RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8029
(693 letters)
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 229 bits (587), Expect = 4e-66
Identities = 99/480 (20%), Positives = 190/480 (39%), Gaps = 38/480 (7%)
Query: 67 SLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKG-- 124
+++ L S++ + SP F + + + L++ + L + +
Sbjct: 163 EELDIFANSSLKKLELSSN--QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220
Query: 125 TPQLESLNLRGNSITELYSGVFQ--YVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
+ +L+L + ++ + F L +LDL N++ + + F L L L+
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280
Query: 183 HNQLINLTRAIFNNVPNLRSLD---------ISGNNISILPSGVFSDLRKLQTFYANSNR 233
+N + +L + + N+R L+ IS ++ + F L+ L+ N
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL--LNTVILGESSIAELPSDL 291
++F + L+ + +S SL+ L + F +L L+ + L ++ I+++ SD
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
F ++ + L ++ L +R + + ++ L NK L N F + L L
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 352 LKNNQLENITS----LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
L+ L+N+ S L L LDLS N + IN +GL L +DL HN L
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520
Query: 408 YQYG----YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD 463
LK +L +NL N + + + LK +DL NN + +P +
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580
Query: 464 SIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSN 523
+ + +L+L N I V+ + R+ + + NP C C +
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFGP-------------AFRNLTELDMRFNPFDCTCES 627
Score = 220 bits (563), Expect = 9e-63
Identities = 95/448 (21%), Positives = 169/448 (37%), Gaps = 38/448 (8%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
I+ + P + LS F + + L N I + + F
Sbjct: 60 TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFV 118
Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK--NLTSLRILNL 181
L +L+L N ++ G + LQ L L +N + + E +SL+ L L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSD--LRKLQTFYANSNRFQMFP 238
NQ+ + F+ + L L ++ + L + + ++ ++++
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 239 KDLFAEMKY--LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 296
F +K+ L ++ +SY+ L + + FA LP L L ++I L S
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296
Query: 297 NITNIVLTG--------HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
N+ + L L + F+ K L L ++ N + + N+F L L
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 349 TLNLKNNQLENIT------SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
L+L N+ T + S L+ L+L+ N++ +I AF L L +DL N
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Query: 403 LTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
+ + + N+ I LSYN+ L + + + SL+ L LR +
Sbjct: 417 IGQ---ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473
Query: 463 DSIVSNK--LTLDLSFNQIAIVDLRTLE 488
+ LDLS N IA ++ LE
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLE 501
Score = 214 bits (548), Expect = 1e-60
Identities = 86/389 (22%), Positives = 156/389 (40%), Gaps = 23/389 (5%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
SH K +T + D+ + LNL N + L + F +L LD+G N ++ ++P
Sbjct: 11 CSHLK-LTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
E+ + L L++LNL HN+L L+ F NL L + N+I + + F + L T
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL--LNTVILGESSIA 285
+ N +++ LQ + +S + ++ L S L + L + I
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSN--NKIQALKSEELDIFANSSLKKLELSSNQIK 184
Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC--KKLVKLELQRNKLKYLPENLFES 343
E F + + L + SL L + + L L ++L F
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244
Query: 344 LK--ELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLS 399
LK L L+L N L + S L L L +N ++ + + GL ++ ++L
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Query: 400 HNLLTFDEY-----QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
+ + + LE +N+ N I + + + + +LK L L ++
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364
Query: 455 FSFI---PDQLDSIVSNKL-TLDLSFNQI 479
S + S+ + L L+L+ N+I
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKI 393
Score = 182 bits (464), Expect = 4e-49
Identities = 80/379 (21%), Positives = 140/379 (36%), Gaps = 48/379 (12%)
Query: 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
T E + +T++ + + VL+L N + + F + L L++ N
Sbjct: 3 TVSHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59
Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAE 244
+ L + +P L+ L++ N +S L F+ L + SN Q + F +
Sbjct: 60 TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
K L + +S+ + L G L L ++L + I L S+ N
Sbjct: 120 QKNLITLDLSH--NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN------- 170
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL-----EN 359
L KLEL N++K F ++ L+ L L N QL E
Sbjct: 171 ----------------SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214
Query: 360 ITSLVGLSGLNSLDLSWNQLEQINLIAFDGL--SSLNTVDLSHNLLTFDEYQYGYSPLKQ 417
+ + + + +L LS +QL + F GL ++L +DLS+N L
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG----NDSFAW 270
Query: 418 CVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN---------NFSFIPDQLDSIVSN 468
LE L YN I LF + + +++ L+L+ + + I D +
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330
Query: 469 KLTLDLSFNQIAIVDLRTL 487
L++ N I +
Sbjct: 331 LEHLNMEDNDIPGIKSNMF 349
Score = 95.8 bits (239), Expect = 1e-20
Identities = 68/335 (20%), Positives = 112/335 (33%), Gaps = 55/335 (16%)
Query: 323 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLE 380
+ KL +P++L ++ LNL +NQL + + S L SLD+ +N +
Sbjct: 6 HEVADCSHLKLTQVPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS 440
++ L L ++L HN L+ C NL ++L N I + ++
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSD----KTFAFCTNLTELHLMSNSIQKIKNNPFV 118
Query: 441 SMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDS 500
+L LDL HN S + N L LS N+I + E
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK------------SEELD 166
Query: 501 TMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGIN 560
S + L+ N I + + L V +
Sbjct: 167 IFANSSLKKLELSSNQI------KEFSPGCFHAIG------------RLFGLFLNNVQLG 208
Query: 561 SVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQ-L 619
E L C SI +++ S++ L+ T+ K T++ L
Sbjct: 209 PSLTEKL------------CLELANTSIRNLSLSNSQLSTTS---NTTFLGLKWTNLTML 253
Query: 620 ILHNNSINHFLESPPESYKLITDLDLSYNNISHVD 654
L N++N + L YNNI H+
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288
Score = 39.2 bits (92), Expect = 0.005
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 417 QC-VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS 475
+C V+ E + S+ +++ + DD T++ L+L HN +P + S +LD+
Sbjct: 1 KCTVSHEVADCSHLKLTQVPDD---LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57
Query: 476 FNQI 479
FN I
Sbjct: 58 FNTI 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 224 bits (572), Expect = 1e-64
Identities = 71/387 (18%), Positives = 150/387 (38%), Gaps = 11/387 (2%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
+ + S N + + F L L+L I ++ FQ +L L L +N +
Sbjct: 35 TECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
+M +L+ L + ++ +N L SL + N+IS +
Sbjct: 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153
Query: 223 KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES 282
KL+ +N K+ + ++ + ++ + + + + G F + + G
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213
Query: 283 SIAELPSDLFWNS-TNITNIVLTGHKKLTSLPSTLFRDCKK--LVKLELQRNKLKYLPEN 339
++ + L ++ ++ + +F + + + LQ++ + N
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTF-EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 340 LFESLKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
F L L+L L + + LVGLS L L LS N+ E + I+ SL + +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL--FDDWISSMTSLKELDLRHNNFS 456
N + G L+ NL ++LS++ I + + + +++ L+ L+L +N
Sbjct: 333 KGNTKRLEL---GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389
Query: 457 FIPDQLDSIVSNKLTLDLSFNQIAIVD 483
+ + LDL+F ++ + D
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKD 416
Score = 216 bits (551), Expect = 1e-61
Identities = 102/485 (21%), Positives = 188/485 (38%), Gaps = 43/485 (8%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
I++I+ + N + ++ + P +K + +N I L K+
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMS 174
Query: 124 GTPQLE--SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN--LTSLRIL 179
Q SLNL GN I + G F Q L+ G + + KN + SL +
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233
Query: 180 NLDHNQLINLTRAIFNNVP--NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMF 237
+ +++ A+F + ++ S+++ + + S F LQ +
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293
Query: 238 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI-AELPSDLFWNST 296
P L + L+ + +S +K + L +N P L + + ++ EL + N
Sbjct: 294 PSGLVG-LSTLKKLVLSANK--FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 297 NITNIVLTGHKKLTSLPST--LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
N+ + L H + + R+ L L L N+ L F+ +L L+L
Sbjct: 351 NLRELDL-SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 355 NQLENITS---LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYG 411
+L+ + L L L+LS + L+ + FDGL +L ++L N Q
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK- 468
Query: 412 YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT 471
+ L+ LE + LS+ +SS+ +S+ + +DL HN + + S + +
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG-IY 527
Query: 472 LDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVS 531
L+L+ N I+I+ L I + L NP+ C CSN + +
Sbjct: 528 LNLASNHISIILPSLLPIL--------------SQQRTINLRQNPLDCTCSNIYFLEWYK 573
Query: 532 KKMTK 536
+ M K
Sbjct: 574 ENMQK 578
Score = 215 bits (550), Expect = 2e-61
Identities = 93/428 (21%), Positives = 169/428 (39%), Gaps = 28/428 (6%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
I I+ F + + ++ G +KH+ I+ +
Sbjct: 68 QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLH 126
Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD- 182
LESL L N I+ + KL+VLD +N + Y+ E +L L+L+
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186
Query: 183 -HNQLINLTRAIFNNVPNLRSLDISGNNIS--ILPSGVFSDLRKLQTFYANSNRFQMFPK 239
N + + F++ +SL+ G I S ++ L +
Sbjct: 187 NGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245
Query: 240 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 299
+F + + V I+ K + S F L + L + ++ELPS L + +
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV-GLSTLK 304
Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 358
+VL+ + K +L + L L ++ N + L E+L+ L L+L ++ +E
Sbjct: 305 KLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 359 NIT----SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP 414
L LS L SL+LS+N+ + AF L +DL+ L + Q SP
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ---SP 420
Query: 415 LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSN--KL-T 471
+ L+ +NLS++ + + + +L+ L+L+ N+F Q + + +L
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480
Query: 472 LDLSFNQI 479
L LSF +
Sbjct: 481 LVLSFCDL 488
Score = 199 bits (507), Expect = 2e-55
Identities = 69/363 (19%), Positives = 134/363 (36%), Gaps = 16/363 (4%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
E L N + + + F + L LDL + ++ + F++ L L L N
Sbjct: 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
LI + + L+ L IS + + + L++ Y SN
Sbjct: 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152
Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES--SIAELPSDLFWNSTNITNIVL 303
+ L+V+ + + L ++L + L + IA + F ++ +
Sbjct: 153 EKLKVLDFQNNA--IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210
Query: 304 TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY--TLNLKNNQLENIT 361
L + L + + + +FE L E+ ++NL+ + NI+
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270
Query: 362 --SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV 419
+ SGL LDL+ L ++ GLS+L + LS N
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFE----NLCQISASNFP 325
Query: 420 NLETINLSYNRIS-SLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS-NKLT-LDLSF 476
+L +++ N L + ++ +L+ELDL H++ + + + L L+LS+
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
Query: 477 NQI 479
N+
Sbjct: 386 NEP 388
Score = 108 bits (273), Expect = 7e-25
Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 15/197 (7%)
Query: 71 KLNITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKD- 120
+ + L N L F ++ + L+ + +
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQS 419
Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN---DVAYMDPEIFKNLTSLR 177
F+ L+ LNL + + +F +P LQ L+L N + L L
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479
Query: 178 ILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMF 237
IL L L ++ + F ++ + +D+S N ++ S L+ + SN +
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538
Query: 238 PKDLFAEMKYLQVIKIS 254
L + + I +
Sbjct: 539 LPSLLPILSQQRTINLR 555
Score = 99.3 bits (248), Expect = 6e-22
Identities = 58/345 (16%), Positives = 106/345 (30%), Gaps = 57/345 (16%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQIN 383
+ L +P L S + L N L I T+ L L LDL+ Q+ I+
Sbjct: 17 YNCENLGLNEIPGTLPNSTE---CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73
Query: 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
F L+T+ L+ N L F + L L+ + ISS+ + +
Sbjct: 74 EDTFQSQHRLDTLVLTANPLIFMAE----TALSGPKALKHLFFIQTGISSIDFIPLHNQK 129
Query: 444 SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMV 503
+L+ L L N+ S I LD N I + + S++
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM------------SSLQ 177
Query: 504 ARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVR 563
+ + LN N I + + + N N V
Sbjct: 178 QATNLSLNLNGNDI--------------AGIEPGAFDSAVFQSLNFGGTQNLLVIFKG-- 221
Query: 564 PENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQ-LILH 622
S S+ + P +E S++ + L
Sbjct: 222 ----------------LKNSTIQSLWLGTFEDMDDEDIS---PAVFEGLCEMSVESINLQ 262
Query: 623 NNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELID 667
+ + + + + +LDL+ ++S + + L+ L+ +
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLV 307
Score = 40.4 bits (95), Expect = 0.002
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 13/85 (15%)
Query: 571 TKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQ-LILHNNSINHF 629
T +C + NC + L +P LP S + L N +
Sbjct: 1 TTSSDQKCIEK----EVNKTYNCENLGLNEIPGTLP--------NSTECLEFSFNVLPTI 48
Query: 630 LESPPESYKLITDLDLSYNNISHVD 654
+ +T LDL+ I +
Sbjct: 49 QNTTFSRLINLTFLDLTRCQIYWIH 73
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 213 bits (545), Expect = 4e-62
Identities = 82/349 (23%), Positives = 135/349 (38%), Gaps = 36/349 (10%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
H K + + I + L+L N I L F P L+ L+L N V+ ++P
Sbjct: 19 HRKRFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
F NL +LR L L N+L + +F + NL LDIS N I IL +F DL L++
Sbjct: 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS 289
N F+ + L+ + + L +P+ ++L L + L +I +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHLNINAIRD 193
Query: 290 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
F + + ++ L ++ L L + L +P L L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 350 LNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
LNL N + I + L L L + L QL + AF GL+
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN---------------- 296
Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
L +N+S N++++L + S+ +L+ L L N +
Sbjct: 297 ------------YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 207 bits (529), Expect = 8e-60
Identities = 65/321 (20%), Positives = 123/321 (38%), Gaps = 30/321 (9%)
Query: 88 NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQ 147
+ L+ F ++ + L+ N ++ + F L +L LR N + + GVF
Sbjct: 43 RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101
Query: 148 YVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG 207
+ L LD+ N + + +F++L +L+ L + N L+ ++ F+ + +L L +
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161
Query: 208 NNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL 267
N++ +P+ S L L + +
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLN--------------------------INAIRDYS 195
Query: 268 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 327
F L L + + + + N+T++ + H LT++P R L L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI-THCNLTAVPYLAVRHLVYLRFLN 254
Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLI 385
L N + + ++ L L + L QL + GL+ L L++S NQL +
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314
Query: 386 AFDGLSSLNTVDLSHNLLTFD 406
F + +L T+ L N L D
Sbjct: 315 VFHSVGNLETLILDSNPLACD 335
Score = 130 bits (330), Expect = 1e-32
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 10/207 (4%)
Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
V+ +P + T + L ++ + +L F L +LEL N +
Sbjct: 14 RAVLCHRKRFVAVPEGIP---TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVS 69
Query: 335 YLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
+ F +L L TL L++N+L+ I GLS L LD+S N++ + F L +
Sbjct: 70 AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129
Query: 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452
L ++++ N L + ++ +LE + L ++S+ + +S + L L LRH
Sbjct: 130 LKSLEVGDNDLVYISHR----AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
Query: 453 NNFSFIPDQLDSIVSNKLTLDLSFNQI 479
N + I D + L++S
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPY 212
Score = 119 bits (300), Expect = 8e-29
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 9/192 (4%)
Query: 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 358
VL K+ ++P + + L+L +N++K L ++ F S L L L N +
Sbjct: 13 DRAVLCHRKRFVAVPEGIPTE---TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69
Query: 359 NITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK 416
+ L L +L L N+L+ I L F GLS+L +D+S N + +
Sbjct: 70 AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV----ILLDYMFQ 125
Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSF 476
NL+++ + N + + S + SL++L L N + IP + S + + L L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
Query: 477 NQIAIVDLRTLE 488
I + + +
Sbjct: 186 LNINAIRDYSFK 197
Score = 49.7 bits (119), Expect = 2e-06
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CP RC C+ +V C +P+ +P L L N I +
Sbjct: 3 CPPRCECSAQDR----AVLCHRKRFVAVPEGIPTETR-------LLDLGKNRIKTLNQDE 51
Query: 634 PESYKLITDLDLSYNNISHVD 654
S+ + +L+L+ N +S V+
Sbjct: 52 FASFPHLEELELNENIVSAVE 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 213 bits (543), Expect = 4e-59
Identities = 98/453 (21%), Positives = 172/453 (37%), Gaps = 41/453 (9%)
Query: 73 NITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLN 132
+ T L S + + ++ F L ++ + L + K+ F+ P L L+
Sbjct: 22 VLNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79
Query: 133 LRGNSITELYSGVFQYVPKLQVLDLGSN--DVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
L + I L+ FQ + L L L A + F+NL +L L+L NQ+ +L
Sbjct: 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139
Query: 191 -RAIFNNVPNLRSLDISGNNISILPSGVFSDLR--KLQTFYANSNRFQMFPKDLFAEM-- 245
F + +L+S+D S N I ++ L+ L F +N + +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199
Query: 246 ----KYLQVIKISYHK----------DSLKELPSGLFANLPLLNTVILGESSIAELPSDL 291
L+++ +S + +++ + + + G +I + +
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259
Query: 292 FWN--STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
F +++ ++ L+ H + SL S +F K L L L NK+ + + F L L
Sbjct: 260 FAGLARSSVRHLDLS-HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 350 LNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
LNL N L + ++ GL + +DL N + I F L L T+DL N LT
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378
Query: 408 YQYGYSPLKQCVN-----------LETINLSYNRISSLFDDWI-SSMTSLKELDLRHNNF 455
+ + N I+LS NR+ +L + + L+ L L N F
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438
Query: 456 SFIPDQLDSIVSNKLT-LDLSFNQIAIVDLRTL 487
S + L L L N + + L
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Score = 211 bits (538), Expect = 2e-58
Identities = 115/609 (18%), Positives = 219/609 (35%), Gaps = 65/609 (10%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSIT-ELYSGVFQYVPKLQVL 155
L+ + +LLS N I + F QL+ L L + F+ +P L++L
Sbjct: 20 PQVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78
Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQL--INLTRAIFNNVPNLRSLDISGNNI-SI 212
DLGS+ + ++ P+ F+ L L L L L L F N+ L LD+S N I S+
Sbjct: 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
F L L++ +SN+ + + ++ + S +SL S +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 273 ------LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 326
+L + + + + F N+ ++ + ++
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNA-------------ISKSQAFSLILAHHIMGA 245
Query: 327 ELQRNKLKYLPENLFESLKELY--TLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQI 382
+ +K +N F L L+L + + ++ S V L L L+L++N++ +I
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305
Query: 383 NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSM 442
AF GL +L ++LS+NLL + S + I+L N I+ + D +
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLG----ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361
Query: 443 TSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTM 502
L+ LDLR N + I + + + LS N++ + L
Sbjct: 362 EKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINL--------------- 401
Query: 503 VARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSV 562
+AN++ L++N + Y L+R ++ + + N + +
Sbjct: 402 ---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN--PSLEQL 456
Query: 563 RPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQ-LIL 621
C+ F + + + L +P + T+++ L L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV-----FSHLTALRGLSL 511
Query: 622 HNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICHGSTKPLN 681
++N + S + + LD+S N + + + I K IC
Sbjct: 512 NSNRLTVL--SHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFI 569
Query: 682 GILLKNIQN 690
L
Sbjct: 570 NWLNHTNVT 578
Score = 196 bits (501), Expect = 2e-53
Identities = 99/517 (19%), Positives = 187/517 (36%), Gaps = 61/517 (11%)
Query: 94 PPYFDGLHFVKHILLSHNKEITGLHKDIFKG--TPQLESLNLRGNSITELYSGVFQYVPK 151
P F L+ +K I S N+ I + + + L +L NS+ S +
Sbjct: 141 HPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199
Query: 152 ------LQVLDLGSNDVAYMDPEIFKN------------LTSLRILNLDHNQLINLTRAI 193
L++LD+ N F N + + + + +
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259
Query: 194 FNNVP--NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
F + ++R LD+S + L S VF L+ L+ N+ + F + LQV+
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 252 KISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS 311
+SY+ L EL S F LP + + L ++ IA + F + + L LT+
Sbjct: 320 NLSYNL--LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR-DNALTT 376
Query: 312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS---LVGLSG 368
+ + + L NKL LP+ ++L N+LEN+ L+ +
Sbjct: 377 IH-----FIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPH 427
Query: 369 LNSLDLSWNQLEQINLIA-FDGLSSLNTVDLSHNLLTFDEYQY-GYSPLKQCVNLETINL 426
L L L+ N+ + SL + L N+L + + +L+ + L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487
Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRT 486
++N ++SL S +T+L+ L L N + + + + +N LD+S NQ+ +
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH--NDLPANLEILDISRNQLLAPNPDV 545
Query: 487 LEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVT 546
S +++ + N C C I +++ ++
Sbjct: 546 FV-----------------SLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYC 588
Query: 547 DNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFS 583
+ F +GV + S+ E + +
Sbjct: 589 VYPDSF--SGVSLFSLSTEGCDEEEVLKSLKFSLFIV 623
Score = 174 bits (443), Expect = 6e-46
Identities = 90/422 (21%), Positives = 149/422 (35%), Gaps = 57/422 (13%)
Query: 46 NLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKH 105
+L +V + C P N + ++ N + + H +
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244
Query: 106 ILLSHNKEITGLHKDIFKG--TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
+ I ++ F G + L+L + L S VF+ + L+VL+L N +
Sbjct: 245 AGFGFHN-IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303
Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
+ E F L +L++LNL +N L L + F +P + +D+ N+I+I+ F L K
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363
Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
LQT N +P + + L +
Sbjct: 364 LQTLDLRDNALTTIH-------------------------------FIPSIPDIFLSGNK 392
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF-RDCKKLVKLELQRNKLKYLPEN-LF 341
+ LP N++ +L +L F L L L +N+ +
Sbjct: 393 LVTLPKINLTA-----NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447
Query: 342 ESLKELYTLNLKNNQLENIT-------SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN 394
L L L N L+ GLS L L L+ N L + F L++L
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Query: 395 TVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
+ L+ N LT S NLE +++S N++ + D SL LD+ HN
Sbjct: 508 GLSLNSNRLTV------LSHNDLPANLEILDISRNQLLAPNPDV---FVSLSVLDITHNK 558
Query: 455 FS 456
F
Sbjct: 559 FI 560
Score = 111 bits (278), Expect = 3e-25
Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 25/247 (10%)
Query: 265 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 324
+ + L ++L + I + + F + + L ++ FR+ L
Sbjct: 17 TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76
Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT----SLVGLSGLNSLDLSWNQLE 380
L+L +K+ +L + F+ L L+ L L L + L L LDLS NQ+
Sbjct: 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136
Query: 381 QINL-IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI 439
+ L +F L+SL ++D S N + PL+ L +L+ N + S
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGK-TLSFFSLAANSLYSRVSVDW 194
Query: 440 SSM------TSLKELDLRHNNFSFIPDQLDS------------IVSNKLTLDLSFNQIAI 481
L+ LD+ N ++ S + + + F+ I
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254
Query: 482 VDLRTLE 488
D T
Sbjct: 255 PDQNTFA 261
Score = 102 bits (256), Expect = 1e-22
Identities = 65/368 (17%), Positives = 124/368 (33%), Gaps = 66/368 (17%)
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI---TS 362
LT +P L +L L N ++ + + F L++L L L + +
Sbjct: 13 FCNLTQVPQVL----NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68
Query: 363 LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE 422
L L LDL +++ ++ AF GL L + L L+ + G + L
Sbjct: 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG--YFRNLKALT 126
Query: 423 TINLSYNRISSLFDDW-ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAI 481
++LS N+I SL+ + SLK +D N + + +
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-------------ELEPLQG 173
Query: 482 VDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQM 541
L + +AN + + C N
Sbjct: 174 KTLSFFSL----------------AANSLYSRVSVDWGKCMN----------------PF 201
Query: 542 LELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHM 601
+V + L+ GN G N + A + + IM ++
Sbjct: 202 RNMVLEILDVSGN---GWTVDITGNFSNAISKSQAF---SLILAHHIMGAGFGFHNIKDP 255
Query: 602 PDYLPVTYEDKKATSIQ-LILHNNSINHFLESPPESYKLITDLDLSYNNISHV-DTMYPY 659
T+ +S++ L L + + E+ K + L+L+YN I+ + D +
Sbjct: 256 DQN---TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312
Query: 660 LNHLELID 667
L++L++++
Sbjct: 313 LDNLQVLN 320
Score = 35.9 bits (83), Expect = 0.056
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 10/79 (12%)
Query: 591 VNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNI 650
+LT +P L T +L+L N I S + + L+L
Sbjct: 9 AFYRFCNLTQVPQVLNTT--------ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60
Query: 651 SHV--DTMYPYLNHLELID 667
+ L +L ++D
Sbjct: 61 PLTIDKEAFRNLPNLRILD 79
Score = 29.4 bits (66), Expect = 5.1
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 444 SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD 483
+ R N + +P L++ L LSFN I V
Sbjct: 5 DGRIAFYRFCNLTQVPQVLNTT----ERLLLSFNYIRTVT 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 196 bits (501), Expect = 1e-56
Identities = 89/397 (22%), Positives = 150/397 (37%), Gaps = 72/397 (18%)
Query: 91 VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVP 150
V L+ K + ++ + L + Q+E LNL I E+ + F Y
Sbjct: 35 VYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH 93
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
+Q L +G N + Y+ P +F+N+ L +L L+ N L +L R IF+N P L +L +S NN+
Sbjct: 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
+ F LQ +SNR L + L +
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNR--------------------------LTHVDLSLIPS 187
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
L N + +N L++L + + +L+
Sbjct: 188 LFHAN---------------VSYN-------------LLSTLAIPIA-----VEELDASH 214
Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390
N + + + L L L++N L + L+ GL +DLS+N+LE+I F +
Sbjct: 215 NSINVVRGPVNVELT---ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271
Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450
L + +S+N L + L+ ++LS+N + + + L+ L L
Sbjct: 272 QRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYL 325
Query: 451 RHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL 487
HN+ + S L LS N LR L
Sbjct: 326 DHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL 359
Score = 171 bits (436), Expect = 2e-47
Identities = 64/317 (20%), Positives = 127/317 (40%), Gaps = 19/317 (5%)
Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
+ +++D + N + + + + LP+ + R+++
Sbjct: 14 DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73
Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286
N + + FA +Q + + ++ ++ LP +F N+PLL ++L + ++
Sbjct: 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346
LP +F N+ +T + + + L + F+ L L+L N+L ++ +L SL
Sbjct: 132 LPRGIFHNTPKLTTLSM-SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190
Query: 347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
N+ N +++L + LD S N + + L+ L L HN LT
Sbjct: 191 A---NVSYNL---LSTLAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLT-- 239
Query: 407 EYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIV 466
+ L L ++LSYN + + M L+ L + +N + I
Sbjct: 240 ----DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP 295
Query: 467 SNKLTLDLSFNQIAIVD 483
+ K LDLS N + V+
Sbjct: 296 TLK-VLDLSHNHLLHVE 311
Score = 94.7 bits (236), Expect = 6e-21
Identities = 34/189 (17%), Positives = 72/189 (38%), Gaps = 17/189 (8%)
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY-----TLNLKNNQLENI 360
+ + S L DC + ++++ +++ + KN+ + +
Sbjct: 7 QPEYKCIDSNLQYDC------VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60
Query: 361 TS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQC 418
+ L + L+L+ Q+E+I+ AF ++ + + N + + +
Sbjct: 61 PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP----PHVFQNV 116
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQ 478
L + L N +SSL + L L + +NN I D ++ L LS N+
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176
Query: 479 IAIVDLRTL 487
+ VDL +
Sbjct: 177 LTHVDLSLI 185
Score = 35.0 bits (81), Expect = 0.075
Identities = 11/76 (14%), Positives = 26/76 (34%)
Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472
S L+ +++ F ++ + K + +++ +P L L
Sbjct: 15 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74
Query: 473 DLSFNQIAIVDLRTLE 488
+L+ QI +D
Sbjct: 75 NLNDLQIEEIDTYAFA 90
Score = 29.6 bits (67), Expect = 4.1
Identities = 10/77 (12%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 593 CSSASLTHMPDYLPVTYEDKKATSIQ-LILHNNSINHFLESPPESYKLITDLDLSYNNIS 651
+ + +ED + + + N+++ + +S++ + L+L+ I
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82
Query: 652 HVDT-MYPYLNHLELID 667
+DT + Y + ++ +
Sbjct: 83 EIDTYAFAYAHTIQKLY 99
Score = 28.5 bits (64), Expect = 9.3
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 618 QLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELID 667
+L + NN + L + + LDLS+N++ HV+ P + LE +
Sbjct: 276 RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 196 bits (499), Expect = 2e-54
Identities = 84/431 (19%), Positives = 154/431 (35%), Gaps = 37/431 (8%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
+ + + +FSN + + + GLH + +++L+ N I F
Sbjct: 43 PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFS 101
Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLD 182
G LE+L + L S + L+ L++ N + P F NLT+L ++L
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161
Query: 183 HNQLINLTRAIFNNVPNLR----SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ-MF 237
+N + +T + SLD+S N I + F + KL N
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNI 220
Query: 238 PKDLFAEMKYLQVIKISYHK----DSLKELPSGLFANLPLLNTVILGES--SIAELPSDL 291
K + L V ++ + +L+ + L + + +
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
F N++ + L + L K L + R +LK P L L +L
Sbjct: 281 FHCLANVSAMSLA-GVSIKYLEDVPK--HFKWQSLSIIRCQLKQFP---TLDLPFLKSLT 334
Query: 352 LKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFD--GLSSLNTVDLSHNLLTFDEYQ 409
L N+ V L L+ LDLS N L ++ G +SL +DLS N
Sbjct: 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-- 392
Query: 410 YGYSPLKQCVNLETINLSYNRISSLFD-DWISSMTSLKELDLRHNNFSFIPDQLDSIVSN 468
+ L+ ++ ++ + + + S+ L LD+ + N D + +++
Sbjct: 393 ---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 469 KLTLDLSFNQI 479
TL ++ N
Sbjct: 450 LNTLKMAGNSF 460
Score = 186 bits (473), Expect = 7e-51
Identities = 67/397 (16%), Positives = 143/397 (36%), Gaps = 35/397 (8%)
Query: 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
K ++ + DI ++++L N + L S F +LQ LDL ++
Sbjct: 14 ITYQCMDQK-LSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69
Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
++ + + L L L L N + + + F+ + +L +L ++ L S L
Sbjct: 70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129
Query: 224 LQTFYANSNRFQMFPK-DLFAEMKYLQVIKISYHKDSLKELPSGLFANL----PLLNTVI 278
L+ N F+ + L + +SY + ++ + L + ++
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY--NYIQTITVNDLQFLRENPQVNLSLD 187
Query: 279 LGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN------K 332
+ + I + F + + L G+ +++ T ++ L L
Sbjct: 188 MSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246
Query: 333 LKYLPENLFESLKELYTLNLKNNQLE----NITSLVGLSGLNSLDLSWNQLEQINLIAFD 388
L+ ++ E L ++ + +I L+ ++++ L+ ++ + +
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK- 305
Query: 389 GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKEL 448
++ + L P L+++ L+ N+ S F ++ SL L
Sbjct: 306 -HFKWQSLSIIRCQLK-------QFPTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYL 355
Query: 449 DLRHNNFSFIPDQLDSIVSNK--LTLDLSFNQIAIVD 483
DL N SF S + LDLSFN I+
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392
Score = 180 bits (459), Expect = 5e-49
Identities = 91/514 (17%), Positives = 164/514 (31%), Gaps = 66/514 (12%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
I TI A+ + SP F GL +++++ K + L
Sbjct: 67 EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIG 125
Query: 124 GTPQLESLNLRGNSITEL-YSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI---- 178
L+ LN+ N I F + L +DL N + + + L
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQT------FYANS 231
L++ N + + F L L + GN S + +L L + +
Sbjct: 186 LDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244
Query: 232 NRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL 291
++F + + + + + + F L ++ + L SI L
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304
Query: 292 FWNS--------TNITNIVLTGHKKLTSL--------PSTLFRDCKKLVKLELQRNKLKY 335
+ L SL S L L+L RN L +
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 364
Query: 336 LPENLFESLK--ELYTLNLKNNQLENITS-LVGLSGLNSLDLSWNQLEQI-NLIAFDGLS 391
+ L L L+L N +++ +GL L LD + L+++ AF L
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS-LFDDWISSMTSLKELDL 450
L +D+S+ D +L T+ ++ N + ++ T+L LDL
Sbjct: 425 KLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480
Query: 451 RHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD---------LRTL-----EIKAAAQDP 496
I + + L++S N + +D L TL I+
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET----S 536
Query: 497 NEDSTMVARSANIVILNDNPIACNCSNYDLIRFV 530
+S L +N +AC C + +++V
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570
Score = 164 bits (416), Expect = 4e-43
Identities = 69/350 (19%), Positives = 138/350 (39%), Gaps = 17/350 (4%)
Query: 61 PDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNK-EITGLHK 119
+ + + L++ + F + N+ + P +GL V
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDER-NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278
Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
F + +++L G SI L + K Q L + + +L L+ L
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQLKQFP---TLDLPFLKSL 333
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDL--RKLQTFYANSNRFQMF 237
L N+ + +P+L LD+S N +S +SDL L+ + N +
Sbjct: 334 TLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391
Query: 238 PKDLFAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPSDLFWNST 296
+ F ++ LQ + + LK + F +L L + + ++ +F T
Sbjct: 392 SAN-FMGLEELQHLDFQHST--LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448
Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
++ + + G+ + S +F + L L+L + +L+ + +F++L L LN+ +N
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508
Query: 357 LENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
L + L L++LD S+N++E I SL +L++N +
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
Score = 139 bits (352), Expect = 8e-35
Identities = 69/395 (17%), Positives = 134/395 (33%), Gaps = 22/395 (5%)
Query: 16 NSLEIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNIT 75
NS I + + + + E+NL F + L + N
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL-TYTNDF 274
Query: 76 TINTLAFSNSP-------SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQL 128
+ + + F + V + + + + + L + P L
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ----LKQFPTLDLPFL 330
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL--TSLRILNLDHNQL 186
+SL L N + + +P L LDL N +++ + +L SLR L+L N
Sbjct: 331 KSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388
Query: 187 INLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
I ++ F + L+ LD + + + F L KL + ++ +F +
Sbjct: 389 IIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447
Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
L +K++ + S +FAN L + L + + ++ +F + + +
Sbjct: 448 TSLNTLKMAGNSFK-DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM-S 505
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
H L L S+ + L L+ N+++ L K L NL NN + I
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 565
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSH 400
L + L + + +NT +
Sbjct: 566 F--LQWVKEQKQFLVNVEQMTCATPVEMNTSLVLD 598
Score = 111 bits (279), Expect = 1e-25
Identities = 60/383 (15%), Positives = 124/383 (32%), Gaps = 61/383 (15%)
Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
T + ++++P D+ ++ NI L+ L L S F + +L L+L R +++
Sbjct: 14 ITYQCMDQKLSKVPDDIP---SSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEIE 69
Query: 335 YLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
+ + + L L L L N +++ S GL+ L +L +L + L +
Sbjct: 70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129
Query: 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK----EL 448
L ++++HN + + + NL ++LSYN I ++ + + + L
Sbjct: 130 LKKLNVAHNFIHSCKLP---AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186
Query: 449 DLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSAN 508
D+ N FI DQ + L L N + + + +
Sbjct: 187 DMSLNPIDFIQDQAFQGIKLH-ELTLRGNFNS-------------SNIMKTCLQNLAGLH 232
Query: 509 IVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLT 568
+ L + + + + L N S
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN----------DFSDDIVK-- 280
Query: 569 CDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINH 628
F ++ +++ + S+ ++ D L + +
Sbjct: 281 -------------FHCLANVSAMSLAGVSIKYLEDVPKHF------KWQSLSIIRCQLKQ 321
Query: 629 FLESPPESYKLITDLDLSYNNIS 651
F P + L L+ N S
Sbjct: 322 F---PTLDLPFLKSLTLTMNKGS 341
Score = 39.2 bits (92), Expect = 0.004
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 15/83 (18%)
Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQ-LILHNNSINHFLE 631
P ++ C L+ +PD +P +S + + L N +
Sbjct: 4 LNPCIEVVP------NITYQCMDQKLSKVPDDIP--------SSTKNIDLSFNPLKILKS 49
Query: 632 SPPESYKLITDLDLSYNNISHVD 654
++ + LDLS I ++
Sbjct: 50 YSFSNFSELQWLDLSRCEIETIE 72
Score = 36.5 bits (85), Expect = 0.030
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472
+P + V T ++S + DD +S K +DL N + S S L
Sbjct: 5 NPCIEVVPNITYQCMDQKLSKVPDD---IPSSTKNIDLSFNPLKILKSYSFSNFSELQWL 61
Query: 473 DLSFNQIAIVD 483
DLS +I ++
Sbjct: 62 DLSRCEIETIE 72
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 191 bits (488), Expect = 3e-54
Identities = 80/397 (20%), Positives = 153/397 (38%), Gaps = 45/397 (11%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSI-TELYSGVFQYVPKLQVLDLGSND 161
V ++ LS N I L++ F L+ L + + + + F+ + L +L L N
Sbjct: 32 VNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 162 VAYMDPEIFKNLTSLRILNLDHNQL--INLTRAIFNNVPNLRSLDISGNNI-SILPSGVF 218
++ F L +L +L L L L+ F + +L L + NNI I P+ F
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 219 SDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP--------SGLFAN 270
++R+ N+ + ++ + + +L+++ G
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
+ T+ L + E + F+++ T I +L +
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKI------------QSLILSNSYNMGSSFGH 258
Query: 331 NKLKYLPENLFESLK--ELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIA 386
K F+ L+ + T +L +++ + + + L L L+ N++ +I+ A
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318
Query: 387 FDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS 440
F GL+ L ++LS N L F+ LE ++LSYN I +L D
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFE----------NLDKLEVLDLSYNHIRALGDQSFL 368
Query: 441 SMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN 477
+ +LKEL L N +PD + +++ + L N
Sbjct: 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 189 bits (481), Expect = 4e-53
Identities = 79/374 (21%), Positives = 139/374 (37%), Gaps = 49/374 (13%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
L+ F L ++ + + + + F+G L L L N +L +G F +
Sbjct: 45 LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104
Query: 152 LQVLDLGSN--DVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGN 208
L+VL L D A + FK LTSL +L L N + + + F N+ LD++ N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 209 NISILPSGVFSDLRKL----------QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD 258
+ + + + N + + + +S +
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG- 223
Query: 259 SLKELPSGLFANLPLLNTVI-------------LGESSIAELPSDLFWN--STNITNIVL 303
KE + F + + G ++ + + F ++ + L
Sbjct: 224 -FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282
Query: 304 TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL 363
+ K+ +L ++F L +L L +N++ + +N F L L LNL N L +I S
Sbjct: 283 S-KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341
Query: 364 V--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPL 415
+ L L LDLS+N + + +F GL +L + L N L FD L
Sbjct: 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD-------RL 394
Query: 416 KQCVNLETINLSYN 429
+L+ I L N
Sbjct: 395 T---SLQKIWLHTN 405
Score = 127 bits (322), Expect = 9e-32
Identities = 54/317 (17%), Positives = 110/317 (34%), Gaps = 32/317 (10%)
Query: 67 SLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKD-IFKGT 125
F+ L + L + + VLS +F L ++ ++L N I + F
Sbjct: 97 GAFNGL--ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNM 153
Query: 126 PQLESLNLRGNSITELYSGVFQYVPK--LQVLDLGSNDVAYMDP--------EIFKNLTS 175
+ L+L N + + +L L S + M+ TS
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213
Query: 176 LRILNLDHNQLINLTRAIFNNVPNLRSL-------------DISGNNISILPSGVFSDLR 222
+ L+L N F + + N + F L
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 223 --KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG 280
++T + ++ K +F+ L+ + ++ ++ + ++ F L L + L
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE--INKIDDNAFWGLTHLLKLNLS 331
Query: 281 ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL 340
++ + + S +F N + + L + + +L F L +L L N+LK +P+ +
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDL-SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390
Query: 341 FESLKELYTLNLKNNQL 357
F+ L L + L N
Sbjct: 391 FDRLTSLQKIWLHTNPW 407
Score = 112 bits (281), Expect = 2e-26
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 8/183 (4%)
Query: 60 LPDENFISLFSKLNITTINTLAFSN-----SPSNVGVLSPPYFDGLHF--VKHILLSHNK 112
+ F + I ++ N +N F GL VK LS +K
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
I L K +F LE L L N I ++ F + L L+L N + +D +F+N
Sbjct: 287 -IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345
Query: 173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
L L +L+L +N + L F +PNL+ L + N + +P G+F L LQ + ++N
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Query: 233 RFQ 235
+
Sbjct: 406 PWD 408
Score = 104 bits (260), Expect = 1e-23
Identities = 66/365 (18%), Positives = 120/365 (32%), Gaps = 40/365 (10%)
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
+ I + ++ L +P L + ++L N + L E F L++L L ++
Sbjct: 9 SVIGYNAICINRGLHQVPE-LPAH---VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ 64
Query: 356 QLENITS---LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
+ GLS L L L +NQ Q+ AF+GL++L + L+ L +
Sbjct: 65 TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124
Query: 413 SPLKQCVNLETINLSYNRISSLFDDWI-SSMTSLKELDLRHNNFSFIP-DQLDSIVSNKL 470
K +LE + L N I + +M LDL N I + L +
Sbjct: 125 --FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182
Query: 471 T-LDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRF 529
T L LS + ++ L + S + L+ N + +
Sbjct: 183 TLLRLSSITLQDMNEYWL------GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF--- 233
Query: 530 VSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIM 589
++ + L N G P +
Sbjct: 234 -------DAIAGTKIQSLILSNSYNMGSS--------FGHTNFKDPDNFTFKGLEASGVK 278
Query: 590 SVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNN 649
+ + S + + + + + D + QL L N IN ++ + L+LS N
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLE----QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 650 ISHVD 654
+ +D
Sbjct: 335 LGSID 339
Score = 101 bits (254), Expect = 4e-23
Identities = 55/276 (19%), Positives = 99/276 (35%), Gaps = 24/276 (8%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
L ++P L A++ ++ L +SIAEL F ++ + + + + FR
Sbjct: 21 GLHQVPE-LPAHVNYVD---LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT----SLVGLSGLNSLDL 374
L+ L+L N+ L F L L L L L+ L+ L L L
Sbjct: 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 375 SWNQLEQINL-IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
N +++I F + + +DL+ N + + + + + + LS +
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK--HFTLLRLSSITLQD 194
Query: 434 LFDDWISS--------MTSLKELDLRHNNFSFIPDQ--LDSIVSNKL-TLDLSFNQIAIV 482
+ + W+ TS+ LDL N F + D+I K+ +L LS +
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254
Query: 483 DLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIA 518
K D + A L+ + I
Sbjct: 255 SFGHTNFKDP--DNFTFKGLEASGVKTCDLSKSKIF 288
Score = 42.0 bits (99), Expect = 5e-04
