVTSIGEYAFSGCTSLKSITLP-SSLTSIGSYAFYNCSSLTSITI--PSSLTSIGEYAF 76
Query: 318 RDCKKLVKLELQRNKLKYLPENLFE--SLKELY 348
+C L + + + L + F SLK +
Sbjct: 77 SNCSSLTSITIP-SNLTTIGSYAFSNCSLKSIT 108
Score = 39.4 bits (93), Expect = 0.001
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 9/125 (7%)
Query: 199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD 258
+L S+ I ++++ + FS L++ S+ F L I I
Sbjct: 12 SLTSITIP-SSVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIP---S 66
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
SL + F+N L ++ + S++ + S F N ++ +I + +T++ F
Sbjct: 67 SLTSIGEYAFSNCSSLTSITI-PSNLTTIGSYAFSN-CSLKSITIP--SSVTTIGDYAFS 122
Query: 319 DCKKL 323
+C L
Sbjct: 123 NCSSL 127
Score = 38.3 bits (90), Expect = 0.002
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 194 FNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
F+ +L+S+ + ++++ + S F + L + S+ + F+ L I I
Sbjct: 30 FSGCTSLKSITLP-SSLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSNCSSLTSITI 87
Query: 254 SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 299
+L + S F+N L + I SS+ + F N +++
Sbjct: 88 PS---NLTTIGSYAFSNCSLKSITI--PSSVTTIGDYAFSNCSSLK 128
Score = 32.1 bits (74), Expect = 0.27
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
G + L S+ L + L I AF SSL ++ + +L + EY + C +L +I
Sbjct: 32 GCTSLKSITLP-SSLTSIGSYAFYNCSSLTSITIPSSLTSIGEYAF-----SNCSSLTSI 85
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPD 460
+ N ++++ S+ SLK + + ++ + I D
Sbjct: 86 TIPSN-LTTIGSYAFSN-CSLKSITI-PSSVTTIGD 118
Score = 27.9 bits (63), Expect = 8.3
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 21/129 (16%)
Query: 73 NITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLN 132
++T+I AFS S +K I L + +T + F L S+
Sbjct: 21 SVTSIGEYAFSGCTS---------------LKSITLPSS--LTSIGSYAFYNCSSLTSIT 63
Query: 133 LRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRA 192
+ +S+T + F L + + SN + + F N SL+ + + + + +
Sbjct: 64 I-PSSLTSIGEYAFSNCSSLTSITIPSN-LTTIGSYAFSN-CSLKSITI-PSSVTTIGDY 119
Query: 193 IFNNVPNLR 201
F+N +L+
Sbjct: 120 AFSNCSSLK 128
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 43.5 bits (103), Expect = 2e-04
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 23/194 (11%)
Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTL---NLKNNQLEN------ITSLVGLS 367
L +L+L N L + ESL +L L NN L + L L
Sbjct: 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136
Query: 368 -GLNSLDLSWNQLEQINLI----AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE 422
L L L N+LE + A L ++L++N + + LK NLE
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196
Query: 423 TINLSYNRI----SSLFDDWISSMTSLKELDLRHNNFSFIP-----DQLDSIVSNKLTLD 473
++L+ N + +S + ++S+ SL+ L+L NN + L S + LTL
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256
Query: 474 LSFNQIAIVDLRTL 487
LS N I + L
Sbjct: 257 LSCNDITDDGAKDL 270
Score = 43.1 bits (102), Expect = 3e-04
Identities = 48/165 (29%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 318 RDCK-KLVKLELQRNKLKYLP----ENLFESLKELYTLNLKNNQL--ENITSLV----GL 366
+D L KL L RN+L+ + ++L LNL NN + I +L
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192
Query: 367 SGLNSLDLSWNQLEQINLIAFDG----LSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNL 421
L LDL+ N L A L SL ++L N LT + L ++L
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252
Query: 422 ETINLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQL 462
T++LS N I+ + ++ SL ELDLR N F QL
Sbjct: 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297
Score = 42.3 bits (100), Expect = 6e-04
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 121 IFKGTPQLESLNLRGNSITE----LYSGVFQYVPKLQVLDLGSN-----DVAYMDPEIFK 171
K LE L+L N +T+ + + L+VL+LG N A + +
Sbjct: 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247
Query: 172 NLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
SL L+L N + +L + +L LD+ GN
Sbjct: 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFG 291
Score = 38.1 bits (89), Expect = 0.010
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 126 PQLESLNLRGNSIT----ELYSGVFQYVPKLQVLDLGSNDVAYMDP------EIFKNLTS 175
P LE L L N + E + + L+ L+L +N + D E K +
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG--DAGIRALAEGLKANCN 194
Query: 176 LRILNLDHNQL----INLTRAIFNNVPNLRSLDISGNNIS 211
L +L+L++N L + ++ +L L++ NN++
Sbjct: 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234
Score = 35.0 bits (81), Expect = 0.12
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 18/119 (15%)
