RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8029
(693 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 86.6 bits (213), Expect = 4e-19
Identities = 63/299 (21%), Positives = 123/299 (41%), Gaps = 25/299 (8%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
LR++ L + + + P+ LD+ N I+ + G F +L+ L T +N+
Sbjct: 11 HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67
Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
FA + L+ + +S ++ LKELP + L L E+ I ++ +F
Sbjct: 68 SKISPGAFAPLVKLERLYLSKNQ--LKELPEKMPKTLQELRV---HENEITKVRKSVFNG 122
Query: 295 STNITNIVLTGHK-KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
+ + L + K + + + F+ KKL + + + +P+ L SL EL+ L
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LD 179
Query: 354 NNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYG 411
N++ + SL GL+ L L LS+N + ++ + L + L++N L
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239
Query: 412 YSPLKQCVNLETINLSYNRISSLFDD------WISSMTSLKELDLRHNNFSFIPDQLDS 464
++ + L N IS++ + + + S + L N + Q +
Sbjct: 240 -----DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293
Score = 85.5 bits (210), Expect = 9e-19
Identities = 59/283 (20%), Positives = 111/283 (39%), Gaps = 18/283 (6%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
P L+L+ N ITE+ G F+ + L L L +N ++ + P F L L L L NQ
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
L L + + + L + N I+ + VF+ L ++ +N + + A
Sbjct: 91 LKELPEKMPKTL---QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
++ I ++ +P GL +L L+ L + I ++ + N+ +
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNL-AKLGLS 203
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--- 362
++++ + + L +L L NKL +P L K + + L NN + I S
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDF 262
Query: 363 -----LVGLSGLNSLDLSWNQLEQINLI--AFDGLSSLNTVDL 398
+ + + L N ++ + F + V L
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
Score = 52.0 bits (123), Expect = 1e-07
Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 27/172 (15%)
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIA 386
L+ +P++L L+L+NN++ I L L++L L N++ +I+ A
Sbjct: 18 SDLGLEKVPKDLPPDTA---LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74
Query: 387 FDGLSSLNTVDLSHNLLT--FDEYQYGYSPLKQCVN-----------------LETINLS 427
F L L + LS N L ++ L+ N + + +
Sbjct: 75 FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134
Query: 428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
+ S + + M L + + N + IP + + L L N+I
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIP---QGLPPSLTELHLDGNKI 183
Score = 41.9 bits (97), Expect = 2e-04
Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 12/237 (5%)
Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
+ ++L N+I+ + D ++ +L L L +N S I + + L LS NQ+
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 480 AIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVY 539
+ + P + I + + + + + +
Sbjct: 92 KELP---------EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142
Query: 540 QMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLT 599
L A I ++ T+ S+ +N + L
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA-KLG 201
Query: 600 HMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKL--ITDLDLSYNNISHVD 654
+ + A + L + + N ++ P I + L NNIS +
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 572 KPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLE 631
CP RC C+ V CS L +P LP L L NN I +
Sbjct: 2 PVCPFRCQCHLR------VVQCSDLGLEKVPKDLPPDTA-------LLDLQNNKITEIKD 48
Query: 632 SPPESYKLITDLDLSYNNISHVD 654
++ K + L L N IS +
Sbjct: 49 GDFKNLKNLHTLILINNKISKIS 71
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 78.9 bits (193), Expect = 3e-16
Identities = 70/355 (19%), Positives = 124/355 (34%), Gaps = 40/355 (11%)
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
+ LG +V D +L + L D + ++ + NL ++ S N +
Sbjct: 23 EKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQL 78
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
+ + +L KL N+N+ + + D
Sbjct: 79 TDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136
Query: 271 LPLLNTVILGESSIAELPSDLFWNS----------TNITNIVLTGHKKLTSLPSTLFRDC 320
L L + I S+++ L S + N+T + ++
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
L L N++ + + L L+L NQL++I +L L+ L LDL+ NQ+
Sbjct: 197 TNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 254
Query: 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK----------------QCVNLETI 424
NL GL+ L + L N ++ G + L NL +
Sbjct: 255 --NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
L +N IS + +SS+T L+ L +N S + + ++N L NQI
Sbjct: 313 TLYFNNISDI--SPVSSLTKLQRLFFANNKVSDVSSL--ANLTNINWLSAGHNQI 363