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 14/79 (17%)
Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLES 632
P + C + C + L +P+ LP + L NSI E+
Sbjct: 3 PGTSECSVIGY------NAICINRGLHQVPE-LPAHVN-------YVDLSLNSIAELNET 48
Query: 633 PPESYKLITDLDLSYNNIS 651
+ + L +
Sbjct: 49 SFSRLQDLQFLKVEQQTPG 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 194 bits (495), Expect = 4e-54
Identities = 81/412 (19%), Positives = 150/412 (36%), Gaps = 27/412 (6%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
L F ++ + LS + I + ++ L +L L GN I L G F +
Sbjct: 43 LGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNI 210
LQ L ++A ++ +L +L+ LN+ HN + + F+N+ NL LD+S N I
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 211 SILPSGVFSDLRKLQTFYA----NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG 266
+ L ++ + N F E++ L + + + DSL +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSL-NVMKT 219
Query: 267 LFANLP------LLNTVILGESSIAELPSDLFWNSTNIT--NIVLTGHKKLTSLPSTLFR 318
L L+ E ++ + N+T L LF
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279
Query: 319 DCKKLVKLELQRNKLKYLPENLFE-SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWN 377
+ L ++ + + + + L +N K Q + L L L + N
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSN 335
Query: 378 QLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD 437
+ N + L SL +DLS N L+F +L+ ++LS+N + ++ +
Sbjct: 336 KG--GNAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 438 WISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT-LDLSFNQIAIVDLRTLE 488
+ L+ LD +H+N + + + L LD+S +
Sbjct: 392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Score = 177 bits (450), Expect = 5e-48
Identities = 91/501 (18%), Positives = 163/501 (32%), Gaps = 67/501 (13%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
I TI A+ + + L+ F GL ++ ++ + L
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIG 121
Query: 124 GTPQLESLNLRGNSITELYSG-VFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI---- 178
L+ LN+ N I F + L+ LDL SN + + + L + +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI-LPSGVFSDLRKLQT------FYANS 231
L+L N + + F L L + N S+ + L L+ + N
Sbjct: 182 LDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 232 NRFQMFPKDLFAEMKYLQVIKISYHK-DSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
+ F K + L + + D + LF L +++ L +I +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
Query: 291 LFWNS-----------TNITNIVLTG-------HKKLTSLPSTLFRDCKKLVKLELQRNK 332
+ + L K + S D L L+L RN
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNG 358
Query: 333 L--KYLPENLFESLKELYTLNLKNNQLENITS-LVGLSGLNSLDLSWNQLEQI-NLIAFD 388
L K L L+L N + ++S +GL L LD + L+Q+ F
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 389 GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI-SSLFDDWISSMTSLKE 447
L +L +D+SH +LE + ++ N + D + + +L
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGI----FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 448 LDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSA 507
LDL + + +S+ L+++ NQ+ V + S
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR--------------LTSL 520
Query: 508 NIVILNDNPIACNCSNYDLIR 528
+ L+ NP C+C D +
Sbjct: 521 QKIWLHTNPWDCSCPRIDYLS 541
Score = 174 bits (443), Expect = 5e-47
Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 53/394 (13%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
++L+L N + L S F P+LQVLDL ++ ++ +++L+ L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK-DLFAE 244
+ +L F+ + +L+ L N++ L + L+ L+ N Q F + F+
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLP----LLNTVILGESSIAELPSDLFWNSTNITN 300
+ L+ + +S +K ++ + L L ++ L + + + F +
Sbjct: 148 LTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHK 204
Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQR------NKLKYLPENLFESLKELYTLN--- 351
+ L + ++ T + L L L+ ++ E L L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Query: 352 ------------------------LKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAF 387
L + +E + G L+L +
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC---KFGQFPT 321
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS--SLFDDWISSMTSL 445
L SL + + N +LE ++LS N +S TSL
Sbjct: 322 LKLKSLKRLTFTSNKGGNA------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 446 KELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
K LDL N + + LD + +
Sbjct: 376 KYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNL 408
Score = 123 bits (311), Expect = 8e-30
Identities = 75/490 (15%), Positives = 167/490 (34%), Gaps = 66/490 (13%)
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
N + N + ++LD+S N + L S F +LQ + Q + + +
Sbjct: 18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 307
L + ++ + ++ L G F+ L L ++ E+++A L + + + + + H
Sbjct: 78 LSTLILTGNP--IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV-AHN 134
Query: 308 KLTSLP-STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
+ S F + L L+L NK++ + L ++ LNL
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-------------- 180
Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQ---YGYSPLKQCVNLET 423
SLDLS N + I AF + L+ + L +N + + + G + L+ +
Sbjct: 181 ----SLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Query: 424 INLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL---DLSFNQIA 480
+ + + + +L + R + D + + + + L I
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI- 294
Query: 481 IVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQ 540
+K + + + L + + K K +
Sbjct: 295 ------ERVKDFSYNFGWQH---------LELVNCKFGQ-------FPTLKLKSLKRLT- 331
Query: 541 MLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTH 600
T N + V + S+ +L+ + C + S+ ++ S +
Sbjct: 332 ----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
Query: 601 MPDYLPVTYEDKKATSIQ-LILHNNSINHFLE-SPPESYKLITDLDLSYNNISHVDT-MY 657
M ++ L ++++ E S S + + LD+S+ + ++
Sbjct: 388 MSSNFL------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 658 PYLNHLELID 667
L+ LE++
Sbjct: 442 NGLSSLEVLK 451
Score = 116 bits (293), Expect = 2e-27
Identities = 77/405 (19%), Positives = 153/405 (37%), Gaps = 24/405 (5%)
Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
T E + ++P +L + N+ L+ L L S F +L L+L R +++
Sbjct: 10 ITYQCMELNFYKIPDNLP---FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 335 YLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
+ + ++SL L TL L N ++++ + GLS L L L + L +
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK----EL 448
L ++++HNL+ + NLE ++LS N+I S++ + + + L
Sbjct: 126 LKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 449 DLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSAN 508
DL N +FI + L L N ++ ++T A + + R+
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 509 IVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLEL--VTDNLECFGNAGVGINSVRPEN 566
+ D N + F + + +++L N+ F V I V ++
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KD 299
Query: 567 LTCDTKPCPARCYCNFSPYYSIMSVNCSS-ASLTHMPDYLPVTYEDKKATSIQ-LILHNN 624
+ + + ++ S LT + + + S++ L L N
Sbjct: 300 FSYNFGWQHLELVNC--KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357
Query: 625 SINHFLESPPESYKL--ITDLDLSYNNISHVDTMYPYLNHLELID 667
++ + + LDLS+N + + + + L LE +D
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402
Score = 113 bits (285), Expect = 1e-26
Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 4/218 (1%)
Query: 39 YDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFD 98
+ + FS++++ ++ L S + +
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 99 GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITEL-YSGVFQYVPKLQVLDL 157
G +K++ LS N + + + F G QLE L+ + +++ ++ VF + L LD+
Sbjct: 371 GTTSLKYLDLSFNG-VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 158 GSNDVAYMDPEIFKNLTSLRILNLDHNQL-INLTRAIFNNVPNLRSLDISGNNISILPSG 216
IF L+SL +L + N N IF + NL LD+S + L
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKIS 254
F+ L LQ SN+ + P +F + LQ I +
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526
Score = 108 bits (271), Expect = 9e-25
Identities = 82/488 (16%), Positives = 157/488 (32%), Gaps = 71/488 (14%)
Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
T+ F P +L K L + + L+ L S F + P L + L I
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDL-----SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLK 345
+ + + ++++ ++LT + SL F L KL L L LK
Sbjct: 66 TIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124
Query: 346 ELYTLNLKNNQLENI---TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL----NTVDL 398
L LN+ +N +++ L+ L LDLS N+++ I L + ++DL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS-SLFDDWISSMTSLKELDLRHNNFSF 457
S N + F + + + L + L N S ++ I + L+ L F
Sbjct: 185 SLNPMNFIQ-----PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 458 IPDQLDSIVSNKLT----LDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILN 513
L+ + L L + ++A +D +I S+ S I +
Sbjct: 240 EG-NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 514 DNPIACNCSNYDLIRFVSKKMTKTVYQMLELVT--DNLECFGNAGVGINSVRPENLTCDT 571
D + +L+ + + L+ +T N + V + S+ +L+ +
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358
Query: 572 KPCPARCYCNFSPYYSIMSVNCSSASLTHMPD-------------------YLPVTYEDK 612
C + S+ ++ S + M +
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 613 KATSIQ-LILHNNSI---------------------NHFLESPPESY----KLITDLDLS 646
++ L + + N F E+ + +T LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 647 YNNISHVD 654
+ +
Sbjct: 479 QCQLEQLS 486
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 193 bits (492), Expect = 1e-53
Identities = 91/431 (21%), Positives = 158/431 (36%), Gaps = 82/431 (19%)
Query: 57 FCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITG 116
C + + +F ++I + L+ K + ++ +
Sbjct: 17 KCIDSNLQYDCVFYDVHIDMQTQDVYFGFE----------DITLNNQKIVTFKNST-MRK 65
Query: 117 LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL 176
L + Q+E LNL I E+ + F Y +Q L +G N + Y+ P +F+N+ L
Sbjct: 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125
Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
+L L+ N L +L R IF+N P L +L +S NN+ + F LQ +SNR
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--- 182
Query: 237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 296
L + L +L N + +N
Sbjct: 183 -----------------------LTHVDLSLIPSLFHAN---------------VSYN-- 202
Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
L++L + + +L+ N + + + L L L++N
Sbjct: 203 -----------LLSTLAIPIA-----VEELDASHNSINVVRGPVNVELT---ILKLQHNN 243
Query: 357 LENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK 416
L + L+ GL +DLS+N+LE+I F + L + +S+N L +
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-----LYGQ 298
Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSF 476
L+ ++LS+N + + + L+ L L HN+ + S L LS
Sbjct: 299 PIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSH 354
Query: 477 NQIAIVDLRTL 487
N LR L
Sbjct: 355 NDWDCNSLRAL 365
Score = 186 bits (473), Expect = 5e-51
Identities = 76/422 (18%), Positives = 156/422 (36%), Gaps = 90/422 (21%)
Query: 105 HILLSHNKEITGLHKDIFKGT-----PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGS 159
+ + ++ I +D++ G + + + +++ +L + + ++++L+L
Sbjct: 25 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84
Query: 160 NDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFS 219
+ +D F +++ L + N + L +F NVP L L + N++S LP G+F
Sbjct: 85 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144
Query: 220 DLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
+ KL T ++N + D F LQ +++S ++ L + L +L N
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHAN---- 198
Query: 280 GESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 339
+ +N L++L + + +L+ N + +
Sbjct: 199 -----------VSYN-------------LLSTLAIPIA-----VEELDASHNSINVVRGP 229
Query: 340 LFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLS 399
+ L L L++N L + L+ GL +DLS+N+LE+I F + L + +S
Sbjct: 230 VNVELT---ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286
Query: 400 HNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
+N L + L+ ++LS+N + + + L+ L L HN+ +
Sbjct: 287 NNRLVALN-----LYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK 340
Query: 460 DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIAC 519
L+ L L+ N C
Sbjct: 341 LS------------------THHTLKNLT-----------------------LSHNDWDC 359
Query: 520 NC 521
N
Sbjct: 360 NS 361
Score = 143 bits (362), Expect = 3e-36
Identities = 64/327 (19%), Positives = 124/327 (37%), Gaps = 36/327 (11%)
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFS-----DLRKLQTFYANSNRF 234
+N + +I + V+ L + ++
Sbjct: 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
+ P L + ++++ ++ + ++E+ + FA + + +G ++I LP +F N
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
+T +VL L+SLP +F + KL L + N L+ + ++ F++ L L L +
Sbjct: 122 VPLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Query: 355 NQLE------------------NITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV 396
N+L +++L + LD S N + + L+ L
Sbjct: 181 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL--- 237
Query: 397 DLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
L HN LT + L L ++LSYN + + M L+ L + +N
Sbjct: 238 KLQHNNLT------DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 457 FIPDQLDSIVSNKLTLDLSFNQIAIVD 483
+ I + K LDLS N + V+
Sbjct: 292 ALNLYGQPIPTLK-VLDLSHNHLLHVE 317
Score = 94.2 bits (234), Expect = 3e-20
Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 17/194 (8%)
Query: 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY-----TLNLKNNQ 356
V + + S L DC + ++++ +++ + KN+
Sbjct: 9 VKPRQPEYKCIDSNLQYDC------VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62
Query: 357 LENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP 414
+ + + L + L+L+ Q+E+I+ AF ++ + + N + +
Sbjct: 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP----PHV 118
Query: 415 LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDL 474
+ L + L N +SSL + L L + +NN I D ++ L L
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 475 SFNQIAIVDLRTLE 488
S N++ VDL +
Sbjct: 179 SSNRLTHVDLSLIP 192
Score = 29.5 bits (66), Expect = 4.6
Identities = 10/77 (12%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 593 CSSASLTHMPDYLPVTYEDKKATSIQ-LILHNNSINHFLESPPESYKLITDLDLSYNNIS 651
+ + +ED + + + N+++ + +S++ + L+L+ I
Sbjct: 29 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88
Query: 652 HVDT-MYPYLNHLELID 667
+DT + Y + ++ +
Sbjct: 89 EIDTYAFAYAHTIQKLY 105
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 181 bits (461), Expect = 9e-52
Identities = 67/304 (22%), Positives = 121/304 (39%), Gaps = 25/304 (8%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
+ + + KD+ T L+L+ N ITE+ G F+ + L L L +N ++ + P
Sbjct: 39 SDLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
F L L L L NQL L + L+ L + N I+ + VF+ L ++
Sbjct: 96 FAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 230 NSNRFQ--MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
+N + F MK L I+I+ + +P GL +L L+ L + I ++
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTELH---LDGNKITKV 207
Query: 288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL 347
+ N+ + L ++++ + + L +L L NKL +P L K +
Sbjct: 208 DAASLKGLNNLAKLGL-SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYI 265
Query: 348 YTLNLKNNQLENITS--------LVGLSGLNSLDLSWNQLEQINL--IAFDGLSSLNTVD 397
+ L NN + I S + + + L N ++ + F + V
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325
Query: 398 LSHN 401
L +
Sbjct: 326 LGNY 329
Score = 173 bits (441), Expect = 7e-49
Identities = 60/312 (19%), Positives = 123/312 (39%), Gaps = 21/312 (6%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
L + + ++ + P +LDL +N + + FKNL +L L L +N++
Sbjct: 32 HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
++ F + L L +S N + LP + L++L + N K +F +
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFNGLN 145
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
+ V+++ + + +G F + L+ + + +++I +P L ++T + L
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHL-DG 201
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-LVG 365
K+T + + + L KL L N + + + L L+L NN+L + L
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 366 LSGLNSLDLSWNQLEQINLIAF------DGLSSLNTVDLSHNLLTFDEYQYG-YSPLKQC 418
+ + L N + I F +S + V L N + + E Q + +
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY-- 319
Query: 419 VNLETINLSYNR 430
+ L +
Sbjct: 320 -VRAAVQLGNYK 330
Score = 160 bits (407), Expect = 4e-44
Identities = 70/338 (20%), Positives = 130/338 (38%), Gaps = 53/338 (15%)
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
L+V+ + + ++ + L +L +N++ + F N+ NL +L + N IS
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
+ G F+ L KL+ Y + N+ LKELP + L
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQ--------------------------LKELPEKMPKTL 123
Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS--LPSTLFRDCKKLVKLELQ 329
L + E+ I ++ +F + + L G L S + + F+ KKL + +
Sbjct: 124 QELR---VHENEITKVRKSVFNGLNQMIVVEL-GTNPLKSSGIENGAFQGMKKLSYIRIA 179
Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAF 387
+ +P+ L SL EL+ L N++ + SL GL+ L L LS+N + ++ +
Sbjct: 180 DTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI------SS 441
L + L++N L L ++ + L N IS++ + +
Sbjct: 237 ANTPHLRELHLNNNKLVKVP-----GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291
Query: 442 MTSLKELDLRHNN--FSFIPDQLDSIVSNKLTLDLSFN 477
S + L N + I V + + L
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 145 bits (367), Expect = 1e-38
Identities = 55/296 (18%), Positives = 114/296 (38%), Gaps = 42/296 (14%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
IT I F N + + +SP F L ++ + LS N+ + L + + K
Sbjct: 63 KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPK 121
Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND--VAYMDPEIFKNLTSLRILNL 181
L+ L + N IT++ VF + ++ V++LG+N + ++ F+ + L + +
Sbjct: 122 T---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL 241
+ + + + P+L L + GN I+ + + L L + N
Sbjct: 179 ADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 242 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 301
A +L+ + ++ +K L ++P G A+ + V L ++I+ + S+ F
Sbjct: 236 LANTPHLRELHLNNNK--LVKVPGG-LADHKYIQVVYLHNNNISAIGSNDF--------- 283
Query: 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNN 355
P + L N ++Y + + F + + L N
Sbjct: 284 ----------CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 114 bits (288), Expect = 5e-28
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 10/214 (4%)
Query: 274 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 333
L V + + ++P DL + + L + K+T + F++ K L L L NK+
Sbjct: 33 LRVVQCSDLGLEKVPKDLP---PDTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 334 KYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL 393
+ F L +L L L NQL+ + + L L + N++ ++ F+GL+ +
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQM 147
Query: 394 NTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN 453
V+L N L + G + L I ++ I+++ SL EL L N
Sbjct: 148 IVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGN 202
Query: 454 NFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL 487
+ + ++N L LSFN I+ VD +L
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Score = 47.3 bits (113), Expect = 9e-06
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLES 632
CP RC C+ V CS L +P LP + L L NN I +
Sbjct: 24 VCPFRCQCHLR------VVQCSDLGLEKVPKDLP-------PDTALLDLQNNKITEIKDG 70
Query: 633 PPESYKLITDLDLSYNNISHVD 654
++ K + L L N IS +
Sbjct: 71 DFKNLKNLHTLILINNKISKIS 92
Score = 30.7 bits (70), Expect = 1.6
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
+L + S + + D + LDL++N + I D + N TL L N+I
Sbjct: 32 HLRVVQCSDLGLEKVPKD-LP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 480 AIVDLRTLE 488
+ +
Sbjct: 89 SKISPGAFA 97
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 187 bits (476), Expect = 3e-51
Identities = 78/408 (19%), Positives = 146/408 (35%), Gaps = 35/408 (8%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
K++ LS N + L F P+L+ L+L I + G +Q + L L L N +
Sbjct: 30 TKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI-SILPSGVFSDL 221
+ F L+SL+ L L +L ++ L+ L+++ N I S FS+L
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 222 RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD--SLKELPSGLFANLPLLNTVIL 279
L+ +SN+ Q + + ++ +S + + G F + L +
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208
Query: 280 GESSIAELPSDLFWNSTNITNIVL-----TGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
+ + L L + L E + L
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 335 YLPEN---LFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQI--------- 382
Y ++ LF L + + +L + +E + G L+L + Q
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328
Query: 383 ----------NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432
N + L SL +DLS N L+F +L+ ++LS+N +
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 433 SLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQI 479
++ ++ + L+ LD +H+N + + N + LD+S
Sbjct: 387 TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Score = 172 bits (437), Expect = 6e-46
Identities = 90/468 (19%), Positives = 175/468 (37%), Gaps = 46/468 (9%)
Query: 90 GVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLE----SLNLRGNSITELYSGV 145
P YF L ++H+ LS NK I ++ + Q+ SL+L N + + G
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 146 FQYVPKLQVLDLGSNDVAY-MDPEIFKNLTSLRILNLDHNQL---INLTRAIFNNVPNLR 201
F+ +L L L +N + + + L L + L + NL + + + L
Sbjct: 197 FK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255
Query: 202 SLDISGNNISIL------PSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY 255
+L I ++ L +F+ L + +F S + F+ Q +++
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVN 313
Query: 256 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG-HKKLTSLPS 314
+ P+ +L L + S + ++ + L+ S
Sbjct: 314 C--KFGQFPTLKLKSLKRLT---FTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS---LVGLSGLNS 371
L L+L N + + N F L++L L+ +++ L+ ++ + L L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
LD+S F+GLSSL + ++ N + + NL ++LS ++
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQL 482
Query: 432 SSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKA 491
L +S++SL+ L++ HNNF + +++ LD S N I + L+
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-- 540
Query: 492 AAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVY 539
S + L N AC C + ++++ + V
Sbjct: 541 -----------FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 577
Score = 163 bits (415), Expect = 5e-43
Identities = 66/391 (16%), Positives = 126/391 (32%), Gaps = 47/391 (12%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
++L+L N + L S F P+LQVLDL ++ ++ +++L+ L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK-DLFAE 244
+ +L F+ + +L+ L N++ L + L+ L+ N Q F + F+
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 245 MKYLQVIKISY--------------------------HKDSLKELPSGLFANLPLLNTVI 278
+ L+ + +S + + + G F + L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 279 LGESSIAELPSDLFWNSTNITNIVL-----TGHKKLTSLPSTLFRDCKKLVKLELQRNKL 333
+ + L L + L E + L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 334 KYLPENLFES---LKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390
Y +++ + L + + +L + +E + G L+L + Q + L
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS--SLFDDWISSMTSLKEL 448
L +LE ++LS N +S TSLK L
Sbjct: 328 KRLTFTSNKGGNAF---------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 449 DLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
DL N + + LD + +
Sbjct: 379 DLSFNGVITMSSNFLGL-EQLEHLDFQHSNL 408
Score = 142 bits (359), Expect = 1e-35
Identities = 60/349 (17%), Positives = 126/349 (36%), Gaps = 17/349 (4%)
Query: 63 ENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHF--VKHILLSHNKEITGLHKD 120
+ I + L + + F N N+ +GL ++ L++ D
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEG-NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276
Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN 180
+F + S +L +I + + + Q L+L + K+L L +
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334
Query: 181 LDHNQLINLTRAIFNNVPNLRSLDISGNNISI--LPSGVFSDLRKLQTFYANSNRFQMFP 238
+ ++P+L LD+S N +S S L+ + N
Sbjct: 335 NKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
+ F ++ L+ + + + +F +L L + + + + +F +++
Sbjct: 390 SN-FLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 358
+ + G+ + +F + + L L+L + +L+ L F SL L LN+ +N
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 359 NIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGL-SSLNTVDLSHNLLT 404
++ L+ L LD S N + SSL ++L+ N
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 98.9 bits (247), Expect = 9e-22
Identities = 68/363 (18%), Positives = 124/363 (34%), Gaps = 35/363 (9%)
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSL 363
+P L L+L N L++L F S EL L+L +++ I +
Sbjct: 16 ELNFYKIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 364 VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLET 423
LS L++L L+ N ++ + L AF GLSSL + L E P+ L+
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKE 128
Query: 424 INLSYNRISSL-FDDWISSMTSLKELDLRHNNFSFIP----DQLDSIVSNKLTLDLSFNQ 478
+N+++N I S ++ S++T+L+ LDL N I L + L+LDLS N
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 479 IAIVD--------LRTLEIKAAAQDPNEDSTMVARSANIVILN--DNPIACNCSNYDLIR 528
+ + L L ++ N T + A + + + +
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248
Query: 529 FVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSI 588
+ + + L + + + +FS +
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF--SLVSVTIERVKDFSYNFGW 306
Query: 589 MSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYN 648
+ + P + + +L +N + + LDLS N
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLK-------RLTFTSNKGGNAF--SEVDLPSLEFLDLSRN 357
Query: 649 NIS 651
+S
Sbjct: 358 GLS 360
Score = 36.2 bits (84), Expect = 0.040
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 590 SVNCSSASLTHMPDYLPVTYEDKKATSIQ-LILHNNSINHFLESPPESYKLITDLDLSYN 648
+ C + +PD LP S + L L N + H S+ + LDLS
Sbjct: 11 TYQCMELNFYKIPDNLP--------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 649 NISHVD 654
I ++
Sbjct: 63 EIQTIE 68
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 187 bits (477), Expect = 3e-50
Identities = 76/505 (15%), Positives = 170/505 (33%), Gaps = 42/505 (8%)
Query: 10 RLTKRSNSLEIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLF 69
T + E Y ++ N + +
Sbjct: 358 SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417
Query: 70 SKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLE 129
K + ++ N + + + L ++ I +++ T + + E
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSP-FTYDNIAVD-----WE 470
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
N E + + L ++L + P+ +L L+ LN+ N+ I+
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530
Query: 190 TRAI---------FNNVPNLRSLDISGNNISILP-SGVFSDLRKLQTFYANSNRFQMFPK 239
+ + P ++ + NN+ P S + KL N+ +
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE- 589
Query: 240 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS-TNI 298
F L +K+ Y++ ++E+P A + + + + +P+ S +
Sbjct: 590 -AFGTNVKLTDLKLDYNQ--IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646
Query: 299 TNIVLTGHKKLTSLPSTLFRD-----CKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
++ + K+ S + + L N+++ P LF + + T+ L
Sbjct: 647 GSVDF-SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705
Query: 354 NNQLENI---------TSLVGLSGLNSLDLSWNQLEQI-NLIAFDGLSSLNTVDLSHNLL 403
NN + +I + L ++DL +N+L + + L L+ +D+S+N
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765
Query: 404 T-FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
+ F S LK + NRI + I++ SL +L + N+ +
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD--- 822
Query: 463 DSIVSNKLTLDLSFNQIAIVDLRTL 487
+ + LD++ N +D+ ++
Sbjct: 823 EKLTPQLYILDIADNPNISIDVTSV 847
Score = 163 bits (415), Expect = 3e-42
Identities = 75/413 (18%), Positives = 150/413 (36%), Gaps = 39/413 (9%)
Query: 94 PPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ 153
P L +K + + E + S + Y +L
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399
Query: 154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAI------FNNVPNLRSLDISG 207
+ DL + + +PE+ K + ++L Q+ NLT I + L+ + +
Sbjct: 400 LSDLLQDAIN-RNPEM-KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457
Query: 208 NNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL 267
+ + V + + + + ++ +K L +++ Y+ ++ +LP L
Sbjct: 458 SPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLTDVEL-YNCPNMTQLPDFL 511
Query: 268 FANLPLLNTVILGESSIAELPS---------DLFWNSTNITNIVLTGHKKLTSLP-STLF 317
+ +LP L ++ + + D I + G+ L P S
Sbjct: 512 Y-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM-GYNNLEEFPASASL 569
Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLS 375
+ KL L+ NK+++L F + +L L L NQ+E I + L S
Sbjct: 570 QKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627
Query: 376 WNQLEQI-NLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISS 433
N+L+ I N+ + + +VD S+N + + +N T+ LSYN I
Sbjct: 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687
Query: 434 LFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL-------TLDLSFNQI 479
+ ++ + + + L +N + IP+ T+DL FN++
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740
Score = 146 bits (371), Expect = 8e-37
Identities = 54/378 (14%), Positives = 126/378 (33%), Gaps = 41/378 (10%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
++ L+L G + +L+VL G++ + + +++
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 187 -INLTRAIFNNVPNLRSLDISGN------NISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
++ + + L D+ + + + L+ Q +NR K
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITFISK 442
Query: 240 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 299
+ LQ+I + + + E+ + N ++T
Sbjct: 443 A-IQRLTKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYENEELS-----WSNLKDLT 494
Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE---------NLFESLKELYTL 350
++ L +T LP L+ D +L L + N+ + + ++ ++
Sbjct: 495 DVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Query: 351 NLKNNQLENI---TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
+ N LE SL + L LD N++ + AF L + L +N +
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIE--- 608
Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDW-ISSMTSLKELDLRHNNFSFIPDQLDSIV 466
+ +E + S+N++ + + + S+ + +D +N + +
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667
Query: 467 SNKL-----TLDLSFNQI 479
+ T+ LS+N+I
Sbjct: 668 DDYKGINASTVTLSYNEI 685
Score = 124 bits (312), Expect = 2e-29
Identities = 47/327 (14%), Positives = 99/327 (30%), Gaps = 31/327 (9%)
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
N + L+L + L+ L ++ ++ +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 230 NSNRFQM-FPKDLFAEMKYLQVIKISYHKDS----LKELPSGLFANLPLLNTVILGESSI 284
+R +M + K + L + + + +K + +L L + I
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-TNRI 437
Query: 285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL 344
+ + T + I T + K E + +L
Sbjct: 438 TFISKAIQ-RLTKLQIIYFANS-PFTYDNIAVD-----WEDANSDYAKQYENEELSWSNL 490
Query: 345 KELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLI---------AFDGLSSL 393
K+L + L N L L L SL+++ N+ + D +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550
Query: 394 NTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452
+ +N L F + L++ V L ++ +N++ L + + L +L L +
Sbjct: 551 QIFYMGYNNLEEFPA----SASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDY 604
Query: 453 NNFSFIPDQLDSIVSNKLTLDLSFNQI 479
N IP+ + L S N++
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKL 631
Score = 118 bits (297), Expect = 1e-27
Identities = 39/313 (12%), Positives = 84/313 (26%), Gaps = 21/313 (6%)
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
N + + + +N + L ++G L +L+ ++ +
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
+ E + + H+ + LN L + +I P +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRM-HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422
Query: 299 TNIVLTGHK----KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
++ T ++T + + KL + + Y +
Sbjct: 423 ISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481
Query: 355 NQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY-- 412
N+ S L L ++L L L +++++ N
Sbjct: 482 NEEL---SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538
Query: 413 ---SPLKQCVNLETINLSYNRISSL-FDDWISSMTSLKELDLRHNNFSFIPD--QLDSIV 466
++ + YN + + M L LD HN + +
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT 598
Query: 467 SNKLTLDLSFNQI 479
L L +NQI
Sbjct: 599 ----DLKLDYNQI 607
Score = 78.0 bits (192), Expect = 5e-15
Identities = 35/226 (15%), Positives = 70/226 (30%), Gaps = 22/226 (9%)
Query: 60 LPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNK------E 113
S+ +T+ S + + F + I+LS+N
Sbjct: 659 EGRNISCSM-DDYKGINASTVTLSYN--EIQKFPTELFATGSPISTIILSNNLMTSIPEN 715
Query: 114 ITGLHKDIFKGTPQLESLNLRGNSITEL-YSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
+K T L +++LR N +T L +P L +D+ N + + N
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL-N 774
Query: 173 LTSLRILNLDHNQLI---NLTRAI---FNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
+ L+ + H + + R P+L L I N+I + + L L
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYIL-- 832
Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
N + + Y++ D +++ +
Sbjct: 833 -DIADNPNISID--VTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 71.8 bits (176), Expect = 4e-13
Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 8/185 (4%)
Query: 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLN 370
P + ++ L L K + L EL L+ + L G L
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372
Query: 371 ---SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE--TIN 425
S + + D LN DL + + + ++L+ I
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQIG 431
Query: 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQ-IAIVDL 484
NRI+ + I +T L+ + ++ F++ +D +N N+ ++ +L
Sbjct: 432 NLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490
Query: 485 RTLEI 489
+ L
Sbjct: 491 KDLTD 495
Score = 29.1 bits (65), Expect = 6.3
Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 423 TINLSYNRISSLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQIAI 481
N + + + + L L +PD + + K L + +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELK-VLSFGTHSETV 361
Query: 482 V 482
Sbjct: 362 S 362
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 179 bits (457), Expect = 4e-49
Identities = 73/386 (18%), Positives = 149/386 (38%), Gaps = 34/386 (8%)
Query: 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
T ++SL+L N IT + G + LQVL L S+ + ++ + F +L SL L+L N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISILP-SGVFSDLRKLQTFY-ANSNRFQMFPKDLF 242
L +L+ + F + +L+ L++ GN L + +F +L LQT N F + F
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 243 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 302
A + L ++I SL+ S ++ ++ + L S A L +++ +
Sbjct: 145 AGLTSLNELEIKA--LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202
Query: 303 LTGHKKLTSLPSTLFRDCKKLVKLELQRNK------------------LKYLPENLFESL 344
L L + + ++ + + L E F+
Sbjct: 203 LR-DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261
Query: 345 KELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
+ ++ + ++ L V + L + L + L + + + ++
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321
Query: 403 LTFDEYQYGYSPLKQCVNLETINLSYNRISSLF---DDWISSMTSLKELDLRHNNFSFIP 459
+ S + +LE ++LS N + + + SL+ L L N+ +
Sbjct: 322 VF----LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377
Query: 460 DQLDSIVSNK--LTLDLSFNQIAIVD 483
+ +++ K +LD+S N +
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMP 403
Score = 178 bits (453), Expect = 2e-48
Identities = 72/445 (16%), Positives = 151/445 (33%), Gaps = 44/445 (9%)
Query: 91 VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVP 150
+ F L ++ + + + + + + + F G L L ++ S+ S + +
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
+ L L ++ A++ L+S+R L L L + +
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
S+L F++L KL + + + F + + + + + +
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDV--VSELGKVE 284
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
+ + + + + S ++ + I + + K+ +P + + K L L+L
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE-NSKVFLVPCSFSQHLKSLEFLDLSE 343
Query: 331 NKLKYLP---ENLFESLKELYTLNLKNNQLENITSLVG----LSGLNSLDLSWNQLEQIN 383
N + + L TL L N L ++ L L SLD+S N +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403
Query: 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
+ + ++LS + LE +++S N + S +
Sbjct: 404 D-SCQWPEKMRFLNLSSTGIRVV-------KTCIPQTLEVLDVSNNNLDSFS----LFLP 451
Query: 444 SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMV 503
L+EL + N +PD S+ L + +S NQ+ V +
Sbjct: 452 RLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDR-------------- 495
Query: 504 ARSANIVILNDNPIACNCSNYDLIR 528
S + L+ NP C+C D +
Sbjct: 496 LTSLQKIWLHTNPWDCSCPRIDYLS 520
Score = 152 bits (386), Expect = 1e-39
Identities = 53/348 (15%), Positives = 122/348 (35%), Gaps = 24/348 (6%)
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
V D S + + +++ L+L N++ + NL+ L + +
Sbjct: 5 DASGVCDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP-SGLF 268
I+ + F L L+ + N F + L+ + + + + L + LF
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP--YQTLGVTSLF 119
Query: 269 ANLPLLNTVILGES-SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 327
NL L T+ +G + +E+ F T++ + + L + S + + + L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI-KALSLRNYQSQSLKSIRDIHHLT 178
Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLI 385
L ++ +L E + L + L L++ L + L + + + +
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238
Query: 386 AFDGLSSLNTVDLSHNLLTFDEYQYGY--------------SPLKQCVNLETINLSYNRI 431
+F+ L L L + + FD+ + V + +++ +
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298
Query: 432 SSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
S + +K + + ++ +P + + LDLS N +
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346
Score = 112 bits (281), Expect = 5e-26
Identities = 59/388 (15%), Positives = 128/388 (32%), Gaps = 45/388 (11%)
Query: 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329
+ S +PS L + ++ L+ K+T + R C L L L+
Sbjct: 3 SCDASGVCDGRSRSFTSIPSGLT---AAMKSLDLS-FNKITYIGHGDLRACANLQVLILK 58
Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIA- 386
+++ + + F SL L L+L +N L +++S LS L L+L N + + + +
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
F L++L T+ + + + +L + + + + + S+ +
Sbjct: 119 FPNLTNLQTLRIGNVETF---SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175
Query: 447 ELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARS 506
L L + +F+ + I+S+ L+L +A L + + + +
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA------ 229
Query: 507 ANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPEN 566
+L D I +S +E G+ P
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELS----------------EVEFDDCTLNGLGDFNPSE 273
Query: 567 LTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQ-LILHNNS 625
S + +V + + ++ ++ + + N+
Sbjct: 274 SD------------VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321
Query: 626 INHFLESPPESYKLITDLDLSYNNISHV 653
+ S + K + LDLS N +
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEE 349
Score = 61.7 bits (150), Expect = 4e-10
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 364 VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLET 423
+ D I +++ ++DLS N +T G+ L+ C NL+
Sbjct: 2 LSCDASGVCDGRSRSFTSIP---SGLTAAMKSLDLSFNKIT----YIGHGDLRACANLQV 54
Query: 424 INLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD 483
+ L +RI+++ D S+ SL+ LDL N+ S + +S+ L+L N +
Sbjct: 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114
Query: 484 LRTL 487
+ +L
Sbjct: 115 VTSL 118
Score = 35.5 bits (82), Expect = 0.054
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 590 SVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNN 649
+ S S T +P L + L L N I + + + L L +
Sbjct: 9 VCDGRSRSFTSIPSGLTAAMK-------SLDLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 650 ISHVD 654
I+ ++
Sbjct: 62 INTIE 66
Score = 28.9 bits (65), Expect = 6.1
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 619 LILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLEL 665
L L + I P++ + LD+S NN+ P L L +
Sbjct: 415 LNLSSTGIRVVKTCIPQT---LEVLDVSNNNLDSFSLFLPRLQELYI 458
Score = 28.5 bits (64), Expect = 8.8
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 580 CNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKL 639
+ + +N SS + + +P T E L + NN+++ F
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE-------VLDVSNNNLDSF----SLFLPR 452
Query: 640 ITDLDLSYNNISHVD--TMYPYLNHLEL 665
+ +L +S N + + +++P L +++
Sbjct: 453 LQELYISRNKLKTLPDASLFPVLLVMKI 480
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 170 bits (434), Expect = 8e-48
Identities = 65/288 (22%), Positives = 112/288 (38%), Gaps = 23/288 (7%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
P L+L+ N I+EL F+ + L L L +N ++ + + F L L+ L + N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ--MFPKDLFA 243
L+ + + +L L I N I +P GVFS LR + N + F F
Sbjct: 114 LVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 244 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 303
+K L ++IS K L +P L L L+ L + I + + + + + L
Sbjct: 171 GLK-LNYLRISEAK--LTGIPKDLPETLNELH---LDHNKIQAIELEDLLRYSKLYRLGL 224
Query: 304 TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS- 362
GH ++ + + L +L L NKL +P LK L + L N + +
Sbjct: 225 -GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVN 282
Query: 363 -------LVGLSGLNSLDLSWNQLEQINL--IAFDGLSSLNTVDLSHN 401
V + N + L N + + F ++ + +
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 151 bits (384), Expect = 5e-41
Identities = 71/362 (19%), Positives = 135/362 (37%), Gaps = 74/362 (20%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
L + + + + P +LDL +ND++ + + FK L L L L +N++
Sbjct: 34 HLRVVQCSDLGLKAVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
+ F+ + L+ L IS N++ +P + S L +L + NR + PK +F+ ++
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLR 147
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
+ I++ + G F L
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGL----------------------------------- 172
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLV 364
KL L + KL +P++L E+L EL+ L +N+++ I L+
Sbjct: 173 ---------------KLNYLRISEAKLTGIPKDLPETLNELH---LDHNKIQAIELEDLL 214
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
S L L L NQ+ I + L +L + L +N L+ G LK L+ +
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLK---LLQVV 269
Query: 425 NLSYNRISSLFDDWISSM------TSLKELDLRHNNFSF--IPDQLDSIVSNKLTLDLSF 476
L N I+ + + + + L +N + + V+++L +
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329
Query: 477 NQ 478
+
Sbjct: 330 YK 331
Score = 134 bits (339), Expect = 6e-35
Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 43/297 (14%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
+I+ + F + + F L ++ + +S N + + ++
Sbjct: 65 DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPS 123
Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN--DVAYMDPEIFKNLTSLRILNL 181
L L + N I ++ GVF + + +++G N + + +P F L L L +
Sbjct: 124 S---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179
Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL 241
+L + + + L L + N I + KL N+ +M
Sbjct: 180 SEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236
Query: 242 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 301
+ + L+ + + +K L +P+G +L LL V L ++I ++ + F
Sbjct: 237 LSFLPTLRELHLDNNK--LSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDF--------- 284
Query: 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQ 356
P + L N + Y + F + + + N +
Sbjct: 285 ----------CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 129 bits (327), Expect = 3e-33
Identities = 68/334 (20%), Positives = 116/334 (34%), Gaps = 90/334 (26%)
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
L+V+ + + EI + T L +L +N + L + F + +L +L + N IS
Sbjct: 35 LRVVQCSDLGLKAVPKEISPDTTLL---DLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
+ FS LRKLQ Y + N L E+P L ++L
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNH--------------------------LVEIPPNLPSSL 125
Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
L + N ++ +P +F + + +E+ N
Sbjct: 126 VEL---------------RIHDN-------------RIRKVPKGVFSGLRNMNCIEMGGN 157
Query: 332 KLK--YLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDG 389
L+ F+ LK L L + +L I + LN L L N+++ I L
Sbjct: 158 PLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLR 215
Query: 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELD 449
S L + L +N+I + + +S + +L+EL
Sbjct: 216 YS----------------------------KLYRLGLGHNQIRMIENGSLSFLPTLRELH 247
Query: 450 LRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD 483
L +N S +P L + + L N I V
Sbjct: 248 LDNNKLSRVPAGLPDL-KLLQVVYLHTNNITKVG 280
Score = 46.5 bits (111), Expect = 2e-05
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 571 TKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
+ CP C+C+ V CS L +P + + L L NN I+
Sbjct: 24 SAMCPFGCHCHLR------VVQCSDLGLKAVPKEIS-------PDTTLLDLQNNDISELR 70
Query: 631 ESPPESYKLITDLDLSYNNISHVD 654
+ + + + L L N IS +
Sbjct: 71 KDDFKGLQHLYALVLVNNKISKIH 94
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 169 bits (431), Expect = 2e-46
Identities = 64/295 (21%), Positives = 105/295 (35%), Gaps = 59/295 (20%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
+ ++ + + I LNL N+I + + F+++ L+VL LG N + ++
Sbjct: 62 TRRGLSEVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY- 228
F L SL L L N L + F + LR L + N I +PS F+ + L
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
Query: 229 ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP 288
+ L+ + G F L L + LG +I ++P
Sbjct: 179 GELKK--------------------------LEYISEGAFEGLFNLKYLNLGMCNIKDMP 212
Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
+ L +LE+ N + F L L
Sbjct: 213 N---------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245
Query: 349 TLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L + N+Q+ I + GL+ L L+L+ N L + F L L + L HN
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 161 bits (409), Expect = 3e-43
Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 11/259 (4%)
Query: 198 PNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK 257
+ + +S +P G+ S+ R L N QM D F + +L+V+++ +
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSNTRYL---NLMENNIQMIQADTFRHLHHLEVLQLGRNS 110
Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
++++ G F L LNT+ L ++ + +PS F + + + L + + S+PS F
Sbjct: 111 --IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL-RNNPIESIPSYAF 167
Query: 318 RDCKKLVKLELQR-NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
L++L+L KL+Y+ E FE L L LNL ++++ +L L GL L++S
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
N +I +F GLSSL + + ++ ++ E +L +NL++N +SSL
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN----AFDGLASLVELNLAHNNLSSLPH 283
Query: 437 DWISSMTSLKELDLRHNNF 455
D + + L EL L HN +
Sbjct: 284 DLFTPLRYLVELHLHHNPW 302
Score = 149 bits (379), Expect = 3e-39