Query: 126 PQLESLNLRGNSITELYSGV------FQYVPKLQVLDLGSNDVAYMDPEIFKNLT---SL 176
P L+ L L N + G+ LQ LDL N + + ++L SL
Sbjct: 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL 110
Query: 177 RILNLDHNQLIN-----LTRAIFNNVPNLRSLDISGNNISILP----SGVFSDLRKLQT 226
+ L L++N L + L + + + P L L + N + + R L+
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE 169
Score = 28.9 bits (65), Expect = 9.0
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 120 DIFKGTPQLESLNLRGNSIT-----ELYSGVFQYVPKLQVLDLGSNDV 162
+ LE LNL N++T L S + L L L ND+
Sbjct: 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 36.3 bits (85), Expect = 0.002
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
NLET++LS N+I+ L +S++ +L+ LDL N + +
Sbjct: 2 NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLS 39
Score = 35.5 bits (83), Expect = 0.003
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 345 KELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIA 386
L TL+L NNQ+ ++ L L L +LDLS N++ ++ ++
Sbjct: 1 TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLS 42
Score = 34.4 bits (80), Expect = 0.009
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL 363
L L+L N++ LP +L L TL+L N++ +++ L
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSPL 41
Score = 33.6 bits (78), Expect = 0.015
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
T+L L+L +NQ+ +L +N+PNL +LD+SGN I+ L
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 31.3 bits (72), Expect = 0.11
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
L+ LDL +N + + P NL +L L+L N++ +L+
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 29.8 bits (68), Expect = 0.39
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
LE+L+L N IT+L +P L+ LDL N + + P
Sbjct: 1 TNLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40
Score = 29.0 bits (66), Expect = 0.59
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434
+L T+DLS+N +T PL NLET++LS N+I+ L
Sbjct: 2 NLETLDLSNNQIT------DLPPLSNLPNLETLDLSGNKITDL 38
Score = 28.2 bits (64), Expect = 1.4
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 369 LNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
L +LDLS NQ+ + ++ L +L T+DLS N +T
Sbjct: 3 LETLDLSNNQITDLPPLS--NLPNLETLDLSGNKIT 36
>gnl|CDD|201808 pfam01462, LRRNT, Leucine rich repeat N-terminal domain. Leucine
Rich Repeats pfam00560 are short sequence motifs present
in a number of proteins with diverse functions and
cellular locations. Leucine Rich Repeats are often
flanked by cysteine rich domains. This domain is often
found at the N-terminus of tandem leucine rich repeats.
Length = 28
Score = 32.6 bits (75), Expect = 0.026
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLP 606
CPA C C S V+CS LT +P LP
Sbjct: 1 ACPAPCVC------SGTVVDCSGRGLTEVPRDLP 28
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 31.9 bits (74), Expect = 0.047
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 198 PNLRSLDISGNNISILPSGVFSD 220
PNLR LD+S N +S LP G F
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQG 24
Score = 29.6 bits (68), Expect = 0.28
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 442 MTSLKELDLRHNNFSFIPDQL 462
+ +L+ELDL +N S +P
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 28.9 bits (66), Expect = 0.49
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +LR L+L +NQL +L F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 25.8 bits (58), Expect = 6.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 126 PQLESLNLRGNSITELYSGVFQ 147
P L L+L N ++ L G FQ
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 31.9 bits (74), Expect = 0.047
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 198 PNLRSLDISGNNISILPSGVFSD 220
PNLR LD+S N +S LP G F
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQG 24
Score = 29.6 bits (68), Expect = 0.28
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 442 MTSLKELDLRHNNFSFIPDQL 462
+ +L+ELDL +N S +P
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 28.9 bits (66), Expect = 0.49
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 173 LTSLRILNLDHNQLINLTRAIFNN 196
L +LR L+L +NQL +L F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 25.8 bits (58), Expect = 6.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 126 PQLESLNLRGNSITELYSGVFQ 147
P L L+L N ++ L G FQ
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|214470 smart00013, LRRNT, Leucine rich repeat N-terminal domain.