Score = 75.0 bits (183), Expect = 5e-15
Identities = 62/359 (17%), Positives = 128/359 (35%), Gaps = 48/359 (13%)
Query: 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
L ++T+ S + ++ L + +D + L +L +N +NQL ++T
Sbjct: 27 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDIT 82
Query: 191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY--- 247
N+ L + ++ N I+ + T + N K+L +
Sbjct: 83 --PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140
Query: 248 -------LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300
+ ++ + L L T+ + S ++
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200
Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
++ + +++ + L +L L N+LK + SL L L+L NNQ+ N+
Sbjct: 201 SLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNL 256
Query: 361 TSLVGLSGLNSLDLSWNQLEQI--------------------NLIAFDGLSSLNTVDLSH 400
L GL+ L L L NQ+ I ++ L +L + L
Sbjct: 257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316
Query: 401 NLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
N ++ SP+ L+ + + N++S + ++++T++ L HN S +
Sbjct: 317 NNIS------DISPVSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLT 367
Score = 61.9 bits (149), Expect = 8e-11
Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 41/238 (17%)
Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
D + LT+L L +NQ+ ++T + NL L ++GN + + + + L
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTN 242
Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
L +N+ + L L + LG +
Sbjct: 243 LTDLDLANNQISNLAP----------------------------LSGLTKLTELKLGANQ 274
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
I+ + +T + + + + K L L L N + + S
Sbjct: 275 ISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327
Query: 344 LKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
L +L L NN++ +++SL L+ +N L NQ+ +L L+ + + L+
Sbjct: 328 LTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS--DLTPLANLTRITQLGLNDQ 383
Score = 49.6 bits (117), Expect = 8e-07
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 87 SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVF 146
+ + GL + ++ L+ N+ L L L N+I+++
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFNNISDISP--V 325
Query: 147 QYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206
+ KLQ L +N V+ D NLT++ L+ HNQ+ +LT N+ + L ++
Sbjct: 326 SSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381
Query: 207 GN 208
Sbjct: 382 DQ 383
Score = 40.8 bits (94), Expect = 5e-04
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
+ +K L + + L ++ TL +++I + L+ L ++ S NQL
Sbjct: 22 AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 79
Query: 381 QINLIAFDGLSSLNTVDLSHN 401
++ L+ L + +++N
Sbjct: 80 --DITPLKNLTKLVDILMNNN 98
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 63.7 bits (153), Expect = 1e-11
Identities = 54/268 (20%), Positives = 101/268 (37%), Gaps = 12/268 (4%)
Query: 214 PSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL 273
P T Q P + A + + + H + + +P+ F
Sbjct: 3 PGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFL-----HGNRISHVPAASFRACRN 57
Query: 274 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 333
L + L + +A + + F + + L+ + +L S+ F +L L L R L
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 334 KYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLS 391
+ L LF L L L L++N L+ + + L L L L N++ + AF GL
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
SL+ + L N + L T+ L N +S+L + ++ + +L+ L L
Sbjct: 178 SLDRLLLHQN----RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233
Query: 452 HNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
N + + + S +++
Sbjct: 234 DNPWVCDCR-ARPLWAWLQKFRGSSSEV 260
Score = 55.6 bits (132), Expect = 5e-09
Identities = 46/279 (16%), Positives = 94/279 (33%), Gaps = 32/279 (11%)
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL---YTLNLKNNQLENITS 362
+ L ++P + ++ L N++ ++P F + + L + + +++
Sbjct: 20 QQGLQAVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76
Query: 363 LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE 422
QL ++ F GL L+T+ L + G + L+
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR----CGLQELGPGLFRGLAALQ 132
Query: 423 TINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV 482
+ L N + +L DD + +L L L N S +P++ + + L L N++A V
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 483 DLRTLEIKAAAQDPNEDSTMV----------ARSANIVILNDNPIACNCSNYDLIRFVSK 532
+ + R+ + LNDNP C+C L ++
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL-- 250
Query: 533 KMTKTVYQMLELVTDNLECFGNA---GVGINSVRPENLT 568
Q + + C G + + +L
Sbjct: 251 -------QKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