Identities = 73/318 (22%), Positives = 126/318 (39%), Gaps = 37/318 (11%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
L E+P G+ +N LN L E++I + +D F + ++ + L G + + F
Sbjct: 65 GLSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQL-GRNSIRQIEVGAFN 120
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLS- 375
L LEL N L +P FE L +L L L+NN +E+I S + L LDL
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180
Query: 376 WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
+LE I+ AF+GL +L ++L + L V LE + +S N +
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN------LTPLVGLEELEMSGNHFPEIR 234
Query: 436 DDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQD 495
++SLK+L + ++ S I +++ + L+L+ N L +L
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-----LSSLPHDLFTPL 289
Query: 496 PNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFG-- 553
+ L+ NP C+C I +++ + + + C
Sbjct: 290 RY---------LVELHLHHNPWNCDCD----ILWLAWWLREYIPTNST---CCGRCHAPM 333
Query: 554 -NAGVGINSVRPENLTCD 570
G + V + C
Sbjct: 334 HMRGRYLVEVDQASFQCS 351
Score = 147 bits (372), Expect = 3e-38
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 6/215 (2%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
+ F LH ++ + L N I + F G L +L L N +T + SG F+Y+ K
Sbjct: 90 IQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH-NQLINLTRAIFNNVPNLRSLDISGNNI 210
L+ L L +N + + F + SL L+L +L ++ F + NL+ L++ NI
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
+P+ + L L+ + N F F + L+ + + + + + F
Sbjct: 209 KDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ--VSLIERNAFDG 264
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
L L + L ++++ LP DLF + + L
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299
Score = 121 bits (306), Expect = 1e-29
Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 11/172 (6%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
+T I + AF + + F+ + + + L K++ + + F+
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193
Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
G L+ LNL +I ++ + + L+ L++ N + P F L+SL+ L + +
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
+Q+ + R F+ + +L L+++ NN+S LP +F+ LR L + + N +
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 82.5 bits (204), Expect = 7e-17
Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 34/170 (20%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQL 379
+ K+ R L +P+ + + + L L N ++ I + L L L L N +
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 380 EQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI 439
QI + AF+GL+ +L T+ L N ++ +
Sbjct: 112 RQIEVGAFNGLA----------------------------SLNTLELFDNWLTVIPSGAF 143
Query: 440 SSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS-FNQIAIVDLRTLE 488
++ L+EL LR+N IP + V + + LDL ++ + E
Sbjct: 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193
Score = 50.9 bits (122), Expect = 1e-06
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 571 TKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
+ CP+ C C+ V C+ L+ +P +P + + L L N+I
Sbjct: 43 PQNCPSVCSCSNQF----SKVVCTRRGLSEVPQGIP-------SNTRYLNLMENNIQMIQ 91
Query: 631 ESPPESYKLITDLDLSYNNISHVD 654
+ L L N+I ++
Sbjct: 92 ADTFRHLHHLEVLQLGRNSIRQIE 115
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 165 bits (420), Expect = 9e-46
Identities = 67/302 (22%), Positives = 121/302 (40%), Gaps = 39/302 (12%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
+ + + + + +SL+L N IT + + Q LQ L L SN + ++ +
Sbjct: 39 SSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI-SILPSGVFSDLRKLQTFY 228
F +L SL L+L +N L NL+ + F + +L L++ GN ++ + +FS L KLQ
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155
Query: 229 ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP 288
+ + ++ FA L L + + S +
Sbjct: 156 VGNMD-------------------------TFTKIQRKDFAGLTFLEELEIDASDLQSYE 190
Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-----LPENLFES 343
+ N+++++L K+ L + LEL+ L L S
Sbjct: 191 PKSLKSIQNVSHLIL-HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249
Query: 344 LKELYTLNLKNNQLENITSLV----GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLS 399
L + +T E++ ++ +SGL L+ S NQL+ + FD L+SL + L
Sbjct: 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309
Query: 400 HN 401
N
Sbjct: 310 TN 311
Score = 142 bits (359), Expect = 2e-37
Identities = 49/269 (18%), Positives = 101/269 (37%), Gaps = 29/269 (10%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
+S ++ ++L+ N I + +D F LE L+L N ++ L S F+ +
Sbjct: 67 ISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 152 LQVLDLGSNDVAYMDPE-IFKNLTSLRILNLDHN-QLINLTRAIFNNVPNLRSLDISGNN 209
L L+L N + +F +LT L+IL + + + R F + L L+I ++
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY---HKDSLKELPSG 266
+ ++ + + + + + ++ +++ EL +G
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245
Query: 267 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 326
+ N+ +T + L + L L++L
Sbjct: 246 ET---------------------NSLIKKFTFRNVKIT-DESLFQVMK-LLNQISGLLEL 282
Query: 327 ELQRNKLKYLPENLFESLKELYTLNLKNN 355
E RN+LK +P+ +F+ L L + L N
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 113 bits (285), Expect = 1e-27
Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 10/221 (4%)
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
S+ +PS L + ++ L + ++T + ++ + C L L L
Sbjct: 30 CDRNGICKGSSGSLNSIPSGLT---EAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTS 85
Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQIN-LIAF 387
N + + E+ F SL L L+L N L N++S LS L L+L N + + F
Sbjct: 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE 447
L+ L + + + F + Q LE + + + + S + S+ ++
Sbjct: 146 SHLTKLQILRVGNMDT-FTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202
Query: 448 LDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLE 488
L L + + + S+ L+L + L
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243
Score = 93.3 bits (232), Expect = 1e-20
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 10/152 (6%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
+ F GL F++ + + + + K + L L L
Sbjct: 165 IQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223
Query: 152 LQVLDLGSNDVAYM--------DPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSL 203
++ L+L D+ + + R + + L + + N + L L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLEL 282
Query: 204 DISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
+ S N + +P G+F L LQ + ++N +
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
Score = 78.6 bits (194), Expect = 7e-16
Identities = 43/228 (18%), Positives = 75/228 (32%), Gaps = 57/228 (25%)
Query: 291 LFWNSTNITNIVLTGHKKLTSL--PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
+ W I ++ SL L +P L E++K L
Sbjct: 7 MVWVLGVIISLSKEESSNQASLSCDRNGICKG--------SSGSLNSIPSGLTEAVKSLD 58
Query: 349 TLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT-- 404
L NN++ I++ L L +L L+ N + I +F L SL +DLS+N L+
Sbjct: 59 ---LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115
Query: 405 ----FDEYQYGYSPLKQCVNLETINLSYNRISSLFD------------------------ 436
F +L +NL N +L +
Sbjct: 116 SSSWFK----------PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 437 --DWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV 482
+ +T L+EL++ ++ + + N L L Q ++
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213
Score = 40.5 bits (95), Expect = 0.001
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 567 LTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSI 626
L+ + A C+ + SS SL +P L L L NN I
Sbjct: 17 LSKEESSNQASLSCDRNG-----ICKGSSGSLNSIPSGLT-------EAVKSLDLSNNRI 64
Query: 627 NHFLESPPESYKLITDLDLSYNNISHVD 654
+ S + + L L+ N I+ ++
Sbjct: 65 TYISNSDLQRCVNLQALVLTSNGINTIE 92
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 167 bits (424), Expect = 2e-45
Identities = 60/295 (20%), Positives = 100/295 (33%), Gaps = 59/295 (20%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
K + + I LNL N I + F+++ L++L L N + ++
Sbjct: 51 VRKNLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY- 228
F L +L L L N+L + F + L+ L + N I +PS F+ + L+
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167
Query: 229 ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP 288
R L + G F L L + L ++ E+P
Sbjct: 168 GELKR--------------------------LSYISEGAFEGLSNLRYLNLAMCNLREIP 201
Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
+ KL +L+L N L + F+ L L
Sbjct: 202 N---------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234
Query: 349 TLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L + +Q++ I L L ++L+ N L + F L L + L HN
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 157 bits (400), Expect = 3e-42
Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 11/259 (4%)
Query: 198 PNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK 257
+ N+ +P G+ ++ R L + N+ Q+ + F +++L+++++S +
Sbjct: 43 NQFSKVICVRKNLREVPDGISTNTRLL---NLHENQIQIIKVNSFKHLRHLEILQLSRNH 99
Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
++ + G F L LNT+ L ++ + +P+ F + + + L + + S+PS F
Sbjct: 100 --IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL-RNNPIESIPSYAF 156
Query: 318 RDCKKLVKLELQR-NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
L +L+L +L Y+ E FE L L LNL L I +L L L+ LDLS
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSG 216
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
N L I +F GL L + + + + E + + L+ +L INL++N ++ L
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQ---SLVEINLAHNNLTLLPH 272
Query: 437 DWISSMTSLKELDLRHNNF 455
D + + L+ + L HN +
Sbjct: 273 DLFTPLHHLERIHLHHNPW 291
Score = 149 bits (379), Expect = 3e-39
Identities = 70/318 (22%), Positives = 123/318 (38%), Gaps = 37/318 (11%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
+L+E+P G+ N LLN L E+ I + + F + ++ + L + ++ F
Sbjct: 54 NLREVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQL-SRNHIRTIEIGAFN 109
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLS- 375
L LEL N+L +P F L +L L L+NN +E+I S + L LDL
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Query: 376 WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
+L I+ AF+GLS+L ++L+ L L + L+ ++LS N +S++
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN------LTPLIKLDELDLSGNHLSAIR 223
Query: 436 DDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQD 495
+ L++L + + I + + + ++L+ N L L
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-----LTLLPHDLFTPL 278
Query: 496 PNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFG-- 553
+ + + L+ NP CNC L ++ C
Sbjct: 279 HHLER---------IHLHHNPWNCNCDILWLSWWIKDM-------APSNTACCARCNTPP 322
Query: 554 -NAGVGINSVRPENLTCD 570
G I + TC
Sbjct: 323 NLKGRYIGELDQNYFTCY 340
Score = 147 bits (374), Expect = 1e-38
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 6/215 (2%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
+ F L ++ + LS N I + F G L +L L N +T + +G F Y+ K
Sbjct: 79 IKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH-NQLINLTRAIFNNVPNLRSLDISGNNI 210
L+ L L +N + + F + SLR L+L +L ++ F + NLR L+++ N+
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
+P+ + L KL + N F + +LQ + + + ++ + F N
Sbjct: 198 REIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ--IQVIERNAFDN 253
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
L L + L +++ LP DLF ++ I L
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288
Score = 120 bits (302), Expect = 3e-29
Identities = 39/172 (22%), Positives = 81/172 (47%), Gaps = 11/172 (6%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
+TTI AF + + F+ + ++ + L K ++ + + F+
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
G L LNL ++ E+ + KL LDL N ++ + P F+ L L+ L +
Sbjct: 183 GLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240
Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
+Q+ + R F+N+ +L ++++ NN+++LP +F+ L L+ + + N +
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 82.1 bits (203), Expect = 1e-16
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 34/166 (20%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQIN 383
+ R L+ +P+ + + + L L NQ++ I S L L L LS N + I
Sbjct: 48 VICVRKNLREVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104
Query: 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
+ AF+GL+ NL T+ L NR++++ + ++
Sbjct: 105 IGAFNGLA----------------------------NLNTLELFDNRLTTIPNGAFVYLS 136
Query: 444 SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS-FNQIAIVDLRTLE 488
LKEL LR+N IP + + + LDL +++ + E
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Score = 49.7 bits (119), Expect = 2e-06
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 571 TKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
+ CP+ C C+ V C +L +PD + + L LH N I
Sbjct: 32 AQTCPSVCSCSNQFS----KVICVRKNLREVPDGIS-------TNTRLLNLHENQIQIIK 80
Query: 631 ESPPESYKLITDLDLSYNNISHVD 654
+ + + + L LS N+I ++
Sbjct: 81 VNSFKHLRHLEILQLSRNHIRTIE 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 166 bits (422), Expect = 8e-45
Identities = 65/387 (16%), Positives = 133/387 (34%), Gaps = 41/387 (10%)
Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI 178
+I + + + + +S+ + + + Q ++ LDL N ++ + T L +
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
LNL N L ++ LR+LD++ N + L ++T +A +N
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVS 115
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNSTN 297
K + + + + L + + L + I + ++L +S
Sbjct: 116 CSRGQGKKNIYL-----ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 298 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
+ ++ L + + + + KL L+L NKL ++ F+S + ++L+NN+L
Sbjct: 171 LEHLNL-QYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226
Query: 358 ENI-TSLVGLSGLNSLDLSWNQLEQINL-IAFDGLSSLNTVDLSHN-------------- 401
I +L L DL N L F + TV
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 402 -LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT-------SLKELDLRHN 453
L + Y P L + + + S + +E+D
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346
Query: 454 NFSFIPDQLDSIVSNKLTLDLSFNQIA 480
+ + DQ+ K+TL+ +
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALD 373
Score = 129 bits (325), Expect = 6e-32
Identities = 49/418 (11%), Positives = 121/418 (28%), Gaps = 32/418 (7%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
+S ++ + LS N + + L +L+L N + EL G P
Sbjct: 49 ISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLVG-----PS 100
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
++ L +N+++ + + ++ L +N++ L ++ LD+ N I
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 212 ILPSG-VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
+ + + L+ N + L+ + +S +K L + F +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNK--LAFMGPE-FQS 212
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
+ + L + + + S N+ + L G+ F +++ + +
Sbjct: 213 AAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAK 269
Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390
+K L E + E++ + L +L + L + L
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF-ADRLIALKRKEHALLSGQGSETERL 328
Query: 391 S-------SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
+D Q + T+ + + +
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQV----TLRKQAKITLEQKKKALDEQVSNGRRAHA 384
Query: 444 SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDST 501
L + + + +L + + + A +D +
Sbjct: 385 ELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442
Score = 115 bits (290), Expect = 2e-27
Identities = 54/466 (11%), Positives = 127/466 (27%), Gaps = 96/466 (20%)
Query: 193 IFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK 252
I N + ++ +++ + + ++ + N A L+++
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 253 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 312
+S + L E +L L T+ L + + EL
Sbjct: 65 LSSNV--LYETLD--LESLSTLRTLDLNNNYVQELLV----------------------- 97
Query: 313 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLN 370
+ L N + + + + K +Y L NN++ + L S +
Sbjct: 98 -------GPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147
Query: 371 SLDLSWNQLEQINLIAFDG-LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN 429
LDL N+++ +N +L ++L +N + L+T++LS N
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY------DVKGQVVFAKLKTLDLSSN 201
Query: 430 RISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEI 489
+++ + S + + LR+N I L + L +
Sbjct: 202 KLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQN----------------LEHFD- 243
Query: 490 KAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNL 549
L N C + +++ Q ++ +T
Sbjct: 244 ----------------------LRGNGFHCGTLRDFFSKN--QRVQTVAKQTVKKLTGQN 279
Query: 550 ECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTY 609
E C+ P P ++ + +
Sbjct: 280 EEECT---VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER---- 332
Query: 610 EDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT 655
+ +A ++ ++ + L+ + +
Sbjct: 333 -ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377
Score = 114 bits (286), Expect = 5e-27
Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 14/196 (7%)
Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
++ N +T L ++L + + +L+L N L + +L
Sbjct: 3 HEIKQNGNRYKIEKVT-DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 349 TLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
LNL +N L L LS L +LDL+ N ++++ S+ T+ ++N ++
Sbjct: 62 LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNIS---- 112
Query: 409 QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSN 468
+ + I L+ N+I+ L D + ++ LDL+ N + + S+
Sbjct: 113 ---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 469 KLT-LDLSFNQIAIVD 483
L L+L +N I V
Sbjct: 170 TLEHLNLQYNFIYDVK 185
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 159 bits (403), Expect = 7e-44
Identities = 58/282 (20%), Positives = 99/282 (35%), Gaps = 57/282 (20%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD--PEIFKNLTSLRILNLDH 183
L L N + L GVF + +L L L SN +++ + TSL+ L+L
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQMFPKDLF 242
N +I ++ F + L LD +N+ + VF LR L +
Sbjct: 88 NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--------- 137
Query: 243 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 302
+ +G+F L L +
Sbjct: 138 -----------------TRVAFNGIFNGLSSLEV------------------------LK 156
Query: 303 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS 362
+ G+ + +F + + L L+L + +L+ L F SL L LN+ +N ++ +
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 363 --LVGLSGLNSLDLSWNQLEQINLIAFDGL-SSLNTVDLSHN 401
L+ L LD S N + SSL ++L+ N
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 138 bits (351), Expect = 8e-37
Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 14/263 (5%)
Query: 199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD 258
+ + + ++ +P+G+ S +L SN+ Q P +F ++ L + +S +
Sbjct: 8 SGTEIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST-LF 317
S K S L + L + + + S+ F + ++ H L + +F
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDF-QHSNLKQMSEFSVF 122
Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ-LENITS--LVGLSGLNSLDL 374
+ L+ L++ + +F L L L + N EN L L LDL
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182
Query: 375 SWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434
S QLEQ++ AF+ LSSL +++SHN + P K +L+ ++ S N I +
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNHIMTS 238
Query: 435 FDDWISSM-TSLKELDLRHNNFS 456
+ +SL L+L N+F+
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDFA 261
Score = 134 bits (340), Expect = 3e-35
Identities = 68/320 (21%), Positives = 127/320 (39%), Gaps = 40/320 (12%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG-HKKLTSLPSTLF 317
L +P+G+ ++ L L + + LP +F T +T + L+ S
Sbjct: 18 GLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74
Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS---LVGLSGLNSLDL 374
L L+L N + + N F L++L L+ +++ L+ ++ + L L LD+
Sbjct: 75 FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133
Query: 375 SWNQLEQINLIAFDGLSSLNTVDLSHN--LLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432
S F+GLSSL + ++ N F + NL ++LS ++
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQCQLE 188
Query: 433 SLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAA 492
L +S++SL+ L++ HNNF + +++ LD S N I + L+
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ---- 244
Query: 493 AQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECF 552
S + L N AC C + ++++ + V + +EC
Sbjct: 245 ---------HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE------VERMECA 289
Query: 553 G---NAGVGINSVRPENLTC 569
G+ + S+ N+TC
Sbjct: 290 TPSDKQGMPVLSL---NITC 306
Score = 128 bits (325), Expect = 3e-33
Identities = 52/270 (19%), Positives = 92/270 (34%), Gaps = 56/270 (20%)
Query: 92 LSPPYFDGLHFVKHILLSHNK-EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVP 150
L FD L + + LS N G GT L+ L+L N + + S F +
Sbjct: 43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLE 101
Query: 151 KLQVLDLGSNDVAYM-DPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
+L+ LD +++ M + +F +L +L L++ H IFN + +L L ++GN+
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 210 -ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF 268
+F++LR L + + L++L F
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQ--------------------------LEQLSPTAF 195
Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
+L L + + H SL + ++ L L+
Sbjct: 196 NSLSSLQVLNM-------------------------SHNNFFSLDTFPYKCLNSLQVLDY 230
Query: 329 QRNKLKYLPENLFESL-KELYTLNLKNNQL 357
N + + + L LNL N
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 113 bits (285), Expect = 7e-28
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 3/147 (2%)
Query: 91 VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS-ITELYSGVFQYV 149
+ F L + ++ +SH IF G LE L + GNS +F +
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
L LDL + + P F +L+SL++LN+ HN +L + + +L+ LD S N+
Sbjct: 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234
Query: 210 ISILPSGVFSDL-RKLQTFYANSNRFQ 235
I L N F
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 43.1 bits (102), Expect = 2e-04
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 25/113 (22%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYE-----DKKATSIQ---------- 618
CP+RC C+ + + C+S LT +P +P + K S+
Sbjct: 1 CPSRCSCSGT------EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQL 54
Query: 619 --LILHNNSINHFLESPPESYKL--ITDLDLSYNNISHVDTMYPYLNHLELID 667
L L +N ++ + + LDLS+N + + + + L LE +D
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 154 bits (391), Expect = 2e-42
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 31/249 (12%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
+ + + I + + + L GN I+ + + F+ L +L L SN +A +D
Sbjct: 19 PQQGLQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 170 FKNLTSLRILNLDHN-QLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY 228
F L L L+L N QL ++ A F+ + L +L + + L G+F L LQ Y
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 229 ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP 288
N L+ LP F +L L + L + I+ +P
Sbjct: 136 LQDNA--------------------------LQALPDDTFRDLGNLTHLFLHGNRISSVP 169
Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
F ++ ++L + ++ + FRD +L+ L L N L LP L+ L
Sbjct: 170 ERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228
Query: 349 TLNLKNNQL 357
L L +N
Sbjct: 229 YLRLNDNPW 237
Score = 145 bits (367), Expect = 4e-39
Identities = 43/191 (22%), Positives = 87/191 (45%), Gaps = 9/191 (4%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
I+ + +F + + + F GL ++ + LS N ++ + F
Sbjct: 43 RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102
Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
G +L +L+L + EL G+F+ + LQ L L N + + + F++L +L L L
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162
Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFA 243
N++ ++ F + +L L + N ++ + F DL +L T Y +N P + A
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Query: 244 EMKYLQVIKIS 254
++ LQ ++++
Sbjct: 223 PLRALQYLRLN 233
Score = 137 bits (346), Expect = 3e-36
Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 11/228 (4%)
Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS 289
Q P + A + + + H + + +P+ F L + L + +A + +
Sbjct: 19 PQQGLQAVPVGIPAASQRIFL-----HGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73
Query: 290 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
F + + L+ + +L S+ F +L L L R L+ L LF L L
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 350 LNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
L L++N L+ + L L L L N++ + AF GL SL+ + L N +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
+ L T+ L N +S+L + ++ + +L+ L L N +
Sbjct: 194 ----PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Score = 132 bits (333), Expect = 2e-34
Identities = 67/301 (22%), Positives = 112/301 (37%), Gaps = 37/301 (12%)
Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
T + + +P + I L G++ ++ +P+ FR C+ L L L N L
Sbjct: 14 VTTSCPQQGLQAVPVGIP---AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLA 69
Query: 335 YLPENLFESLKELYTLNL-KNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLS 391
+ F L L L+L N QL ++ GL L++L L L+++ F GL+
Sbjct: 70 RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
+L + L N L + NL + L NRISS+ + + SL L L
Sbjct: 130 ALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185
Query: 452 HNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVI 511
N + + + +TL L N ++ + L R+ +
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP--------------LRALQYLR 231
Query: 512 LNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFG---NAGVGINSVRPENLT 568
LNDNP C+C L ++ K + + C AG + + +L
Sbjct: 232 LNDNPWVCDCRARPLWAWLQKF---------RGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
Query: 569 C 569
Sbjct: 283 G 283
Score = 124 bits (313), Expect = 8e-32
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 11/170 (6%)
Query: 73 NITTINTLAFSNSPS----------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIF 122
+ I+ AF+ + + P F GL + + L + L +F
Sbjct: 67 VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLF 125
Query: 123 KGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
+G L+ L L+ N++ L F+ + L L L N ++ + F+ L SL L L
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185
Query: 183 HNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
N++ ++ F ++ L +L + NN+S LP+ + LR LQ N N
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 77.3 bits (191), Expect = 8e-16
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
+ + F + + L F L + H+ L N+ I+ + + F+
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFR 174
Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
G L+ L L N + ++ F+ + +L L L +N+++ + E L +L+ L L+
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
Query: 184 NQL 186
N
Sbjct: 235 NPW 237
Score = 52.7 bits (127), Expect = 1e-07
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLES 632
PCP C C P ++ +C L +P +P + ++ LH N I+H +
Sbjct: 1 PCPGACVCYNEP---KVTTSCPQQGLQAVPVGIPAASQ-------RIFLHGNRISHVPAA 50
Query: 633 PPESYKLITDLDLSYNNISHVD 654
+ + +T L L N ++ +D
Sbjct: 51 SFRACRNLTILWLHSNVLARID 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 152 bits (385), Expect = 3e-41
Identities = 60/347 (17%), Positives = 117/347 (33%), Gaps = 71/347 (20%)
Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI 178
+I + + + + +S+ + + + Q ++ LDL N ++ + T L +
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
LNL N L ++ LR+LD++ N + L ++T +A +N
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNN----- 110
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
+ + + L N
Sbjct: 111 ---------------------ISRVSCSRGQGKKNI---------------YLANN---- 130
Query: 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQL 357
K+T L ++ L+L+ N++ + L S L LNL+ N +
Sbjct: 131 ---------KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181
Query: 358 ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQ 417
++ V + L +LDLS N+L + F + + + L +N L E L+
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIE-----KALRF 235
Query: 418 CVNLETINLSYNRISSL-FDDWISSMTSLKELDLRHNNFSFIPDQLD 463
NLE +L N D+ S ++ + + Q +
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNE 280
Score = 143 bits (362), Expect = 4e-38
Identities = 56/308 (18%), Positives = 116/308 (37%), Gaps = 44/308 (14%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
+ K ++ + + + + ++ L+L GN ++++ + KL++L+
Sbjct: 6 KQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
L SN + ++L++LR L+L++N + L P++ +L + NNIS +
Sbjct: 65 LSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS 117
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLN 275
+ + Y +N+ M +Q + + ++ + + L A+ L
Sbjct: 118 RGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLE 172
Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335
+ L + I ++ + KL L+L NKL +
Sbjct: 173 HLNLQYNFIYDVKGQVV---------------------------FAKLKTLDLSSNKLAF 205
Query: 336 LPENLFESLKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSWNQLEQINL-IAFDGLSSL 393
+ F+S + ++L+NN+L I +L L DL N L F +
Sbjct: 206 MGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264
Query: 394 NTVDLSHN 401
TV
Sbjct: 265 QTVAKQTV 272
Score = 121 bits (306), Expect = 1e-30
Identities = 46/334 (13%), Positives = 97/334 (29%), Gaps = 86/334 (25%)
Query: 191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQV 250
I N + ++ +++ + + ++ + N A L++
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 251 IKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310
+ +S + L E +L L T+ L + + EL
Sbjct: 63 LNLSSNV--LYETLD--LESLSTLRTLDLNNNYVQELLV--------------------- 97
Query: 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSG 368
+ L N + + + + K +Y L NN++ + L S
Sbjct: 98 ---------GPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSR 145
Query: 369 LNSLDLSWNQLEQINLIAFDG-LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
+ LDL N+++ +N +L ++L +N + L+T++LS
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY------DVKGQVVFAKLKTLDLS 199
Query: 428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL 487
N+++ + S + + LR+N I L + L
Sbjct: 200 SNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQN----------------LEHF 242
Query: 488 EIKAAAQDPNEDSTMVARSANIVILNDNPIACNC 521
+ L N C
Sbjct: 243 D-----------------------LRGNGFHCGT 253
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 152 bits (386), Expect = 4e-41
Identities = 69/356 (19%), Positives = 151/356 (42%), Gaps = 34/356 (9%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
+ L+ S+T++ + + + + L + VA + + LT+L LNL+ NQ
Sbjct: 22 AEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQ 77
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
+ +++ +N+ L +L I N I+ + + +L L+ Y N + A +
Sbjct: 78 ITDIS--PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANL 131
Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
+ + + + S L +N+ LN + + ES + ++ N T++ ++ L
Sbjct: 132 TKMYSLNLGA--NHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL-N 185
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
+ ++ + L N++ + ++ L +L + NN++ +++ L
Sbjct: 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLAN 241
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425
LS L L++ NQ+ IN A L+ L +++ N ++ S L L ++
Sbjct: 242 LSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQIS------DISVLNNLSQLNSLF 293
Query: 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP--DQLDSIVSNKLTLDLSFNQI 479
L+ N++ + + I +T+L L L N+ + I L + + D + I
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMD----SADFANQVI 345
Score = 146 bits (372), Expect = 4e-39
Identities = 78/346 (22%), Positives = 157/346 (45%), Gaps = 29/346 (8%)
Query: 87 SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVF 146
V + L + ++++ K + + + LE LNL GN IT++
Sbjct: 30 QKASVTDVVTQEELESITKLVVAGEK-VASI--QGIEYLTNLEYLNLNGNQITDISP--L 84
Query: 147 QYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206
+ KL L +G+N + D +NLT+LR L L+ + + +++ N+ + SL++
Sbjct: 85 SNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLG 140
Query: 207 GNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG 266
N+ S S++ L ++ + A + L + ++Y++ ++++
Sbjct: 141 ANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ--IEDISP- 194
Query: 267 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 326
A+L L+ + I ++ N T + ++ + G+ K+T L + +L L
Sbjct: 195 -LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI-GNNKITDLSP--LANLSQLTWL 248
Query: 327 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIA 386
E+ N++ + + L +L LN+ +NQ+ +I+ L LS LNSL L+ NQL ++
Sbjct: 249 EIGTNQISDINA--VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEV 306
Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432
GL++L T+ LS N +T PL +++ + + I
Sbjct: 307 IGGLTNLTTLFLSQNHIT------DIRPLASLSKMDSADFANQVIK 346
Score = 139 bits (353), Expect = 1e-36
Identities = 75/362 (20%), Positives = 149/362 (41%), Gaps = 58/362 (16%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
+L I +++ + + L V D + L S+ L + ++
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVT--DVVTQEELESITKLVVAGEKVA 57
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
++ + NL L+++GN I+ + S+L KL Y +N+
Sbjct: 58 SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK-------------- 99
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 307
+ ++ + NL L + L E +I+++ N T + ++ L G
Sbjct: 100 ------------ITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL-GAN 142
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLS 367
S S L + L L + +K+K + +L +LY+L+L NQ+E+I+ L L+
Sbjct: 143 HNLSDLSPLS-NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLT 199
Query: 368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
L+ NQ+ ++ ++ LN++ + +N +T SPL L + +
Sbjct: 200 SLHYFTAYVNQIT--DITPVANMTRLNSLKIGNNKIT------DLSPLANLSQLTWLEIG 251
Query: 428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIP--DQLDSIVSNKLTLDLSFNQIAIVDLR 485
N+IS + + + +T LK L++ N S I + L + +L L+ NQ+ D+
Sbjct: 252 TNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLN----SLFLNNNQLGNEDME 305
Query: 486 TL 487
+
Sbjct: 306 VI 307
Score = 125 bits (316), Expect = 1e-31
Identities = 63/289 (21%), Positives = 123/289 (42%), Gaps = 21/289 (7%)
Query: 93 SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152
L + ++ + NK IT + + L L L ++I+++ + K+
Sbjct: 80 DISPLSNLVKLTNLYIGTNK-ITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKM 134
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
L+LG+N D N+T L L + +++ ++T N+ +L SL ++ N I
Sbjct: 135 YSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIED 191
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
+ + L L F A N+ A M L +KI +K + +L ANL
Sbjct: 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK--ITDLSP--LANLS 243
Query: 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 332
L + +G + I+++ + + T + + + G +++ + + +L L L N+
Sbjct: 244 QLTWLEIGTNQISDINA--VKDLTKLKMLNV-GSNQISDISV--LNNLSQLNSLFLNNNQ 298
Query: 333 LKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ 381
L + L L TL L N + +I L LS ++S D + +++
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIKK 347
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 154 bits (391), Expect = 9e-40
Identities = 74/471 (15%), Positives = 161/471 (34%), Gaps = 58/471 (12%)
Query: 64 NFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
F+ + + + + ++ P + I N IT + K + +
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSI--KKSSRITLKDTQIGQLSNN-ITFVSKAVMR 204
Query: 124 GTPQLESLNLRGNSITEL------------YSGVFQYVP-------KLQVLDLGSNDVAY 164
+L + + Y+ ++ L +++ +
Sbjct: 205 -LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263
Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFN--------NVPNLRSLDISGNNISIL-PS 215
P K L ++++N+ N+ I+ + + ++ + I NN+
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323
Query: 216 GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN 275
++KL N+ + F L + ++Y + + E+P+ +
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAY--NQITEIPANFCGFTEQVE 380
Query: 276 TVILGESSIAELPSDLF-WNSTNITNIVLTG-------HKKLTSLPSTLFRDCKKLVKLE 327
+ + + +P+ + + ++ I + K L T F+ + +
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK-GINVSSIN 439
Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENI---------TSLVGLSGLNSLDLSWNQ 378
L N++ P+ LF + L ++NL N L I + L S+DL +N+
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499
Query: 379 LEQI-NLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
L ++ + L L +DLS+N + F S LK + NR +
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559
Query: 437 DWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL 487
+ I+ SL +L + N+ + + I N LD+ N +DL +
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNE---KITPNISVLDIKDNPNISIDLSYV 607
Score = 139 bits (353), Expect = 7e-35
Identities = 57/392 (14%), Positives = 130/392 (33%), Gaps = 54/392 (13%)
Query: 94 PPYFDGLHFVKHILLSHNKEITGLHKDIFKGT--------PQLESLNLRGNSITEL-YSG 144
P + L ++ I ++ N+ + +++ + + N++
Sbjct: 266 PTFLKALPEMQLINVACNR-GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324
Query: 145 VFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD 204
Q + KL +L+ N + P + L LNL +NQ+ + + +L
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLPAFG-SEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383
Query: 205 ISGNNISILPSGVF-SDLRKLQTFYANSNRFQMFPKDLFAEM-------KYLQVIKISYH 256
+ N + +P+ + + + N F + + I +S +
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Query: 257 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 316
+ + + P LF+ L+++ L + + E+P + +
Sbjct: 444 Q--ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL------------------KDENEN 483
Query: 317 FRDCKKLVKLELQRNKLKYLPENL-FESLKELYTLNLKNNQLE-------NITSLVGLSG 368
F++ L ++L+ NKL L ++ +L L ++L N N ++L G
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543
Query: 369 LNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSY 428
N D N+ + SL + + N + K N+ +++
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-------KVNEKITPNISVLDIKD 596
Query: 429 NRISSLFDDWISSMTSLKELDLRHNNFSFIPD 460
N S+ ++ L ++ I
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628
Score = 137 bits (348), Expect = 3e-34
Identities = 73/393 (18%), Positives = 138/393 (35%), Gaps = 47/393 (11%)
Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSG-----VFQYVPKLQVLDLGSND 161
K K P+ + +L + I + K + SN+
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194
Query: 162 VAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDL 221
+ ++ + LT LR + ++ + N + +L
Sbjct: 195 ITFVSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLK-WDNL 248
Query: 222 RKLQTFY-ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG 280
+ L N P L + +Q+I ++ ++ E + L
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAP----- 302
Query: 281 ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-STLFRDCKKLVKLELQRNKLKYLPEN 339
I I + G+ L + P T + KKL LE N+L+
Sbjct: 303 -------------VGEKIQIIYI-GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348
Query: 340 LFESLKELYTLNLKNNQLENI-TSLVG-LSGLNSLDLSWNQLEQI-NLIAFDGLSSLNTV 396
F S +L +LNL NQ+ I + G + +L + N+L+ I N+ +S ++ +
Sbjct: 349 -FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407
Query: 397 DLSHNLLT-FDEYQYGYSP--LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN 453
D S+N + D + + +N+ +INLS N+IS + S+ + L ++L N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467
Query: 454 NFSFIPDQLDSIVSNKL-------TLDLSFNQI 479
+ IP + ++DL FN++
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500
Score = 133 bits (337), Expect = 8e-33
Identities = 49/362 (13%), Positives = 119/362 (32%), Gaps = 38/362 (10%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD----PEIFKNLTSLRILNLD 182
++ L+L G + + +L+VL LGS+ + P+ S
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 183 HNQLIN--LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKD 240
+ + +L I+ + K SN K
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201
Query: 241 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300
+ + L+ + + + + + + N ++T+
Sbjct: 202 VM-RLTKLRQFYMGNSPFVAENICE-------AWENENSEYAQQYKTEDLKWDNLKDLTD 253
Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
+ + LT LP+ L ++ + + N+ + + + +
Sbjct: 254 VEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQL--------------KDDWQAL 298
Query: 361 TSLVGLSGLNSLDLSWNQLEQINL-IAFDGLSSLNTVDLSHNLLTFDEYQYGYSP-LKQC 418
+ + + +N L+ + + + L ++ +N L G P
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE------GKLPAFGSE 352
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT-LDLSFN 477
+ L ++NL+YN+I+ + ++ ++ L HN +IP+ D+ + ++ +D S+N
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412
Query: 478 QI 479
+I
Sbjct: 413 EI 414
Score = 125 bits (315), Expect = 4e-30
Identities = 57/322 (17%), Positives = 127/322 (39%), Gaps = 33/322 (10%)
Query: 94 PPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ 153
+ + + +N+ + G +L SLNL N ITE+ + + +++
Sbjct: 323 ETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEI-KLASLNLAYNQITEIPANFCGFTEQVE 380
Query: 154 VLDLGSNDVAYMDPEIF-KNLTSLRILNLDHNQLINLTRAIFNNVP-------NLRSLDI 205
L N + Y+ K+++ + ++ +N++ ++ F+ + N+ S+++
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440
Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL-------FAEMKYLQVIKISYHKD 258
S N IS P +FS L + N PK+ F L I + ++K
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK- 499
Query: 259 SLKELPSGL-FANLPLLNTVILGESSIAELPSDLFWNSTNIT------NIVLTGHKKLTS 311
L +L LP L + L +S ++ P+ NS+ + G++ L
Sbjct: 500 -LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLKGFGIRNQRDAQGNRTLRE 557
Query: 312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE--NITSLVGLSGL 369
P + C L +L++ N ++ + E + ++ L++K+N +++ +
Sbjct: 558 WPEGITL-CPSLTQLQIGSNDIRKVNEKITPNIS---VLDIKDNPNISIDLSYVCPYIEA 613
Query: 370 NSLDLSWNQLEQINLIAFDGLS 391
L +++ + I +
Sbjct: 614 GMYMLFYDKTQDIRGCDALDIK 635
Score = 107 bits (268), Expect = 3e-24
Identities = 45/295 (15%), Positives = 107/295 (36%), Gaps = 28/295 (9%)
Query: 93 SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVF-QYVPK 151
P F + + L++N+ IT + + T Q+E+L+ N + + + + V
Sbjct: 345 KLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403
Query: 152 LQVLDLGSNDVAYMDPEIFK-------NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD 204
+ +D N++ +D + F ++ +NL +NQ+ + +F+ L S++
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463
Query: 205 ISGNNISILPSGV-------FSDLRKLQTFYANSNRFQMFPKDL-FAEMKYLQVIKISYH 256
+ GN ++ +P F + L + N+ D + YL I +SY+
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523
Query: 257 KDSLKELPSGLF-----ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS 311
+ P+ + N + + ++T + + G +
Sbjct: 524 S--FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI-GSNDIRK 580
Query: 312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
+ + + L+++ N + + E L ++ ++I L
Sbjct: 581 VNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632
Score = 106 bits (267), Expect = 3e-24
Identities = 38/324 (11%), Positives = 93/324 (28%), Gaps = 29/324 (8%)
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVF----SDLRKLQTF 227
+ + L+L+ + L L + + + S +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
+Q D + +IK + D ++ + ++I +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198
Query: 288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL 347
+ T + + G+ + + + + K +++LK+L
Sbjct: 199 SKAVM-RLTKLRQFYM-GNSPFVAENICEAWENENSEYA----QQYKTEDLK-WDNLKDL 251
Query: 348 YTLNL-KNNQLENI-TSLVGLSGLNSLDLSWNQLEQI--------NLIAFDGLSSLNTVD 397
+ + L + T L L + ++++ N+ L + +
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311
Query: 398 LSHNLLTFDEYQYGYSP--LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
+ +N L L++ L + YN++ S L L+L +N
Sbjct: 312 IGYNNLK-----TFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQI 365
Query: 456 SFIPDQLDSIVSNKLTLDLSFNQI 479
+ IP L + N++
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKL 389
Score = 84.3 bits (209), Expect = 5e-17
Identities = 27/294 (9%), Positives = 83/294 (28%), Gaps = 61/294 (20%)
Query: 194 FNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
N+ + L + G S L +L+ S+ K+
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE-----------------KV 119
Query: 254 SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 313
+ K + + + + ++ + P + +++ + + S+
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR---EDFSDLIKDCINSDPQQKSIK 176
Query: 314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLD 373
R K ++ N + ++ + + L +L + N+ + + +
Sbjct: 177 K-SSRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPF---VAENICEAWENEN 231
Query: 374 LSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
+ Q T DL + L +L + + +
Sbjct: 232 SEYAQQ-------------YKTEDLKWDNLK---------------DLTDVEVYNCPNLT 263
Query: 434 LFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS-------NKLT-LDLSFNQI 479
++ ++ ++ +++ N D + K+ + + +N +
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317
Score = 82.4 bits (204), Expect = 2e-16
Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 82 FSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGT-PQLESLNLRGNSITE 140
+ P N F + + I L NK +T L D T P L ++L NS ++
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSK 527
Query: 141 LYSGVFQYVPKLQVLDLGSNDVAY------MDPEIFKNLTSLRILNLDHNQLINLTRAIF 194
+ L+ + + A PE SL L + N + + I
Sbjct: 528 FPTQPLN-SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586
Query: 195 NNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
PN+ LDI N + + + ++ Q ++K
Sbjct: 587 ---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635
Score = 34.6 bits (80), Expect = 0.12
Identities = 14/119 (11%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 375 SWNQLEQINL------IAFDGLSSLNTVDLSHNLLTFDEYQYGYSP--LKQCVNLETINL 426
+WN +++++ ++ + + + L + G P + Q LE + L
Sbjct: 59 NWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGAS------GRVPDAIGQLTELEVLAL 112
Query: 427 SYNRISSLFDDW----ISSMTSLKELDLRHNNF--SFIPDQLDSIVSNKLTLDLSFNQI 479
+ + IS+ S ++ ++ +F+ S+ + ++ +
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 145 bits (368), Expect = 1e-38
Identities = 53/271 (19%), Positives = 103/271 (38%), Gaps = 34/271 (12%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND-VAYMDPE 168
++T + D+ + L + + G F L+ +++ ND + ++ +
Sbjct: 17 QESKVTEIPSDLPRNA---IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73
Query: 169 IFKNLTSLRILNLDH-NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
+F NL L + ++ N L+ + F N+PNL+ L IS I LP +
Sbjct: 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP-LLNTVILGESSIAE 286
N ++ + F L + L ++ I E
Sbjct: 134 DIQDN-------------------------INIHTIERNSFVGLSFESVILWLNKNGIQE 168
Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346
+ + F N T + + L+ + L LP+ +F V L++ R ++ LP E+LK+
Sbjct: 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227
Query: 347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWN 377
L + L+ + +L L L L++
Sbjct: 228 LRARST--YNLKKLPTLEKLVALMEASLTYP 256
Score = 139 bits (352), Expect = 1e-36
Identities = 55/298 (18%), Positives = 108/298 (36%), Gaps = 42/298 (14%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI-S 211
+V + V + ++ +N L +L + + F+ +L ++IS N++
Sbjct: 12 RVFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 212 ILPSGVFSDLRKLQTFY-ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