Length = 33
Score = 31.1 bits (71), Expect = 0.11
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLP 606
CPA C C S +V+CS LT +P LP
Sbjct: 1 ACPAPCNC------SGTAVDCSGRGLTEVPLDLP 28
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1. Amn1
has been functionally characterized in Saccharomyces
cerevisiae as a component of the Antagonist of MEN
pathway (AMEN). The AMEN network is activated by MEN
(mitotic exit network) via an active Cdc14, and in turn
switches off MEN. Amn1 constitutes one of the
alternative mechanisms by which MEN may be disrupted.
Specifically, Amn1 binds Tem1 (Termination of M-phase, a
GTPase that belongs to the RAS superfamily), and
disrupts its association with Cdc15, the primary
downstream target. Amn1 is a leucine-rich repeat (LRR)
protein, with 12 repeats in the S. cerevisiae ortholog.
As a negative regulator of the signal transduction
pathway MEN, overexpression of AMN1 slows the growth of
wild type cells. The function of the vertebrate members
of this family has not been determined experimentally,
they have fewer LRRs that determine the extent of this
model.
Length = 226
Score = 31.9 bits (73), Expect = 0.74
Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 30/152 (19%)
Query: 66 ISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEIT--GLHKDIFK 123
IS ++ + + L P + + +K ++L +K I GL + +
Sbjct: 19 ISQLLRILHSGLEWLELYMCP--ISDPPLDQLSNCNKLKKLILPGSKLIDDEGL-IALAQ 75
Query: 124 GTPQLESLNLRGNS-ITELYSGVFQ---YVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
P L+ L+LR IT+ SG+ PKLQ ++LG + ++ +T + +
Sbjct: 76 SCPNLQVLDLRACENITD--SGIVALATNCPKLQTINLGRHRNGHL-------ITDVSL- 125
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
A+ N L+++ +G +++
Sbjct: 126 -----------SALGKNCTFLQTVGFAGCDVT 146
>gnl|CDD|238283 cd00512, MM_CoA_mutase, Coenzyme B12-dependent-methylmalonyl
coenzyme A (CoA) mutase (MCM)-like family; contains
proteins similar to MCM, and the large subunit of
Streptomyces coenzyme B12-dependent isobutyryl-CoA
mutase (ICM). MCM catalyzes the isomerization of
methylmalonyl-CoA to succinyl-CoA. The reaction proceeds
via radical intermediates beginning with a
substrate-induced homolytic cleavage of the Co-C bond of
coenzyme B12 to produce cob(II)alamin and the
deoxyadenosyl radical. MCM plays an important role in
the conversion of propionyl-CoA to succinyl-CoA during
the degradation of propionate for the Krebs cycle. In
higher animals, MCM is involved in the breakdown of
odd-chain fatty acids, several amino acids, and
cholesterol. Methylobacterium extorquens MCM
participates in the glyoxylate regeneration pathway. In
M. extorquens, MCM forms a complex with MeaB; MeaB may
protect MCM from irreversible inactivation. In some
bacteria, MCM is involved in the reverse metabolic
reaction, the rearrangement of succinyl-CoA to
methylmalonyl-CoA. Examples include Propionbacterium
shermanni MCM during propionic acid fermentation, E.coli
MCM in a pathway for the conversion of succinate to
propionate and Streptomyces MCM in polyketide
biosynthesis. P. shermanni and Streptomyces
cinnamonensis MCMs are alpha/beta heterodimers, with
both subunits being homologous members of this family.
It has been shown for P. shermanni MCM that only the
alpha subunit binds coenzyme B12 and substrates. Human
MCM is a homodimer with two active sites. Mouse and
E.coli MCMs are also homodimers. ICM from S.
cinnamonensis is comprised of a large and a small
subunit. The holoenzyme appears to be an alpha2beta2
heterotetramer with up to 2 molecules of coenzyme B12
bound. The small subunit binds coenzyme B12. ICM
catalyzes the reversible rearrangement of n-butyryl-CoA
to isobutyryl-CoA (intermediates in fatty acid and
valine catabolism, which in S. cinnamonensis can be
converted to methylmalonyl-CoA and used in polyketide
synthesis). In humans, impaired activity of MCM results
in methylmalonic aciduria, a disorder of propionic acid
metabolism.