Score = 52.9 bits (125), Expect = 4e-08
Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 9/192 (4%)
Query: 73 NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
I+ + +F + + + F GL ++ + LS N ++ + F
Sbjct: 43 RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102
Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
G +L +L+L + EL G+F+ + LQ L L N + + + F++L +L L L
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162
Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFA 243
N++ ++ F + +L L + N ++ + F DL +L T Y +N P + A
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Query: 244 EMKYLQVIKISY 255
++ LQ ++++
Sbjct: 223 PLRALQYLRLND 234
Score = 48.7 bits (114), Expect = 1e-06
Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 2/182 (1%)
Query: 75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLR 134
+ + + + F + + L N +
Sbjct: 32 AASQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89
Query: 135 GNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIF 194
+ + F + +L L L + + P +F+ L +L+ L L N L L F
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 195 NNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKIS 254
++ NL L + GN IS +P F L L + NR F ++ L + +
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 255 YH 256
+
Sbjct: 210 AN 211
Score = 42.5 bits (98), Expect = 9e-05
Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 4/162 (2%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLI 385
+ L+ +P + + + ++ L N++ ++ + +L + W + I
Sbjct: 16 TSCPQQGLQAVPVGIPAASQRIF---LHGNRISHVPAAS-FRACRNLTILWLHSNVLARI 71
Query: 386 AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSL 445
+ L ++ + L T++L + L + +L
Sbjct: 72 DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131
Query: 446 KELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL 487
+ L L+ N +PD + N L L N+I+ V R
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173
Score = 41.7 bits (96), Expect = 2e-04
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLES 632
PCP C C P + +C L +P +P A S ++ LH N I+H
Sbjct: 1 PCPGACVCYNEPKV---TTSCPQQGLQAVPVGIP-------AASQRIFLHGNRISHV--- 47
Query: 633 PPESYKLITDLDLSYNNISHVDTMYPYLNH 662
P S++ +L + + + + + +
Sbjct: 48 PAASFRACRNLTILWLHSNVLARIDAAAFT 77
Score = 31.3 bits (69), Expect = 0.30
Identities = 34/303 (11%), Positives = 79/303 (26%), Gaps = 35/303 (11%)
Query: 349 TLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
T + L+ + + + + L N++ + +F +L + L N+L +
Sbjct: 15 TTSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73
Query: 409 QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSN 468
++ S+ + L L L + L ++
Sbjct: 74 AAFTGLALLEQL---DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
Query: 469 KLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIR 528
L L N + + +D+ + + L+ N I +
Sbjct: 131 LQYLYLQDNALQALP--------------DDTFRDLGNLTHLFLHGNRI------SSVPE 170
Query: 529 FVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSI 588
+ + +L N + + R L A +P ++
Sbjct: 171 RAFRGLHSLDRLLL---HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227
Query: 589 MSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYN 648
+ + P+ L S + S P+ L+ N
Sbjct: 228 QYLRLNDNPWVCDCRARPL--------WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAAN 279
Query: 649 NIS 651
++
Sbjct: 280 DLQ 282
Score = 27.9 bits (60), Expect = 3.9
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
+ P F L + + L N ++ L + L+ L L N
Sbjct: 192 VHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAW 249
Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
LQ S++V P+ L + L N L
Sbjct: 250 LQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDL 281
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 60.5 bits (145), Expect = 1e-10
Identities = 52/265 (19%), Positives = 84/265 (31%), Gaps = 34/265 (12%)
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
+ LT+LP L +D L L N L L LNL +L +
Sbjct: 19 KRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT 75
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425
L L +LDLS NQL+ + L+ + + L + Q +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE-----LY 130
Query: 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLR 485
L N + +L ++ L++L L +NN + +P L + + N TL L N + +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 486 TLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELV 545
L+ NP CNC R++
Sbjct: 191 FFGSH---------------LLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYV------ 229
Query: 546 TDNLECFGNAGVGINSVRPENLTCD 570
V + ++ CD
Sbjct: 230 -----WKQGVDVKAMTSNVASVQCD 249
Score = 59.3 bits (142), Expect = 3e-10