++ + VFS+L KL +N L + F N
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANN--------------------------LLYINPEAFQN 102
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC-KKLVKLELQ 329
LP L +++ + I LP +S + + + + ++ F + V L L
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162
Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAF 387
+N ++ + + F + NN LE + G SG LD+S ++ +
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSL 445
+ L L +NL L++ V L +L+Y F +W ++ L
Sbjct: 223 ENLKKLRARST-YNLKKLP-------TLEKLVALMEASLTYPSHCCAFANWRRQISEL 272
Score = 118 bits (298), Expect = 3e-29
Identities = 47/252 (18%), Positives = 97/252 (38%), Gaps = 14/252 (5%)
Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI 284
+ F ++ P DL L+ L+ + G F+ L + + ++ +
Sbjct: 12 RVFLCQESKVTEIPSDLPRNAIELRF-----VLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 285 AE-LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
E + +D+F N + I + L + F++ L L + +K+LP+
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126
Query: 344 LKELYTLNLK-NNQLENI--TSLVGLSG-LNSLDLSWNQLEQINLIAFDGLSSLNTVDLS 399
+ L+++ N + I S VGLS L L+ N +++I+ AF+G
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186
Query: 400 HNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
+N L + +++S RI SL + ++ L+ +
Sbjct: 187 NNNLE----ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 242
Query: 460 DQLDSIVSNKLT 471
++L +++ LT
Sbjct: 243 EKLVALMEASLT 254
Score = 116 bits (291), Expect = 2e-28
Identities = 43/223 (19%), Positives = 75/223 (33%), Gaps = 18/223 (8%)
Query: 69 FSKLNITTINTLAFSNSPS----------NVGVLSPPYFDGLHFVKHILLSHNKEITGLH 118
F + I AFS + V+ F L + I + + ++
Sbjct: 37 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96
Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND-VAYMDPEIFKNLTS-L 176
+ F+ P L+ L + I L + + +LD+ N + ++ F L+
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156
Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
IL L+ N + + + FN NN+ LP+ VF + R
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216
Query: 237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
P +K L+ +LK+LP+ L L L
Sbjct: 217 LPSYGLENLKKLRARSTY----NLKKLPT--LEKLVALMEASL 253
Score = 74.5 bits (183), Expect = 2e-14
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 19/154 (12%)
Query: 55 FTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEI 114
+ + + +NI TI +F +L L+ N I
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW--------------LNKNG-I 166
Query: 115 TGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLT 174
+H F GT E N++ EL + VF +LD+ + + +NL
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
LR + + + + + L ++
Sbjct: 227 KLRARSTYNLKKLP----TLEKLVALMEASLTYP 256
Score = 69.9 bits (171), Expect = 5e-13
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 33/155 (21%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQ-LEQI 382
Q +K+ +P +L + EL +L I G L +++S N LE I
Sbjct: 14 FLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 383 NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSM 442
F L L+ + + N + + + ++
Sbjct: 71 EADVFSNLPKLHEIRIEKA---------------------------NNLLYINPEAFQNL 103
Query: 443 TSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN 477
+L+ L + + +PD K+ LD+ N
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138
Score = 37.9 bits (88), Expect = 0.010
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 574 CPAR-CYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLES 632
C R C+C S C + +T +P LP +I+L + +
Sbjct: 2 CHHRICHC------SNRVFLCQESKVTEIPSDLP-------RNAIELRFVLTKLRVIQKG 48
Query: 633 PPESYKLITDLDLSYNNISHV 653
+ + +++S N++ V
Sbjct: 49 AFSGFGDLEKIEISQNDVLEV 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 139 bits (353), Expect = 2e-37
Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 29/231 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
++L+L N + L S F P+LQVLDL ++ ++ +++L+ L L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
+L F+ + +L+ L N++ L + L+ L+ N Q F
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP------- 142
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT--- 304
F+NL L + L + I + + + L+
Sbjct: 143 ------------------EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
+ + F +L +L L N+LK +P+ +F+ L L + L N
Sbjct: 185 SLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 122 bits (307), Expect = 4e-31
Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 18/235 (7%)
Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
T+ F P +L K L + + L+ L S F + P L + L I
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDL-----SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLK 345
+ + + ++++ ++LTG + SL F L KL L L LK
Sbjct: 66 TIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124
Query: 346 ELYTLNLKNNQLENITS---LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV----DL 398
L LN+ +N +++ L+ L LDLS N+++ I L + + DL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN 453
S N + F + + + L+ + L N++ S+ D +TSL+++ L N
Sbjct: 185 SLNPMNFIQ-----PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 107 bits (270), Expect = 4e-26
Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 42/250 (16%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
+P L K L +L N L++L F S EL L+L +++ I
Sbjct: 17 LNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLET 423
LS L++L L+ N ++ + L AF GLSSL + L + + P+ L+
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKE 128
Query: 424 INLSYNRISSL-FDDWISSMTSLKELDLRHNNFSFIP----DQLDSIVSNKLTLDLSFNQ 478
+N+++N I S ++ S++T+L+ LDL N I L + L+LDLS N
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 479 IAIVD--------LRTLE--------IKAAAQDPNEDSTMVARSANIVILNDNPIACNCS 522
+ + L+ L + D S + L+ NP C+C
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT-------SLQKIWLHTNPWDCSCP 241
Query: 523 NYDLIRFVSK 532
I ++S+
Sbjct: 242 R---IDYLSR 248
Score = 68.5 bits (168), Expect = 7e-13
Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 33/153 (21%)
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIA 386
+P+NL S K L L N L ++ S L LDLS +++ I A
Sbjct: 15 MELNFYKIPDNLPFSTKNLD---LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
+ L +L T+ L+ N I SL S ++SL+
Sbjct: 72 YQSL----------------------------SHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Query: 447 ELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
+L N + + + + L+++ N I
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Score = 61.9 bits (151), Expect = 1e-10
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 30/120 (25%)
Query: 93 SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152
P YF L LE L+L N I +Y + + ++
Sbjct: 141 LPEYFSNLT-------------------------NLEHLDLSSNKIQSIYCTDLRVLHQM 175
Query: 153 QV----LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
+ LDL N + ++ P FK + L+ L LD NQL ++ IF+ + +L+ + + N
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 38.8 bits (91), Expect = 0.003
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 13/77 (16%)
Query: 575 PARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPP 634
P + C + +PD LP ++ L L N + H
Sbjct: 2 PCVEVVPNI------TYQCMELNFYKIPDNLP-------FSTKNLDLSFNPLRHLGSYSF 48
Query: 635 ESYKLITDLDLSYNNIS 651
S+ + LDLS I
Sbjct: 49 FSFPELQVLDLSRCEIQ 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 144 bits (365), Expect = 1e-36
Identities = 81/398 (20%), Positives = 157/398 (39%), Gaps = 51/398 (12%)
Query: 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
P+ ++L+L NSI+EL ++ +L+VL L N + +D +F L L++ HN
Sbjct: 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110
Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISILP-SGVFSDLRKLQTFYANSNRFQMFPKDLFA 243
+L N++ + +LR LD+S N+ +LP F +L KL ++ +F+ A
Sbjct: 111 RLQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167
Query: 244 EMKYLQVIKISYHKDSLKELPSGLFANLPL----------------------------LN 275
+ L I + +K + L+
Sbjct: 168 HLH-LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226
Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL----FRDCKKLVKLELQRN 331
+ L + + L + L + T + +T T+ ++ F + + L +
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286
Query: 332 KLKYLPE-----NLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINL 384
+ + +LK L ++KN + + +N LS + I++
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346
Query: 385 IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD--DWISSM 442
+ SS ++ + N+ T D G S L L+T+ L N + + F +M
Sbjct: 347 VCPPSPSSFTFLNFTQNVFT-DSVFQGCSTL---KRLQTLILQRNGLKNFFKVALMTKNM 402
Query: 443 TSLKELDLRHNNFSFIP-DQLDSIVSNKLTLDLSFNQI 479
+SL+ LD+ N+ + D+ + + L L+LS N +
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440
Score = 108 bits (272), Expect = 6e-25
Identities = 73/437 (16%), Positives = 136/437 (31%), Gaps = 81/437 (18%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGN-----------SITE 140
L P L ++ + LSHN+ I L +F LE L++ N S+
Sbjct: 67 LRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRH 125
Query: 141 LY-----------SGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL-TSLRILNLDHNQLIN 188
L F + KL L L + +D +L S +L+L +
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLF------ 242
N L + + S+ V + L ++ +
Sbjct: 186 GETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244
Query: 243 -------------------------------AEMKYLQVIKISYHKDSLKELPSGLFANL 271
++YL + ++ + +E + L
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304
Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
L + L+ + +L+ + L +N
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQN 363
Query: 332 KLKYLPENLFESLKELYTLNLKNNQLENITSLVG-LSGLNSLDLSWNQLEQINLIAFDGL 390
+LK L TL L+ N L+N + ++SL+ L +N A+D
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423
Query: 391 ----SSLNTVDLSHNLLT---FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
S+ ++LS N+LT F ++ ++L NRI S+ ++ +
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFR---------CLPPKVKVLDLHNNRIMSI-PKDVTHLQ 473
Query: 444 SLKELDLRHNNFSFIPD 460
+L+EL++ N +PD
Sbjct: 474 ALQELNVASNQLKSVPD 490
Score = 99.2 bits (247), Expect = 6e-22
Identities = 43/350 (12%), Positives = 113/350 (32%), Gaps = 22/350 (6%)
Query: 69 FSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVK-HILLSHNKEITGLHKDIFKGTPQ 127
+ ++ + ++ + H++ N +
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222
Query: 128 LE--SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
L+ ++ L + L + + + +L++ + K +++
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282
Query: 186 LINLT----------RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
+ NLT + +L + ++S ++ + +
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342
Query: 236 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP--SDLFW 293
+ + + + + L L T+IL + + + +
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNV--FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL-KELYTLNL 352
N +++ + ++ + + + ++ L L N L ++F L ++ L+L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML---TGSVFRCLPPKVKVLDL 457
Query: 353 KNNQLENITSLV-GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
NN++ +I V L L L+++ NQL+ + FD L+SL + L N
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 70.3 bits (172), Expect = 9e-13
Identities = 28/195 (14%), Positives = 70/195 (35%), Gaps = 33/195 (16%)
Query: 67 SLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTP 126
+L+S I L+ S++P + + + N T
Sbjct: 323 ALYSVFAEMNIKMLSISDTPF----IHMVCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLK 377
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTS----------- 175
+L++L L+ N + V + L+ + ++ + +
Sbjct: 378 RLQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436
Query: 176 ---------------LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSD 220
+++L+L +N+++++ + ++ L+ L+++ N + +P GVF
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDR 495
Query: 221 LRKLQTFYANSNRFQ 235
L LQ + + N +
Sbjct: 496 LTSLQYIWLHDNPWD 510
Score = 34.1 bits (78), Expect = 0.17
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 590 SVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNN 649
V+ S+ +LTH+P LP + L L NSI+ + L LS+N
Sbjct: 35 MVDYSNRNLTHVPKDLP-------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87
Query: 650 ISHVD 654
I +D
Sbjct: 88 IRSLD 92
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 140 bits (355), Expect = 7e-36
Identities = 73/373 (19%), Positives = 145/373 (38%), Gaps = 36/373 (9%)
Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
++ + I + D + L ++T+ S + ++ L +
Sbjct: 7 TITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--S 60
Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
+ + L +L +N +NQL ++T N+ L + ++ N I+ + ++L L
Sbjct: 61 IDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTG 116
Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286
+N+ + L +++S + + ++ + + L L + G
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNT--ISDISA--LSGLTSLQQLSFGNQVTDL 170
Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346
P N T + + + K++ + L L N++ + L
Sbjct: 171 KP---LANLTTLERLDI-SSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTN 222
Query: 347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
L L+L NQL++I +L L+ L LDL+ NQ+ NL GL+ L + L N ++
Sbjct: 223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--NLAPLSGLTKLTELKLGANQIS-- 278
Query: 407 EYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIV 466
SPL L + L+ N++ + IS++ +L L L NN S I S +
Sbjct: 279 ----NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSL 330
Query: 467 SNKLTLDLSFNQI 479
+ L N++
Sbjct: 331 TKLQRLFFYNNKV 343
Score = 140 bits (354), Expect = 1e-35
Identities = 76/388 (19%), Positives = 155/388 (39%), Gaps = 35/388 (9%)
Query: 95 PYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154
L + IL+++N+ I + L L L N IT++ + + L
Sbjct: 84 TPLKNLTKLVDILMNNNQ-IADI--TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 138
Query: 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILP 214
L+L SN ++ D LTSL+ L+ + N+ L LDIS N +S +
Sbjct: 139 LELSSNTIS--DISALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDIS 193
Query: 215 SGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLL 274
+ L L++ A +N+ + L + ++ ++ LK++ + A+L L
Sbjct: 194 V--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ--LKDIGT--LASLTNL 245
Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
+ L + I+ L T +T + L G +++++ L LEL N+L+
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKL-GANQISNISP--LAGLTALTNLELNENQLE 300
Query: 335 YLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN 394
+ +LK L L L N + +I+ + L+ L L N++ ++ + L+++N
Sbjct: 301 DISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS--SLANLTNIN 356
Query: 395 TVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
+ HN ++ +PL + + L+ ++ + + S+
Sbjct: 357 WLSAGHNQIS------DLTPLANLTRITQLGLNDQAWTNAPVN-YKANVSIPNTVKNVTG 409
Query: 455 FSFIPDQLDSIVSNKLTLDLSFNQIAIV 482
P + S + D+++N +
Sbjct: 410 ALIAPATI-SDGGSYTEPDITWNLPSYT 436
Score = 123 bits (312), Expect = 2e-30
Identities = 68/364 (18%), Positives = 139/364 (38%), Gaps = 32/364 (8%)
Query: 93 SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152
L + + LS N I+ + G L+ L+ GN +T+L + L
Sbjct: 126 DIDPLKNLTNLNRLELSSNT-ISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTL 179
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
+ LD+ SN V+ D + LT+L L +NQ+ ++T + NL L ++GN +
Sbjct: 180 ERLDISSNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD 235
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
+ + + L L +N+ + + L +K+ ++ + + A L
Sbjct: 236 IGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ--ISNISP--LAGLT 287
Query: 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 332
L + L E+ + ++ N N+T + L ++ + KL +L NK
Sbjct: 288 ALTNLELNENQLEDISP--ISNLKNLTYLTL-YFNNISDISP--VSSLTKLQRLFFYNNK 342
Query: 333 LKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
+ + +L + L+ +NQ+ ++T L L+ + L L+ + +S
Sbjct: 343 VSDVSS--LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSI 400
Query: 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452
NTV L + + ++++N S ++ + + +
Sbjct: 401 PNTVKNVTGALIAPA------TISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGT 453
Query: 453 NNFS 456
FS
Sbjct: 454 TTFS 457
Score = 93.5 bits (233), Expect = 3e-20
Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 22/213 (10%)
Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
PL + I ++ I ++ +D VL G +T S D ++ L+ R
Sbjct: 2 PLGSATITQDTPINQIFTDT--ALAEKMKTVL-GKTNVTDTVS--QTDLDQVTTLQADRL 56
Query: 332 KLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLS 391
+K + E L L +N NNQL +IT L L+ L + ++ NQ+ ++ L+
Sbjct: 57 GIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLT 112
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
+L + L +N +T PLK NL + LS N IS + +S +TSL++L
Sbjct: 113 NLTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG 164
Query: 452 HNNFSFIP-DQLDSIVSNKLTLDLSFNQIAIVD 483
+ P L ++ LD+S N+++ +
Sbjct: 165 NQVTDLKPLANLTTLER----LDISSNKVSDIS 193
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 138 bits (350), Expect = 5e-35
Identities = 76/396 (19%), Positives = 155/396 (39%), Gaps = 51/396 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
LN+ N I+EL++ + KL++L + N + Y+D +FK L L+L HN+L+
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILP-SGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
++ + NL+ LD+S N LP F ++ +L+ ++ + A +
Sbjct: 83 KIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 247 YLQVIKISYHKDSLKELPSGL-----------------FANLPLLNTVILGESSIAELPS 289
+V+ + KE P GL F + ++ + ++ +
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199
Query: 290 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK----------------KLVKLELQRNKL 333
L N + +L + L + + + + + KL
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259
Query: 334 KYLP-----ENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIA 386
+ + SLK L + ++ S + S +N + + + ++++
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319
Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD--DWISSMTS 444
+S +D S+NLLT ++ LET+ L N++ L + + M S
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375
Query: 445 LKELDLRHNNFSFIPDQLDSIVSNKLT-LDLSFNQI 479
L++LD+ N+ S+ + D + L L++S N +
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411
Score = 138 bits (349), Expect = 7e-35
Identities = 73/414 (17%), Positives = 140/414 (33%), Gaps = 50/414 (12%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
+S N I+ L +L L + N I L VF++ +L+ LDL N + +
Sbjct: 28 ISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS- 85
Query: 168 EIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
+L+ L+L N L F N+ L+ L +S ++ + L +
Sbjct: 86 --CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143
Query: 227 F-YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN----TVILGE 281
+ + + + + + + L +L +
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203
Query: 282 SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL----FRDCKKLVKLELQRNKLKYLP 337
+ + S L TN LT + T+ S + + + KL+
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263
Query: 338 -----ENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGL 390
+ SLK L + ++ S + S +N + + + ++++ +
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323
Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD--DWISSMTSLKEL 448
S +D S+NLLT ++ LET+ L N++ L + + M SL++L
Sbjct: 324 SPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379
Query: 449 DLRHNNFSFIPD------------------QLDSIVSNKLT-----LDLSFNQI 479
D+ N+ S+ L + L LDL N+I
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI 433
Score = 127 bits (321), Expect = 3e-31
Identities = 74/401 (18%), Positives = 134/401 (33%), Gaps = 28/401 (6%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV-L 155
+KH+ LS N F QL+ L L + + ++ +V L
Sbjct: 86 CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145
Query: 156 DLGSNDVAYMDPEIFKNL--TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISIL 213
LG DPE ++ SL I+ + + + V NL +I
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205
Query: 214 PSGVFSDLRKLQTFYANSN----RFQMFPKDLFA--------EMKYLQVIKISYHKDSLK 261
S S L KLQT SN + + Y + +
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265
Query: 262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 321
+L L+ + S ++ +N+ T +
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-TRMVHMLCPSKIS 324
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG----LSGLNSLDLSWN 377
+ L+ N L L EL TL L+ NQL+ ++ + + L LD+S N
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384
Query: 378 QLEQI-NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
+ SL ++++S N+LT ++ ++L N+I S+
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDT------IFRCLPPRIKVLDLHSNKIKSI-P 437
Query: 437 DWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN 477
+ + +L+EL++ N +PD + +++ + L N
Sbjct: 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 116 bits (291), Expect = 2e-27
Identities = 53/392 (13%), Positives = 130/392 (33%), Gaps = 51/392 (13%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
++ N + + + K +L++ N ++ + +L+ LRIL + HN++ L
Sbjct: 4 LVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60
Query: 190 TRAIFNNVPNLRSLDISGNNISILPS----------------------GVFSDLRKLQTF 227
++F L LD+S N + + F ++ +L+
Sbjct: 61 DISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
++ + A + +V+ + KE P + + I+ + E
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP-EGLQDFNTESLHIV-FPTNKEF 178
Query: 288 PSDLFWNSTNITNIVLTGHKKL------TSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 341
L + + N+ L+ K + + S L + L N ++ +
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238
Query: 342 ESLKELYTLNLKNNQLENIT------------SLVGLSGLNSLDLSWNQLEQINLIAFDG 389
L+ ++ + + N+ S L L+ + + ++
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298
Query: 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELD 449
S++N + + + + ++ S N ++ + +T L+ L
Sbjct: 299 FSNMNIKNFTVSGTRM----VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 450 LRHNNFSFIPDQLDSI--VSNKLTLDLSFNQI 479
L+ N + + + + LD+S N +
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
Score = 105 bits (263), Expect = 5e-24
Identities = 48/300 (16%), Positives = 109/300 (36%), Gaps = 22/300 (7%)
Query: 60 LPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHK 119
L D S L N + + +N+ + L V H + +
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF-------- 252
Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
+ ++ L+G + + L + + S+ + I++ +++ I
Sbjct: 253 -------SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
N + + + + LD S N ++ L +L+T N+ + K
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365
Query: 240 --DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 297
++ +MK LQ + IS + S + G + L ++ + + + +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVS-YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK 424
Query: 298 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
+ ++ K+ S+P + + + L +L + N+LK +P+ +F+ L L + L N
Sbjct: 425 VLDL---HSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 105 bits (263), Expect = 5e-24
Identities = 57/403 (14%), Positives = 125/403 (31%), Gaps = 70/403 (17%)
Query: 69 FSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVK-HILLSHNKEITGLHKDIFKGTPQ 127
+ I+ + + P + HI+ NKE + K
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191
Query: 128 LESLNLRGNSITELYSGVFQYVPKL----QVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
LE N++ S + KL ++ +L N++ + L + + +
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251
Query: 184 NQLINLT----------RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
+ N+ ++ L + + S ++ + +
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
+M +++ + S + L + +L L T+IL + + EL
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNL--LTDTVFENCGHLTELETLILQMNQLKELSK---- 365
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNL 352
+ + K L +L++ +N + Y + K L +LN+
Sbjct: 366 -------------------IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 353 KNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
+N L + + LDL N+++ I L
Sbjct: 407 SSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK--------------LE-------- 444
Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
L+ +N++ N++ S+ D +TSL+++ L N +
Sbjct: 445 -------ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 81.4 bits (201), Expect = 3e-16
Identities = 36/193 (18%), Positives = 74/193 (38%), Gaps = 31/193 (16%)
Query: 68 LFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQ 127
++ + I S + + + H+ S+N +T + +
Sbjct: 295 IYEIFSNMNIKNFTVSGTRM----VHMLCPSKISPFLHLDFSNNL-LTDTVFENCGHLTE 349
Query: 128 LESLNLRGNSITEL--YSGVFQYVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRILN---- 180
LE+L L+ N + EL + + + LQ LD+ N V+Y + SL LN
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Query: 181 ------------------LDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
L N++ ++ + + + L+ L+++ N + +P G+F L
Sbjct: 410 ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLT 468
Query: 223 KLQTFYANSNRFQ 235
LQ + ++N +
Sbjct: 469 SLQKIWLHTNPWD 481
Score = 79.9 bits (197), Expect = 7e-16
Identities = 70/405 (17%), Positives = 146/405 (36%), Gaps = 46/405 (11%)
Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
V ++ + +P DL S T + ++ ++ L ++ KL L + N+++
Sbjct: 3 FLVDRSKNGLIHVPKDL---SQKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQ 58
Query: 335 YLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIA-FDGLSSL 393
YL ++F+ +EL L+L +N+L I S L LDLS+N + + + F +S L
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKLVKI-SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 394 NTVDLSHN------------------LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
+ LS LL E + + T +L ++
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177
Query: 436 DDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQD 495
+I ++ +L +N + + + L N L L +
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP----KLSNLTLNNIETT 233
Query: 496 PNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLEL--VTDNLECFG 553
N ++ + + + N + F + T + L + V ++ F
Sbjct: 234 WNSFIRILQLVWHTTVWYFS--ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291
Query: 554 NAGV--GINSVRPENLTC-DTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYE 610
+ + +++ +N T T+ C S + ++ S+ LT
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS---PFLHLDFSNNLLTDTVFENC---- 344
Query: 611 DKKATSIQ-LILHNNSINHFLESPPESYKL--ITDLDLSYNNISH 652
T ++ LIL N + + + ++ + LD+S N++S+
Sbjct: 345 -GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Score = 76.8 bits (189), Expect = 6e-15
Identities = 73/503 (14%), Positives = 142/503 (28%), Gaps = 70/503 (13%)
Query: 178 ILNLDHNQLINLTRAIFNNVP-NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
+++ N L + ++ L+IS N IS L + L KL+ + NR Q
Sbjct: 4 LVDRSKNGL----IHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58
Query: 237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 296
L +F L + L + + ++
Sbjct: 59 -------------------------YLDISVFKFNQELEYLDLSHNKLVKISCHPT---V 90
Query: 297 NITNIVLTGHKKLTSLPST-LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
N+ ++ L +LP F + +L L L L+ L L +
Sbjct: 91 NLKHLDL-SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149
Query: 356 QLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYG---- 411
GL N+ L +S +L + +
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209
Query: 412 -YSPLKQCVNLETINLSYNRISSLFDDWIS-----SMTSLKELDLRHNNFSFIPDQLDSI 465
K N + NL+ N I + ++ +I T++ + + D D
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269
Query: 466 VSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYD 525
S LS +Q+ + N + S ++ S +
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV--HMLCPSKISPFL 327
Query: 526 LIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPY 585
+ F + +T TV++ +T LE + + +
Sbjct: 328 HLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEM-------------TTQM 373
Query: 586 YSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDL 645
S+ ++ S S+++ + + L + +N + + I LDL
Sbjct: 374 KSLQQLDISQNSVSYDE---KKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDL 428
Query: 646 SYNNISHVDTMY---PYLNHLEL 665
N I + L L +
Sbjct: 429 HSNKIKSIPKQVVKLEALQELNV 451
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 135 bits (342), Expect = 2e-34
Identities = 78/354 (22%), Positives = 143/354 (40%), Gaps = 55/354 (15%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
Q L L ++ L + P L+ L N + + PE+ ++L SL + N +
Sbjct: 71 RQAHELELNNLGLSSL----PELPPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKA 125
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
L +L P L L +S N + LP + L+ ++N + P +
Sbjct: 126 LSDLP-------PLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLPPS-- 174
Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
L+ I ++ L+ELP NLP L + +S+ +LP ++ +IV G
Sbjct: 175 --LEFIAAGNNQ--LEELPE--LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVA-G 223
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
+ L LP ++ L + N LK LP + L LN+++N L ++ L
Sbjct: 224 NNILEELPE--LQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLPEL-- 275
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425
L LD+S N ++ + +L ++ S N + S +LE +N
Sbjct: 276 PQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIR--------SLCDLPPSLEELN 323
Query: 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
+S N++ L + L+ L N+ + +P+ ++ L + +N +
Sbjct: 324 VSNNKLIELP----ALPPRLERLIASFNHLAEVPELPQNLKQ----LHVEYNPL 369
Score = 128 bits (325), Expect = 5e-32
Identities = 78/391 (19%), Positives = 150/391 (38%), Gaps = 71/391 (18%)
Query: 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
+ ++ S N +T L + L N ++++L P L+ L + +N +
Sbjct: 94 ESLVASCNS-LTELPELPQSLK-SLLVDNNNLKALSDL-------PPLLEYLGVSNNQLE 144
Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
+ +N + L+I+++D+N L + + + P+L + N + LP +L
Sbjct: 145 KLPE--LQNSSFLKIIDVDNNSL----KKLPDLPPSLEFIAAGNNQLEELPE--LQNLPF 196
Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
L YA++N + P + L+ I + L+ELP NLP L T+ +
Sbjct: 197 LTAIYADNNSLKKLPDLPLS----LESIVAGNNI--LEELPE--LQNLPFLTTIYADNNL 248
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
+ LP ++ + + LT LP + L L++ N L E
Sbjct: 249 LKTLPDLP----PSLEALNV-RDNYLTDLPELP----QSLTFLDVSENIFSGLSE----L 295
Query: 344 LKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
LY LN +N++ ++ L L L++S N+L ++ L + S N L
Sbjct: 296 PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIEL----PALPPRLERLIASFNHL 349
Query: 404 TFDEYQYGYSPLKQCVNLETINLSYNRISSLFD---------------DWISSMTSLKEL 448
+ NL+ +++ YN + D + +LK+L
Sbjct: 350 A--------EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401
Query: 449 DLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
+ N PD +S+ L ++ ++
Sbjct: 402 HVETNPLREFPDIPESVED----LRMNSERV 428
Score = 125 bits (316), Expect = 7e-31
Identities = 69/376 (18%), Positives = 138/376 (36%), Gaps = 57/376 (15%)
Query: 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
+++ +S+N+ + L + + L+ +++ NS+ +L P L+ + G+N +
Sbjct: 134 EYLGVSNNQ-LEKL--PELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLE 186
Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
+ +NL L + D+N L + + + +L S+ N + LP +L
Sbjct: 187 ELPE--LQNLPFLTAIYADNNSL----KKLPDLPLSLESIVAGNNILEELPE--LQNLPF 238
Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
L T YA++N + P L+ + + + L +LP L +L L+ S
Sbjct: 239 LTTIYADNNLLKTLPD----LPPSLEALNVRDNY--LTDLPE-LPQSLTFLDVSENIFSG 291
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
++ELP N+ + + ++ SL L +L + NKL LP
Sbjct: 292 LSELP-------PNLYYLNAS-SNEIRSLCDLP----PSLEELNVSNNKLIELPA----L 335
Query: 344 LKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
L L N L + L L L + +N L + D S+ + ++ +L
Sbjct: 336 PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREF----PDIPESVEDLRMNSHLA 389
Query: 404 TFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD 463
E NL+ +++ N + D S+++L + +
Sbjct: 390 EVPE---------LPQNLKQLHVETNPLREFPD----IPESVEDLRMNSERVVDPYEFAH 436
Query: 464 SIVSNKLTLDLSFNQI 479
+
Sbjct: 437 ETTDKLEDDVFEHHHH 452
Score = 112 bits (283), Expect = 1e-26
Identities = 65/353 (18%), Positives = 119/353 (33%), Gaps = 75/353 (21%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
L+ +++TE+ V ++ P + + L
Sbjct: 12 FLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
L+++ +S LP L++ A+ N
Sbjct: 71 -----------RQAHELELNNLGLSSLPE----LPPHLESLVASCNS------------- 102
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
L ELP +L L ++++LP L + ++ +
Sbjct: 103 -------------LTELPELPQ-SLKSLLVDNNNLKALSDLPPLL-------EYLGVS-N 140
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
+L LP ++ L +++ N LK LP+ L + NNQLE + L L
Sbjct: 141 NQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELPELQNL 194
Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
L ++ N L+++ D SL ++ +N+L L+ L TI
Sbjct: 195 PFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEEL------PELQNLPFLTTIYA 244
Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
N + +L D SL+ L++R N + +P+ S+ LD+S N
Sbjct: 245 DNNLLKTLPD----LPPSLEALNVRDNYLTDLPELPQSLTF----LDVSENIF 289
Score = 75.8 bits (187), Expect = 1e-14
Identities = 52/267 (19%), Positives = 101/267 (37%), Gaps = 41/267 (15%)
Query: 93 SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152
P L F+ I +N + L P LE+LN+R N +T+L L
Sbjct: 229 ELPELQNLPFLTTIYADNNL-LKTLPDLP----PSLEALNVRDNYLTDLPELP----QSL 279
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
LD+ N + + + +L LN N++ R++ + P+L L++S N +
Sbjct: 280 TFLDVSENIFS----GLSELPPNLYYLNASSNEI----RSLCDLPPSLEELNVSNNKLIE 331
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
LP+ +L+ A+ N P + L+ + + Y+ L+E P + ++
Sbjct: 332 LPA----LPPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNP--LREFPD-IPESVE 380
Query: 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 332
L S +AE+P N+ + + L P + L + +
Sbjct: 381 DLRM----NSHLAEVPELP----QNLKQLHV-ETNPLREFPDIPE----SVEDLRMNSER 427
Query: 333 LKYLPENLFESLKELYTLNLKNNQLEN 359
+ E E+ +L +++ +
Sbjct: 428 VVDPYEFAHETTDKLEDDVFEHHHHHH 454
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 135 bits (343), Expect = 3e-33
Identities = 95/370 (25%), Positives = 149/370 (40%), Gaps = 35/370 (9%)
Query: 126 PQLESLNLRGNSITELYSGV---FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
LE L++ N+ S LQ LD+ N ++ T L++LN+
Sbjct: 200 VNLEFLDVSSNNF----STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 183 HNQLINLTRAI-FNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTFYANSNRFQ-MFPK 239
N I + +L+ L ++ N + +P + L + N F P
Sbjct: 256 SN---QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 240 DLFAEMKYLQVIKISYHKDSLK-ELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTN 297
L+ + +S ++ ELP + L + L + + ELP L S +
Sbjct: 313 FFG-SCSLLESLALSS--NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 298 ITNIVLTGHKKLT-SLPSTLFRDCKK-LVKLELQRNKLK-YLPENLFESLKELYTLNLKN 354
+ + L + + L ++ K L +L LQ N +P L + EL +L+L
Sbjct: 370 LLTLDL-SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSF 427
Query: 355 NQLE-NI-TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
N L I +SL LS L L L N LE + +L T+ L N LT G
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT------GE 481
Query: 413 SP--LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNK 469
P L C NL I+LS NR++ WI + +L L L +N+FS IP +L +
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSL 540
Query: 470 LTLDLSFNQI 479
+ LDL+ N
Sbjct: 541 IWLDLNTNLF 550
Score = 130 bits (330), Expect = 1e-31
Identities = 91/409 (22%), Positives = 157/409 (38%), Gaps = 47/409 (11%)
Query: 94 PPYFDGLHFVKHILLSHNKEITGLHKDI--FKGTPQLESLNLRGNSITELYSGVFQ--YV 149
L ++ + LS++ ++ + FK + L SL+L NS++ + +
Sbjct: 70 SSSLLSLTGLESLFLSNS----HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125
Query: 150 PKLQVLDLGSNDVAYMDP-EIFKNLTSLRILNLDHNQL---INLTRAIFNNVPNLRSLDI 205
L+ L++ SN + + L SL +L+L N + + + + L+ L I
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185
Query: 206 SGNNIS-ILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLK-E 262
SGN IS + S L+ +SN F P + LQ + IS + L +
Sbjct: 186 SGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISG--NKLSGD 238
Query: 263 LPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDC 320
+ L + + + +P ++ + L K T +P L C
Sbjct: 239 FSRAIS-TCTELKLLNISSNQFVGPIPP---LPLKSLQYLSL-AENKFTGEIPDFLSGAC 293
Query: 321 KKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE---NITSLVGLSGLNSLDLSW 376
L L+L N +P S L +L L +N + +L+ + GL LDLS+
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 377 NQLE-QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP----LKQCVNLETINLSYNRI 431
N+ ++ + +SL T+DLS N + G L+ + L N
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFS------GPILPNLCQNPKNTLQELYLQNNGF 406
Query: 432 SSLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQI 479
+ +S+ + L L L N S IP L S+ S L L N +
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNML 454
Score = 120 bits (302), Expect = 3e-28
Identities = 87/407 (21%), Positives = 160/407 (39%), Gaps = 41/407 (10%)
Query: 90 GVLSPPYFDGLHFVKHILLSHNKEITG-LHKDIFKGTPQLESLNLRGNSIT-ELYSGVFQ 147
G L + +K + LS N+ +G L + + + L +L+L N+ + + + Q
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 148 YVPK-LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAI---FNNVPNLRSL 203
LQ L L +N P N + L L+L N L+ I ++ LR L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN---YLSGTIPSSLGSLSKLRDL 447
Query: 204 DISGNNIS-ILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLK 261
+ N + +P ++ L+T + N P L + L I +S ++ L
Sbjct: 448 KLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNR--LT 503
Query: 262 -ELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFR 318
E+P + L L + L +S + +P++L + ++ + L ++P+ +F+
Sbjct: 504 GEIPKWIG-RLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDL-NTNLFNGTIPAAMFK 560
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI----TSLVGLSGLNSLDL 374
++ N + ++ + N LE L LS N ++
Sbjct: 561 -----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 375 SWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP--LKQCVNLETINLSYNRIS 432
+ FD S+ +D+S+N+L+ GY P + L +NL +N IS
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLS------GYIPKEIGSMPYLFILNLGHNDIS 669
Query: 433 SLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQ 478
D + + L LDL N IP + ++ + +DLS N
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL-TMLTEIDLSNNN 715
Score = 118 bits (298), Expect = 8e-28
Identities = 81/346 (23%), Positives = 137/346 (39%), Gaps = 35/346 (10%)
Query: 152 LQVLDLGSNDVAYMDPEI---FKNLTSLRILNLDHNQLINLTRAI--FNNVPNLRSLDIS 206
+ +DL S + + +LT L L L ++ ++ ++ F +L SLD+S
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS---HINGSVSGFKCSASLTSLDLS 108
Query: 207 GNNIS--ILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLKEL 263
N++S + L+ +SN ++ L+V+ +S + S
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS-GAN 167
Query: 264 PSGLFA--NLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRD 319
G L + + + I+ ++ N+ + + + +P D
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDV-SSNNFSTGIPF--LGD 221
Query: 320 CKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
C L L++ NKL + + EL LN+ +NQ + L L L L+ N+
Sbjct: 222 CSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 280
Query: 379 LE-QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP--LKQCVNLETINLSYNRIS-SL 434
+I +L +DLS N G P C LE++ LS N S L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFY------GAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 435 FDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQI 479
D + M LK LDL N FS +P+ L ++ ++ LTLDLS N
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Score = 115 bits (291), Expect = 7e-27
Identities = 95/412 (23%), Positives = 155/412 (37%), Gaps = 51/412 (12%)
Query: 104 KHILLSHNKEITG-LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
+++ L+ NK TG + + L L+L GN F L+ L L SN+
Sbjct: 272 QYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 163 A-YMDPEIFKNLTSLRILNLDHNQLI-NLTRAIFNNVPNLRSLDISGNNIS--ILPSGVF 218
+ + + + L++L+L N+ L ++ N +L +LD+S NN S ILP+
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 219 SDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLK-ELPSGLFANLPLLNT 276
+ LQ Y +N F P L L + +S+ + L +PS L +L L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSF--NYLSGTIPSSL-GSLSKLRD 446
Query: 277 VILGESSI-AELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDCKKLVKLELQRNKLK 334
+ L + + E+P + + ++L LT +PS L C L + L N+L
Sbjct: 447 LKLWLNMLEGEIPQE-LMYVKTLETLIL-DFNDLTGEIPSGLSN-CTNLNWISLSNNRLT 503
Query: 335 -YLPENLFESLKELYTLNLKNNQLE-NI-TSLVGLSGLNSLDLSWNQLE----------- 380
+P+ + L+ L L L NN NI L L LDL+ N
Sbjct: 504 GEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 381 ---QINLI------AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
N I + NLL F + L + N++
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ--LNRLSTRNPCNITSRVY 620
Query: 432 SSLFDDWISSMTSLKELDLRHNNFS-FIPD---QLDSIVSNKLTLDLSFNQI 479
+ S+ LD+ +N S +IP + + L+L N I
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI----LNLGHNDI 668
Score = 98.8 bits (247), Expect = 2e-21
Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 25/316 (7%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
+L SL+L N ++ + KL+ L L N + P+ + +L L LD N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 186 LI-NLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLF 242
L + + N NL + +S N ++ +P L L ++N F P +L
Sbjct: 478 LTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELG 535
Query: 243 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 302
+ + L + ++ + + +P+ +F + + + +
Sbjct: 536 -DCRSLIWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGK----RYVYIKNDGMKKECHG 589
Query: 303 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE-NI- 360
+ + S + F++ + L++ N L I
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 361 TSLVGLSGLNSLDLSWNQLEQINLI--AFDGLSSLNTVDLSHNLLTFDEYQYGYSP--LK 416
+ + L L+L N + I L LN +DLS N L G P +
Sbjct: 650 KEIGSMPYLFILNLGHNDI--SGSIPDEVGDLRGLNILDLSSNKLD------GRIPQAMS 701
Query: 417 QCVNLETINLSYNRIS 432
L I+LS N +S
Sbjct: 702 ALTMLTEIDLSNNNLS 717
Score = 96.9 bits (242), Expect = 6e-21
Identities = 61/320 (19%), Positives = 109/320 (34%), Gaps = 49/320 (15%)
Query: 172 NLTSLRILNLDHNQLINLTRAI---FNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTF 227
+ ++L L A+ ++ L SL +S ++I+ + F L +
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSL 105
Query: 228 YANSNRFQ-MFPKDL-FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
+ N L+ + +S + L L +
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF-PGKVSGGLKLNSLEVL-------- 156
Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR--DCKKLVKLELQRNKLK-YLPENLFE 342
DL NS ++G + C +L L + NK+ +
Sbjct: 157 ----DLSANS-------ISG-----ANVVGWVLSDGCGELKHLAISGNKISGDVD---VS 197
Query: 343 SLKELYTLNLKNNQLE-NITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L L++ +N I L S L LD+S N+L A + L +++S N
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 402 LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS-SMTSLKELDLRHNNFS-FIP 459
G P +L+ ++L+ N+ + D++S + +L LDL N+F +P
Sbjct: 258 QFV------GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 460 DQLDSIVSNKLTLDLSFNQI 479
S S +L LS N
Sbjct: 312 PFFGSC-SLLESLALSSNNF 330
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 130 bits (328), Expect = 7e-32
Identities = 74/329 (22%), Positives = 132/329 (40%), Gaps = 52/329 (15%)
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
VL++G + + + + ++T+ L + N L +L P LR+L++SGN +
Sbjct: 41 GNAVLNVGESGLTTLPDCLPAHITT---LVIPDNNLTSLPALP----PELRTLEVSGNQL 93
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
+ LP L +L F P L L + + L LP L
Sbjct: 94 TSLPVL-PPGLLELSIFSNPLTHLPALPSGL----CKLWI-----FGNQLTSLPV-LPPG 142
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
L L+ + ++ +A LP+ + + + + +LTSLP L +L +
Sbjct: 143 LQELS---VSDNQLASLPALP----SELCKLWA-YNNQLTSLPMLP----SGLQELSVSD 190
Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390
N+L LP ELY L NN+L ++ +L SGL L +S N+L +
Sbjct: 191 NQLASLP----TLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP----VLP 240
Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450
S L + +S N LT S L ++++ N+++ L + + ++S ++L
Sbjct: 241 SELKELMVSGNRLT--------SLPMLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNL 291
Query: 451 RHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
N S Q +++ I
Sbjct: 292 EGNPLSERTLQALREITS---APGYSGPI 317
Score = 125 bits (314), Expect = 4e-30
Identities = 70/338 (20%), Positives = 117/338 (34%), Gaps = 53/338 (15%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
LN+ + +T L + + L + N++ + LR L + NQL
Sbjct: 41 GNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPALP----PELRTLEVSGNQL 93
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
+L + L ++ LPSG L + N+ P L ++
Sbjct: 94 TSLPVLP-PGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSLP-VLPPGLQ 144
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
L V + L LP+ L + L L + + LP + + + +
Sbjct: 145 ELSV-----SDNQLASLPA-LPSELCKLW---AYNNQLTSLPMLP----SGLQELSV-SD 190
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
+L SLP+ +L KL N+L LP LKEL + N+L ++ L
Sbjct: 191 NQLASLPTLP----SELYKLWAYNNRLTSLPALP-SGLKELI---VSGNRLTSLPVL--P 240
Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTF--DEYQYGYSPLKQCVNLETI 424
S L L +S N+L + S L ++ + N LT + L + T+
Sbjct: 241 SELKELMVSGNRLTSLP----MLPSGLLSLSVYRNQLTRLPES-------LIHLSSETTV 289
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
NL N +S + +TS F
Sbjct: 290 NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327
Score = 120 bits (302), Expect = 1e-28
Identities = 66/307 (21%), Positives = 117/307 (38%), Gaps = 49/307 (15%)
Query: 173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
+LN+ + L L + ++ +L I NN++ LP+ +L+T + N
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPAL----PPELRTLEVSGN 91
Query: 233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF 292
+ P L + L + L LPSG L + + + + LP
Sbjct: 92 QLTSLP-VLPPGLLELSIFSNPL--THLPALPSG-------LCKLWIFGNQLTSLPVLP- 140
Query: 293 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL 352
+ + + +L SLP+ +L KL N+L LP L L++
Sbjct: 141 ---PGLQELSV-SDNQLASLPALP----SELCKLWAYNNQLTSLP----MLPSGLQELSV 188
Query: 353 KNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
+NQL ++ +L L L N+L + S L + +S N LT
Sbjct: 189 SDNQLASLPTLPS--ELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPVLPS- 241
Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472
L+ + +S NR++SL + L L + N + +P+ L + S T+
Sbjct: 242 -------ELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSET-TV 289
Query: 473 DLSFNQI 479
+L N +
Sbjct: 290 NLEGNPL 296
Score = 88.4 bits (219), Expect = 2e-18
Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 42/191 (21%)
Query: 320 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQL 379
L + + L LP+ L + L + +N L ++ +L L +L++S NQL
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLPAHITTLV---IPDNNLTSLPAL--PPELRTLEVSGNQL 93
Query: 380 EQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI 439