Length = 399
Score = 31.3 bits (71), Expect = 1.8
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 607 VTYE--DKKATSIQLILHNNSINHFLE------SPPESYKLITDL 643
V E A+ + L N+ I ++ P S +++ D+
Sbjct: 98 VVAERQGVDASDLAGTLQNDIIKEYIAQGTYIFPPEPSLRVLGDI 142
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS. This
protein, TorS, is part of a regulatory system for the
torCAD operon that encodes the pterin molybdenum
cofactor-containing enzyme trimethylamine-N-oxide (TMAO)
reductase (TorA), a cognate chaperone (TorD), and a
penta-haem cytochrome (TorC). TorS works together with
the inducer-binding protein TorT and the response
regulator TorR. TorS contains histidine kinase ATPase
(pfam02518), HAMP (pfam00672), phosphoacceptor
(pfam00512), and phosphotransfer (pfam01627) domains and
a response regulator receiver domain (pfam00072) [Signal
transduction, Two-component systems].
Length = 968
Score = 30.9 bits (70), Expect = 2.8
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 441 SMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI----AIVDLRTLEIKAAAQDP 496
S+ +L EL + + + + I+ L LS + A + + E+ AAQ+
Sbjct: 92 SLKALGELPFNEDLLARLEVLVKDIIDTLAQLGLSVGERITLQAQLQQLSRELSEAAQEI 151
Query: 497 NEDS-TMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTD 547
+E S + VA ++ I + N + I YDLI VYQ L+ + +
Sbjct: 152 SELSQSQVANASTIALANVSGI------YDLI---ESGKNDQVYQALDDLIE 194
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 30.7 bits (69), Expect = 3.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 415 LKQCVNLETINLSYNRISSLF----DDWISSMTSLKELDLRHNN 454
L +C L+ ++LS N S F D ISS T L L L +NN
Sbjct: 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKL-NNN 130
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 30.0 bits (68), Expect = 4.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 63 ENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDG 99
E F LF K ++ +N LA + P GV PY +G
Sbjct: 302 EWFRELFGKEDVEALNELAEQSPPGAEGVTFLPYLNG 338
>gnl|CDD|192286 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interacting domain).
UPF1 is an essential RNA helicase that detects mRNAs
containing premature stop codons and triggers their
degradation. This domain contains 3 zinc binding motifs
and forms interactions with another protein (UPF2) that
is also involved nonsense-mediated mRNA decay (NMD).
Length = 152
Score = 28.9 bits (65), Expect = 5.2
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITEL 141
H V H++ S +KE++ LH + G LE N ++ L
Sbjct: 35 HIVNHLVKSKHKEVS-LHPESPLGDTVLECYNCGSKNVFLL 74
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 30.1 bits (67), Expect = 6.2
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 204 DISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL--QVIKISYHKDSLK 261
DIS N IS + G+ ++L L + N F+ L ++ + +K+ + +L
Sbjct: 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG-LARLPRWAEEKGVKVRQPEAALC 59
Query: 262 ELPSGLFANLPLLNTVIL----GESSIAELP 288
P L A PLL +L E +A L
Sbjct: 60 AGPGAL-AGQPLLGIPLLDSGCDEEYVACLK 89
>gnl|CDD|193251 pfam12775, AAA_7, P-loop containing dynein motor region D3. the
380 kDa motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules,
of which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This particular family is the D3 and is an ATP binding
site.
Length = 272
Score = 29.1 bits (65), Expect = 8.0
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL---QRNKLKYLPENLFESLKELYTLNL 352
+ I NI+LT H L S+ + L + LV L Q+ +LP ++K Y NL
Sbjct: 186 STIYNIILTQHLALGSVSAALQKSSPPLVDAALALHQKIATTFLP----TAIKFHYVFNL 241
Query: 353 KNNQLENITSLVGLSGLNSLDLSWN 377
++ L NI + S + L W+
Sbjct: 242 RD--LSNIFQGLLFSSVECLKSPWD 264
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,312,149
Number of extensions: 3364494
Number of successful extensions: 2811
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2658
Number of HSP's successfully gapped: 105
Length of query: 693
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 589
Effective length of database: 6,324,786
Effective search space: 3725298954
Effective search space used: 3725298954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.3 bits)