Identities = 43/211 (20%), Positives = 64/211 (30%), Gaps = 10/211 (4%)
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
+ S +N D L L + + L +S N + +L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS 289
+ L V+ + + L LP L + + + + LP
Sbjct: 63 DRAELTKLQV-----DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 290 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
+ + +L +LP L KL KL L N L LP L L+ L T
Sbjct: 118 GALRGLGELQELY-LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 350 LNLKNNQLENI-TSLVGLSGLNSLDLSWNQL 379
L L+ N L I G L L N
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
Score = 54.7 bits (130), Expect = 1e-08
Identities = 39/209 (18%), Positives = 67/209 (32%), Gaps = 10/209 (4%)
Query: 149 VPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
V ++ ++ + P++ K+ T IL+L N L + A L L++
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 209 NISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF 268
++ L + + + L LP G
Sbjct: 66 ELTK-----LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
L L + L + + LP L + + + + LT LP+ L + L L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKL-EKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQL 357
Q N L +P+ F L L N
Sbjct: 180 QENSLYTIPKGFF-GSHLLPFAFLHGNPW 207
Score = 46.2 bits (108), Expect = 6e-06
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 9/196 (4%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
+ +T L D+ K L+L N + +L L+L + ++
Sbjct: 18 DKRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQV 72
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
L L L+L HNQ + + +P L LD+S N ++ LP G L +LQ Y
Sbjct: 73 DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS 289
N + P L L+ + ++ + + ELP+GL L L+T++L E+S+ +P
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 290 DLFWNSTNITNIVLTG 305
F S + L G
Sbjct: 190 GFF-GSHLLPFAFLHG 204
Score = 44.3 bits (103), Expect = 2e-05
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
+T L +G +L+ L L+GN + L G+ PKL+ L L +N++ + +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
L +L L L N L + + F + L + GN
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGN 205
Score = 40.9 bits (94), Expect = 3e-04
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 138 ITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNV 197
+T L G + + +LQ L L N++ + P + L L+L +N L L + N +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 198 PNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
NL +L + N++ +P G F L + + N +
Sbjct: 172 ENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL 208
Score = 38.5 bits (88), Expect = 0.002
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 580 CNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKL 639
C S S + VNC +LT +P LP + L L N + F + Y
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLP-------KDTTILHLSENLLYTFSLATLMPYTR 56
Query: 640 ITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICH 674
+T L+L + + L L +D
Sbjct: 57 LTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQLQ 90
Score = 37.0 bits (84), Expect = 0.005
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
++S V+ LT P + ++LS N + + + T L
Sbjct: 6 VSKVASHLEVNCDKRNLT-------ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLT 58
Query: 447 ELDLRHNNF 455
+L+L
Sbjct: 59 QLNLDRAEL 67
Score = 32.0 bits (71), Expect = 0.23
Identities = 31/212 (14%), Positives = 56/212 (26%), Gaps = 14/212 (6%)
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
+S + S E++ N + +P L + L LS N + L TL N
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 499 DSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTD--NLECFGNAG 556
D + + L N + + + + +L G
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 557 VGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATS 616
+G P ++ N + + + L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT------ 176
Query: 617 IQLILHNNSINHFLESPPESYKLITDLDLSYN 648
L+L NS+ + S+ L L N
Sbjct: 177 --LLLQENSLYTIPKGFFGSHLL-PFAFLHGN 205
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 54.7 bits (131), Expect = 8e-10
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 8/120 (6%)
Query: 349 TLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
L+L + L + L L + LDLS N+L + A L L + S N
Sbjct: 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDN------A 54
Query: 409 QYGYSPLKQCVNLETINLSYNRISSLFD-DWISSMTSLKELDLRHNNFSFIPDQLDSIVS 467
+ L+ + L NR+ + S L L+L+ N+ + +
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114
Score = 42.8 bits (100), Expect = 1e-05
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
HK LT L + L+L N+L+ LP +L+ L L +N LEN+ +