+ + GL L+ L L + + N+++SL
Sbjct: 94 TSLP-VLPPGLLELSIFSNPLTHLP-----------ALPSGLCKLWIFGNQLTSLPV--- 138
Query: 440 SSMTSLKELDLRHNNFSFIPDQLDSIVS-----NKLT-----------LDLSFNQI---- 479
L+EL + N + +P + N+LT L +S NQ+
Sbjct: 139 -LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP 197
Query: 480 -AIVDLRTLEI 489
+L L
Sbjct: 198 TLPSELYKLWA 208
Score = 79.6 bits (196), Expect = 1e-15
Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 36/275 (13%)
Query: 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
+ + N+ +T L P L+ L++ N + L + + L L +N +
Sbjct: 124 CKLWIFGNQ-LTSLPVLP----PGLQELSVSDNQLASLPALPSE----LCKLWAYNNQLT 174
Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
+ + L+ L++ NQL +L L L N ++ LP+
Sbjct: 175 ----SLPMLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLPA----LPSG 222
Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
L+ + NR P L+ + +S ++ L LP + L L+ + +
Sbjct: 223 LKELIVSGNRLTSLP----VLPSELKELMVSGNR--LTSLPMLP-SGLLSLS---VYRNQ 272
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
+ LP L + ++ T + L G+ L+ + +++ + +
Sbjct: 273 LTRLPESLI-HLSSETTVNLEGNP-LSERT---LQALREITSAPGYSGPIIRFDMAGASA 327
Query: 344 LKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
+E L+L + + + +
Sbjct: 328 PRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362
Score = 68.0 bits (166), Expect = 6e-12
Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 25/161 (15%)
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
++ E R + + + LN+ + L + + + + +L + N L
Sbjct: 16 RRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT 74
Query: 381 QINLIAFDGLSSLNTVDLSHNLLTF--DEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
+ L T+++S N LT + L + + +L
Sbjct: 75 SLP----ALPPELRTLEVSGNQLTSLPVL-------PPGLLELSIFSNPLTHLPALP--- 120
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
+ L +L + N + +P + L +S NQ+
Sbjct: 121 ----SGLCKLWIFGNQLTSLPVLPPGLQE----LSVSDNQL 153
Score = 31.4 bits (71), Expect = 1.2
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 592 NCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS 651
N + LT +PD LP L++ +N++ PPE + L++S N ++
Sbjct: 46 NVGESGLTTLPDCLPAHIT-------TLVIPDNNLTSLPALPPE----LRTLEVSGNQLT 94
Query: 652 HVDTMYPYLNHLELID 667
+ + P L L +
Sbjct: 95 SLPVLPPGLLELSIFS 110
Score = 30.6 bits (69), Expect = 2.1
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 619 LILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLEL 665
L + + + P IT L + NN++ + + P L LE+
Sbjct: 45 LNVGESGLTTL---PDCLPAHITTLVIPDNNLTSLPALPPELRTLEV 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 121 bits (306), Expect = 4e-31
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 3/172 (1%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
L NK ++ L F +L L L N + L +G+F+ + L+ L + N + +
Sbjct: 44 LQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
+F L +L L LD NQL +L +F+++ L L + N + LP GVF L L+
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
+N+ + P+ F ++ L+ + + LK +P G F +L L + L
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELK--TLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Score = 120 bits (303), Expect = 1e-30
Identities = 60/228 (26%), Positives = 91/228 (39%), Gaps = 51/228 (22%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
+ L+L+ N ++ L S F + KL++L L N + + IFK L +L L + N+L
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
L +F+ + NL L + N + LP VF L KL N
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-------------- 144
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 307
L+ LP G+F L L + L N
Sbjct: 145 ------------LQSLPKGVFDKLTSLKELRL---------------YNN---------- 167
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
+L +P F +L L+L N+LK +PE F+SL++L L L+ N
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 117 bits (294), Expect = 2e-29
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 1/160 (0%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
L F L ++ + L+ NK + L IFK LE+L + N + L GVF +
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
L L L N + + P +F +LT L L+L +N+L +L + +F+ + +L+ L + N +
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
+P G F L +L+T ++N+ + P+ F ++ L+++
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
Score = 108 bits (273), Expect = 1e-26
Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 8/199 (4%)
Query: 208 NNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL 267
+ GV S + +S + P ++ A+ K L + + L LPS
Sbjct: 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDL-----QSNKLSSLPSKA 56
Query: 268 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 327
F L L + L ++ + LP+ +F N+ + +T KL +LP +F L +L
Sbjct: 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVNLAELR 115
Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLI 385
L RN+LK LP +F+SL +L L+L N+L+++ V L+ L L L NQL+++
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 386 AFDGLSSLNTVDLSHNLLT 404
AFD L+ L T+ L +N L
Sbjct: 176 AFDKLTELKTLKLDNNQLK 194
Score = 104 bits (261), Expect = 4e-25
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 22/212 (10%)
Query: 274 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 333
N+V + +PS++ + + L KL+SLPS F KL L L NKL
Sbjct: 18 KNSVDCSSKKLTAIPSNIP---ADTKKLDL-QSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73
Query: 334 KYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLS 391
+ LP +F+ LK L TL + +N+L+ + V L L L L NQL+ + FD L+
Sbjct: 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 392 SLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSL 445
L + L +N L FD + +L+ + L N++ + + +T L
Sbjct: 134 KLTYLSLGYNELQSLPKGVFD----------KLTSLKELRLYNNQLKRVPEGAFDKLTEL 183
Query: 446 KELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN 477
K L L +N +P+ + L L N
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 102 bits (256), Expect = 2e-24
Identities = 68/228 (29%), Positives = 102/228 (44%), Gaps = 43/228 (18%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
KKLT++PS + D KL+LQ NKL LP F L +L L L +N+L+ + + +
Sbjct: 26 KKLTAIPSNIPAD---TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQC 418
L L +L ++ N+L+ + + FD L +L + L N L FD
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----------SL 132
Query: 419 VNLETINLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDL 474
L ++L YN + SL FD +TSLKEL L +N +P+ ++ TL L
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFD----KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188
Query: 475 SFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS 522
NQ+ + A D E M+ L +NP C C+
Sbjct: 189 DNNQLK-------RVPEGAFDSLEKLKMLQ-------LQENPWDCTCN 222
Score = 94.7 bits (236), Expect = 9e-22
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
L F L ++ + ++ NK + L +F L L L N + L VF + K
Sbjct: 76 LPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
L L LG N++ + +F LTSL+ L L +NQL + F+ + L++L + N +
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 212 ILPSGVFSDLRKLQTFYANSN 232
+P G F L KL+ N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215
Score = 41.9 bits (99), Expect = 4e-04
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 571 TKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
K C CN + SV+CSS LT +P +P + +L L +N ++
Sbjct: 5 CKKDGGVCSCNNNK----NSVDCSSKKLTAIPSNIPADTK-------KLDLQSNKLSSLP 53
Query: 631 ESPPESYKLITDLDLSYNNISHV 653
+ L L+ N + +
Sbjct: 54 SKAFHRLTKLRLLYLNDNKLQTL 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 118 bits (299), Expect = 2e-30
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 31/232 (13%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND-VAYMDPEIFKNLTSLRILNLDHN 184
P ++L L + + S F +P + + + + + ++ F NL+ + + + +
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 185 QLI-NLTRAIFNNVPNLRSLDISGNNISILPSGVF-SDLRKLQTFYANSNRFQMFPKDLF 242
+ + + +P L+ L I + + P N +
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY-------- 142
Query: 243 AEMKYLQVIKISYHKDSLKELPSGLFANLP-LLNTVILGESSIAELPSDLFWNSTNITNI 301
+ +P F L T+ L + + F N T + +
Sbjct: 143 -----------------MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAV 184
Query: 302 VLTGHKKLTSLPSTLFRD-CKKLVKLELQRNKLKYLPENLFESLKELYTLNL 352
L +K LT + F L++ + + LP E LKEL N
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 113 bits (286), Expect = 1e-28
Identities = 48/236 (20%), Positives = 85/236 (36%), Gaps = 32/236 (13%)
Query: 173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN-ISILPSGVFSDLRKLQTFYANS 231
S + L L L + F+N+PN+ + +S + + L S F +L K+ +
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 232 NRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL 291
R +L + LPLL + + + + P
Sbjct: 90 TR-------------------------NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLT 124
Query: 292 FWNSTNI-TNIVLTGHKKLTSLPSTLFRD-CKKLVKLELQRNKLKYLPENLFESLKELYT 349
ST+I + +T + +TS+P F+ C + + L+L N + F K
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAV 184
Query: 350 LNLKNNQLENIT--SLVGL-SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
KN L I + G+ SG + LD+S + + + L L + L
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT-WTL 239
Score = 98.9 bits (247), Expect = 2e-23
Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 16/196 (8%)
Query: 69 FSKLNITTINTLAFSNSPS----------NVGVLSPPYFDGLHFVKHILLSHNKEITGLH 118
+ ++ TI + AFSN P+ + L F L V HI + + + +T +
Sbjct: 38 LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97
Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVF-QYVPKLQVLDLGSND-VAYMDPEIFKNLTS- 175
D K P L+ L + + +L++ N + + F+ L +
Sbjct: 98 PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157
Query: 176 LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN-ISILPSGVFSDLR-KLQTFYANSNR 233
L L +N ++ FN L ++ ++ N ++++ F + +
Sbjct: 158 TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216
Query: 234 FQMFPKDLFAEMKYLQ 249
P +K L
Sbjct: 217 VTALPSKGLEHLKELI 232
Score = 90.4 bits (225), Expect = 1e-20
Identities = 41/199 (20%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 260 LKELPSGLFANLPLLNTVILGES-SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
L+ +PS F+NLP ++ + + ++ +L S F+N + +T+I + + LT + +
Sbjct: 43 LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102
Query: 319 DCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNL-KNNQLENI--TSLVGLSG-LNSLD 373
+ L L + LK P+ S + L + N + +I + GL +L
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162
Query: 374 LSWNQLEQINLIAFDGLSSLNTVDLSHN--LLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
L N + AF+G L+ V L+ N L D+ + + +++S +
Sbjct: 163 LYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDA--FGGVYS--GPSLLDVSQTSV 217
Query: 432 SSLFDDWISSMTSLKELDL 450
++L + + L +
Sbjct: 218 TALPSKGLEHLKELIARNT 236
Score = 90.1 bits (224), Expect = 2e-20
Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 39/228 (17%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
++ +PS P T+ L E+ + +PS F N NI+ I ++ L L S F
Sbjct: 22 DIQRIPSLP----PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77
Query: 319 DCKKLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNS---LDL 374
+ K+ +E++ + L Y+ + + L L L + N L+ L + + L++
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137
Query: 375 SWN-QLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
+ N + I + AF GL + T+ L N +S
Sbjct: 138 TDNPYMTSIPVNAFQGLCNE---------------------------TLTLKLYNNGFTS 170
Query: 434 LFDDWISSMTSLKELDLRHNNF--SFIPDQLDSIVSNKLTLDLSFNQI 479
+ + + T L + L N + D + S LD+S +
Sbjct: 171 V-QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217
Score = 33.1 bits (76), Expect = 0.23
Identities = 9/76 (11%), Positives = 19/76 (25%), Gaps = 13/76 (17%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
C C+ + + +P P T L L +
Sbjct: 4 SSPPCECHQEE-----DFRVTCKDIQRIPSLPPSTQT--------LKLIETHLRTIPSHA 50
Query: 634 PESYKLITDLDLSYNN 649
+ I+ + +S +
Sbjct: 51 FSNLPNISRIYVSIDV 66
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 122 bits (307), Expect = 2e-30
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 5/172 (2%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSG-VFQYVPKLQVLDLGSNDVAYMDPE 168
+++ + + + T L+L N+++ L + + L L L N + ++ E
Sbjct: 26 SKQQLPNVPQSLPSYT---ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82
Query: 169 IFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY 228
F + +LR L+L N L L +F+++ L L + N+I ++ F D+ +LQ Y
Sbjct: 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142
Query: 229 ANSNRFQMFPKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVIL 279
+ N+ FP +L + L + + + LK+LP LP L
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194
Score = 118 bits (297), Expect = 4e-29
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 108 LSHNKEITGLHKDI-FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
LSHN ++ L + L SL L N + + S F VP L+ LDL SN + +D
Sbjct: 46 LSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD 104
Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSD---LRK 223
+F +L +L +L L +N ++ + R F ++ L+ L +S N IS P + D L K
Sbjct: 105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164
Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256
L +SN+ + P ++ + H
Sbjct: 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197
Score = 111 bits (279), Expect = 9e-27
Identities = 60/308 (19%), Positives = 97/308 (31%), Gaps = 79/308 (25%)
Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL-PENLFESLKELYTLNLKNNQLE 358
NI+ ++L ++P +L L+L N L L E L L++L L +N L
Sbjct: 21 NILSCSKQQLPNVPQSLPSY---TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77
Query: 359 NITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQY 410
I+S + L LDLS N L ++ F L +L + L +N + F+
Sbjct: 78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---- 133
Query: 411 GYSPLKQCVNLETINLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDSIV 466
L+ + LS N+IS D + + L LDL N +P +
Sbjct: 134 ------DMAQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKL 186
Query: 467 SNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDL 526
+ L L++NP+ C+C Y L
Sbjct: 187 PAWVKNGLY------------------------------------LHNNPLECDCKLYQL 210
Query: 527 IRFVSKKMTKTVYQMLELVT-------------DNLECFGNAGVGINSVRPENLTCDTKP 573
+ +V E + D C + + LT
Sbjct: 211 FSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTI---R 267
Query: 574 CPARCYCN 581
C +
Sbjct: 268 CDTKQQGM 275
Score = 107 bits (269), Expect = 2e-25
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 6/144 (4%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
L + +LLSHN + + + F P L L+L N + L +F + L+VL
Sbjct: 60 PTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNV---PNLRSLDISGNNISIL 213
L +N + +D F+++ L+ L L NQ+ + + P L LD+S N + L
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 214 PSGVFSDLRKL--QTFYANSNRFQ 235
P L Y ++N +
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLE 202
Score = 97.2 bits (242), Expect = 6e-22
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL-FANLPLLNTVILGESSIAELP 288
+ + P+ L + L + ++L L + L L++++L + + +
Sbjct: 26 SKQQLPNVPQSLPSYTALLDL-----SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80
Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
S+ F N+ + L+ L +L LF D + L L L N + + N FE + +L
Sbjct: 81 SEAFVPVPNLRYLDLS-SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139
Query: 349 TLNLKNNQLENI-----TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL--NTVDLSHN 401
L L NQ+ L L LDLS N+L+++ L L + N + L +N
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
Score = 66.4 bits (162), Expect = 7e-12
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
++ I++ AF P+ ++ L F L ++ +LL +N I + ++ F+
Sbjct: 75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFE 133
Query: 124 GTPQLESLNLRGNSITELYSGVFQYV---PKLQVLDLGSNDVAYMDPEIFKNLTSL--RI 178
QL+ L L N I+ + + PKL +LDL SN + + + L +
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193
Query: 179 LNLDHNQL 186
L L +N L
Sbjct: 194 LYLHNNPL 201
Score = 44.1 bits (104), Expect = 1e-04
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 570 DTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHF 629
CPA C C + ++CS L ++P LP L L +N+++
Sbjct: 8 SVVSCPANCLCASN------ILSCSKQQLPNVPQSLPSYTA-------LLDLSHNNLSR- 53
Query: 630 LESPPESYKLI--TDLDLSYNNISHVD 654
L + +L L LS+N+++ +
Sbjct: 54 LRAEWTPTRLTNLHSLLLSHNHLNFIS 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 120 bits (303), Expect = 3e-29
Identities = 74/420 (17%), Positives = 132/420 (31%), Gaps = 63/420 (15%)
Query: 61 PDENFISLF-SKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHK 119
PD+NF S + + +T++ + + + ++ IT +
Sbjct: 16 PDDNFASEVAAAFEMQATDTISEEQLAT---------------LTSLDCHNSS-ITDM-- 57
Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
+ L L N+IT L L L SN + +D LT L L
Sbjct: 58 TGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYL 111
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
N D N+L L + P L L+ + N ++ + S +L + N+
Sbjct: 112 NCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD 165
Query: 240 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 299
L + S++K + EL + LLN + ++I +L + +T
Sbjct: 166 --VTPQTQLTTLDCSFNK--ITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLT 215
Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 359
+ KLT + +L + N L L + L L+ L
Sbjct: 216 FLDC-SSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH---CIQTDLLE 268
Query: 360 ITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV 419
I L + L +I + + L +D +T L Q
Sbjct: 269 I-DLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDCQAAGIT-------ELDLSQNP 318
Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
L + L+ ++ L +S T LK L + + + + Q
Sbjct: 319 KLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQT 373
Score = 114 bits (286), Expect = 5e-27
Identities = 63/361 (17%), Positives = 115/361 (31%), Gaps = 43/361 (11%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
S + + + + L LD ++ + M + LT L L N +
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
L + NL L N ++ L + L KL ++N+ ++
Sbjct: 78 TLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPL 128
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 307
L + + + L E+ ++ L + + T +T +
Sbjct: 129 LTYLNCARNT--LTEID---VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC-SFN 180
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLS 367
K+T L K L +L N + L +L L+ +N+L I + L+
Sbjct: 181 KITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEI-DVTPLT 233
Query: 368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
L D S N L +++ LS L T+ L L L
Sbjct: 234 QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLL-------EIDLTHNTQLIYFQAE 283
Query: 428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIP-DQLDSIVSNKLTLDLSFNQIAIVDLRT 486
R D ++ T L LD + + + Q +V L L+ ++ +D+
Sbjct: 284 GCRKIKELD--VTHNTQLYLLDCQAAGITELDLSQNPKLV----YLYLNNTELTELDVSH 337
Query: 487 L 487
Sbjct: 338 N 338
Score = 103 bits (260), Expect = 1e-23
Identities = 54/323 (16%), Positives = 101/323 (31%), Gaps = 34/323 (10%)
Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181
QL L+ N +L LD N + +D L LN
Sbjct: 144 VSHNTQLTELDCHLNKKITK--LDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNC 198
Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL 241
D N + L N L LD S N ++ + + L +L F + N
Sbjct: 199 DTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVST 252
Query: 242 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 301
+++ L + L E+ L ++ ++T + +
Sbjct: 253 LSKLTTLHC-----IQTDLLEIDLTHNTQLIYFQA-----EGCRKIKELDVTHNTQLYLL 302
Query: 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 361
+T L KLV L L +L L +L +L+ N +++ +
Sbjct: 303 DC-QAAGITELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFS 355
Query: 362 SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNL 421
S+ + LN+ + Q I + ++ T+ +S +LL P +
Sbjct: 356 SVGKIPALNNNFEAEGQT--ITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG----DG 409
Query: 422 ETINLSYNRISSLFDDWISSMTS 444
+ + N I+ + +
Sbjct: 410 GVYDQATNTITWENLSTDNPAVT 432
Score = 97.5 bits (243), Expect = 1e-21
Identities = 60/334 (17%), Positives = 100/334 (29%), Gaps = 51/334 (15%)
Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
N S + ++ + L SLD ++I+ + L L
Sbjct: 18 DNFASEVAAAFEMQATDTIS---EEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICT 72
Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-- 288
SN ++ L + +K L L L L + + + +L
Sbjct: 73 SNNITTLD---LSQNTNLTYLACDSNK--LTNLD---VTPLTKLTYLNCDTNKLTKLDVS 124
Query: 289 -----SDLFWNSTNITNIVLTGHKKLTSL--------PSTLFRDCKKLVKLELQRNKLKY 335
+ L +T I ++ + +LT L +L L+ NK+
Sbjct: 125 QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184
Query: 336 LPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNT 395
L K L LN N + + L L LD S N+L +I+ L+ L
Sbjct: 185 LD---VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTY 237
Query: 396 VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
D S N LT + L T++ + + ++ T L
Sbjct: 238 FDCSVNPLT-------ELDVSTLSKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRK 287
Query: 456 SFIPDQLDSIVSNKL--TLDLSFNQIAIVDLRTL 487
D + N LD I +DL
Sbjct: 288 IKELD----VTHNTQLYLLDCQAAGITELDLSQN 317
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 114 bits (288), Expect = 2e-28
Identities = 47/209 (22%), Positives = 73/209 (34%), Gaps = 10/209 (4%)
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
+ S +N D L L + + L +S N + +L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS 289
+ + + L + +S+++ L+ LP L LP L + + + + LP
Sbjct: 63 DRAELTKLQ--VDGTLPVLGTLDLSHNQ--LQSLPL-LGQTLPALTVLDVSFNRLTSLPL 117
Query: 290 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
+ + L +L +LP L KL KL L N L LP L L+ L T
Sbjct: 118 GALRGLGELQELYL-KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 350 LNLKNNQLENI-TSLVGLSGLNSLDLSWN 377
L L+ N L I G L L N
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 114 bits (286), Expect = 3e-28
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 6/166 (3%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
LS N + +L LNL +T+L V +P L LDL N + + P
Sbjct: 38 LSENL-LYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL-P 93
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
+ + L +L +L++ N+L +L + L+ L + GN + LP G+ + KL+
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL 273
+N P L ++ L + ++SL +P G F + L
Sbjct: 154 SLANNNLTELPAGLLNGLENLD--TLLLQENSLYTIPKGFFGSHLL 197
Score = 107 bits (270), Expect = 4e-26
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 4/151 (2%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
S + + L + +T L + P L +L+L N + L + Q +P
Sbjct: 46 FSLATLMPYTRLTQLNLDRAE-LTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPA 101
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
L VLD+ N + + + L L+ L L N+L L + P L L ++ NN++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLF 242
LP+G+ + L L T N PK F
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 106 bits (267), Expect = 1e-25
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 23/204 (11%)
Query: 264 PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 323
P + + V + ++ LP DL + T + L+ + L + +L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRL 57
Query: 324 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQI 382
+L L R +L L + +L L TL+L +NQL+++ L L L LD+S+N+L +
Sbjct: 58 TQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 383 NLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
L A GL L + L N L P LE ++L+ N ++ L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLT-------PT---PKLEKLSLANNNLTELPA 165
Query: 437 DWISSMTSLKELDLRHNNFSFIPD 460
++ + +L L L+ N+ IP
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPK 189
Score = 106 bits (266), Expect = 2e-25
Identities = 66/282 (23%), Positives = 97/282 (34%), Gaps = 47/282 (16%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
+ LT+LP L +D L L N L L LNL +L + L
Sbjct: 20 RNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76
Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVN 420
L +LDLS NQL+ + L L +L +D+S N LT
Sbjct: 77 PVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALR----------GLGE 125
Query: 421 LETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIA 480
L+ + L N + +L ++ L++L L +NN + +P L + + N TL L N +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 481 IV-----DLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMT 535
+ L L+ NP CNC R++
Sbjct: 186 TIPKGFFGSHLLP--------------------FAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 536 KTVYQMLELVTDNLECFGNAGVGI-NSVRPENLTCDTKPCPA 576
VY + V A V NS + K CP
Sbjct: 226 N-VYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGKGCPT 266
Score = 100 bits (250), Expect = 2e-23
Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 10/167 (5%)
Query: 73 NITTINTLAFSNSP-------SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGT 125
+ T + + L + + LSHN+ + L + +
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ-LQSLP-LLGQTL 99
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
P L L++ N +T L G + + +LQ L L N++ + P + L L+L +N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
L L + N + NL +L + N++ +P G F L + + N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205
Score = 41.2 bits (97), Expect = 7e-04
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
C S + VNC +LT +P LP L L N + F +
Sbjct: 4 CEVSKVA------SHLEVNCDKRNLTALPPDLPKDTT-------ILHLSENLLYTFSLAT 50
Query: 634 PESYKLITDLDLSYNNISH--VDTMYPYLNHLEL 665
Y +T L+L ++ VD P L L+L
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 109 bits (275), Expect = 2e-26
Identities = 56/349 (16%), Positives = 112/349 (32%), Gaps = 56/349 (16%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
E+L +G++ Y V + D N + +I L
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69
Query: 188 NLTRAIFN-NVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
+ + P +L++ + P F L LQ ++
Sbjct: 70 ATADLLEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAA-------------- 114
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
L ELP + L T+ L + + LP+ + + + + +
Sbjct: 115 ------------GLMELPDTM-QQFAGLETLTLARNPLRALPASI-ASLNRLRELSIRAC 160
Query: 307 KKLTSLPSTL--------FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 358
+LT LP L + L L L+ ++ LP + +L+ L +L ++N+ L
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLS 219
Query: 359 NI-TSLVGLSGLNSLDLSW-NQLEQINLIAFDGLSSLNTVDLSH-NLLTF--DEYQYGYS 413
+ ++ L L LDL L F G + L + L + L +
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLD------ 272
Query: 414 PLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
+ + LE ++L S I+ + + + + + + +
Sbjct: 273 -IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
Score = 88.1 bits (219), Expect = 4e-19
Identities = 50/292 (17%), Positives = 102/292 (34%), Gaps = 23/292 (7%)
Query: 63 ENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIF 122
+ + N I T + +L G + L + F
Sbjct: 46 WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGR---VALELRSVP-LPQFPDQAF 101
Query: 123 KGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
+ + L+ + + + EL Q L+ L L N + + P +L LR L++
Sbjct: 102 RLS-HLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIR 158
Query: 183 H-NQLINLTRAIFNNVP--------NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
+L L + + NL+SL + I LP+ ++L+ L++ ++
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSP 217
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL-GESSIAELPSDLF 292
+ + L+ + + +L+ P F L +IL S++ LP D+
Sbjct: 218 LSALGPAI-HHLPKLEELDLRGCT-ALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDI- 273
Query: 293 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL 344
T + + L G L+ LPS + + + + L ++ +
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQAQLDQHRPVAR 324
Score = 84.2 bits (209), Expect = 8e-18
Identities = 47/317 (14%), Positives = 97/317 (30%), Gaps = 38/317 (11%)
Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
+ + L + R + + + + N ++ Q
Sbjct: 5 HHHHHHSSGRENLYFQGS---TALRPYHDVLSQWQRHYNADRNRWHSAW-RQANSNNPQI 60
Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286
+ L + + + L + P F L L + + + + E
Sbjct: 61 ETRTGRALKATADLL-EDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLME 118
Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR-NKLKYLPENLFESLK 345
LP + + + L L +LP+++ +L +L ++ +L LPE L
Sbjct: 119 LPDTM-QQFAGLETLTL-ARNPLRALPASI-ASLNRLRELSIRACPELTELPEPL----- 170
Query: 346 ELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTF 405
+ GL L SL L W + + + L +L ++ + ++ L+
Sbjct: 171 ---------ASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSA 220
Query: 406 --DEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH-NNFSFIPDQL 462
+ LE ++L + LK L L+ +N +P +
Sbjct: 221 LGPA-------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
Query: 463 DSIVSNKLT-LDLSFNQ 478
+ L LDL
Sbjct: 274 HRLTQ--LEKLDLRGCV 288
Score = 82.7 bits (205), Expect = 2e-17
Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 18/229 (7%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
+L+ L + A ++ N I + L + L
Sbjct: 24 ALRPYHDVL-SQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKATADLLED 77
Query: 319 DC-KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSW 376
V LEL+ L P+ F L L + + L + ++ +GL +L L+
Sbjct: 78 ATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR 136
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHN--LLTFDE---YQYGYSPLKQCVNLETINLSYNRI 431
N L + + L+ L + + L E + VNL+++ L + I
Sbjct: 137 NPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195
Query: 432 SSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS-FNQI 479
SL I+++ +LK L +R++ S + + + + LDL +
Sbjct: 196 RSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLPKLE-ELDLRGCTAL 242
Score = 48.8 bits (117), Expect = 3e-06
Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 33/161 (20%)
Query: 320 CKKLVKLELQR-NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
L Q L+ + L + Y + N+ + + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVL-SQWQRHYNAD--RNRWHSAWRQANSNNPQIETRTGRA 67
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
L+ D L + L + D
Sbjct: 68 LKAT----ADLLEDATQP-----------------------GRVALELRSVPLPQF-PDQ 99
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
++ L+ + + +PD + + TL L+ N +
Sbjct: 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLE-TLTLARNPL 139
Score = 39.9 bits (94), Expect = 0.002
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 3/106 (2%)
Query: 94 PPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRG-NSITELYSGVFQYVPKL 152
P L ++ + L + L+ L L+ +++ L + + + +L
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHR-LTQL 279
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVP 198
+ LDL P + L + I+ + + L + P
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 106 bits (266), Expect = 3e-26
Identities = 34/126 (26%), Positives = 63/126 (50%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
+ + L N+I + G F KL+ +DL +N ++ + P+ F+ L SL L L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
+ L +++F + +L+ L ++ N I+ L F DL L N+ Q K F+ +
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 246 KYLQVI 251
+ +Q +
Sbjct: 152 RAIQTM 157
Score = 105 bits (264), Expect = 6e-26
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
+ I L N I + F +L ++L N I+EL FQ + L L L N +
Sbjct: 34 ITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
+ +F+ L SL++L L+ N++ L F ++ NL L + N + + G FS LR
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 223 KLQTFYANSN 232
+QT + N
Sbjct: 153 AIQTMHLAQN 162
Score = 89.7 bits (223), Expect = 2e-20
Identities = 40/182 (21%), Positives = 64/182 (35%), Gaps = 51/182 (28%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
++ + L+ N + + F+ LR +D+S N IS L F LR L + N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
+ ELP LF L L ++L
Sbjct: 92 --------------------------ITELPKSLFEGLFSLQLLLL-------------- 111
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
+ N K+ L F+D L L L NKL+ + + F L+ + T++L
Sbjct: 112 -NAN----------KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160
Query: 354 NN 355
N
Sbjct: 161 QN 162
Score = 87.4 bits (217), Expect = 1e-19
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
N V + E+P++L IT I L + +P F KKL +++L N++
Sbjct: 14 NIVDCRGKGLTEIPTNL---PETITEIRL-EQNTIKVIPPGAFSPYKKLRRIDLSNNQIS 69
Query: 335 YLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSS 392
L + F+ L+ L +L L N++ + + GL L L L+ N++ + + AF L +
Sbjct: 70 ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129
Query: 393 LNTVDLSHNLLT 404
LN + L N L
Sbjct: 130 LNLLSLYDNKLQ 141
Score = 68.1 bits (167), Expect = 5e-13
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 25/117 (21%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
L+P F GL L SL L GN ITEL +F+ +
Sbjct: 71 LAPDAFQGL-------------------------RSLNSLVLYGNKITELPKSLFEGLFS 105
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
LQ+L L +N + + + F++L +L +L+L N+L + + F+ + ++++ ++ N
Sbjct: 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 55.8 bits (135), Expect = 7e-09
Identities = 43/220 (19%), Positives = 63/220 (28%), Gaps = 68/220 (30%)
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
+ L N ++ I AF L I+LS N+I
Sbjct: 37 IRLEQNTIKVIPPGAFSPYK----------------------------KLRRIDLSNNQI 68
Query: 432 SSLFDDWISSMTSLKELDLRHNNFSFIPDQL-DSIVSNKLT-LDLSFNQI------AIVD 483
S L D + SL L L N + +P L + + L L L+ N+I A D
Sbjct: 69 SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF--SLQLLLLNANKINCLRVDAFQD 126
Query: 484 LRTLE-----------IKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532
L L I P + L NP C+C L ++
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH-------LAQNPFICDCHLKWLADYLHT 179
Query: 533 KMTKTVYQMLELVTDNLECFG---NAGVGINSVRPENLTC 569
+ T C A I ++ + C
Sbjct: 180 NPIE---------TSGARCTSPRRLANKRIGQIKSKKFRC 210
Score = 45.8 bits (109), Expect = 1e-05
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 571 TKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
+ CPA C C+ + V+C LT +P LP T ++ L N+I
Sbjct: 2 SLHCPAACTCSNN------IVDCRGKGLTEIPTNLPETIT-------EIRLEQNTIKVIP 48
Query: 631 ESPPESYKLITDLDLSYNNISHV 653
YK + +DLS N IS +
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISEL 71
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 102 bits (255), Expect = 1e-24
Identities = 36/125 (28%), Positives = 60/125 (48%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
L++N+ IFK PQL +N N IT++ G F+ + + L SN + +
Sbjct: 39 LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
++FK L SL+ L L N++ + F + ++R L + N I+ + G F L L T
Sbjct: 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158
Query: 228 YANSN 232
+N
Sbjct: 159 NLLAN 163
Score = 97.8 bits (244), Expect = 2e-23
Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 129 ESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L L N T L + G+F+ +P+L+ ++ +N + ++ F+ + + + L N+L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
N+ +F + +L++L + N I+ + + F L ++ N+ F +
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 248 LQVI 251
L +
Sbjct: 155 LSTL 158
Score = 90.1 bits (224), Expect = 1e-20
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F L ++ I S+NK IT + + F+G + + L N + + +F+ + L+ L
Sbjct: 53 FKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
L SN + + + F L+S+R+L+L NQ+ + F+ + +L +L++ N
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 86.2 bits (214), Expect = 2e-19
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 22/159 (13%)
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQLENITSLV 364
++KL +P + + +L L N+ L +F+ L +L +N NN++ +I
Sbjct: 20 NQKLNKIPEHIPQY---TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76
Query: 365 --GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLK 416
G SG+N + L+ N+LE + F GL SL T+ L N +T F
Sbjct: 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS------- 129
Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
++ ++L N+I+++ ++ SL L+L N F
Sbjct: 130 ---SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 85.9 bits (213), Expect = 4e-19
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST-LFRDCKKLVKLELQRNKL 333
TV + ++P + + L + + T L +T +F+ +L K+ NK+
Sbjct: 14 TTVDCSNQKLNKIPEHI---PQYTAELRL-NNNEFTVLEATGIFKKLPQLRKINFSNNKI 69
Query: 334 KYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLS 391
+ E FE + + L +N+LEN+ + GL L +L L N++ + +F GLS
Sbjct: 70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS 129
Query: 392 SLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYN 429
S+ + L N +T FD L +L T+NL N
Sbjct: 130 SVRLLSLYDNQITTVAPGAFD-------TLH---SLSTLNLLAN 163
Score = 85.5 bits (212), Expect = 5e-19
Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 52/185 (28%)
Query: 174 TSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
L L++N+ L IF +P LR ++ S N I+ + G F + SN
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF 292
R L+ + +F L L T++L
Sbjct: 92 R--------------------------LENVQHKMFKGLESLKTLML------------- 112
Query: 293 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL 352
+N ++T + + F + L L N++ + F++L L TLNL
Sbjct: 113 --RSN----------RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
Query: 353 KNNQL 357
N
Sbjct: 161 LANPF 165
Score = 75.8 bits (187), Expect = 1e-15
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 264 PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 323
+G+F LP L + + I ++ F ++ + I+LT +L ++ +F+ + L
Sbjct: 49 ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLENVQHKMFKGLESL 107
Query: 324 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQIN 383
L L+ N++ + + F L + L+L +NQ+ +
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-------------------- 147
Query: 384 LIAFDGLSSLNTVDLSHN 401
AFD L SL+T++L N
Sbjct: 148 --AFDTLHSLSTLNLLAN 163
Score = 70.1 bits (172), Expect = 8e-14
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
+ F+G V ILL+ N+ + + +FKG L++L LR N IT + + F +
Sbjct: 72 IEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
+++L L N + + P F L SL LNL N
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 42.7 bits (101), Expect = 1e-04
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CP +C C + +V+CS+ L +P+++P + L L+NN +
Sbjct: 5 CPEKCRCEGT------TVDCSNQKLNKIPEHIPQYTAE-------LRLNNNEFTVLEATG 51
Query: 634 P-ESYKLITDLDLSYNNISHV 653
+ + ++ S N I+ +
Sbjct: 52 IFKKLPQLRKINFSNNKITDI 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 99.7 bits (249), Expect = 2e-23
Identities = 55/228 (24%), Positives = 105/228 (46%), Gaps = 33/228 (14%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
NL+ S+T+ + + + + ++D+ + + L ++R L L N+L +
Sbjct: 22 IKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
+ + + NL L ++GN + LP+GVF L L+ N+ Q P +F ++ L
Sbjct: 78 I--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 308
+ +++++ L+ LP G+F L TN+T + L + +
Sbjct: 136 TYLNLAHNQ--LQSLPKGVFDKL------------------------TNLTELDL-SYNQ 168
Query: 309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
L SLP +F +L L L +N+LK +P+ +F+ L L + L +N
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Score = 93.5 bits (233), Expect = 2e-21
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 3/165 (1%)
Query: 87 SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVF 146
+N + S L V+++ L NK + + K L L L GN + L +GVF
Sbjct: 49 NNSDIKSVQGIQYLPNVRYLALGGNK-LHDI--SALKELTNLTYLILTGNQLQSLPNGVF 105
Query: 147 QYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206
+ L+ L L N + + +F LT+L LNL HNQL +L + +F+ + NL LD+S
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 207 GNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
N + LP GVF L +L+ N+ + P +F + LQ I
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Score = 84.7 bits (210), Expect = 2e-18
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 37/198 (18%)
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
L K +T + + + ++ + +K + + L + L L
Sbjct: 18 FAETIKANLKK-KSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGG 72
Query: 355 NQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEY 408
N+L +I++L L+ L L L+ NQL+ + FD L++L + L N L FD
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD-- 130
Query: 409 QYGYSPLKQCVNLETINLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDS 464
+ NL +NL++N++ SL FD +T+L ELDL +N +P+
Sbjct: 131 --------KLTNLTYLNLAHNQLQSLPKGVFD----KLTNLTELDLSYNQLQSLPEG--- 175
Query: 465 IVSNKLT----LDLSFNQ 478
V +KLT L L NQ
Sbjct: 176 -VFDKLTQLKDLRLYQNQ 192
Score = 84.7 bits (210), Expect = 2e-18
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 7/184 (3%)
Query: 49 PFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILL 108
N++ D + L L N ++ L + +++L
Sbjct: 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALG-GNKLHDISA-----LKELTNLTYLIL 92
Query: 109 SHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPE 168
+ N+ + L +F L+ L L N + L GVF + L L+L N + +
Sbjct: 93 TGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151
Query: 169 IFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY 228
+F LT+L L+L +NQL +L +F+ + L+ L + N + +P GVF L LQ +
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211
Query: 229 ANSN 232
+ N
Sbjct: 212 LHDN 215
Score = 81.6 bits (202), Expect = 3e-17
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 14/205 (6%)
Query: 201 RSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
++ +S I P F++ K + + + +I + +
Sbjct: 1 ETITVSTPIKQIFPDDAFAETIKA---NLKKKSVTDAV----TQNELNSIDQIIANNSDI 53
Query: 261 KELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 320
K + LP + + LG + + ++ + TN+T ++LTG +L SLP+ +F
Sbjct: 54 KSVQG--IQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTG-NQLQSLPNGVFDKL 108
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQ 378
L +L L N+L+ LP+ +F+ L L LNL +NQL+++ V L+ L LDLS+NQ
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLL 403
L+ + FD L+ L + L N L
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 81.2 bits (201), Expect = 3e-17
Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 36/214 (16%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
+ P FA N L + S+ + + +I I+ + S+ +
Sbjct: 9 IKQIFPDDAFAETIKAN---LKKKSVTDAVT--QNELNSIDQIIANN-SDIKSVQG--IQ 60
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSW 376
+ L L NKL + + L L L L NQL+++ + V L+ L L L
Sbjct: 61 YLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNR 430
NQL+ + FD L++L ++L+HN L FD + NL ++LSYN+
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD----------KLTNLTELDLSYNQ 168
Query: 431 ISSL----FDDWISSMTSLKELDLRHNNFSFIPD 460
+ SL FD +T LK+L L N +PD
Sbjct: 169 LQSLPEGVFD----KLTQLKDLRLYQNQLKSVPD 198
Score = 60.4 bits (147), Expect = 3e-10
Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 35/173 (20%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
P F + K L++ + L + + N+ ++++ + L
Sbjct: 8 PIKQIFPDDAFAETIKA---NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYL 62
Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
+ L L N+L + A L NL + L
Sbjct: 63 PNVRYLALGGNKLHD--ISALKEL----------------------------TNLTYLIL 92
Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
+ N++ SL + +T+LKEL L N +PD + ++N L+L+ NQ+
Sbjct: 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 99.0 bits (247), Expect = 2e-23
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
L + L F+G +L LNL N + L +GVF + +L L L +N +A +
Sbjct: 42 LQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
+F +LT L L L NQL +L +F+ + L+ L ++ N + +P+G F L LQT
Sbjct: 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160
Query: 228 YANSNRFQMFPKDLFAEMKYLQVI 251
++N+ Q P F + LQ I
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTI 184
Score = 97.8 bits (244), Expect = 5e-23
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
E L+L+ + L F+ + KL L+L N + + +F +LT L L L +NQL +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
L +F+++ L L + GN + LPSGVF L KL+ N+N+ Q P F ++ L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
Q +S + L+ +P G F L L T+ L
Sbjct: 158 Q--TLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 97.1 bits (242), Expect = 1e-22
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 256 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 315
L L F L L + L + + L + +F + T + + L +L SLP
Sbjct: 43 QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLG 101
Query: 316 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLD 373
+F +L KL L N+LK LP +F+ L +L L L NQL++I + L+ L +L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 374 LSWNQLEQINLIAFDGLSSLNTVDLSHN 401
LS NQL+ + AFD L L T+ L N
Sbjct: 162 LSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 93.6 bits (233), Expect = 1e-21
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
LS F GL + + L +N+ + L +F +L +L L N + L GVF ++ +
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
L L LG N + + +F LT L+ L L+ NQL ++ F+ + NL++L +S N +
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 212 ILPSGVFSDLRKLQTFYANSN 232
+P G F L KLQT N
Sbjct: 169 SVPHGAFDRLGKLQTITLFGN 189
Score = 90.5 bits (225), Expect = 2e-20
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
L+L L L+ A F + L L++ N + L +GVF DL +L T +N+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
L LP G+F +L L+ + LG + + LPS +F
Sbjct: 95 --------------------------LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
T + + L +L S+P+ F L L L N+L+ +P F+ L +L T+ L
Sbjct: 129 RLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187
Query: 354 NNQ 356
NQ
Sbjct: 188 GNQ 190
Score = 87.4 bits (217), Expect = 2e-19
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
SL +PSG+ A+ L+ L + +A L F T +T + L +L +L + +F
Sbjct: 25 SLDSVPSGIPADTEKLD---LQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFD 80
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSW 376
D +L L L N+L LP +F+ L +L L L NQL+++ S V L+ L L L+
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLT 404
NQL+ I AFD L++L T+ LS N L
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 84.7 bits (210), Expect = 2e-18
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--G 365
L +L FR KL L L N+L+ L +F+ L EL TL L NNQL ++ V
Sbjct: 46 GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH 105
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCV 419
L+ L+ L L NQL+ + FD L+ L + L+ N L FD+
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL----------T 155
Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
NL+T++LS N++ S+ + L+ + L N F
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 72.4 bits (178), Expect = 2e-14
Identities = 77/285 (27%), Positives = 105/285 (36%), Gaps = 76/285 (26%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
K L S+PS + D +KL +LQ L L + F L +L LNL NQL+ +++ V
Sbjct: 24 KSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
L+ L +L L+ NQL + L FD L L+ +
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHL----------------------------TQLDKL 112
Query: 425 NLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT----LDLSF 476
L N++ SL FD +T LKEL L N IP +KLT L LS
Sbjct: 113 YLGGNQLKSLPSGVFD----RLTKLKELRLNTNQLQSIPAG----AFDKLTNLQTLSLST 164
Query: 477 NQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSN--Y--DLIRFVSK 532
NQ+ + A D + L N C+ Y IR S
Sbjct: 165 NQLQ-------SVPHGAFDRLGKLQTIT-------LFGNQFDCSRCEILYLSQWIRENSN 210
Query: 533 KMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKP--CP 575
K+ Q L D + C VR +T +T CP
Sbjct: 211 KVKDGTGQNLHESPDGVTCSDG-----KVVR--TVTNETLKYECP 248
Score = 48.9 bits (117), Expect = 2e-06
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
L FD L + + L N+ + L +F +L+ L L N + + +G F +
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
LQ L L +N + + F L L+ + L NQ
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 38.5 bits (90), Expect = 0.005
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 572 KPCPAR--CYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHF 629
K C C CN V+C SL +P +P E +L L + +
Sbjct: 2 KTCETVTGCTCNEGK----KEVDCQGKSLDSVPSGIPADTE-------KLDLQSTGLATL 50
Query: 630 LESPPESYKLITDLDLSYNNISHV 653
++ +T L+L YN + +
Sbjct: 51 SDATFRGLTKLTWLNLDYNQLQTL 74
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 103 bits (257), Expect = 4e-23
Identities = 47/239 (19%), Positives = 88/239 (36%), Gaps = 35/239 (14%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKKLTSLPSTLF 317
++ + F+ L + E S L + + L L+SLP L
Sbjct: 21 TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL-NRLNLSSLPDNLP 79
Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWN 377
++ LE+ +N L LPE L L+ +N+L + L + L LD+ N
Sbjct: 80 ---PQITVLEITQNALISLPE----LPASLEYLDACDNRLSTLPEL--PASLKHLDVDNN 130
Query: 378 QLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD 437
QL + + + L ++ +N LT + +LE +++ N+++ L +
Sbjct: 131 QLTMLP----ELPALLEYINADNNQLT--------MLPELPTSLEVLSVRNNQLTFLPE- 177
Query: 438 WISSMTSLKELDLRHNNFSFIPD---QLDSIVSNKLTLDLSFNQIA-----IVDLRTLE 488
SL+ LD+ N +P + ++ N+I I+ L
Sbjct: 178 ---LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233
Score = 102 bits (256), Expect = 5e-23
Identities = 67/340 (19%), Positives = 105/340 (30%), Gaps = 85/340 (25%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK-NLTSLRILNLDHNQLIN 188
S N N+I+ Y+ F K + L + + + + L L+ L +
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
L + P + L+I+ N + LP + L L A NR P+
Sbjct: 74 LPDNLP---PQITVLEITQNALISLPEL-PASLEYL---DACDNRLSTLPELP------- 119
Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 308
SLK L D+ N +
Sbjct: 120 ---------ASLKHL--------------------------DVDNN-------------Q 131
Query: 309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSG 368
LT LP L + N+L LPE L L+++NNQL + L
Sbjct: 132 LTMLPELP----ALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPEL--PES 181
Query: 369 LNSLDLSWNQLEQI--NLIAFDGLSSLNTV-DLSHNLLTF--DEYQYGYSPLKQCVNLET 423
L +LD+S N LE + + N +T + + T
Sbjct: 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN-------ILSLDPTCT 234
Query: 424 INLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD 463
I L N +SS + +S T+ + FS Q +
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274
Score = 102 bits (255), Expect = 8e-23
Identities = 54/302 (17%), Positives = 104/302 (34%), Gaps = 32/302 (10%)
Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQ-YVPKLQVLDLGSNDVAYM 165
+N I+G + D F + E L G + E S + + + + L L +++ +
Sbjct: 16 NSFYNT-ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74
Query: 166 DPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225
+ +T L + N LI+L +L LD N +S LP L+
Sbjct: 75 PDNLPPQITVL---EITQNALISLPELP----ASLEYLDACDNRLSTLPE----LPASLK 123
Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
++N+ M P L+ I ++ L LP L + + + +
Sbjct: 124 HLDVDNNQLTMLP----ELPALLEYINADNNQ--LTMLP----ELPTSLEVLSVRNNQLT 173
Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC---KKLVKLELQRNKLKYLPENLFE 342
LP ++ + + L SLP+ R+ + + + N++ ++PEN+
Sbjct: 174 FLPELP----ESLEALDV-STNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL- 227
Query: 343 SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
SL T+ L++N L + D ++ D
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287
Query: 403 LT 404
Sbjct: 288 FP 289
Score = 78.1 bits (192), Expect = 3e-15
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 24/158 (15%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL---VGLSGLNSLDLSWNQLEQI 382
N + + F + + L SL ++ + L L+ L +
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74
Query: 383 NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSM 442
++ L +++ N L S + +LE ++ NR+S+L +
Sbjct: 75 PDNLPPQITVL---EITQNALI--------SLPELPASLEYLDACDNRLSTLPE----LP 119
Query: 443 TSLKELDLRHNNFSFIPDQLDSIVSNKLT-LDLSFNQI 479
SLK LD+ +N + +P+ L ++ NQ+
Sbjct: 120 ASLKHLDVDNNQLTMLPELP-----ALLEYINADNNQL 152
Score = 58.4 bits (141), Expect = 4e-09
Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 29/302 (9%)
Query: 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
++I +N+ +T L + LE L++R N +T L + L+ LD+ +N +
Sbjct: 143 EYINADNNQ-LTMLPELP----TSLEVLSVRNNQLTFL----PELPESLEALDVSTNLLE 193
Query: 164 YMDPEIFKN---LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSD 220
+ +N + N++ ++ I + ++ + N +S S
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSSRIRESLSQ 252
Query: 221 LRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG 280
++ F M + L ++ ++ + S ++
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE------ 306
Query: 281 ESSIAELPSDLFWNSTNITNIV-LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 339
E + +++ V + +L Q +
Sbjct: 307 -----EHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATE 361
Query: 340 LFESLKELYTLNLKNNQL----ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNT 395
E L NL+ L L SL +LE + IA D + +L+
Sbjct: 362 SCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHF 421
Query: 396 VD 397
VD
Sbjct: 422 VD 423
Score = 28.8 bits (64), Expect = 8.0
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 592 NCSSASLTHMPDYLPVTYEDKKATSIQ-LILHNNSINHFLESPPESYKLITDLDLSYNNI 650
+ +L+ +PD LP I L + N++ E P + LD N +
Sbjct: 65 QLNRLNLSSLPDNLP--------PQITVLEITQNALISLPELPAS----LEYLDACDNRL 112
Query: 651 SHVDTMYPYLNHLEL 665
S + + L HL++
Sbjct: 113 STLPELPASLKHLDV 127
Score = 28.4 bits (63), Expect = 9.9
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 618 QLILHNNSINHFLESPPESY-KLITDLDLSYNNISHV-DTMYPYLNHLEL 665
+ L + N + E ++L L+ N+S + D + P + LE+
Sbjct: 38 KQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEI 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 95.1 bits (237), Expect = 1e-21
Identities = 55/337 (16%), Positives = 112/337 (33%), Gaps = 79/337 (23%)
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
+ G ++V D +L + L+ + + + NL L++ N
Sbjct: 19 ANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQ 74
Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA 269
I+ L +L K+ + N LK + + A
Sbjct: 75 ITDLAP--LKNLTKITELELSGNP--------------------------LKNVSA--IA 104
Query: 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329
L + T+ L + I ++ L L L
Sbjct: 105 GLQSIKTLDLTSTQITDVTP---------------------------LAGLSNLQVLYLD 137
Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDG 389
N++ + L L L++ N Q+ ++T L LS L +L N++ I+
Sbjct: 138 LNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--PLAS 193
Query: 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELD 449
L +L V L +N ++ SPL NL + L+ I++ + +
Sbjct: 194 LPNLIEVHLKNNQIS------DVSPLANTSNLFIVTLTNQTITNQ--PVFYNNNLVVPNV 245
Query: 450 LRHNNFSFIPDQLDSIVSNKLTL---DLSFNQIAIVD 483
++ + + I + +S+ T +L++N + ++
Sbjct: 246 VKGPSGAPIA---PATISDNGTYASPNLTWNLTSFIN 279
Score = 94.0 bits (234), Expect = 3e-21
Identities = 49/289 (16%), Positives = 103/289 (35%), Gaps = 45/289 (15%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
++ I + D + +++T+ + + + L V ++
Sbjct: 3 ITQPTAINVIFPD--PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG 58
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
+ L +L L L NQ+ +L N+ + L++SGN + + + + L+ ++T
Sbjct: 59 --VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTL 112
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
S + A L L + L + I +
Sbjct: 113 DLTSTQITDVTP----------------------------LAGLSNLQVLYLDLNQITNI 144
Query: 288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL 347
TN+ + + G+ +++ L + KL L+ NK+ + SL L
Sbjct: 145 SP--LAGLTNLQYLSI-GNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNL 197
Query: 348 YTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV 396
++LKNNQ+ +++ L S L + L+ + + + L N V
Sbjct: 198 IEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246
Score = 92.4 bits (230), Expect = 1e-20
Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 19/211 (9%)
Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
L + G+S++ + + + IT + +T++ + L+ LEL
Sbjct: 16 PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAF-GTGVTTIEG--VQYLNNLIGLEL 70
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFD 388
+ N++ L ++L ++ L L N L+N++++ GL + +LDL+ Q+ +
Sbjct: 71 KDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT--PLA 126
Query: 389 GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKEL 448
GLS+L + L N +T SPL NL+ +++ ++S L +++++ L L
Sbjct: 127 GLSNLQVLYLDLNQIT------NISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTL 178
Query: 449 DLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
N S I L S+ N + + L NQI
Sbjct: 179 KADDNKISDISP-LASL-PNLIEVHLKNNQI 207
Score = 85.1 bits (211), Expect = 3e-18
Identities = 53/291 (18%), Positives = 111/291 (38%), Gaps = 22/291 (7%)
Query: 98 DGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDL 157
L I + +T + +L+ G +T + QY+ L L+L
Sbjct: 16 PALANAIKIAAGKSN-VTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLEL 70
Query: 158 GSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGV 217
N + + P KNLT + L L N L N++ + ++++LD++ I+ +
Sbjct: 71 KDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP-- 124
Query: 218 FSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTV 277
+ L LQ Y + N+ A + LQ + I + + +L ANL L T+
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ--VSDLTP--LANLSKLTTL 178
Query: 278 ILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP 337
++ I+++ + N+ + L + +++ + + L + L + P
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLK-NNQISDVSP--LANTSNLFIVTLTNQTITNQP 233
Query: 338 ENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFD 388
+L + + ++ S +L+WN IN +++
Sbjct: 234 VFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYT 284
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 98.3 bits (244), Expect = 1e-21
Identities = 53/328 (16%), Positives = 103/328 (31%), Gaps = 71/328 (21%)
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
+ S + + P NL + + N + ++ + + ++I
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK 56
Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
+ L + + N N ++ I NL
Sbjct: 57 SVQG--IQYLPNVTKLFLNGN----------------KLTDIKP------------LTNL 86
Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
L + L E+ I +L S +D KKL L L+ N
Sbjct: 87 KNLGWLFLDENKIKDLSS---------------------------LKDLKKLKSLSLEHN 119
Query: 332 KLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLS 391
+ + L +L +L L NN++ +IT L L+ L++L L NQ+ +++ GL+
Sbjct: 120 GISDING--LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--DIVPLAGLT 175
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
L + LS N ++ L NL+ + L + + S++ +
Sbjct: 176 KLQNLYLSKNHIS------DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229
Query: 452 HNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
+ D K + +
Sbjct: 230 DGSLVTPEIISDDGDYEKPNVKWHLPEF 257
Score = 98.3 bits (244), Expect = 2e-21
Identities = 48/310 (15%), Positives = 110/310 (35%), Gaps = 43/310 (13%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
+ I +++ + +L V D L S+ + +++ +
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIK 56
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
++ +PN+ L ++GN ++ + ++L+ L + + N
Sbjct: 57 SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN--------------- 97
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 307
++ +S +L L ++ L + I+++ + + ++ L G+
Sbjct: 98 -KIKDLSS------------LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL-GNN 141
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLS 367
K+T + KL L L+ N++ + L +L L L N + ++ +L GL
Sbjct: 142 KITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLK 197
Query: 368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
L+ L+L + + L NTV + L E ++ +
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257
Query: 428 YNRISSLFDD 437
N +S +F
Sbjct: 258 TNEVSFIFYQ 267
Score = 80.5 bits (198), Expect = 7e-16
Identities = 52/320 (16%), Positives = 104/320 (32%), Gaps = 44/320 (13%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
D L +T ++ + + I + QY+P + L
Sbjct: 17 DDAFAETIKDNLKKKS-VTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLF 71
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
L N + + P NL +L L LD N++ +L+ ++ L+SL + N IS +
Sbjct: 72 LNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING- 126
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNT 276
L +L++ Y +N+ + ++ + L L+T
Sbjct: 127 -LVHLPQLESLYLGNNK--------------------------ITDITV--LSRLTKLDT 157
Query: 277 VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL 336
+ L ++ I+++ T + N+ L ++ L + K L LEL +
Sbjct: 158 LSLEDNQISDIVP--LAGLTKLQNLYL-SKNHISDLRA--LAGLKNLDVLELFSQECLNK 212
Query: 337 PENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV 396
P N +L T+ + L + ++ W+ E N ++F +
Sbjct: 213 PINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272
Query: 397 DLSHNLLTFDEYQYGYSPLK 416
Sbjct: 273 KAKARFHGRVTQPLKEVYTV 292
Score = 54.0 bits (129), Expect = 1e-07
Identities = 30/211 (14%), Positives = 64/211 (30%), Gaps = 33/211 (15%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
L ++ + L +NK IT + + +L++L+L N I+++
Sbjct: 127 LVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDI--------------- 168
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
LT L+ L L N + +L + NL L++ P
Sbjct: 169 -----------VPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPIN 215
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNT 276
S+L T + ++ ++ + + +H S +F +
Sbjct: 216 HQSNLVVPNTVKNTDG--SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273
Query: 277 VILGESSIAELPSDLFWNSTNITNIVLTGHK 307
P + + + + K
Sbjct: 274 AKARFHGRVTQPLKEVYTVSYDVDGTVIKTK 304
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 89.1 bits (222), Expect = 8e-21
Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 14/160 (8%)
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
+++LT L + + + KL+ +L L + L E L +L + + VG
Sbjct: 13 YQELTRLKAAVGE-LPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIYQELTRLKAAVG 70
Query: 366 -LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTF--DEYQYGYSPLKQCVNLE 422
L + L + +L ++ A L + + + LT + +
Sbjct: 71 ELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTELKAA-------VGELPEKS 122
Query: 423 TINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
+ Y ++ L + + + + + +
Sbjct: 123 KLQEIYQELTQLKAA-VGELPDQSKQQQIYQELTDLKTAF 161
Score = 89.1 bits (222), Expect = 8e-21
Identities = 18/164 (10%), Positives = 53/164 (32%), Gaps = 14/164 (8%)
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSWN 377
+ + KL+ +L L + L E L +L + ++ L + L +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 60
Query: 378 QLEQINLIAFDGLSSLNTVDLSHNLLTF--DEYQYGYSPLKQCVNLETINLSYNRISSLF 435
+L ++ A L + + + LT + + + Y ++ L
Sbjct: 61 ELTRLK-AAVGELPEKSKLQEIYQELTRLKAA-------VGELPEKSKLQEIYQELTELK 112
Query: 436 DDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
+ + +L + + + + + ++ + ++
Sbjct: 113 AA-VGELPEKSKLQEIYQELTQLKAAVGEL-PDQSKQQQIYQEL 154
Score = 82.9 bits (206), Expect = 1e-18
Identities = 23/166 (13%), Positives = 54/166 (32%), Gaps = 8/166 (4%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
P+ L +T L + V + +P+ L ++ + + L L + +
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIYQE 61
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
L L A+ +P L ++ L + +L + + E+
Sbjct: 62 LTRLKAAVG-ELPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIYQELTELKAAV-GEL 118
Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL 291
++ Y + L +L + + LP + + +L +
Sbjct: 119 PEKSKLQEIYQE--LTQLKAAV-GELPDQSKQQQIYQELTDLKTAF 161
Score = 79.0 bits (196), Expect = 2e-17
Identities = 27/212 (12%), Positives = 55/212 (25%), Gaps = 57/212 (26%)
Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
L L + +L L A+ +P L ++ L + V +L +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVG-ELPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIY 59
Query: 232 NRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL 291
L L + LP + +
Sbjct: 60 QE--------------------------LTRLKAA-VGELPEKSKL------------QE 80
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
+ +LT L + + + KL+ +L L + L E L
Sbjct: 81 IYQ-------------ELTRLKAAVGE-LPEKSKLQEIYQELTELKAAV-GELPEKSKLQ 125
Query: 352 LKNNQLENI-TSLVGLSGLNSLDLSWNQLEQI 382
+L + ++ L + + +L +
Sbjct: 126 EIYQELTQLKAAVGELPDQSKQQQIYQELTDL 157
Score = 76.7 bits (190), Expect = 1e-16
Identities = 18/154 (11%), Positives = 48/154 (31%), Gaps = 18/154 (11%)
Query: 344 LKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
L E L +L + ++ L + L + +L ++ A L + + +
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQE 61
Query: 403 LTF--DEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPD 460
LT + + + Y ++ L + + +L + + +
Sbjct: 62 LTRLKAA-------VGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTELKA 113
Query: 461 QLDSIVSNKLTLDLSFNQI-----AIVDLRTLEI 489
+ + K L + ++ A+ +L
Sbjct: 114 AVGEL-PEKSKLQEIYQELTQLKAAVGELPDQSK 146
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 86.7 bits (215), Expect = 2e-19
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
+P+G+ N +L L ++ I +L +F + N+ + L +L +LP +F
Sbjct: 30 RHASVPAGIPTNAQILY---LHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFD 85
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-GLSGLNSLDLSWN 377
+L L+L N+L LP +F+ L L L + N+L + + L+ L L L N
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145
Query: 378 QLEQINLIAFDGLSSLNTVDLSHN 401
QL+ I AFD LSSL L N
Sbjct: 146 QLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 79.7 bits (197), Expect = 5e-17
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
Q+L L N + ++P +F +L +L+ L L NQL L +F+++ L LD+ N +++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPK--DLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
LPS VF L L+ + N+ P+ + + +L + ++ LK +P G F
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL-----DQNQLKSIPHGAFDR 157
Query: 271 LPLLNTVIL 279
L L L
Sbjct: 158 LSSLTHAYL 166
Score = 78.6 bits (194), Expect = 1e-16
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
L N+ IT L +F L+ L L N + L GVF + +L VLDLG+N + +
Sbjct: 47 LHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
+F L L+ L + N+L L R + +L L + N + +P G F L L
Sbjct: 106 AVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164
Query: 228 YANSN 232
Y N
Sbjct: 165 YLFGN 169
Score = 77.8 bits (192), Expect = 2e-16
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
+ L L N IT+L GVF + L+ L LGSN + + +F +LT L +L+L NQL
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
L A+F+ + +L+ L + N ++ LP G L L + N+ + P F + L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 249 QVI 251
Sbjct: 162 THA 164
Score = 70.9 bits (174), Expect = 5e-14
Identities = 43/183 (23%), Positives = 65/183 (35%), Gaps = 52/183 (28%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
T+ +IL L NQ+ L +F+++ NL+ L + N + LP GVF L +L +N+
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
L LPS +F L
Sbjct: 100 --------------------------LTVLPSAVFDRL---------------------- 111
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
++ + + KLT LP L L L +N+LK +P F+ L L L
Sbjct: 112 --VHLKELFM-CCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167
Query: 354 NNQ 356
N
Sbjct: 168 GNP 170
Score = 63.9 bits (156), Expect = 1e-11
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
L P FD L +K + L N+ + L +F QL L+L N +T L S VF +
Sbjct: 55 LEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
L+ L + N + + P + LT L L LD NQL ++ F+ + +L + GN
Sbjct: 114 LKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 58.9 bits (143), Expect = 6e-10
Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 40/159 (25%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
K+ S+P+ + + + L L N++ L +F+SL L L L +NQL + V
Sbjct: 29 KRHASVPAGIPTNAQIL---YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
L+ L LDL NQL + FD L V+L+ +
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRL----------------------------VHLKEL 117
Query: 425 NLSYNRISSL---FDDWISSMTSLKELDLRHNNFSFIPD 460
+ N+++ L + +T L L L N IP
Sbjct: 118 FMCCNKLTELPRGIE----RLTHLTHLALDQNQLKSIPH 152
Score = 58.6 bits (142), Expect = 9e-10
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETI 424
L L NQ+ ++ FD L +L + L N L FD L +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD----------SLTQLTVL 93
Query: 425 NLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIA 480
+L N+++ L FD + LKEL + N + +P ++ + L L NQ+
Sbjct: 94 DLGTNQLTVLPSAVFD----RLVHLKELFMCCNKLTELPRGIERLTHLT-HLALDQNQLK 148
Query: 481 IV 482
+
Sbjct: 149 SI 150
Score = 39.3 bits (92), Expect = 0.002
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CP++C C+ + +V+C S +P +P + L LH+N I
Sbjct: 13 CPSQCSCSGT------TVDCRSKRHASVPAGIPTNAQ-------ILYLHDNQITKLEPGV 59
Query: 634 PESYKLITDLDLSYNNIS 651
+S + +L L N +
Sbjct: 60 FDSLINLKELYLGSNQLG 77
Score = 32.0 bits (73), Expect = 0.52
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP----DQLDSIVSNKLTLDL 474
N + + L N+I+ L S+ +LKEL L N +P D L + LDL
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDL 95
Query: 475 SFNQI 479
NQ+
Sbjct: 96 GTNQL 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 87.4 bits (217), Expect = 4e-19
Identities = 52/309 (16%), Positives = 97/309 (31%), Gaps = 69/309 (22%)
Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
NL + + N + ++ + + ++I + L + + N
Sbjct: 21 DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76
Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
N ++ I ANL L + L E+ + +L S
Sbjct: 77 GN----------------KLTDIKP------------LANLKNLGWLFLDENKVKDLSS- 107
Query: 291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
+D KKL L L+ N + + L +L +L
Sbjct: 108 --------------------------LKDLKKLKSLSLEHNGISDING--LVHLPQLESL 139
Query: 351 NLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY 410
L NN++ +IT L L+ L++L L NQ+ I GL+ L + LS N ++
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS------ 191
Query: 411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL 470
L NL+ + L + + S++ + + D K
Sbjct: 192 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 251
Query: 471 TLDLSFNQI 479
+ +
Sbjct: 252 NVKWHLPEF 260
Score = 86.6 bits (215), Expect = 7e-19
Identities = 52/302 (17%), Positives = 103/302 (34%), Gaps = 67/302 (22%)
Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
++ I + D + NL+ S+T+ + + + + ++D+ +
Sbjct: 7 TITVPTPIKQIFSD--DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ 62
Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
+ L ++ L L+ N+L ++ N+ NL L + N + L S DL+KL++
Sbjct: 63 G--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKS 116
Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286
N + ++ +LP L ++ LG + I +
Sbjct: 117 LSLEHNG--------------------------ISDING--LVHLPQLESLYLGNNKITD 148
Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346
+ KL L L+ N++ + L +
Sbjct: 149 ITV---------------------------LSRLTKLDTLSLEDNQISDIVP--LAGLTK 179
Query: 347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
L L L N + ++ +L GL L+ L+L + + L NTV + L
Sbjct: 180 LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
Query: 407 EY 408
E
Sbjct: 240 EI 241
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 85.1 bits (211), Expect = 4e-19
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
+P+G+ A L+ L +S+ LP+ +F T++T + L G KL SLP+ +F
Sbjct: 18 GRTSVPTGIPAQTTYLD---LETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFN 73
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSW 376
L L L N+L+ LP +F+ L +L L L NQL+++ V L+ L L L
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHN 401
NQL+ + FD L+SL + L N
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 83.2 bits (206), Expect = 2e-18
Identities = 42/123 (34%), Positives = 63/123 (51%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
L+L NS+ L +GVF + L L LG N + + +F LTSL LNL NQL +
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
L +F+ + L+ L ++ N + LP GVF L +L+ N+ + P +F + L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 249 QVI 251
Q I
Sbjct: 151 QYI 153
Score = 81.6 bits (202), Expect = 7e-18
Identities = 38/126 (30%), Positives = 60/126 (47%)
Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
L + L +F L L L GN + L +GVF + L L+L +N + +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
+F LT L+ L L+ NQL +L +F+ + L+ L + N + +P GVF L LQ
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 227 FYANSN 232
+ + N
Sbjct: 153 IWLHDN 158
Score = 73.2 bits (180), Expect = 7e-15
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 51/183 (27%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
L+L+ N L +L +F+ + +L L + GN + LP+GVF+ L L ++N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
L+ LP+G+F L
Sbjct: 88 --------------------------LQSLPNGVFDKL---------------------- 99
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
T + + L +L SLP +F +L L L +N+LK +P+ +F+ L L + L
Sbjct: 100 --TQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156
Query: 354 NNQ 356
+N
Sbjct: 157 DNP 159
Score = 70.5 bits (173), Expect = 5e-14
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--G 365
L SLP+ +F + L +L L NKL+ LP +F L L LNL NQL+++ + V
Sbjct: 39 SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
L+ L L L+ NQL+ + FD L+ L + L N L
Sbjct: 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 58.9 bits (143), Expect = 4e-10
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 41/160 (25%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
+ TS+P+ + L +L+ N LK LP +F+ L L L L N+L+++ + V
Sbjct: 17 QGRTSVPTGIPAQTTYL---DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
L+ L L+LS NQL+ + FD L L+ +
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKL----------------------------TQLKEL 105
Query: 425 NLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPD 460
L+ N++ SL FD +T LK+L L N +PD
Sbjct: 106 ALNTNQLQSLPDGVFD----KLTQLKDLRLYQNQLKSVPD 141
Score = 53.1 bits (128), Expect = 5e-08
Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 32/122 (26%)
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETI 424
LDL N L+ + FD L+SL + L N L F+ + +L +
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN----------KLTSLTYL 81
Query: 425 NLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT----LDLSF 476
NLS N++ SL FD +T LKEL L N +PD V +KLT L L
Sbjct: 82 NLSTNQLQSLPNGVFD----KLTQLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQ 133
Query: 477 NQ 478
NQ
Sbjct: 134 NQ 135
Score = 39.3 bits (92), Expect = 0.002
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CP+RC C+ + +V C S T +P +P L L NS+
Sbjct: 1 CPSRCSCSGT------TVECYSQGRTSVPTGIPAQTT-------YLDLETNSLKSLPNGV 47
Query: 634 PESYKLITDLDLSYNNI 650
+ +T L L N +
Sbjct: 48 FDELTSLTQLYLGGNKL 64
Score = 29.3 bits (66), Expect = 3.2
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 422 ETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
++L N + SL + +TSL +L L N +P+ + + +++ L+LS NQ+
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 85.4 bits (212), Expect = 1e-17
Identities = 74/379 (19%), Positives = 139/379 (36%), Gaps = 73/379 (19%)
Query: 127 QLESLNLRGNSITELY----SGVFQYVPKLQVLDLGSND-----VAYMDPEIFKNLTSLR 177
+++ L+L+ +T S + +P LQ L L N + + + L
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145
Query: 178 ILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
L L++ L L + P+ + L +S N+I+ +GV
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAK-PDFKELTVSNNDIN--EAGV--------------- 187
Query: 233 RFQMFPKDLFAEMKYLQVIKISYHK---DSLKELPSGLFANLPL----LNTVILGESSIA 285
++ + L L+ +K+ D+ ++L + + L L + LG+ +A
Sbjct: 188 --RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245
Query: 286 ELPSDLFWNSTNITNIVL-------TGHKKLTSLPSTLFRDCKKLVKLELQRNKL----- 333
EL L S+ + + + G L + R + L +L L N+L
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV----LRAKESLKELSLAGNELGDEGA 301
Query: 334 KYLPENLFESLKELYTLNLKNNQL-----ENITS-LVGLSGLNSLDLSWNQLEQINLIAF 387
+ L E L E +L +L +K+ + +S L L L +S N+LE +
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361
Query: 388 -DGL----SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS-----SLFDD 437
GL S L + L+ ++ + L +L ++LS N + L +
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421
Query: 438 WISSMTSLKELDLRHNNFS 456
L++L L +S
Sbjct: 422 VRQPGCLLEQLVLYDIYWS 440
Score = 84.2 bits (209), Expect = 2e-17
Identities = 71/412 (17%), Positives = 128/412 (31%), Gaps = 73/412 (17%)
Query: 119 KDIFKGTPQLESLNLRGNSITELY----SGVFQYVPKLQVLDLGSND-----VAYMDPEI 169
++ Q + + L +TE S + P L L+L SN+ V + +
Sbjct: 21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80
Query: 170 FKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS-----ILPSGVFS 219
++ L+L + L L+ + P L+ L +S N + +L G+
Sbjct: 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQLLCEGLLD 139
Query: 220 DLRKLQTFYANSNRFQMFPKDLFAEM----KYLQVIKISYHK---DSLKELPSGLFANLP 272
+L+ + A + + + +S + ++ L GL +
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199
Query: 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 332
L + L + L + L +L L NK
Sbjct: 200 QLEALKLESCGV--------------------TSDNCRDLCGIV-ASKASLRELALGSNK 238
Query: 333 L-----KYLPENLFESLKELYTLNLKNNQLENI------TSLVGLSGLNSLDLSWNQL-- 379
L L L L TL + + L L L L+ N+L
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298
Query: 380 EQINLIA---FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS---- 432
E L+ + L ++ + T + S L Q L + +S NR+
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358
Query: 433 -SLFDDWISSMTSLKELDLRHNNFSF--IPDQLDSIVSNK--LTLDLSFNQI 479
L + L+ L L + S ++++N LDLS N +
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
Score = 75.8 bits (187), Expect = 1e-14
Identities = 60/368 (16%), Positives = 134/368 (36%), Gaps = 59/368 (16%)
Query: 152 LQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDI 205
+Q LD+ +++ E+ L +++ LD L +++ A+ N P L L++
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNL 63
Query: 206 SGNNIS-----ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
N + + G+ + K+Q + + + L+ + +L
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST--LRTLP------TL 115
Query: 261 KELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTL 316
+EL L N +LG++ + L L + + L L +++
Sbjct: 116 QEL--HLSDN-------LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL-ASV 165
Query: 317 FRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLEN------ITSLVG 365
R +L + N + + L + L +S +L L L++ + + +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225
Query: 366 LSGLNSLDLSWNQL--EQINLIA---FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVN 420
+ L L L N+L + + S L T+ + +T L+ +
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285
Query: 421 LETINLSYNRIS-----SLFDDWISSMTSLKELDLRHNNFSFIPDQL--DSIVSNK--LT 471
L+ ++L+ N + L + + L+ L ++ +F+ + N+ L
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345
Query: 472 LDLSFNQI 479
L +S N++
Sbjct: 346 LQISNNRL 353
Score = 69.2 bits (170), Expect = 2e-12
Identities = 57/319 (17%), Positives = 101/319 (31%), Gaps = 64/319 (20%)
Query: 199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK- 257
+++SLDI +S + +L ++ QV+++
Sbjct: 4 DIQSLDIQCEELS--DARW---------------------AELLPLLQQCQVVRLDDCGL 40
Query: 258 --DSLKELPSGLFANLPL----LNTVILGESSIAELPSDLFWNSTNITNIVLT----GHK 307
K++ S L N L L + LG+ + + L S I + L
Sbjct: 41 TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLENI-- 360
L STL R L +L L N L + L E L + L L L+ L
Sbjct: 101 GCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159
Query: 361 ----TSLVGLSGLNSLDLSWNQLEQINLIAF-DGLS----SLNTVDLSHNLLTFDEYQYG 411
+ L L +S N + + + GL L + L +T D +
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219
Query: 412 YSPLKQCVNLETINLSYNRIS-----SLFDDWISSMTSLKELDLRHNNFSFIPDQLDSI- 465
+ +L + L N++ L + + L+ L + + +
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT--AKGCGDLC 277
Query: 466 ----VSNKLT-LDLSFNQI 479
L L L+ N++
Sbjct: 278 RVLRAKESLKELSLAGNEL 296
Score = 46.5 bits (111), Expect = 2e-05
Identities = 21/154 (13%), Positives = 50/154 (32%), Gaps = 21/154 (13%)
Query: 345 KELYTLNLKNNQL--ENITSLV-GLSGLNSLDLSWNQLEQINLI----AFDGLSSLNTVD 397
++ +L+++ +L L+ L + L L + A +L ++
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 398 LSHNLLTFDEYQYGYSPLKQC-VNLETINLSYNRISSLFDDW------ISSMTSLKELDL 450
L N L L+ ++ ++L ++ + ++ +L+EL L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG--AGCGVLSSTLRTLPTLQELHL 120
Query: 451 RHNNFS-----FIPDQLDSIVSNKLTLDLSFNQI 479
N + + L L L + +
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 80.0 bits (198), Expect = 2e-17
Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 17/166 (10%)
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
L + L + L E + L + N N + GLS L L +
Sbjct: 42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKD 99
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN-RISSLFDD 437
+ + GL+SL +D+SH+ + + + +I+LSYN I+ +
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHD----DSILTKINTLPKVNSIDLSYNGAITDIMP- 154
Query: 438 WISSMTSLKELDLRHNNFSFIPDQLDSIVSN--KLT-LDLSFNQIA 480
+ ++ LK L+++ + + + KL L I
Sbjct: 155 -LKTLPELKSLNIQFDGVHDY-----RGIEDFPKLNQLYAFSQTIG 194
Score = 79.6 bits (197), Expect = 3e-17
Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 10/159 (6%)
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
K + L ++ + E + L + L N + ++T + + L ++
Sbjct: 23 KAYLNGLLGQSSTANITE---AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT 79
Query: 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS 440
N GLS+L + + +T D L +L +++S++ I+
Sbjct: 80 NYN--PISGLSNLERLRIMGKDVTSD----KIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 441 SMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
++ + +DL +N L ++ +L++ F+ +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPLKTL-PELKSLNIQFDGV 171
Score = 63.8 bits (156), Expect = 8e-12
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 16/170 (9%)
Query: 268 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 327
A + L + L ++ +L + NI ++ + T+ L +L
Sbjct: 40 EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH-ATNYNP--ISGLSNLERLR 94
Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLEN--ITSLVGLSGLNSLDLSWNQLEQINLI 385
+ + L L L++ ++ ++ +T + L +NS+DLS+N I I
Sbjct: 95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG--AITDI 152
Query: 386 -AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434
L L ++++ + + Y ++ L + I
Sbjct: 153 MPLKTLPELKSLNIQFDGVH------DYRGIEDFPKLNQLYAFSQTIGGK 196
Score = 61.9 bits (151), Expect = 4e-11
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
++ L + T + L+ L + DV LTSL +L++ H+
Sbjct: 66 HNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123
Query: 186 LINLTRAIFNNVPNLRSLDISGNN-ISILPSGVFSDLRKLQTFYANSNR 233
+ N +P + S+D+S N I+ + L +L++ +
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDG 170
Score = 60.4 bits (147), Expect = 1e-10
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
GL ++ + + +T G L L++ ++ + +PK+ +D
Sbjct: 84 ISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
L N D K L L+ LN+ + + + + P L L I
Sbjct: 143 LSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194
Score = 59.6 bits (145), Expect = 3e-10
Identities = 31/229 (13%), Positives = 64/229 (27%), Gaps = 59/229 (25%)
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
LG + A + + SL + L + + +LT N++ L I+ +
Sbjct: 24 AYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHA 78
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
+ S L L+ + + L ++ IS
Sbjct: 79 TNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS---------------- 120
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
+ + +LT K+ ++L
Sbjct: 121 ------------------------HSAHDDSILTK-----------INTLPKVNSIDLSY 145
Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQL 379
N L ++L EL +LN++ + + + + LN L +
Sbjct: 146 NGAITDIMPL-KTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 80.1 bits (198), Expect = 7e-17
Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 18/184 (9%)
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
N L G + +T L S ++ + + ++ L + L L+L +N
Sbjct: 19 ANAVKQNL-GKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN 73
Query: 356 QLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPL 415
Q+ +++ L L+ L L ++ N+L+ +N I LS L L +N L L
Sbjct: 74 QISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELR------DTDSL 124
Query: 416 KQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS 475
NLE +++ N++ S+ + ++ L+ LDL N + L + +DL+
Sbjct: 125 IHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG-LTRLKKVN-WIDLT 180
Query: 476 FNQI 479
+
Sbjct: 181 GQKC 184
Score = 68.1 bits (167), Expect = 8e-13
Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 44/277 (15%)
Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
+ I + D G NL S+T+L S + + +Q + ++++ +
Sbjct: 2 SIQRPTPINQVFPD--PGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA 57
Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
+ T+L+ L+L HNQ+ +L+ ++ L L ++ N + L L
Sbjct: 58 G--MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLN---GIPSACLSR 110
Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286
+ ++N + +K L+++ I +K LK + L L
Sbjct: 111 LFLDNNELRDTDS--LIHLKNLEILSIRNNK--LKSIVM--LGFLSKLEV---------- 154
Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346
L + ITN KK+ ++L K P L
Sbjct: 155 ----LDLHGNEITNT-------------GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197
Query: 347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQIN 383
T+ + + + + + W +
Sbjct: 198 TNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTD 234
Score = 67.7 bits (166), Expect = 1e-12
Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 18/210 (8%)
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
+F + +K + K S+ +L S L + S+I L TN+
Sbjct: 10 NQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNL 65
Query: 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 358
+ L H +++ L +D KL +L + RN+LK L L L+ L NN+L
Sbjct: 66 KELHL-SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELR 119
Query: 359 NITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQC 418
+ SL+ L L L + N+L+ I LS L +DL N +T L +
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT------NTGGLTRL 171
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKEL 448
+ I+L+ + + + + +
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYITNTV 201
Score = 67.7 bits (166), Expect = 1e-12
Identities = 56/264 (21%), Positives = 87/264 (32%), Gaps = 66/264 (25%)
Query: 133 LRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRA 192
R I +++ + +LG V D K L+ ++ N D++ + +L
Sbjct: 4 QRPTPINQVFP--DPGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNIQSLA-- 57
Query: 193 IFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK 252
NL+ L +S N IS L DL KL+ N NR
Sbjct: 58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR------------------- 96
Query: 253 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 312
LK L A L S LF ++ + +
Sbjct: 97 -------LKNLNGIPSACL-----------------SRLFLDNNELRDT----------- 121
Query: 313 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSL 372
K L L ++ NKLK + L +L L+L N++ N L L +N +
Sbjct: 122 --DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177
Query: 373 DLSWNQLEQINLIAFDGLSSLNTV 396
DL+ + + L NTV
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTV 201
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 78.5 bits (194), Expect = 8e-17
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
NK + L K I + L L GN T + L ++DL +N ++ + +
Sbjct: 18 SNKGLKVLPKGIPRDV---TELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQS 73
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
F N+T L L L +N+L + F+ + +LR L + GN+IS++P G F+DL L
Sbjct: 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133
Query: 230 NSN 232
+N
Sbjct: 134 GAN 136
Score = 73.1 bits (180), Expect = 5e-15
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
L L N + P+ N L +++L +N++ L+ F+N+ L +L +S N +
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
+P F L+ L+ + N + P+ F ++ L +
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
Score = 60.4 bits (147), Expect = 1e-10
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 31/145 (21%)
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
LP G+ D+ +L Y + N+F + PK+ + K+L +I +S ++ + L + F+N+
Sbjct: 25 LPKGIPRDVTEL---YLDGNQFTLVPKE-LSNYKHLTLIDLSNNR--ISTLSNQSFSNMT 78
Query: 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 332
L T+IL S N +L +P F K L L L N
Sbjct: 79 QLLTLIL---------------SYN----------RLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 333 LKYLPENLFESLKELYTLNLKNNQL 357
+ +PE F L L L + N L
Sbjct: 114 ISVVPEGAFNDLSALSHLAIGANPL 138
Score = 59.2 bits (144), Expect = 2e-10
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 27/143 (18%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
LK LP G+ ++ L L + +P + N ++T I L + ++++L + F
Sbjct: 21 GLKVLPKGIPRDVTELY---LDGNQFTLVPKE-LSNYKHLTLIDL-SNNRISTLSNQSFS 75
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
+ +L+ L L N+L+ +P F+ LK L L+L N + + G
Sbjct: 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE--G------------- 120
Query: 379 LEQINLIAFDGLSSLNTVDLSHN 401
AF+ LS+L+ + + N
Sbjct: 121 -------AFNDLSALSHLAIGAN 136
Score = 51.9 bits (125), Expect = 8e-08
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 25/100 (25%)
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETI 424
L L NQ + L +DLS+N ++ F L T+
Sbjct: 35 ELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFS----------NMTQLLTL 83
Query: 425 NLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPD 460
LSYNR+ + FD + SL+ L L N+ S +P+
Sbjct: 84 ILSYNRLRCIPPRTFD----GLKSLRLLSLHGNDISVVPE 119
Score = 49.6 bits (119), Expect = 6e-07
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSWNQLEQINLIAF 387
LK LP+ + + ELY L NQ + L L +DLS N++ ++ +F
Sbjct: 18 SNKGLKVLPKGIPRDVTELY---LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 388 DGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNRISSL----FDD 437
++ L T+ LS+N L FD +L ++L N IS + F+D
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGL----------KSLRLLSLHGNDISVVPEGAFND 124
Query: 438 WISSMTSLKELDLRHN 453
+++L L + N
Sbjct: 125 ----LSALSHLAIGAN 136
Score = 40.4 bits (95), Expect = 7e-04
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 415 LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT--- 471
L +L I+LS NRIS+L + S+MT L L L +N IP + + L
Sbjct: 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR----TFDGLKSLR 105
Query: 472 -LDLSFNQI 479
L L N I
Sbjct: 106 LLSLHGNDI 114
Score = 39.2 bits (92), Expect = 0.002
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 572 KPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLE 631
CP C C + V CS+ L +P +P +L L N +
Sbjct: 2 SRCPTECTCLDT------VVRCSNKGLKVLPKGIP-------RDVTELYLDGNQFT-LVP 47
Query: 632 SPPESYKLITDLDLSYNNIS 651
+YK +T +DLS N IS
Sbjct: 48 KELSNYKHLTLIDLSNNRIS 67
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 81.0 bits (201), Expect = 8e-17
Identities = 57/270 (21%), Positives = 102/270 (37%), Gaps = 45/270 (16%)
Query: 196 NVPNLRSLDISGNNIS----ILPSGVFSDLRKLQTFY-ANSNRFQ-MFPKDLFAEMKYLQ 249
+ +LD+SG N+ I S ++L L Y N P + A++ L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSS--LANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLH 104
Query: 250 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 309
+ I++ S +P L + + L T+ D +N+ L+G
Sbjct: 105 YLYITHTNVS-GAIPDFL-SQIKTLVTL------------DFSYNA-------LSG---- 139
Query: 310 TSLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE-NITSLVGLS 367
+LP ++ LV + N++ +P++ K ++ + N+L I
Sbjct: 140 -TLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Query: 368 GLNSLDLSWNQLE-QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
L +DLS N LE + F + + L+ N L FD + NL ++L
Sbjct: 198 NLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFD-----LGKVGLSKNLNGLDL 251
Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFS 456
NRI ++ + L L++ NN
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Score = 80.3 bits (199), Expect = 1e-16
Identities = 44/220 (20%), Positives = 79/220 (35%), Gaps = 49/220 (22%)
Query: 294 NSTNITNIVLTGHKKLT-SLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLN 351
N + + + G L +P + + +L L + + +P+ L +K L TL+
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLD 131
Query: 352 LKNNQLE-NI-TSLVGLSGLNSLDLSWNQL-----EQI----NLIAFDGLS--------- 391
N L + S+ L L + N++ + L +S
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 392 ------SLNTVDLSHNLLTFDEYQYGYSP--LKQCVNLETINLSYNR----ISSLFDDWI 439
+L VDLS N+L G + N + I+L+ N + +
Sbjct: 192 PTFANLNLAFVDLSRNMLE------GDASVLFGSDKNTQKIHLAKNSLAFDLGKV----- 240
Query: 440 SSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQ 478
+L LDLR+N +P L + +L++SFN
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNN 279
Score = 74.5 bits (184), Expect = 1e-14
Identities = 56/269 (20%), Positives = 97/269 (36%), Gaps = 53/269 (19%)
Query: 151 KLQVLDLGSNDVA--YMDPEIFKNLTSLRILNLDHNQLINLTRAI---FNNVPNLRSLDI 205
++ LDL ++ Y P NL L L + NL I + L L I
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN--NLVGPIPPAIAKLTQLHYLYI 108
Query: 206 SGNNIS-ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP 264
+ N+S +P S ++ L T + N LP
Sbjct: 109 THTNVSGAIPDF-LSQIKTLVTLDFSYNALS-------------------------GTLP 142
Query: 265 SGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDCKK 322
+ ++LP L + + I+ +P S T++ + +LT +P T
Sbjct: 143 PSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI-SRNRLTGKIPPTFANL--N 198
Query: 323 LVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE-NITSLVGLSGLNSLDLSWNQL- 379
L ++L RN L+ S K ++L N L ++ + LN LDL N++
Sbjct: 199 LAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257
Query: 380 ----EQINLIAFDGLSSLNTVDLSHNLLT 404
+ + L L+++++S N L
Sbjct: 258 GTLPQGLT-----QLKFLHSLNVSFNNLC 281
Score = 65.6 bits (161), Expect = 1e-11
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 343 SLKELYTLNLKNNQLE---NITSLVG-LSGLNSLDLS-WNQLEQINLIAFDGLSSLNTVD 397
+ L+L L I S + L LN L + N L A L+ L+ +
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 398 LSHNLLTFDEYQYGYSP--LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
++H ++ G P L Q L T++ SYN +S ISS+ +L + N
Sbjct: 108 ITHTNVS------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 456 S-FIPDQLDSIVSNKLTLDLSFNQI 479
S IPD S ++ +S N++
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRL 186
Score = 60.6 bits (148), Expect = 4e-10
Identities = 53/261 (20%), Positives = 91/261 (34%), Gaps = 69/261 (26%)
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAI---FNNVPNLRSLDIS 206
+L L + +V+ P+ + +L L+ +N L+ + +++PNL +
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN---ALSGTLPPSISSLPNLVGITFD 157
Query: 207 GNNIS-ILPSGVFSDLRKLQTF-YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP 264
GN IS +P S KL T + NR
Sbjct: 158 GNRISGAIPDSYGS-FSKLFTSMTISRNRL------------------------------ 186
Query: 265 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 324
+G +P ++A + DL N L G K
Sbjct: 187 TG---KIP----PTFANLNLAFV--DLSRNM-------LEG-----DASVLFGS-DKNTQ 224
Query: 325 KLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE-NI-TSLVGLSGLNSLDLSWNQLE- 380
K+ L +N L L + K L L+L+NN++ + L L L+SL++S+N L
Sbjct: 225 KIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 381 QINLIAFDGLSSLNTVDLSHN 401
+I L + ++N
Sbjct: 283 EI--PQGGNLQRFDVSAYANN 301
Score = 54.5 bits (132), Expect = 4e-08
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 362 SLVGLSGLNSLDLSWNQLEQINLI--AFDGLSSLNTVDLSH-NLLTFDEYQYGYSP--LK 416
+ +N+LDLS L + I + L LN + + N L G P +
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV------GPIPPAIA 98
Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLS 475
+ L + +++ +S D++S + +L LD +N S +P + S+ N + +
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFD 157
Query: 476 FNQI 479
N+I
Sbjct: 158 GNRI 161
Score = 49.8 bits (120), Expect = 1e-06
Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 12/147 (8%)
Query: 94 PPYFDGLHFVKHILLSHNKEITG-LHKDIFKGTPQLESLNLRGNSIT-ELYSGVFQYVPK 151
PP L + I N+ I+G + + S+ + N +T ++
Sbjct: 142 PPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--N 198
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAI--FNNVPNLRSLDISGNN 209
L +DL N + +F + + + ++L N +L + NL LD+ N
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN---SLAFDLGKVGLSKNLNGLDLRNNR 255
Query: 210 IS-ILPSGVFSDLRKLQTFYANSNRFQ 235
I LP G + L+ L + + N
Sbjct: 256 IYGTLPQG-LTQLKFLHSLNVSFNNLC 281
Score = 47.5 bits (114), Expect = 8e-06
Identities = 51/313 (16%), Positives = 94/313 (30%), Gaps = 61/313 (19%)
Query: 70 SKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITG-LHKDIFKGTPQL 128
+ +N L S P L ++ + + + G + I K T QL
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QL 103
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI- 187
L + +++ + L LD N ++ P +L +L + D N++
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 188 NLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
+ + + S+ IS N ++ +P + L + N +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLE----------- 210
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
+ + + L NS L
Sbjct: 211 --------------GDASVLFG-SDKNTQKI------------HLAKNS-------LAF- 235
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE-NITSLV 364
L K L L+L+ N++ LP+ L LK L++LN+ N L I
Sbjct: 236 ----DLGK--VGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQGG 288
Query: 365 GLSGLNSLDLSWN 377
L + + N
Sbjct: 289 NLQRFDVSAYANN 301
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 77.7 bits (192), Expect = 8e-17
Identities = 32/104 (30%), Positives = 51/104 (49%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
L L N + L GVF + +L L L N + + +F LT L IL L N+L +
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
L +F+ + L+ L + N + +P G+F L LQ + ++N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 75.8 bits (187), Expect = 4e-16
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--G 365
KL SLP +F +L KL L +N+++ LP+ +F+ L +L L L N+L+++ + V
Sbjct: 39 KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L+ L L L NQL+ + FD L+SL + L N
Sbjct: 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 69.2 bits (170), Expect = 8e-14
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
L+L SN + + +F LT L L+L NQ+ +L +F+ + L L + N +
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
LP+GVF L +L+ ++N+ + P +F + LQ I
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Score = 65.7 bits (161), Expect = 1e-12
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
K LTS+P+ + +L EL+ NKL+ LP +F+ L +L L+L NQ++++ V
Sbjct: 17 KGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
L+ L L L N+L+ + FD L+ L + L N L
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
Score = 65.4 bits (160), Expect = 2e-12
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
+S L L+ N+L +L +F+ + L L +S N I LP GVF L KL Y + N+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
Q P +F ++ L+ +++ + LK +P G+F L L + L
Sbjct: 88 LQSLPNGVFDKLTQLK--ELALDTNQLKSVPDGIFDRLTSLQKIWL 131
Score = 63.1 bits (154), Expect = 1e-11
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
L NK + L +F QL L+L N I L GVF + KL +L L N + +
Sbjct: 35 LESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
+F LT L+ L LD NQL ++ IF+ + +L+ + + N
Sbjct: 94 GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 58.8 bits (143), Expect = 3e-10
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 256 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 315
+ L+ LP G+F L L + L ++ I LP +F T +T + L KL SLP+
Sbjct: 36 ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL-HENKLQSLPNG 94
Query: 316 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
+F +L +L L N+LK +P+ +F+ L L + L N
Sbjct: 95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135
Score = 38.4 bits (90), Expect = 0.003
Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 50/119 (42%)
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNR 430
L+L N+L+ + FD L L ++LS N+
Sbjct: 32 RLELESNKLQSLPHGVFDKL----------------------------TQLTKLSLSQNQ 63
Query: 431 ISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDSI---VSNKLT----LDLSFNQ 478
I SL FD +T L L L N +L S+ V +KLT L L NQ
Sbjct: 64 IQSLPDGVFD----KLTKLTILYLHEN-------KLQSLPNGVFDKLTQLKELALDTNQ 111
Score = 34.9 bits (81), Expect = 0.041
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CP+RC C+ + + C+S LT +P +P + +L L +N +
Sbjct: 1 CPSRCSCSGT------EIRCNSKGLTSVPTGIPSSAT-------RLELESNKLQSLPHGV 47
Query: 634 PESYKLITDLDLSYN 648
+ +T L LS N
Sbjct: 48 FDKLTQLTKLSLSQN 62
Score = 30.3 bits (69), Expect = 1.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL-DSIVSNKLT-LDLSF 476
+ + L N++ SL +T L +L L N +PD + D + KLT L L
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT--KLTILYLHE 85
Query: 477 NQ 478
N+
Sbjct: 86 NK 87
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 77.3 bits (191), Expect = 1e-16
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 129 ESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
L L N + + S G+F +P L L+L N + ++P F+ + ++ L L N++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
++ +F + L++L++ N IS + G F L L + SN
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 69.3 bits (170), Expect = 1e-13
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 153 QVLDLGSNDVAYMDPE-IFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
L L N++ + + +F L L L L NQL + F +++ L + N I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
+ + +F L +L+T N+ F + L +
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131
Score = 68.5 bits (168), Expect = 2e-13
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 106 ILLSHNKEITGLHKD-IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAY 164
LL ++ E+ + D +F P L L L+ N +T + F+ +Q L LG N +
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
+ ++F L L+ LNL NQ+ + F ++ +L SL+++ N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 62.7 bits (153), Expect = 2e-11
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 27/144 (18%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSD-LFWNSTNITNIVLTGHKKLTSLPSTLF 317
LKE+P + + L L ++ + + SD LF ++ + L +LT + F
Sbjct: 19 GLKEIPRDIPLHTTELL---LNDNELGRISSDGLFGRLPHLVKLEL-KRNQLTGIEPNAF 74
Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWN 377
+ +L+L NK+K + +F L +L TLNL +NQ+ + G
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP--G------------ 120
Query: 378 QLEQINLIAFDGLSSLNTVDLSHN 401
+F+ L+SL +++L+ N
Sbjct: 121 --------SFEHLNSLTSLNLASN 136
Score = 51.5 bits (124), Expect = 1e-07
Identities = 32/157 (20%), Positives = 47/157 (29%), Gaps = 58/157 (36%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQLENITSLV- 364
+ L +P + +L L N+L + + LF L L L LK NQL I
Sbjct: 18 RGLKEIPRDIPLHTTEL---LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74
Query: 365 -GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLET 423
G S + L L N++++I+ F GL
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLGL--------------------------------- 101
Query: 424 INLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPD 460
LK L+L N S +
Sbjct: 102 -------------------HQLKTLNLYDNQISCVMP 119
Score = 51.2 bits (123), Expect = 1e-07
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 30/138 (21%)
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENITS---LVGLSGLNSLDLSWNQLEQINLI 385
LK +P ++ EL L +N+L I+S L L L+L NQL I
Sbjct: 16 TGRGLKEIPRDIPLHTTELL---LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 386 AFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNRISSL----F 435
AF+G S + + L N + F L+T+NL N+IS + F
Sbjct: 73 AFEGASHIQELQLGENKIKEISNKMFLGL----------HQLKTLNLYDNQISCVMPGSF 122
Query: 436 DDWISSMTSLKELDLRHN 453
+ + SL L+L N
Sbjct: 123 E----HLNSLTSLNLASN 136
Score = 41.9 bits (99), Expect = 2e-04
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
+ P F+G ++ + L NK I + +F G QL++LNL N I+ + G F+++
Sbjct: 69 IEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 152 LQVLDLGSN 160
L L+L SN
Sbjct: 128 LTSLNLASN 136
Score = 41.5 bits (98), Expect = 3e-04
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 46/168 (27%)
Query: 416 KQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT---- 471
+ +L + L N+++ + + + ++EL L N I ++ + L
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK----MFLGLHQLKT 106
Query: 472 LDLSFNQIAIV------DLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYD 525
L+L NQI+ V L +L + L NP CNC
Sbjct: 107 LNLYDNQISCVMPGSFEHLNSLT--------------------SLNLASNPFNCNCHLAW 146
Query: 526 LIRFVSKKMTKTVYQMLELVTDNLECFGNA---GVGINSVRPENLTCD 570
++ KK L C + V I + C
Sbjct: 147 FAEWLRKK---------SLNGGAARCGAPSKVRDVQIKDLPHSEFKCS 185
Score = 40.0 bits (94), Expect = 0.001
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CPA C+C + +V+C+ L +P +P+ + L+L++N + + S
Sbjct: 2 CPAMCHCEGT------TVDCTGRGLKEIPRDIPLHTTE-------LLLNDNELGR-ISSD 47
Query: 634 PESYKL--ITDLDLSYNNIS 651
+L + L+L N ++
Sbjct: 48 GLFGRLPHLVKLELKRNQLT 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 79.9 bits (197), Expect = 2e-16
Identities = 35/193 (18%), Positives = 56/193 (29%), Gaps = 21/193 (10%)
Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
N+ N+ L L L + + L TL+L +N
Sbjct: 127 NLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184
Query: 357 LENITSLV------GLSGLNSLDLSWNQLEQINLIA---FDGLSSLNTVDLSHNLLTFDE 407
L+ L L L +E + + L +DLSHN L
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244
Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS 467
L ++NLS+ + + + L LDL +N P +
Sbjct: 245 GAPSCDWPS---QLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPSPDE---L 295
Query: 468 NKLT-LDLSFNQI 479
++ L L N
Sbjct: 296 PQVGNLSLKGNPF 308
Score = 79.6 bits (196), Expect = 2e-16
Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 17/235 (7%)
Query: 262 ELPSGLFANLPLLNTV--ILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 319
EL G + LL V ++ L + + +L
Sbjct: 37 ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR---VLG 93
Query: 320 CKKLVKLELQRNKL--KYLPENLFESLKELYTLNLKNNQLENITSLVG------LSGLNS 371
L +L L+ ++ P L + +L LNL+N + + GL
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
L ++ + +L+T+DLS N + + L+ + L +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 432 SSLFDDW---ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL-TLDLSFNQIAIV 482
+ ++ L+ LDL HN+ ++L +L+LSF + V
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268
Score = 73.8 bits (181), Expect = 2e-14
Identities = 49/297 (16%), Positives = 90/297 (30%), Gaps = 41/297 (13%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSG---VFQYVPKLQ 153
+ G ++++L + E + L+ L +R I + LQ
Sbjct: 39 YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98
Query: 154 VLDLGSNDVAYMDP-----EIFKNLTSLRILNLDHNQLINLTRAIFNNV-PNLRSLDISG 207
L L + +V P +L L + N+ + + P L+ L I+
Sbjct: 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158
Query: 208 NNISILPSGVFSDLRKLQTFYANSNRFQ----MFPKDLFAEMKYLQVIKISY-HKDSLKE 262
+ L T + N + + LQV+ + ++
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218
Query: 263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 322
+ S L A L + L +S+ + + +
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAA------------------------GAPSCDWPSQ 254
Query: 323 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQL 379
L L L LK +P+ L L L+L N+L+ S L + +L L N
Sbjct: 255 LNSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308
Score = 69.5 bits (170), Expect = 5e-13
Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 11/206 (5%)
Query: 54 TFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKE 113
T +P L I+ + L N P + + L +
Sbjct: 74 TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133
Query: 114 ITG---LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN----DVAYMD 166
T L + P L+ L++ + P L LDL N + +
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193
Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAI---FNNVPNLRSLDISGNNIS-ILPSGVFSDLR 222
+L++L L + + + L+ LD+S N++ +
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253
Query: 223 KLQTFYANSNRFQMFPKDLFAEMKYL 248
+L + + + PK L A++ L
Sbjct: 254 QLNSLNLSFTGLKQVPKGLPAKLSVL 279
Score = 51.1 bits (122), Expect = 5e-07
Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 6/130 (4%)
Query: 60 LPDENFISLFSKLNITTINTLAFS-NSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLH 118
L + IS L T+ LA + ++ + LSHN
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI 178
QL SLNL + ++ G+ KL VLDL N + L +
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPSPDE--LPQVGN 300
Query: 179 LNLDHNQLIN 188
L+L N ++
Sbjct: 301 LSLKGNPFLD 310
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 75.1 bits (185), Expect = 1e-15
Identities = 33/163 (20%), Positives = 74/163 (45%), Gaps = 9/163 (5%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ 381
+ V+L ++ + L +LK L L N +E I+SL G+ L L L N +++
Sbjct: 26 EKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK 84
Query: 382 INLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-DWIS 440
I + +L + +S+N + +++ VNL + +S N+I++ + D ++
Sbjct: 85 IENL-DAVADTLEELWISYNQIASLS------GIEKLVNLRVLYMSNNKITNWGEIDKLA 137
Query: 441 SMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD 483
++ L++L L N + ++ ++ + + +D
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
Score = 59.3 bits (144), Expect = 3e-10
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 320 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQL 379
+ L L L RN +K + ENL L L + NQ+ +++ + L L L +S N++
Sbjct: 69 MENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127
Query: 380 EQIN-LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP 414
+ L L + L+ N L D + +
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163
Score = 57.4 bits (139), Expect = 1e-09
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
+ L+ I ++ + + + L L +N++ + + +LRIL+L N
Sbjct: 24 EAEKVELHGMIPPIEKMDATLSTL-KACKHLALSTNNIEKISS--LSGMENLRILSLGRN 80
Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
+ + + L L IS N I+ L L L+ Y ++N+
Sbjct: 81 LIKKIE-NLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNK 126
Score = 51.2 bits (123), Expect = 2e-07
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 7/142 (4%)
Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
L I + + + L L N+I ++ S + + L++L LG N + ++
Sbjct: 30 LHGMIPPIEKMDATL-STLKACKHLALSTNNIEKI-SSL-SGMENLRILSLGRNLIKKIE 86
Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQ 225
+ +L L + +NQ+ +L+ + NLR L +S N I+ + L KL+
Sbjct: 87 N-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143
Query: 226 TFYANSNRFQMFPKDLFAEMKY 247
N K+ A +Y
Sbjct: 144 DLLLAGNPLYNDYKENNATSEY 165
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 79.4 bits (195), Expect = 1e-15
Identities = 46/265 (17%), Positives = 86/265 (32%), Gaps = 17/265 (6%)
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
LP+ +D TF + + + + + S + L +
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE-K 360
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR-------DCKKL 323
+L + + + EL + W I +++ L TL D +
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTII-LLMRALDPLLYEKETLQYFSTLKAVDPMRA 419
Query: 324 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQIN 383
L+ R+K L ++ L+L + L + L L + LDLS N+L +
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP 479
Query: 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-DWISSM 442
A L L + S N L + + L+ + L NR+ + S
Sbjct: 480 -PALAALRCLEVLQASDNALENVD------GVANLPRLQELLLCNNRLQQSAAIQPLVSC 532
Query: 443 TSLKELDLRHNNFSFIPDQLDSIVS 467
L L+L+ N+ + +
Sbjct: 533 PRLVLLNLQGNSLCQEEGIQERLAE 557
Score = 78.3 bits (192), Expect = 3e-15
Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 12/258 (4%)
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
L L + I+ S + L ++ R + L ++S
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE-QLFRCELSVEKS 361
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
++L S ++LQ + + L + L Y K++L+ S L A
Sbjct: 362 TVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLL-----YEKETLQYF-STLKAV 414
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
P+ + S L + + ++ HK LT L + L+L
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSH 472
Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQI-NLIAFDG 389
N+L+ LP L +L+ L L +N LEN+ + L L L L N+L+Q +
Sbjct: 473 NRLRALPPAL-AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531
Query: 390 LSSLNTVDLSHNLLTFDE 407
L ++L N L +E
Sbjct: 532 CPRLVLLNLQGNSLCQEE 549
Score = 66.3 bits (161), Expect = 2e-11
Identities = 29/170 (17%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDL 374
+ CK+L +LE + + ++ L L + L+ ++L + + + L
Sbjct: 366 SELESCKELQELEPENKWCLL---TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422
Query: 375 SWNQLEQI--NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432
+ + + N + + + + L+H LT + L+Q + + ++LS+NR+
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH------LEQLLLVTHLDLSHNRLR 476
Query: 433 SLFDDWISSMTSLKELDLRHNNFSFIP--DQLDSIVSNKLTLDLSFNQIA 480
+L ++++ L+ L N + L + L L N++
Sbjct: 477 AL-PPALAALRCLEVLQASDNALENVDGVANLPRLQ----ELLLCNNRLQ 521
Score = 63.6 bits (154), Expect = 1e-10
Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 6/155 (3%)
Query: 62 DENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDI 121
++ + FS L A+ + + +L + +L +K++T L
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CH 458
Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181
+ + L+L N + L + L+VL N + +D NL L+ L L
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELLL 515
Query: 182 DHNQLINLTR-AIFNNVPNLRSLDISGNNISILPS 215
+N+L + P L L++ GN++
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Score = 32.4 bits (73), Expect = 0.59
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 97 FDGLHFVKHILLSHNKEITGL-HKDIFKGTPQLESLNLRGNSITEL--YSG-VFQYVPKL 152
L ++ +LL +N+ + P+L LNL+GNS+ + + + +P +
Sbjct: 504 VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
Query: 153 QVLD 156
+
Sbjct: 563 SSIL 566
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 77.1 bits (189), Expect = 2e-15
Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 93 SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152
S + G + + + + + + L +G +L +L + + + + F + P+L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
L+L N + + + + L SL+ L L N L
Sbjct: 83 SRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
Score = 72.5 bits (177), Expect = 7e-14
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 146 FQYVPKLQVLDLGSN-DVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD 204
L L + + + +++ + L LR L + + L + F+ P L L+
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 205 ISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
+S N + L L LQ + N
Sbjct: 87 LSFNALESLSWKTVQGL-SLQELVLSGNPLH 116
Score = 69.8 bits (170), Expect = 7e-13
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 167 PEIFKNLTSLRILNLDHNQLI-NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225
+L L +++ Q + +L + LR+L I + + + F +L
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83
Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKIS 254
+ N + + LQ + +S
Sbjct: 84 RLNLSFNALESLSWKTVQGLS-LQELVLS 111
Score = 63.6 bits (154), Expect = 7e-11
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Query: 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQL 357
++ + + L +L ++ + L++L L EL L + + L
Sbjct: 10 SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68
Query: 358 ENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
+ + L+ L+LS+N LE ++ GL SL + LS N L
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCS 118
Score = 61.7 bits (149), Expect = 2e-10
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 352 LKNNQLENITSLVGLSGLNSLDLS-WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY 410
++ L+++ L G L L + L+ + L GL L + + + L F
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD- 74
Query: 411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
L +NLS+N + SL + + SL+EL L N
Sbjct: 75 ---AFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
Score = 60.5 bits (146), Expect = 5e-10
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 3/88 (3%)
Query: 194 FNNVPNLRSLDISGNN-ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK 252
NL L I + L L +L+ + + D F L +
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 253 ISYHKDSLKELPSGLFANLPLLNTVILG 280
+S++ L+ L L L V+ G
Sbjct: 87 LSFNA--LESLSWKTVQGLSLQELVLSG 112
Score = 59.0 bits (142), Expect = 2e-09
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
+ N+T + + + L L R +L L + ++ L+++ + F L LN
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 352 LKNNQLENI--TSLVGLSGLNSLDLSWNQL 379
L N LE++ ++ GLS L L LS N L
Sbjct: 87 LSFNALESLSWKTVQGLS-LQELVLSGNPL 115
Score = 58.6 bits (141), Expect = 3e-09
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 320 CKKLVKLELQRNKLKYLPENL--FESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLS 375
L R+ +L E+L ELY N L+++ L GL L +L +
Sbjct: 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIEN--QQHLQHLELRDLRGLGELRNLTIV 64
Query: 376 WNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
+ L + AF L+ ++LS N L
Sbjct: 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALE 93
Score = 56.3 bits (135), Expect = 1e-08
Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 16/129 (12%)
Query: 415 LKQCVNLETINLSYNR-ISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLD 473
L NL + + + + L + + L+ L + + F+ L+
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 474 LSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKK 533
LSFN + + +T++ S ++L+ NP+ C+C+ L R+ +
Sbjct: 87 LSFNALESLSWKTVQ---------------GLSLQELVLSGNPLHCSCALRWLQRWEEEG 131
Query: 534 MTKTVYQML 542
+ Q L
Sbjct: 132 LGGVPEQKL 140
Score = 38.2 bits (88), Expect = 0.008
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQ--LILHNNSINHFLE 631
CP C + + C+ +LP A ++ I + + H
Sbjct: 1 CPDACCP-----HGSSGLRCTRDGALDSLHHLP------GAENLTELYIENQQHLQHLEL 49
Query: 632 SPPESYKLITDLDLSYNNISHVDT-MYPYLNHLELID 667
+ +L + + + V + + L ++
Sbjct: 50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 70.8 bits (174), Expect = 2e-14
Identities = 24/139 (17%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
+ + + +L+L+ K+ + ENL +L + ++ +N++ + L L +L ++
Sbjct: 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN 73
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
N++ +I L L + L++N L + L +L + + N +++
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDP----LASLKSLTYLCILRNPVTNKK 129
Query: 436 DDW---ISSMTSLKELDLR 451
I + ++ LD +
Sbjct: 130 HYRLYVIYKVPQVRVLDFQ 148
Score = 65.1 bits (159), Expect = 2e-12
Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 10/133 (7%)
Query: 350 LNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQ 409
+ L +E LDL ++ I + L + +D S N + +
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG- 59
Query: 410 YGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNK 469
L+T+ ++ NRI + + ++ L EL L +N+ + D LD + S K
Sbjct: 60 -----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD-LDPLASLK 113
Query: 470 L--TLDLSFNQIA 480
L + N +
Sbjct: 114 SLTYLCILRNPVT 126
Score = 58.9 bits (143), Expect = 2e-10
Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 97 FDGLHFVKHILLSHNK--EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154
+ + + L K I L + Q ++++ N I +L F + +L+
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGATL----DQFDAIDFSDNEIRKL--DGFPLLRRLKT 68
Query: 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISIL 213
L + +N + + + + L L L L +N L+ L ++ +L L I N ++
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128
Query: 214 P 214
Sbjct: 129 K 129
Score = 58.5 bits (142), Expect = 4e-10
Identities = 20/101 (19%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
+ L+LRG I + + + + +D N++ + + F L L+ L +++N++
Sbjct: 20 RDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI 76
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
+ + +P+L L ++ N++ L DL L +
Sbjct: 77 CRIGEGLDQALPDLTELILTNNSLVEL-----GDLDPLASL 112
Score = 50.8 bits (122), Expect = 1e-07
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
+ L I + + + + LDL + ++ + L ++ N++ L
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD 58
Query: 191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
F + L++L ++ N I + G+ L L +N
Sbjct: 59 --GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99
Score = 43.1 bits (102), Expect = 7e-05
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 27/111 (24%)
Query: 97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
F L +K +L+++N+ I + + + + P L L L NS+ EL
Sbjct: 60 FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVEL--------------- 103
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT---RAIFNNVPNLRSLD 204
D+ + +L SL L + N + N + VP +R LD
Sbjct: 104 ---GDL-----DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
Score = 42.0 bits (99), Expect = 2e-04
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 32/153 (20%)
Query: 154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISIL 213
++ L + + + N R L+L + I + + + ++D S N I L
Sbjct: 1 MVKLTAELIE--QAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL 57
Query: 214 PSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL 273
F LR+L+T N+NR + + GL LP
Sbjct: 58 DG--FPLLRRLKTLLVNNNR--------------------------ICRIGEGLDQALPD 89
Query: 274 LNTVILGESSIAELPS-DLFWNSTNITNIVLTG 305
L +IL +S+ EL D + ++T + +
Sbjct: 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILR 122
Score = 30.4 bits (69), Expect = 1.1
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 619 LILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMY-----PYLNHLELID 667
L+++NN I E ++ +T+L L+ N++ + + L +L ++
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122
Score = 29.2 bits (66), Expect = 2.7
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD 483
L+ I ++ +ELDLR I + L + + +D S N+I +D
Sbjct: 3 KLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLD 58
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 67.3 bits (165), Expect = 3e-13
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
K L S+P+ + + L L N++ L +F+ L +L L+L NNQL + + V
Sbjct: 19 KSLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L+ L L L+ NQL+ I AFD L SL + L +N
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 58.4 bits (142), Expect = 3e-10
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
QVL L N + ++P +F LT L L+LD+NQL L +F+ + L L ++ N +
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 213 LPSGVFSDLRKLQTFYANSN 232
+P G F +L+ L + +N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 56.5 bits (137), Expect = 2e-09
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
T+ ++L L NQ+ L +F+ + L LD+ N +++LP+GVF L +L N N+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 234 FQMFPKDLFAEMKYLQVI 251
+ P+ F +K L I
Sbjct: 90 LKSIPRGAFDNLKSLTHI 107
Score = 52.6 bits (127), Expect = 3e-08
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
SL +P+G+ +L L ++ I +L +F T +T + L + +LT LP+ +F
Sbjct: 20 SLASVPTGIPTTTQVLY---LYDNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFD 75
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
+L +L L N+LK +P F++LK L + L NN
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 42.6 bits (101), Expect = 9e-05
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
L N+ IT L +F QL L+L N +T L +GVF + +L L L N + +
Sbjct: 37 LYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95
Query: 168 EIFKNLTSLRILNLDHN 184
F NL SL + L +N
Sbjct: 96 GAFDNLKSLTHIWLLNN 112
Score = 34.5 bits (80), Expect = 0.049
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 25/93 (26%)
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETIN 425
L L NQ+ ++ FD L+ L +DL +N LT FD + L ++
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD----------KLTQLTQLS 84
Query: 426 LSYNRISSL----FDDWISSMTSLKELDLRHNN 454
L+ N++ S+ FD ++ SL + L NN
Sbjct: 85 LNDNQLKSIPRGAFD----NLKSLTHIWL-LNN 112
Score = 34.1 bits (79), Expect = 0.062
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CP++C C+ + +V+CS SL +P +P T + L L++N I
Sbjct: 3 CPSQCSCSGT------TVDCSGKSLASVPTGIPTTTQ-------VLYLYDNQITKL---E 46
Query: 634 P---ESYKLITDLDLSYN 648
P + +T LDL N
Sbjct: 47 PGVFDRLTQLTRLDLDNN 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 4e-13
Identities = 92/607 (15%), Positives = 184/607 (30%), Gaps = 152/607 (25%)
Query: 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILP 214
+D + + Y +I + N D + ++ ++I + +D +I +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK----EEID----HIIMSK 58
Query: 215 SGVFSDLRKLQTFYA-NSNRFQMFPKDLFAEMKYLQVIKISYHKDSL-KELPSGLFANL- 271
V LR T + Q F +++ + Y + + + + + ++
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINY-KFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 272 -PLLNTV-------ILGESSIAELPSDLFWNSTNITNIVLTGHK---KLTSLPSTLFRDC 320
L N + +L L N+++ G K T + +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGK-TWVALDVCLSY 174
Query: 321 KKLVKLELQRNKLKYL-------PENLFESLKELYTLNLKN-NQLENITSLVGLSGLNSL 372
K K++ K+ +L PE + E L++L N + +S + L ++S+
Sbjct: 175 KVQCKMD---FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSI 230
Query: 373 D------LSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
L E L+ + + + F+ C L T
Sbjct: 231 QAELRRLLKSKPYEN-CLLVLLNVQNAKAWN------AFN---------LSCKILLT--- 271
Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRT 486
R + D ++ T + L H++ + PD++ S++ L DL
Sbjct: 272 --TRFKQVTDFLSAATT--THISLDHHSMTLTPDEVKSLLLKYLDCRPQ-------DL-- 318
Query: 487 LEIKAAAQDPNEDST-------MVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVY 539
P E T ++A S + D N+ + K+T +
Sbjct: 319 ---------PREVLTTNPRRLSIIAES-----IRDGL--ATWDNWKHVNC--DKLTTIIE 360
Query: 540 QMLELVTDNL--ECFGNAGVGINSVRPENLTCDTKPCPARCYCNF---SPYYSIMSV--N 592
L ++ + F SV P + P +M V
Sbjct: 361 SSLNVLEPAEYRKMFDRL-----SVFPPSA-----HIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 593 CSSASLT--HMPD---YLPVTYEDKKATSIQLI-LHNNSINHFLESPPESYKLITDLDLS 646
SL + +P Y + K LH + ++H Y + D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH--------YNIPKTFDSD 462
Query: 647 YNNISHVDT-MYPYLN-HLELID------------------SEKIICHGSTKPLNGILLK 686
++D Y ++ HL+ I+ +KI + +G +L
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 687 NIQNTKT 693
+Q K
Sbjct: 523 TLQQLKF 529
Score = 45.6 bits (107), Expect = 6e-05
Identities = 58/375 (15%), Positives = 108/375 (28%), Gaps = 125/375 (33%)
Query: 62 DENFISLF---SKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLH 118
+ + F K+ +TT LS HI L H+ L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFK-------QVTDFLSAAT------TTHISLDHHSM--TLT 299
Query: 119 KDIFKGTPQLESLNL----RGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLT 174
D E +L +L P+ +VL + + E ++
Sbjct: 300 PD--------EVKSLLLKYLDCRPQDL--------PR-EVLT-TNPRRLSIIAESIRDGL 341
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
+ N H LT I + S +++L ++ RK+ + +R
Sbjct: 342 A-TWDNWKHVNCDKLTTII----------ESS---LNVLEP---AEYRKM---F---DRL 378
Query: 235 QMFPKDL----------FAEMKYLQVIKI--SYHKDSL--KELPSGLFANLPLLNTVILG 280
+FP + ++ V+ + HK SL K+
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI------------ 426
Query: 281 ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL 340
SI + +L N + H+ + ++ + ++L
Sbjct: 427 --SIPSIYLELKVKLENEYAL----HRSI----------------VDHYNIPKTFDSDDL 464
Query: 341 FESLKELYTLN-----LKN-NQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN 394
+ Y + LKN E +T + LD + LEQ I D +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV----FLDFRF--LEQ--KIRHDSTAWNA 516
Query: 395 TVDLSHNLLTFDEYQ 409
+ + + L Y+
Sbjct: 517 SGSILNTLQQLKFYK 531
Score = 33.3 bits (75), Expect = 0.35
Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 55/182 (30%)
Query: 96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLR----GNSITEL----YSGVFQ 147
++ L + LH+ I ++ N+ + + Y +
Sbjct: 427 SIPSIYLE---LKVKLENEYALHRSI------VDHYNIPKTFDSDDLIPPYLDQY--FYS 475
Query: 148 YVPKLQVLDLGSNDVAY-MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNV----PNLRS 202
+ + + + N++H + + L R +F + +R
Sbjct: 476 H-------------IGHHLK-------------NIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 203 LDISGNNISILPSGVFSDLRKLQTFYA-NSNRFQMFPKDL--FAEMKYLQVIKISYHKDS 259
+ N + + L+ + + N +++ + F K + + S + D
Sbjct: 510 DSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERLVNAILDFL-PKIEENLICSKYTDL 567
Query: 260 LK 261
L+
Sbjct: 568 LR 569
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 66.1 bits (162), Expect = 7e-13
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
+L S+P+ + D ++L L N++ L +F+ L L L +N+L I + V
Sbjct: 22 IRLASVPAGIPTDKQRL---WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L+ L LDL+ N L+ I AFD L SL + L +N
Sbjct: 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 57.6 bits (140), Expect = 7e-10
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
+ L L N IT+L GVF ++ LQ L SN + + +F LT L L+L+ N L +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 189 LTRAIFNNVPNLRSLDISGN 208
+ R F+N+ +L + + N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 57.6 bits (140), Expect = 7e-10
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
Q L L +N + ++P +F +L +L+ L + N+L + +F+ + L LD++ N++
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 213 LPSGVFSDLRKLQTFYANSN 232
+P G F +L+ L Y +N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 55.7 bits (135), Expect = 3e-09
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
T + L L++NQ+ L +F+++ NL+ L + N ++ +P+GVF L +L N N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 234 FQMFPKDLFAEMKYLQVI 251
+ P+ F +K L I
Sbjct: 93 LKSIPRGAFDNLKSLTHI 110
Score = 53.4 bits (129), Expect = 2e-08
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
L +P+G+ + L L + I +L +F + N+ + KLT++P+ +F
Sbjct: 23 RLASVPAGIPTDKQRLW---LNNNQITKLEPGVFDHLVNLQQLYF-NSNKLTAIPTGVFD 78
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
+L +L+L N LK +P F++LK L + L NN
Sbjct: 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 42.2 bits (100), Expect = 1e-04
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
L++N+ IT L +F L+ L N +T + +GVF + +L LDL N + +
Sbjct: 40 LNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR 98
Query: 168 EIFKNLTSLRILNLDHN 184
F NL SL + L +N
Sbjct: 99 GAFDNLKSLTHIYLYNN 115
Score = 33.8 bits (78), Expect = 0.089
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 25/94 (26%)
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETI 424
L L+ NQ+ ++ FD L +L + + N LT FD + L +
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD----------KLTQLTQL 86
Query: 425 NLSYNRISSL----FDDWISSMTSLKELDLRHNN 454
+L+ N + S+ FD ++ SL + L +NN
Sbjct: 87 DLNDNHLKSIPRGAFD----NLKSLTHIYL-YNN 115
Score = 33.4 bits (77), Expect = 0.11
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 13/53 (24%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSI 626
CP++C C+ + VNC + L +P +P + +L L+NN I
Sbjct: 6 CPSQCSCDQT------LVNCQNIRLASVPAGIPTDKQ-------RLWLNNNQI 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 68.4 bits (167), Expect = 3e-12
Identities = 65/407 (15%), Positives = 135/407 (33%), Gaps = 50/407 (12%)
Query: 126 PQLESLNLRG-NSITELY-SGVFQYVPKLQVLDLGSNDVAYMDP----EIFKNLTSLRIL 179
LE+L L + T + + K++ L + + + D E+ ++ TSL +L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197
Query: 180 NLDHNQLINLT----RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
N + ++ I N +L S+ + I + G F L+ F S
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNED 256
Query: 236 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL-GESSIAELPSDLFWN 294
+ + + + + + + LF + + L E L
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN------------LFE 342
N+ + L L + CK+L +L ++R + E+ L +
Sbjct: 317 CPNLEVLETRNVIGDRGL-EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375
Query: 343 SLKELYTLNLKNNQLEN------ITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL--N 394
+EL + + + + N T L L + L + +L +G+ SL
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD-REERITDLPLDNGVRSLLIG 434
Query: 395 TVDLSHNLLTFDEYQYGYSPLKQ----CVNLETINLSYNRISSLFDDWI----SSMTSLK 446
L + L N+ + L Y S D+ + +L+
Sbjct: 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES---DEGLMEFSRGCPNLQ 491
Query: 447 ELDLRHNNFSFIPDQLDSIVSN--KLT-LDLSFNQIAIVDLRTLEIK 490
+L++R FS + + V+ L L + + ++ +++
Sbjct: 492 KLEMRGCCFS--ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536
Score = 53.8 bits (129), Expect = 1e-07
Identities = 50/446 (11%), Positives = 126/446 (28%), Gaps = 92/446 (20%)
Query: 55 FTFCPLPDENFISLFSKLNIT-------------------TINTLAFSNSPSNVGVLSPP 95
+ D+ + + + T + + +
Sbjct: 11 LSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSR 70
Query: 96 YFDGLHFVKHILLSHNKEITGLH--------------KDIFKGTPQLESLNLRGNSIT-- 139
F L + + L + +I QL+S++ R ++
Sbjct: 71 RFPNL---RSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL 127
Query: 140 ELYSGVFQYVPKLQVLDLGS----NDVAYMDPEIFKNLTSLRILNLDHNQLINLT----R 191
+L L+ L L + I + ++ L ++ +
Sbjct: 128 DLDRLAKARADDLETLKLDKCSGFTTDGLL--SIVTHCRKIKTLLMEESSFSEKDGKWLH 185
Query: 192 AIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
+ + +L L+ + + DL + + L +
Sbjct: 186 ELAQHNTSLEVLNFYMTEFAKIS---PKDLET-----------------IARNCRSLVSV 225
Query: 252 KISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS 311
K+ + G F L G + + + N + G +
Sbjct: 226 KVGDFEIL---ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282
Query: 312 LP-STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLN 370
LF ++ KL+L L E+ +++ L ++ +++G GL
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALL--ETEDHCTLIQKCPNL-----EVLETRNVIGDRGLE 335
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNR 430
L QL+++ + + + ++ L++ + + C LE + + +
Sbjct: 336 VLAQYCKQLKRLRI---ERGADEQGMEDEEGLVSQRGLI---ALAQGCQELEYMAVYVSD 389
Query: 431 ISSLFDDWISSMTS----LKELDLRH 452
I+ ++ + S+ + L + L
Sbjct: 390 IT---NESLESIGTYLKNLCDFRLVL 412
Score = 48.8 bits (116), Expect = 5e-06
Identities = 53/327 (16%), Positives = 99/327 (30%), Gaps = 30/327 (9%)
Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN 180
I + L S+ + I EL G F+ L+ GS + PE + NL R L
Sbjct: 215 IARNCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273
Query: 181 LDHNQLINLT--RAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQMF 237
+ +F +R LD+ + + L+ +
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG 333
Query: 238 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 297
+ L K L+ ++I D + L + G + + ++ + +
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM--AVYVS--D 389
Query: 298 ITNIVL----TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
ITN L T K L L +++ L L +L K+L
Sbjct: 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-----GVRSLLIGCKKLRRFAFY 444
Query: 354 NNQ-------LENITSLVGLSGLNSLDLSWNQLEQINLIAF-DGLSSLNTVDLSHNLLTF 405
Q L I + + L + L+ F G +L +++ +
Sbjct: 445 LRQGGLTDLGLSYIGQ--YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502
Query: 406 DEYQYGYSPLKQCVNLETINLSYNRIS 432
+ + +L + + R S
Sbjct: 503 RAIAAA---VTKLPSLRYLWVQGYRAS 526
Score = 48.4 bits (115), Expect = 6e-06
Identities = 60/345 (17%), Positives = 125/345 (36%), Gaps = 61/345 (17%)
Query: 170 FKNLTSLRILNLDHNQLINLT------------RAIFNNVPNLRSLDISGNNISILPSGV 217
F NL SL++ + NL I NN+ L+S+ +S
Sbjct: 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS------ 125
Query: 218 FSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTV 277
DL +L A L+ +K+ + + + + T+
Sbjct: 126 DLDLDRL----------------AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169
Query: 278 ILGESSIAELP----SDLFWNSTNIT--NIVLTGHKKLTSLP-STLFRDCKKLVKLELQR 330
++ ESS +E +L ++T++ N +T K++ T+ R+C+ LV +++
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229
Query: 331 NKLKYLPE--NLFESLKELYTLNLKNNQ--LENITSLVGLSGLNSLDLSWNQLEQINLIA 386
++ L +L+E +L + E +LV L L LS+ ++ ++
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL- 288
Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
F + + +DL + LL ++ + +++C NLE + + LK
Sbjct: 289 FPFAAQIRKLDLLYALLETED---HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345
Query: 447 ELDLRHNNFSFIPDQLDSIVSNK------------LTLDLSFNQI 479
L + + + +VS + + + + I
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390
Score = 42.6 bits (100), Expect = 3e-04
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 14/125 (11%)
Query: 100 LHFVKHILLSHNKEITGLHKD-----IFKGTPQLESLNLRGNS--IT-ELYSGVFQYVPK 151
L + +LL + IT L D + G +L +T S + QY P
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464
Query: 152 LQVLDLGSNDVAYMDP---EIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISG 207
++ + LG + D E + +L+ L + A +P+LR L + G
Sbjct: 465 VRWMLLGYVGES--DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522
Query: 208 NNISI 212
S+
Sbjct: 523 YRASM 527
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 62.0 bits (151), Expect = 1e-11
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 318 RDCKKLVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
R + +L L ++ E L + +EL L+ N L +I +L L+ L L+LS
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSD 73
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
N++ + + +L ++LS N + + PLK+ NL++++L +++L
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE----PLKKLENLKSLDLFNCEVTNLN 129
Query: 436 DDW---ISSMTSLKELD 449
D + L LD
Sbjct: 130 DYRENVFKLLPQLTYLD 146
Score = 61.6 bits (150), Expect = 2e-11
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 15/143 (10%)
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
+ + + LEL+ +KEL N ++N+ + L L
Sbjct: 2 EMGRRIHLELRNRT--------PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG 53
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-D 437
L I L+ L ++LS N ++ ++C NL +NLS N+I L +
Sbjct: 54 LTSIAN--LPKLNKLKKLELSDNRVS----GGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107
Query: 438 WISSMTSLKELDLRHNNFSFIPD 460
+ + +LK LDL + + + D
Sbjct: 108 PLKKLENLKSLDLFNCEVTNLND 130
Score = 55.5 bits (134), Expect = 3e-09
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
Query: 71 KLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHN--KEITGLHKDIFKGTPQL 128
+ + L NS SN G L D ++ + + I L K +L
Sbjct: 13 NRTPSDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVGLTSIANLPK-----LNKL 66
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYM-DPEIFKNLTSLRILNLDHNQLI 187
+ L L N ++ + + P L L+L N + + E K L +L+ L+L + ++
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
Query: 188 NLT---RAIFNNVPNLRSLD 204
NL +F +P L LD
Sbjct: 127 NLNDYRENVFKLLPQLTYLD 146
Score = 49.7 bits (119), Expect = 3e-07
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 127 QLESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
++ L L + E G+ +L+ L + + + L L+ L L N+
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR 75
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFY 228
+ + PNL L++SGN I L + L L++
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119
Score = 44.7 bits (106), Expect = 1e-05
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ---LENITSLVGLSGLNSLD 373
KL KLEL N++ E L E L LNL N+ L I L L L SLD
Sbjct: 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119
Query: 374 LSWNQLEQIN 383
L ++ +N
Sbjct: 120 LFNCEVTNLN 129
Score = 40.0 bits (94), Expect = 6e-04
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 6/122 (4%)
Query: 169 IFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
+ + ++ L LD+++ + + L L ++ + L KL+
Sbjct: 12 RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKL 69
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHK-DSLKELPSGLFANLPLLNTVILGESSIAE 286
+ NR + L + L + +S +K L + L L ++ L +
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLFNCEVTN 127
Query: 287 LP 288
L
Sbjct: 128 LN 129
Score = 30.4 bits (69), Expect = 1.0
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 619 LILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMY-----PYLNHLELID 667
L L +N ++ LE E +T L+LS N I + T+ L L+L +
Sbjct: 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 60.9 bits (148), Expect = 5e-11
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 318 RDCKKLVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
R + +L L K E L L L+L N L ++++L L L L+LS
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSE 80
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
N++ + + L +L ++LS N L + PLK+ L++++L +++L
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE----PLKKLECLKSLDLFNCEVTNLN 136
Query: 436 DDW---ISSMTSLKELDLR 451
D + L LD
Sbjct: 137 DYRESVFKLLPQLTYLDGY 155
Score = 60.5 bits (147), Expect = 7e-11
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 7/130 (5%)
Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINL 384
++++R L +++EL N K+N + L L L L ++
Sbjct: 7 GMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS- 65
Query: 385 IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-DWISSMT 443
L L ++LS N + ++ NL +NLS N++ + + + +
Sbjct: 66 -NLPKLPKLKKLELSENRIFGGLDMLA----EKLPNLTHLNLSGNKLKDISTLEPLKKLE 120
Query: 444 SLKELDLRHN 453
LK LDL +
Sbjct: 121 CLKSLDLFNC 130
Score = 56.7 bits (137), Expect = 1e-09
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 8/139 (5%)
Query: 70 SKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLE 129
+ L N SN G + ++ + L + + + P+L+
Sbjct: 19 RNRTPAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLK 74
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRILNLDHNQLIN 188
L L N I + + +P L L+L N + + E K L L+ L+L + ++ N
Sbjct: 75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134
Query: 189 LT---RAIFNNVPNLRSLD 204
L ++F +P L LD
Sbjct: 135 LNDYRESVFKLLPQLTYLD 153
Score = 56.3 bits (136), Expect = 2e-09
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
V+ ++L + K G + + LE L+L + + +PKL+ L+L N +
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI 83
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISILP---SGVF 218
+ + L +L LNL N+L +++ + L+SLD+ ++ L VF
Sbjct: 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143
Query: 219 SDLRKLQ 225
L +L
Sbjct: 144 KLLPQLT 150
Score = 50.9 bits (122), Expect = 1e-07
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 126 PQLESLNLRGNSIT-ELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
+ L L G+ L+ L L + + + L L+ L L N
Sbjct: 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN 81
Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFY 228
++ + +PNL L++SGN + + + L L++
Sbjct: 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126
Score = 44.7 bits (106), Expect = 2e-05
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISIL 213
VLD ++ ++ + +L L+L + LI++ + +P L+ L++S N I
Sbjct: 30 VLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86
Query: 214 PSGVFSDLRKLQTFYANSNRFQ 235
+ L L + N+ +
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLK 108
Score = 44.3 bits (105), Expect = 2e-05
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ---LENITSLVGLSGLNSLD 373
KL KLEL N++ + L E L L LNL N+ + + L L L SLD
Sbjct: 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126
Query: 374 LSWNQLEQIN 383
L ++ +N
Sbjct: 127 LFNCEVTNLN 136
Score = 30.5 bits (69), Expect = 1.1
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 619 LILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMY-----PYLNHLELID 667
L L N I L+ E +T L+LS N + + T+ L L+L +
Sbjct: 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 62.8 bits (153), Expect = 1e-10
Identities = 58/347 (16%), Positives = 110/347 (31%), Gaps = 78/347 (22%)
Query: 175 SLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
S+ +L + + ++ + + +++ + +SGN I + S+
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSEN-------- 55
Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHK--DSLKELPSGLFANLPLLNTVILGESSIAEL 287
A K L++ + S E+P L L +L + +
Sbjct: 56 ------------IASKKDLEIAEFSDIFTGRVKDEIPEALRL----LLQALLKCPKLHTV 99
Query: 288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL-----KYLPENLFE 342
L N T + L L L L N L + L E
Sbjct: 100 --RLSDN-----AFGPTAQEPL----IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148
Query: 343 SL--------KELYTLNLKNNQLENI------TSLVGLSGLNSLDLSWNQL--EQINLIA 386
L ++ N+LEN + L+++ + N + E I +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208
Query: 387 FDGLS---SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSM- 442
+GL+ L +DL N T LK NL + L+ +S+ +
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268
Query: 443 -----TSLKELDLRHNNFS-----FIPDQLDSIVSNKLTLDLSFNQI 479
L+ L L++N + +D + + L L+L+ N+
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
Score = 60.1 bits (146), Expect = 9e-10
Identities = 57/325 (17%), Positives = 107/325 (32%), Gaps = 62/325 (19%)
Query: 128 LESLNLRGNSIT----ELYSGVFQYVPKLQVLDLGSNDV----AYMDPEIFKNLTSLRIL 179
+E +L+ ++IT + V ++ + L N + A E + L I
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 180 NLDHNQ-----------LINLTRAIFNNVPNLRSLDISGNNISILPSGV------FSDLR 222
L L +A+ P L ++ +S N P+ S
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFG--PTAQEPLIDFLSKHT 122
Query: 223 KLQTFYANSNRFQMFPKDLFAEM-KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE 281
L+ Y ++N A + L V K + + L+ + N L
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI--ICGRNR-------LEN 173
Query: 282 SSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTLFRDCKKLVKLELQRNKL---- 333
S+ E + F + + + + + + L C++L L+LQ N
Sbjct: 174 GSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232
Query: 334 -KYLPENLFESLKELYTLNLKNNQLENI------TSLVGLS--GLNSLDLSWNQLEQINL 384
L L +S L L L + L + L GL +L L +N++E +
Sbjct: 233 SSALAIAL-KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291
Query: 385 IAF-----DGLSSLNTVDLSHNLLT 404
+ + L ++L+ N +
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFS 316
Score = 48.6 bits (116), Expect = 4e-06
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 21/104 (20%)
Query: 126 PQLESLNLRGNSIT----ELYSGVFQYVPKLQVLDLGSNDV----AYMDPEIFKNL---- 173
+L+ L+L+ N+ T + + P L+ L L + A +
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA---AVVDAFSKLE 272
Query: 174 -TSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
L+ L L +N++ L I +P+L L+++GN S
Sbjct: 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
Score = 48.6 bits (116), Expect = 5e-06
Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 20/133 (15%)
Query: 122 FKGTPQLESLNLRGNSIT-----ELYSGVFQYVPKLQVLDLGSNDV----AYMDPEIFKN 172
F+ L ++ + N I L Y +L+VLDL N + K+
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242
Query: 173 LTSLRILNLDHNQL-----INLTRAIFNNV-PNLRSLDISGNNIS-----ILPSGVFSDL 221
+LR L L+ L + A L++L + N I L + + +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302
Query: 222 RKLQTFYANSNRF 234
L N NRF
Sbjct: 303 PDLLFLELNGNRF 315
Score = 47.0 bits (112), Expect = 1e-05
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 15/103 (14%)
Query: 123 KGTPQLESLNLRGNSITE----LYSGVFQYVPKLQVLDLGSND-----VAYMDPEIFKNL 173
K P L S+ N + ++ FQ L + + N + ++ E
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215
Query: 174 TSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
L++L+L N L A+ + PNLR L ++ +S
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSW-PNLRELGLNDCLLS 257
Score = 38.5 bits (90), Expect = 0.006
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 27/110 (24%)
Query: 126 PQLESLNLRGNSITELYSGV------FQYVPKLQVLDLGSNDV-------------AYMD 166
P+L ++ L N+ + L+ L L +N +
Sbjct: 94 PKLHTVRLSDNAFGP--TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151
Query: 167 PEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
+ KN LR + N+L + ++ L ++ + N I
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH-RLLHTVKMVQNGIR 200
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 2e-10
Identities = 94/615 (15%), Positives = 169/615 (27%), Gaps = 259/615 (42%)
Query: 15 SNSLEIDCSHFVG-----VENSSSSNGSIYDRLPEQNLGPFNAVTF-------TF-CPLP 61
+ E+ F+G VE S +D++ L F + L
Sbjct: 55 TTPAEL-VGKFLGYVSSLVEPSKVGQ---FDQVLNLCLTEFEN-CYLEGNDIHALAAKLL 109
Query: 62 DENFISLFSKLNI--TTINTLAFSNSPSNVGVLSP-----------------------PY 96
EN +L + I + P + S Y
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 97 FDGLHFVKHILLSHNKEI----TGLHKDIFK-GTPQLESLNLRGNSITELYSGVFQYVPK 151
F+ L +++ L D+ K L L ++++
Sbjct: 170 FEEL-----------RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI--- 215
Query: 152 LQVLDLGSN--DVAYMD------PEIFKNLTSL-------RILNLDHNQLINLTRAIFNN 196
L+ L+ SN D Y+ P I + L ++L +L + +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIG--VIQLAHYVVTAKLLGFTPGELRSYLKGA--- 270
Query: 197 VPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR-----F-------QMFPKDLFAE 244
+G++ ++ + ++ ++F+ + + F + +P
Sbjct: 271 ---------TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN----- 316
Query: 245 MKYLQVIKISYHKDSLKE---LPSGLFANLPLLNTVILG------ESSI----AELPSD- 290
+ S +DSL+ +PS P+L I + + + LP+
Sbjct: 317 ----TSLPPSILEDSLENNEGVPS------PML--SISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 291 -----LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL------------QRNKL 333
L N N+V++G P +L+ L K + +R KL
Sbjct: 365 QVEISLV-NGAK--NLVVSGP------PQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KL 414
Query: 334 K----YLPENL-FESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFD 388
K +LP F S L + L+ L ++S+N + I + +D
Sbjct: 415 KFSNRFLPVASPFHSH---L--------LVPASDLI-NKDLVKNNVSFNA-KDIQIPVYD 461
Query: 389 GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKEL 448
TFD G
Sbjct: 462 ---------------TFD----GS------------------------------------ 466
Query: 449 DLRHNNFSFIPDQLDSIVSNKLTLD----LSFNQIAIVDL-------------RTLE--- 488
DLR + S +D I+ L + F I+D R +
Sbjct: 467 DLRVLSGSISERIVDCIIR--LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
Query: 489 ---IKAAAQDPNEDS 500
I A D N D
Sbjct: 525 VRVIVAGTLDINPDD 539
Score = 62.8 bits (152), Expect = 3e-10
Identities = 87/514 (16%), Positives = 144/514 (28%), Gaps = 196/514 (38%)
Query: 200 LRSLDISGNNI--SIL-PSGVFSDLRKLQ-TFYAN-SNRFQMFPKD--------LFAEMK 246
R L +S ++ +L P+ F +LQ F + F D L K
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG--K 63
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI----AELPSDLFWNSTNITNIV 302
+L + + + L L L + I A+L + ++
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 303 --------LTGHKKLTSLPSTLFRDCKK-LVKLEL----QRNKLKYLPENLFESLKELYT 349
+ S LFR + +L Q N Y E L++LY
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-----LRDLYQ 178
Query: 350 LNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
T LVG DL I A + LS L + L
Sbjct: 179 -----------TYHVLVG-------DL-------IKFSA-ETLSEL----IRTTLDAEKV 208
Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFD--DWISSMTSLKELDLRHNNFSFIPDQ--LD 463
+ G + +W+ + ++ PD+ L
Sbjct: 209 FTQG-----------------------LNILEWLENPSN-------------TPDKDYLL 232
Query: 464 SI-VSNKLTLDLSFNQIA--IVDLRTLEIKAAAQDPNE----DSTMVARSANIVILNDNP 516
SI +S L + Q+A +V + L P E S +V
Sbjct: 233 SIPISCPL---IGVIQLAHYVVTAKLLGF-----TPGELRSYLKGATGHSQGLV------ 278
Query: 517 IACNCSNYDLIRFVSKKMT-----KTVYQMLELVTDNL--------ECFGNAGVGINSVR 563
A +++ + +V + + + L E + N S+
Sbjct: 279 TA---------VAIAETDSWESFFVSVRKAITV----LFFIGVRCYEAYPNT-----SLP 320
Query: 564 PENLTCDTK------PCPARCYCNFSPYYSIM-SV-NCSSASL----THMPDYLPVTYED 611
P L D+ P P M S+ N + + +LP
Sbjct: 321 PSILE-DSLENNEGVPSP-------------MLSISNLTQEQVQDYVNKTNSHLP---AG 363
Query: 612 KKATSIQLILHNNSINHF-LESPPES-YKLITDL 643
K+ I L+ N + + PP+S Y L L
Sbjct: 364 KQV-EISLV---NGAKNLVVSGPPQSLYGLNLTL 393
Score = 43.5 bits (102), Expect = 3e-04
Identities = 82/459 (17%), Positives = 149/459 (32%), Gaps = 154/459 (33%)
Query: 36 GSIYDRLPE-QNL--------GPF-NAVTFTFCPLP--DENFISLFSKLNITTINTLAFS 83
G+ D E ++L G T L + +F++ +N L +
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ----GLNILEWL 219
Query: 84 NSPSNVGVLSPP--YFD---------GL----HFV---KHI------LLSHNKEITGLHK 119
+PSN P Y G+ H+V K + L S+ K TG +
Sbjct: 220 ENPSNT----PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 120 DI-----FKGTPQLESLNLRGNSITEL--YSGV--FQYVPKLQV--------LDLGSNDV 162
+ T ES + + + GV ++ P + L+
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN------ISILPS- 215
+ M L I NL Q+ + +++P + ++IS N +S P
Sbjct: 336 SPM----------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 216 --GVFSDLRKLQTFYANSNRFQMFPKDLFAEMK---YLQVIKIS--YHKDSLKELPSGLF 268
G+ LRK + A S Q + F+E K + + ++ +H S
Sbjct: 386 LYGLNLTLRKAK---APSGLDQ--SRIPFSERKLKFSNRFLPVASPFH--S--------- 429
Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP--STLFRDCKKLVKL 326
LL + + DL N+ + K + +P T D L
Sbjct: 430 ---HLL------VPASDLINKDLVKNNVSFN------AKDI-QIPVYDT--FDGSDL--- 468
Query: 327 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-----GLSGLNSLDLSWNQLEQ 381
R + E + + + L + + T ++ G SGL L ++ +
Sbjct: 469 ---RVLSGSISERIVDCIIRL-PVKWETTTQFKATHILDFGPGGASGLGVLT---HRNKD 521
Query: 382 ---INLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQ 417
+ +I T+D++ + D+ YG+ KQ
Sbjct: 522 GTGVRVI------VAGTLDINPD----DD--YGF---KQ 545
Score = 35.8 bits (82), Expect = 0.060
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 474 LSFNQ-IAIVDLR-TLEIKAAAQDPNEDST--MVARSANIVILNDNPIACNCSNYDLIRF 529
+S + +V R A +D S M+A +N +A + S + +++
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-------INPGRVAASFSQ-EALQY 1828
Query: 530 VSKKMTKTVYQMLELVTDNLE 550
V +++ K ++E+V N+E
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVE 1849
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 60.2 bits (146), Expect = 7e-10
Identities = 48/311 (15%), Positives = 99/311 (31%), Gaps = 30/311 (9%)
Query: 165 MDPEIFKNLTSLRILNLDHNQLINLT--RAIFNNVPNLRSLDISGNNISILPSGV----F 218
M E ++T L + +N R + + P+L+ LDIS I +
Sbjct: 19 MTEEEANSITHLTL-----TGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPN 73
Query: 219 SDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVI 278
+ + F + + L+ + +S + +K + F L
Sbjct: 74 GKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILS---EKIKNIEDAAFKGCDNLKICQ 130
Query: 279 LGESSIAELPSDLFWNSTNITNI---VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335
+ + + L + +S I ++ F + + L +
Sbjct: 131 IRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQV-GAMGK 189
Query: 336 LPENLFESLKELYTLNLKN--NQLENI---TSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390
L + + ++ + +N +L+N + L SLD+S I F
Sbjct: 190 LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249
Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE-TINLSYNRISSLFDDWISSMTSLKELD 449
L + L HNL T G C L T+ L ++++ +L+ +
Sbjct: 250 KYLLKIKLPHNLKTI-----GQRVFSNCGRLAGTLELP-ASVTAIEFGAFMGCDNLRYVL 303
Query: 450 LRHNNFSFIPD 460
+ + + D
Sbjct: 304 ATGDKITTLGD 314
Score = 57.1 bits (138), Expect = 7e-09
Identities = 52/329 (15%), Positives = 104/329 (31%), Gaps = 24/329 (7%)
Query: 33 SSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISL---FSKLNITTINTLAFSNSPSNV 89
S G++ + E+ +T T L E+F L F L + I+
Sbjct: 10 SKPGTLISMMTEEEANSITHLTLT-GKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA 68
Query: 90 GVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYV 149
G Y +G ++ + + + KG LE + L I + F+
Sbjct: 69 GT----YPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVIL-SEKIKNIEDAAFKGC 123
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAI----FNNVPNLRSLDI 205
L++ + + PE + + + L + F L +
Sbjct: 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ 183
Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKD---LFAEMKYLQVIKISYHKDSLKE 262
+ L + + + + ++ D + M L + IS K +
Sbjct: 184 V-GAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDIS--KTNATT 240
Query: 263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 322
+P FA L + L ++ + +F N + + +T++ F C
Sbjct: 241 IPDFTFAQKKYLLKIKLP-HNLKTIGQRVFSNCGRLAGTL-ELPASVTAIEFGAFMGCDN 298
Query: 323 LVKLELQRNKLKYLPENLFE---SLKELY 348
L + +K+ L + LF K +Y
Sbjct: 299 LRYVLATGDKITTLGDELFGNGVPSKLIY 327
Score = 54.8 bits (132), Expect = 4e-08
Identities = 40/297 (13%), Positives = 94/297 (31%), Gaps = 31/297 (10%)
Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGS----NDVAYMDPEIFKNLT 174
+ + P L+ L++ I Y + + + + + + K
Sbjct: 42 RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
+L + L ++ N+ A F NL+ I L +D S+
Sbjct: 102 TLEKVIL-SEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA 160
Query: 235 QMFPKDL----FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
F F E + L+ ++ +L + + +D
Sbjct: 161 YRFKNRWEHFAFIEGEPLETTIQV---GAMGKLEDEIMKAGLQPRDINFLTIEGKLDNAD 217
Query: 291 ---LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE---SL 344
+ N+ ++ ++ T++P F K L+K++L + LK + + +F L
Sbjct: 218 FKLIRDYMPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKL-PHNLKTIGQRVFSNCGRL 275
Query: 345 KELYTLNLKNNQLENITSL-----VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV 396
L ++T++ +G L + + +++ + F +
Sbjct: 276 AGTLELP------ASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326
Score = 29.0 bits (65), Expect = 5.4
Identities = 21/173 (12%), Positives = 53/173 (30%), Gaps = 24/173 (13%)
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
+ +IT++ LTG L + L L++ ++K + + +
Sbjct: 23 EANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYM- 80
Query: 354 NNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYS 413
+ V +++ G +L V LS + +
Sbjct: 81 -------ANFVPAYAFSNVVNG----------VTKGKQTLEKVILSEKIKNI-----EDA 118
Query: 414 PLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIV 466
K C NL+ + +L + ++ + + L ++ ++ +
Sbjct: 119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA 171
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 60.7 bits (147), Expect = 9e-10
Identities = 53/375 (14%), Positives = 115/375 (30%), Gaps = 64/375 (17%)
Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGS------NDVAYMDPEIFKNLT 174
+ P L+SL L E + + Q P+L+ L G DV
Sbjct: 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTFYANSNR 233
LR L+ + + A+++ L +L++S + + KLQ +
Sbjct: 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG--------LFANLPLLNTVILGESSIA 285
+ L + K L+ +++ + + E + P L +V+
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF----- 380
Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP-------- 337
+TN L T+ R+ + + L + K
Sbjct: 381 ---------CRQMTNAALI----------TIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421
Query: 338 ---ENLFESLKELYTLNLK----NNQLENITSLVGLSGLNSLDLSWNQLEQINLIAF-DG 389
+ E K+L L+L + E I + + L +++ + + G
Sbjct: 422 IGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT--YAKKMEMLSVAFAGDSDLGMHHVLSG 479
Query: 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSM-TSLKEL 448
SL +++ + + + ++ +S +S + + +L
Sbjct: 480 CDSLRKLEIRDCPFGDKA---LLANASKLETMRSLWMSSCSVS---FGACKLLGQKMPKL 533
Query: 449 DLRHNNFSFIPDQLD 463
++ + PD
Sbjct: 534 NVEVIDERGAPDSRP 548
Score = 55.3 bits (133), Expect = 4e-08
Identities = 56/378 (14%), Positives = 128/378 (33%), Gaps = 50/378 (13%)
Query: 121 IFKGTPQLESLNLRG-NSITEL-YSGVFQYVPKLQVLDLGSNDVAYMDPE----IFKNLT 174
I K + L L + + + L+ LDL +DV + T
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184
Query: 175 SLRILNL-DHNQLINLT--RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF---- 227
SL LN+ ++ + + PNL+SL ++ + + +L+
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI-AE 286
Y R ++ A ++ +S D++ +++ L T+ L +++ +
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304
Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN------- 339
L + + + + + L L CK L +L + ++ + N
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGL-EVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363
Query: 340 ---LFESLKELYTLNLKNNQL--ENITSLV-GLSGLNSLDLSWNQLEQINLIAFD----- 388
+ +L ++ Q+ + ++ + L + + + + +
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423
Query: 389 ------GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI--- 439
L + LS LLT ++Y +E +++++ S D +
Sbjct: 424 FGAIVEHCKDLRRLSLSG-LLTDKVFEYI---GTYAKKMEMLSVAFAGDS---DLGMHHV 476
Query: 440 -SSMTSLKELDLRHNNFS 456
S SL++L++R F
Sbjct: 477 LSGCDSLRKLEIRDCPFG 494
Score = 37.6 bits (87), Expect = 0.013
Identities = 31/210 (14%), Positives = 63/210 (30%), Gaps = 30/210 (14%)
Query: 285 AELPSDLFWNSTNITNIVLTGHKKLTSLP--------------STLFRDCKKLVKLELQR 330
A P+ + + ++ L G + L ++ L+R
Sbjct: 55 AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR 114
Query: 331 NKL--KYLPENLFESLKELYTLNLKNNQLENITS------LVGLSGLNSLDLSWNQLEQI 382
+ L E + +S K L L + E ++ L LDL + ++ +
Sbjct: 115 MVVTDDCL-ELIAKSFKNFKVLVLSSC--EGFSTDGLAAIAATCRNLKELDLRESDVDDV 171
Query: 383 NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPL----KQCVNLETINLSYNRISSLFDDW 438
+ T L ++ + +S L +C NL+++ L+
Sbjct: 172 SGHWLSHFPDTYTS-LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL 230
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSN 468
+ L+EL PD +
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 58.9 bits (143), Expect = 2e-09
Identities = 52/322 (16%), Positives = 100/322 (31%), Gaps = 73/322 (22%)
Query: 168 EIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
E + L+L N L + L +A N ++ SL++SGN++
Sbjct: 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--FKNS----- 68
Query: 223 KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES 282
D ++ ++ ++ L L+ L
Sbjct: 69 -----------------DELVQI-------LAAIPANVTSL---------NLSGNFLSYK 95
Query: 283 SIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTLFRDCKKLVKLELQRNKL----- 333
S EL L IT + L K + + L L+ N L
Sbjct: 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155
Query: 334 KYLPENLFESLKELYTLNLKNNQLENI------TSLVGL-SGLNSLDLSWNQLEQINLIA 386
L + L + +LNL+ N L + L + + + SLDLS N L +
Sbjct: 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215
Query: 387 F-DGL----SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD---- 437
+ + +++L N L + +L+T+ L Y+ + ++ +
Sbjct: 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275
Query: 438 ---WISSMTSLKELDLRHNNFS 456
++ + +D
Sbjct: 276 LGAAFPNIQKIILVDKNGKEIH 297
Score = 53.2 bits (128), Expect = 1e-07
Identities = 60/373 (16%), Positives = 110/373 (29%), Gaps = 83/373 (22%)
Query: 150 PKLQVLDLGSND-----VAYMDPEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPN 199
+ LDL N+ + S+ LNL N L L + + N
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 200 LRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS 259
+ SL++SGN +S D + ++ +
Sbjct: 82 VTSLNLSGNFLS--YKSS----------------------DELVKT-------LAAIPFT 110
Query: 260 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPST 315
+ L L N S +E +IT++ L G K L
Sbjct: 111 ITVL--DLGWN-------DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161
Query: 316 LFRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLEN--ITSLVGL-- 366
L + L L+ N L L + L + +L+L N L L +
Sbjct: 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221
Query: 367 ---SGLNSLDLSWNQLEQINLI----AFDGLSSLNTVDLSHNLL---TFDEYQYGYSPLK 416
+ + SL+L N L +L D L L TV L ++++ + ++ + +
Sbjct: 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281
Query: 417 QCVNLETINLSYNRISSLFDDWISSM-----TSLKELDLRHNNFSFIPDQLDSIVSNKLT 471
+ ++ + I IS++ L + F +I +
Sbjct: 282 NIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341
Query: 472 -----LDLSFNQI 479
+ +
Sbjct: 342 DELRESIQTCKPL 354
Score = 48.2 bits (115), Expect = 6e-06
Identities = 44/306 (14%), Positives = 98/306 (32%), Gaps = 52/306 (16%)
Query: 127 QLESLNLRGNSITE-----LYSGVFQYVPKLQVLDLGSND-----VAYMDPEIFKNLTSL 176
+ SLNL GNS+ L + + L+L N + + ++
Sbjct: 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111
Query: 177 RILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS-----ILPSGVFSDLRKLQT 226
+L+L N +A N ++ SL++ GN++ L + + + +
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171
Query: 227 FYANSNRF-----QMFPKDLFAEMKYLQVIKISYHK---DSLKELPSGLFANLPLLNTVI 278
N K L + + + +S + S EL + + ++
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231
Query: 279 LGESSI----AELPSDLFWNSTNITNIVLT-------GHKKLTSLPSTLFRDCKKLVKLE 327
L + + E L + ++ + L ++ +L F + +K++ ++
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL-GAAFPNIQKIILVD 290
Query: 328 LQRNKL-----KYLPENLFESLKELYTLNLKNNQL-------ENITSLVGLSGLNSLDLS 375
++ + + E + +L N L NI L L +
Sbjct: 291 KNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQT 350
Query: 376 WNQLEQ 381
L +
Sbjct: 351 CKPLLE 356
Score = 40.5 bits (95), Expect = 0.001
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 16/103 (15%)
Query: 125 TPQLESLNLRGNSIT----ELYSGVFQYVPKLQVLDLGSNDVAYMDPE-------IFKNL 173
+ SLNL N + E + + LQ + L + V M E F N+
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283
Query: 174 TSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
+ +++ + ++ I ++ I + +
Sbjct: 284 QKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLI 326
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 54.3 bits (131), Expect = 6e-08
Identities = 52/431 (12%), Positives = 130/431 (30%), Gaps = 79/431 (18%)
Query: 28 VENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPS 87
+S + SI + + T + + + +T+ FS+S
Sbjct: 18 PIGASLEDFSIEQLPAKTIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVP 77
Query: 88 NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQ 147
+G + +S + G+ + + + L NS+ + F+
Sbjct: 78 VDKQEVTITIEGKQKSFSVHISPVRVENGV---LTEILKGYNEIIL-PNSVKSIPKDAFR 133
Query: 148 YVPKLQVLDLGSNDVAYMDPEIFKN--LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205
++ + L + + F N + + + L L IF NL+ D+
Sbjct: 134 NS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVF----PSTLEQLKEDIFYYCYNLKKADL 187
Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPS 265
S I+ LP+ + + ++ + + +LKE+ S
Sbjct: 188 SKTKITKLPAS----------TFVYAG---------------IEEVLLP---VTLKEIGS 219
Query: 266 GLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 325
F L T+ + +++ + + F S IT + L +T++ S F C +L +
Sbjct: 220 QAFLKTSQLKTIEIP-ENVSTIGQEAFRES-GITTVKL--PNGVTNIASRAFYYCPELAE 275
Query: 326 LEL-----QRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
+ + + E +L + + +
Sbjct: 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-----------------------IR 312
Query: 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD-WI 439
+ G + + + N+ + + + ++ + + +F+ W
Sbjct: 313 ILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT------GIKEVKVEGTTPPQVFEKVWY 366
Query: 440 SSMTSLKELDL 450
+ + +
Sbjct: 367 GFPDDITVIRV 377
Score = 48.2 bits (115), Expect = 5e-06
Identities = 36/209 (17%), Positives = 65/209 (31%), Gaps = 38/209 (18%)
Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
+L++L +F L L ++ I +LP+ F I ++L L + S F
Sbjct: 166 STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLL--PVTLKEIGSQAF 222
Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWN 377
+L +E+ + + + F SG+ ++ L N
Sbjct: 223 LKTSQLKTIEIP-ENVSTIGQEAFRE-----------------------SGITTVKLP-N 257
Query: 378 QLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY-GYSPLKQCVNLETINLSYNRISSLFD 436
+ I AF L V + D L+ C L + + I L
Sbjct: 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQ 316
Query: 437 DWISSMTSLKELDLRHNNFSFIPDQLDSI 465
+ + +L IP + I
Sbjct: 317 GLLGGNRKVTQLT--------IPANVTQI 337
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 50.1 bits (120), Expect = 1e-06
Identities = 35/196 (17%), Positives = 63/196 (32%), Gaps = 37/196 (18%)
Query: 321 KKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLENI------TSLVGLSGL 369
+ KL LQ N L K L + L ++ TL L NN L L G + +
Sbjct: 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185
Query: 370 NSLDLSWNQLEQINLIAF-DGL---SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425
L L L L L L +++++N ++ +LE ++
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245
Query: 426 LSYNRISS----LFDDWISSMTSLKELDLRHNNFSFIPDQ--------------LDSIVS 467
L +N +SS + D + + + + + + D
Sbjct: 246 LYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARV 305
Query: 468 NK----LTLDLSFNQI 479
+ L DL ++
Sbjct: 306 QRHLELLLRDLEDSRG 321
Score = 42.4 bits (100), Expect = 4e-04
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 17/98 (17%)
Query: 128 LESLNLRGNSITE-----LYSGVFQYVPKLQVLDLGSNDVAYMDPE----IFKNLTSLRI 178
L LNL G +T + + + L ++L S + DP + R
Sbjct: 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL---DPAGLRTLLPVFLRARK 130
Query: 179 LNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
L L N L +L + ++ + +L +S N ++
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT 168
Score = 42.0 bits (99), Expect = 5e-04
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 127 QLESLNLRGNSITE----LYSGVFQYVPKLQVLDLGSNDVAYMDP------EIFKNLTSL 176
Q+ +L L N +T + + L L + D L
Sbjct: 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG--DEGLELLAAQLDRNRQL 213
Query: 177 RILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
+ LN+ +N + L RA + P+L L + N +S
Sbjct: 214 QELNVAYNGAGDTAALALARAAREH-PSLELLHLYFNELS 252
Score = 38.5 bits (90), Expect = 0.006
Identities = 39/299 (13%), Positives = 87/299 (29%), Gaps = 61/299 (20%)
Query: 100 LHFVKHILLSHNK----EITGLHKDIFKGTPQLESLNLRGNSITELYSGV---FQYVPKL 152
L ++ + L+ + + T + + G L+ +NL + +G+ +
Sbjct: 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP--AGLRTLLPVFLRA 128
Query: 153 QVLDLGSND-----VAYMDPEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRS 202
+ L L N + + + + L L +N L L + N ++
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN-TSVTH 187
Query: 203 LDISGNNISILPSGV------FSDLRKLQTFYANSNRFQMFPKDLFAEM----KYLQVIK 252
L + + G+ R+LQ N A L+++
Sbjct: 188 LSLLHTGLG--DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245
Query: 253 ISYHK----------DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 302
+ +++ D G + L + E L
Sbjct: 246 LYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ----------- 294
Query: 303 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL-PENLFESLK---ELYTLNLKNNQL 357
+ L S + +L+ +L+ ++ L P + L+ E+ L +
Sbjct: 295 ----RNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349
Score = 36.2 bits (84), Expect = 0.032
Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 44/184 (23%)
Query: 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE-NITSLV--GLS 367
++ + L K L LE + K L + + L L+ E LS
Sbjct: 13 AVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLS 72
Query: 368 GLNSLDLSWNQL--EQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425
L L+L+ ++ + ++A L S L+ +N
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVAA-VLGSGRHA------------------------LDEVN 107
Query: 426 LSYNRIS-----SLFDDWISSMTSLKELDLRHNNFS-----FIPDQLDSIVSNKLTLDLS 475
L+ ++ +L + ++L L+ N+ + D L TL LS
Sbjct: 108 LASCQLDPAGLRTL----LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS 163
Query: 476 FNQI 479
N +
Sbjct: 164 NNPL 167
Score = 34.7 bits (80), Expect = 0.095
Identities = 43/332 (12%), Positives = 94/332 (28%), Gaps = 96/332 (28%)
Query: 171 KNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS------ILPSGVFS 219
+ L+SLR LNL ++ + + + L ++++ + +LP
Sbjct: 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV---- 124
Query: 220 DLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
+ + N ++ K+L L +
Sbjct: 125 -FLRARKLGLQLNSLG---------------------PEACKDLRDLLLHD--------- 153
Query: 280 GESSIAELPSDLFWNSTNITNI-------VLTGHKKLTSLP--------------STLFR 318
+ I L L N +T L G+ +T L +
Sbjct: 154 -QCQITTL--RLSNN--PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208
Query: 319 DCKKLVKLELQRNKLKYLP-ENLFESLKE---LYTLNLKNNQLEN------ITSLVGLSG 368
++L +L + N L + +E L L+L N+L + G
Sbjct: 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEG 268
Query: 369 LNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSY 428
+ +S + ++ LS + S + + + L +L
Sbjct: 269 GARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQ----------RHLELLLRDLED 318
Query: 429 NRISSL----FDDWISSMTSLKELDLRHNNFS 456
+R ++L + ++ L + +
Sbjct: 319 SRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 42.5 bits (100), Expect = 6e-05
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
+ L ++GNN++ LP G+ L L+T + +N ++
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 40.2 bits (94), Expect = 3e-04
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
L L N L L + + +P LR+ + N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 39.8 bits (93), Expect = 5e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSN 160
L L GN++T L G+ +P L+ LG+N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 39.4 bits (92), Expect = 5e-04
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 307 KKLT--SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
+ LT SLP+ D +L L N L LP L ++L L T +L N
Sbjct: 18 RGLTWASLPTAFPVD---TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 37.9 bits (88), Expect = 0.002
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 14/82 (17%)
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN------QLINLTRAIFNNVPNLRSLDI 205
L L N++ + P + L +LR +L N +L+ L + D+
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDL 92
Query: 206 --------SGNNISILPSGVFS 219
G + L
Sbjct: 93 RCVAPPALRGRLLPYLAEDELR 114
Score = 36.7 bits (85), Expect = 0.006
Identities = 28/127 (22%), Positives = 40/127 (31%), Gaps = 28/127 (22%)
Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTH--MPDYLPVTYEDKKATSIQLILHNNSINHFL 630
PCPA C C + V+C LT +P PV +L+L N++
Sbjct: 1 PCPAPCSC------AGTLVDCGRRGLTWASLPTAFPVDTT-------ELVLTGNNLTAL- 46
Query: 631 ESPP---ESYKLITDLDLSYNNISHVDTMYPYL-----NHLELIDSEKIICHGSTKPLNG 682
PP ++ + L N D L E + C L G
Sbjct: 47 --PPGLLDALPALRTAHL-GANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPP-ALRG 102
Query: 683 ILLKNIQ 689
LL +
Sbjct: 103 RLLPYLA 109
Score = 33.2 bits (76), Expect = 0.076
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L L+ N L + D L +L T L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 32.9 bits (75), Expect = 0.11
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
V+ + L+ N +++L + ++ +L+ L N +
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 32.1 bits (73), Expect = 0.20
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 15/93 (16%)
Query: 105 HILLSHNKEITGLHKDIFKGTPQLESLNLRGN------SITELYSGVFQYVPKLQVLD-- 156
++L+ N +T L + P L + +L N + L + + + D
Sbjct: 35 ELVLTGNN-LTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLR 93
Query: 157 ------LGSNDVAYMDPEIFKNLTSLRILNLDH 183
L + Y+ + + + L+ H
Sbjct: 94 CVAPPALRGRLLPYLAEDELRAACAPGPLSSHH 126
Score = 29.8 bits (67), Expect = 1.3
Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 50/141 (35%)
Query: 443 TSLKELDLRHNNFSFIPDQ-LDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDST 501
EL L NN + +P LD++ + LRT
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPA----------------LRTAH------------- 61
Query: 502 MVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNA---GVG 558
L NP C+C L +++ + + +L C G
Sbjct: 62 ----------LGANPWRCDCRLVPLRAWLAGRPER-------APYRDLRCVAPPALRGRL 104
Query: 559 INSVRPENLTCDTKPCPARCY 579
+ + + L P P +
Sbjct: 105 LPYLAEDELRAACAPGPLSSH 125
Score = 27.8 bits (62), Expect = 5.3
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKIS 254
LP+ D +L N P L + L+ +
Sbjct: 25 LPTAFPVDTTEL---VLTGNNLTALPPGLLDALPALRTAHLG 63
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 44.2 bits (103), Expect = 1e-04
Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 18/171 (10%)
Query: 265 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 324
S + +PLLN + + ++ + + +++G + + L D L
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222
Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE---Q 381
KL L Y + + L ++ N L L + + +
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPL----FSKDRFPN---------LKWLGIVDAEEQNVVV 269
Query: 382 INLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432
+ D L L T+D+S +LT + + + + +L+ IN+ YN +S
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Score = 42.6 bits (99), Expect = 3e-04
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 126 PQLESLNLR-------GNSITELYSGVFQ--YVPKLQVLDLGSNDVAYMDPEIF---KNL 173
P LE L L + ++ +F P L+ L + + + E+F L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 174 TSLRILNLDHNQLINL-TRAIFNNVP---NLRSLDISGNNIS 211
L +++ L + R + ++V +L+ +++ N +S
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Score = 41.9 bits (97), Expect = 5e-04
Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 17/158 (10%)
Query: 314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNS 371
S + L L+++ + + +LK L + + ++G L L
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL-EIISGGLPDSVVEDILGSDLPNLEK 223
Query: 372 LDLSWNQLEQI---------NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE 422
L L + L + D +L + + + + LE
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ-NVVVEMFLESDILPQLE 282
Query: 423 TINLSYNRIS----SLFDDWISSMTSLKELDLRHNNFS 456
T+++S ++ L D + + LK +++++N S
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Score = 36.9 bits (84), Expect = 0.019
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 126 PQLESLNLRGNSIT-ELYSGVFQ-YVPKLQVLDL--------GSNDVAYMDPEIFKN-LT 174
P L+SL + + + + +P L+ L L D+ P K+
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252
Query: 175 SLRILNLDHNQLIN-LTRAIFN--NVPNLRSLDISGNNIS 211
+L+ L + + N + +P L ++DIS ++
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292
Score = 33.8 bits (76), Expect = 0.17
Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 19/156 (12%)
Query: 340 LFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQL--EQINLIAFDGLSSLNTVD 397
+ +++ L L +K +I L SL++ L + I L +L +
Sbjct: 167 VLDAMPLLNNLKIKGTNNLSI-GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV 225
Query: 398 LSHNL--LTFDEYQYGYSPL---KQCVNLETINLSYNRISSLFDDWISS---MTSLKELD 449
L + FD + PL + NL+ + + ++ + + L+ +D
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285
Query: 450 LRHNNFS-----FIPDQLDSIVSNKLT-LDLSFNQI 479
+ + + D +D I L +++ +N +
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIK--HLKFINMKYNYL 319
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 43.1 bits (101), Expect = 1e-04
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 92 LSPPYFDGLHFVKHIL--LSHNKEITGLHKDIFKGTPQLESLNLRGNSITEL--YSGVFQ 147
L D ++I L+ + + I + P+L SLNL N + L S + Q
Sbjct: 134 LKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 193
Query: 148 YVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRILNLDHNQLINLT-------RAIFNNVPN 199
P L++L+L N++ + K L L L LD N L + AI P
Sbjct: 194 KAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPK 252
Query: 200 LRSLDISGNNISILPSGVF 218
L LD + P F
Sbjct: 253 LLRLD----GHELPPPIAF 267
Score = 40.8 bits (95), Expect = 8e-04
Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 370 NSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN 429
+LDL + + +A + LN L + L ++NLS N
Sbjct: 130 QALDLKGLRSDPDL-VAQNIDVVLNRRSCMAATLR--------IIEENIPELLSLNLSNN 180
Query: 430 RISSL--FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT-LDLSFNQIA 480
R+ L + +LK L+L N +LD I KL L L N +
Sbjct: 181 RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233
Score = 40.0 bits (93), Expect = 0.001
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP--ENLFES 343
L SD + NI ++VL + + + + +L+ L L N+L L ++ +
Sbjct: 136 GLRSDPDLVAQNI-DVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK 194
Query: 344 LKELYTLNLKNNQLENITSLVGLSGLN--SLDLSWNQL 379
L LNL N+L++ L + GL L L N L
Sbjct: 195 APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 232
Score = 37.7 bits (87), Expect = 0.008
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
++L+L+G V L+ S A + I +N+ L LNL +N+
Sbjct: 127 GSQQALDLKGLRSDPDLVAQNIDVV----LNRRSCMAATLR-IIEENIPELLSLNLSNNR 181
Query: 186 LINLT--RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225
L L +I PNL+ L++SGN + +L K++
Sbjct: 182 LYRLDDMSSIVQKAPNLKILNLSGNELKSE-----RELDKIK 218
Score = 33.0 bits (75), Expect = 0.27
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSG----LNSLDLSWNQLEQINL 384
+R+ + + E++ EL +LNL NN+L + + + L L+LS N+L+
Sbjct: 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 213
Query: 385 IAFDGLSSLNTVDLSHNLLT 404
+ L + L N L
Sbjct: 214 LDKIKGLKLEELWLDGNSLC 233
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 42.2 bits (99), Expect = 4e-04
Identities = 37/207 (17%), Positives = 67/207 (32%), Gaps = 42/207 (20%)
Query: 283 SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE 342
S + P ++ + ++ L+ S + C KL L L+ +L N
Sbjct: 80 SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139
Query: 343 SLKELYTLNLKNNQLENITS------LVGLSGLNSLDLSW-----------------NQL 379
L LNL + L S L+ L+LSW +
Sbjct: 140 KNSNLVRLNLSG--CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197
Query: 380 EQINLIA-------------FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
Q+NL +L +DLS +++ ++ + Q L+ ++L
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND---CFQEFFQLNYLQHLSL 254
Query: 427 SY-NRISSLFDDWISSMTSLKELDLRH 452
S I + + +LK L +
Sbjct: 255 SRCYDIIPETLLELGEIPTLKTLQVFG 281
Score = 35.6 bits (82), Expect = 0.048
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 12/154 (7%)
Query: 56 TFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEIT 115
++ LPDE + +FS L + + ++ + L + + + +
Sbjct: 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCK----------RWYRLASDESLWQTLDLTGK 57
Query: 116 GLHKDIFKGTPQLESLNLRGN-SITELYSGVFQYVPKLQVLDLGSNDVAYMD-PEIFKNL 173
LH D+ + R S + ++Q +DL ++ + I
Sbjct: 58 NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG 207
+ L+ L+L+ +L + NL L++SG
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151
Score = 31.8 bits (72), Expect = 0.68
Identities = 18/98 (18%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 355 NQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP 414
N ++T + G+ + + ++Q L + +DLS++++ +
Sbjct: 58 NLHPDVTGRLLSQGVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNSVIEVST---LHGI 113
Query: 415 LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452
L QC L+ ++L R+S + ++ ++L L+L
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 37.3 bits (87), Expect = 0.007
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 23/132 (17%)
Query: 367 SGLNSLDLS-WNQLEQINLIAF-DGL---SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNL 421
L ++L+ + L A + L + + + LK L
Sbjct: 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95
Query: 422 ETINLSYNRISSLFDDWISSM-------TSLKELDLRHNNFSFIPDQ-----LDSIVSNK 469
+++N+ N IS I ++ TSL EL + N + + + + N
Sbjct: 96 KSLNVESNFIS---GSGILALVEALQSNTSLIELRI-DNQSQPLGNNVEMEIANMLEKNT 151
Query: 470 --LTLDLSFNQI 479
L F Q
Sbjct: 152 TLLKFGYHFTQQ 163
Score = 32.7 bits (75), Expect = 0.23
Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 16/99 (16%)
Query: 128 LESLNLRGNSIT----ELYSGVFQYVPKLQVLDLGSNDV----AYMDPEIFKNLTSLRIL 179
++ ++ G + + + L+ L++ SN + E ++ TSL L
Sbjct: 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL 126
Query: 180 NLDHNQL-------INLTRAIFNNVPNLRSLDISGNNIS 211
+D+ + + + N L
Sbjct: 127 RIDNQSQPLGNNVEMEIANMLEKN-TTLLKFGYHFTQQG 164
Score = 29.2 bits (66), Expect = 2.9
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 15/113 (13%)
Query: 119 KDIFKGTPQLESLNL-RGNSITE----LYSGVFQYVPKLQVLDLGSN----DVAYMDPEI 169
K I P LE +NL +I + + ++ + VA+ E+
Sbjct: 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM 88
Query: 170 FKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNISILPSGV 217
K +L+ LN++ N + + L A+ +N +L L I + + +
Sbjct: 89 LKVNNTLKSLNVESNFISGSGILALVEALQSN-TSLIELRIDNQSQPLGNNVE 140
Score = 29.2 bits (66), Expect = 3.5
Identities = 9/99 (9%), Positives = 30/99 (30%), Gaps = 12/99 (12%)
Query: 369 LNSLDLSWNQLEQINLIAF-DGL---SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
+ + + A + L ++L ++++ N ++ L+ +L +
Sbjct: 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL 126
Query: 425 NLSYNRISSLFDDWISSM-------TSLKELDLRHNNFS 456
+ L ++ + T+L +
Sbjct: 127 RIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 36.4 bits (84), Expect = 0.015
Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 12/134 (8%)
Query: 357 LENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK 416
E+ T L ++ N +S ++ + + A + L++ ++ E + ++
Sbjct: 37 REDDTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIE 95
Query: 417 QCVNLETINLSYNRISSLFDDWISSM----TSLKELDLRHNNFSFIPDQL-----DSIVS 467
+L +N+ N ++ + S+ E + S + +Q+ +I
Sbjct: 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE 155
Query: 468 NK--LTLDLSFNQI 479
N+ L + +SF +
Sbjct: 156 NESLLRVGISFASM 169
Score = 29.4 bits (66), Expect = 2.5
Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 17/105 (16%)
Query: 121 IFKGTPQLESLNLRGNS--ITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL----- 173
I + + N + + + + L+ +++ N++ + E ++L
Sbjct: 10 IMQSYVPRIVPDEPDNDTDVESCINRLREDDTDLKEVNI--NNMKRVSKERIRSLIEAAC 67
Query: 174 --TSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
+ +L + + L I + P+LR L++ N ++
Sbjct: 68 NSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLT 111
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 33.7 bits (77), Expect = 0.11
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 361 TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQ-CV 419
T + + ++D + + + I +GL + + L D S L+
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK 114
Query: 420 NLETINLSYN-RISSLFDDWISSMTSLKELDLRH 452
++ + + ++ + +LK L L
Sbjct: 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148
Score = 32.9 bits (75), Expect = 0.16
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN---LTR--AIFNNVPNLRSLDI 205
K+Q +D + + + + + L + + L I L R + N ++ ++I
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 206 SGNNISILPSGV--FSDLRKLQT 226
++ G+ R L+
Sbjct: 122 ISCG-NVTDKGIIALHHFRNLKY 143
Score = 32.1 bits (73), Expect = 0.30
Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 405 FDEYQYGYSPLK----QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
+Q Y+ L ++ I+ + + I S+ D + + ++++ L +
Sbjct: 43 QQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96
Score = 29.0 bits (65), Expect = 3.2
Identities = 12/88 (13%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL-----RILNLD 182
+++++ + I + + + ++ + L Y++ + L+ L +L ++
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRL--CKCHYIEDGCLERLSQLENLQKSMLEME 120
Query: 183 HNQLINLTRAIFN---NVPNLRSLDISG 207
N+T + NL+ L +S
Sbjct: 121 IISCGNVTDKGIIALHHFRNLKYLFLSD 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.77
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 17/42 (40%)
Query: 257 KDSLKELPSGL--FANLPLLNTVILGESSIAELPSDLFWNST 296
K +LK+L + L +A +S+ P+ L +T
Sbjct: 19 KQALKKLQASLKLYA--D--------DSA----PA-LAIKAT 45
Score = 29.9 bits (66), Expect = 1.7
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 329 QRNKLKYLPENLFESLKELY------TLNLKNNQLE 358
++ LK L + SLK LY L + +E
Sbjct: 18 EKQALKKL-QA---SLK-LYADDSAPALAI-KATME 47
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; methionine, synthase,
methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis
thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A
1u22_A*
Length = 765
Score = 31.3 bits (71), Expect = 1.2
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 81 AFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITE 140
++ S + VL YF + + L+ K +T D+ +GT L+ +
Sbjct: 228 ELESTLSGLNVLVETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKY 287
Query: 141 LYSGV 145
L++GV
Sbjct: 288 LFAGV 292
>1r8o_A STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor,
beta-trefoil fold, hydrolase inhibitor; 1.83A
{Copaifera langsdorffii} SCOP: b.42.4.1
Length = 96
Score = 28.3 bits (63), Expect = 2.4
Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 25/79 (31%)
Query: 9 LRLTKRSNSLEIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISL 68
L L K C V S SNG LP V F P +IS+
Sbjct: 30 LVLAKSGGE---KCPLSVVQSPSELSNG-----LP---------VRFK--ASPRSKYISV 70
Query: 69 FSKLNITTINTLAFSNSPS 87
L I SP
Sbjct: 71 GMLLGIE------VIESPE 83
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal
binding protein, structural genomics, NPPSFA; 2.21A
{Pyrococcus horikoshii}
Length = 342
Score = 28.7 bits (63), Expect = 6.0
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 20/160 (12%)
Query: 536 KTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSS 595
K + + + +T+ C+ GI+S R +T C C + C
Sbjct: 43 KLCHWLKKSLTEGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNC------------IFCWR 90
Query: 596 ASLTHMPDYLPVTYEDKKATSIQLI-LHNNSINHFLESP---PESYKLITDLDLSYNNIS 651
+ LP ++D + I + + +P + ++ + + ++S
Sbjct: 91 PMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLS 150
Query: 652 HVDTMYPYLNHL-ELIDSEKIICHGSTKPLNGILLKNIQN 690
+YPY+ L E T NG + + ++
Sbjct: 151 GEPMLYPYMGDLVEEFHKRGFTTFIVT---NGTIPERLEE 187
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A
{Methanocaldococcus jannaschii}
Length = 311
Score = 28.7 bits (63), Expect = 7.1
Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 19/170 (11%)
Query: 528 RFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARC-YCNFSPYY 586
+ K + + + ++ C+ + GI + R T C C +C
Sbjct: 16 QIDGHTAVKLCGWVRKKMLEDKNCYKSKFYGIETHRCIQCTPSVIWCQQNCIFCWRVL-- 73
Query: 587 SIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLI-LHNNSINHFLESPPESYKLITDLDL 645
+ +E+ + +++ +H I + + L
Sbjct: 74 -------PRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEAL 126
Query: 646 SYNNISHVD----TMYPYLNHL-ELIDSEKIICHGSTKPLNGILLKNIQN 690
+++ T+YPYL+ L ++ + NGIL I+
Sbjct: 127 EPKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVS---NGILTDVIEK 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,061,667
Number of extensions: 599360
Number of successful extensions: 8483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2144
Number of HSP's successfully gapped: 898
Length of query: 693
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 593
Effective length of database: 3,909,693
Effective search space: 2318447949
Effective search space used: 2318447949
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)