Sbjct: 7 HKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGVAN 63
Query: 366 LSGLNSLDLSWNQLEQINLI-AFDGLSSLNTVDLSHNLLTFDE 407
L L L L N+L+Q I L ++L N L +E
Sbjct: 64 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
Score = 38.5 bits (89), Expect = 4e-04
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
L+H +T L + + L+L N + L + L+VL N + +D
Sbjct: 5 LAHKD-LTVL--CHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG 60
Query: 168 EIFKNLTSLRILNLDHNQLINL-TRAIFNNVPNLRSLDISGNNISILPS 215
+ L L +N+L + P L L++ GN++
Sbjct: 61 VANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
Score = 36.6 bits (84), Expect = 0.002
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
R+L+L H L L + + LD+S N + LP + LR L+ A+ N +
Sbjct: 1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57
Query: 237 FPKDLFAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPS 289
++ ++ + L++ + + P L + L +S+ +
Sbjct: 58 VD----GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
Score = 30.1 bits (67), Expect = 0.34
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 94 PPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITE---LYSGVFQYVP 150
L ++ +LL +N+ P+L LNL+GNS+ + + + + +P
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 151 KLQVL 155
+ +
Sbjct: 118 SVSSI 122
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 52.2 bits (124), Expect = 1e-08
Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 1/135 (0%)
Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
+ + + +L+L+ K+ + ENL +L + ++ +N++ + L L +L ++
Sbjct: 14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN 72
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
N++ +I L L + L++N L + LK L +
Sbjct: 73 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132
Query: 437 DWISSMTSLKELDLR 451
I + ++ LD +
Sbjct: 133 YVIYKVPQVRVLDFQ 147
Score = 40.3 bits (93), Expect = 2e-04
Identities = 22/134 (16%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181
+ + L+LRG I + + + + +D N++ +D F L L+ L +
Sbjct: 14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLV 70
Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKD- 240
++N++ + + +P+L L ++ N++ L K T+ K
Sbjct: 71 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130
Query: 241 ---LFAEMKYLQVI 251
+ ++ ++V+
Sbjct: 131 RLYVIYKVPQVRVL 144
Score = 38.8 bits (89), Expect = 6e-04
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 352 LKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYG 411
L +E LDL ++ I + L + +D S N + +
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKLDGFPL 61
Query: 412 YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
L+T+ ++ NRI + + ++ L EL L +N+ +
Sbjct: 62 ------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 103
Score = 38.8 bits (89), Expect = 7e-04
Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 5/134 (3%)
Query: 194 FNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
+ N R LD+ G I ++ + + L + + N + F ++ L+ + +
Sbjct: 14 YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLV 70
Query: 254 SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 313
+ ++ + GL LP L +IL +S+ EL S + +T+
Sbjct: 71 NNNRI--CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128
Query: 314 STLFRDCKKLVKLE 327
K+ ++
Sbjct: 129 HYRLYVIYKVPQVR 142
Score = 31.4 bits (70), Expect = 0.20
Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 8/140 (5%)
Query: 91 VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVP 150
+ + + + L K I + +++ Q ++++ N I +L F +
Sbjct: 8 IEQAAQYTNAVRDRELDLRGYK-IPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FPLLR 63
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNV-PNLRSLDISGNN 209
+L+ L + +N + + + + L L L L +N L+ L +L L I N
Sbjct: 64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123
Query: 210 ISILP---SGVFSDLRKLQT 226
++ V + +++
Sbjct: 124 VTNKKHYRLYVIYKVPQVRV 143
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 53.5 bits (127), Expect = 2e-08
Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 20/228 (8%)
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
+ G ++V D +L + L+ + + + NL L++ N I
Sbjct: 20 NAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQI 75
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
+ L +L K+ + N + + + + D
Sbjct: 76 TDLA--PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
L L I S +A L + + + T + KL L+
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLS-----------IGNAQVSDLTPLANLSKLTTLKADD 182
Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
NK+ + SL L ++LKNNQ+ +++ L S L + L+ NQ
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT-NQ 227
Score = 51.6 bits (122), Expect = 8e-08
Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 21/235 (8%)
Query: 168 EIF--KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225
IF L + + + + + ++ + +L G ++ + L L
Sbjct: 11 VIFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLI 66
Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
N+ + + K+ L L +T I + +
Sbjct: 67 GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI---TDVT 123
Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLK 345
L + +T L L + + + +L
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI----------GNAQVSDLTPLANLS 173
Query: 346 ELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSH 400
+L TL +N++ +I+ L L L + L NQ+ ++ S+L V L++
Sbjct: 174 KLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS--DVSPLANTSNLFIVTLTN 226
Score = 37.3 bits (85), Expect = 0.004
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 375 SWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434
S + +L LS L T+ N ++ SPL NL ++L N+IS +
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKIS------DISPLASLPNLIEVHLKNNQISDV 210
Query: 435 FDDWISSMTSLKELDLRH 452
+++ ++L + L +
Sbjct: 211 SP--LANTSNLFIVTLTN 226
Score = 35.8 bits (81), Expect = 0.012
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 342 ESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
+L + + + + + L G+ +L + I L++L ++L N
Sbjct: 16 PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDN 73
Query: 402 LLTFDEYQ 409
+T
Sbjct: 74 QITDLAPL 81
Score = 35.0 bits (79), Expect = 0.019
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
L + ++ +L +L N I+++ +P L +
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEV 200
Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDH 183
L +N ++ + P N ++L I+ L +
Sbjct: 201 HLKNNQISDVSP--LANTSNLFIVTLTN 226
Score = 34.2 bits (77), Expect = 0.031
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 412 YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT 471
+PL L T+ N+IS + ++S+ +L E+ L++N S + + SN
Sbjct: 166 LTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221
Query: 472 LDLSFNQ 478
+ L+ NQ
Sbjct: 222 VTLT-NQ 227
Score = 33.1 bits (74), Expect = 0.089
Identities = 7/74 (9%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE 447
L++ + + +T + T++ ++++ + + + +L
Sbjct: 16 PALANAIKIAAGKSNVT------DTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIG 67
Query: 448 LDLRHNNFSFIPDQ 461
L+L+ N + +
Sbjct: 68 LELKDNQITDLAPL 81
Score = 26.9 bits (58), Expect = 7.2
Identities = 24/229 (10%), Positives = 61/229 (26%), Gaps = 43/229 (18%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
+ +L+ G +T + E + L +L L L NQ
Sbjct: 41 DGITTLSAFGTGVTTI--------------------------EGVQYLNNLIGLELKDNQ 74
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
+ + + NL + + + L + + ++ L
Sbjct: 75 ITD-----LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129
Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
+ ++ L + N + +T +
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ-------VSDLTPLANLSKLT-TLKAD 181
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
K++ + L+++ L+ N++ + + L+ + L N
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 52.1 bits (123), Expect = 9e-08
Identities = 47/312 (15%), Positives = 92/312 (29%), Gaps = 19/312 (6%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
L L++ L +L P+L SL S N+++ LP + L+ L N
Sbjct: 38 RQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKA 92
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
P L ++ + L N L L S +
Sbjct: 93 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
+ S L + ++L L T+
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212
Query: 354 NNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYS 413
NN L+ + L ++ ++ + L + + L + Y S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272
Query: 414 PLKQCV------NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS 467
+ +LE +N+S N++ L + L+ L N+ + +P+ ++
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPELPQNLK- 327
Query: 468 NKLTLDLSFNQI 479
L + +N +
Sbjct: 328 ---QLHVEYNPL 336
Score = 49.8 bits (117), Expect = 6e-07
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 374 LSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
N D SL +++S+N L LE + S+N ++
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI--------ELPALPPRLERLIASFNHLAE 318
Query: 434 LFDDWISSMTSLKELDLRHNNFSFIPDQLDSI 465
+ + +LK+L + +N PD +S+
Sbjct: 319 VPE----LPQNLKQLHVEYNPLREFPDIPESV 346
Score = 49.4 bits (116), Expect = 8e-07
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 132 NLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR 191
N+ + + P L+ L++ +N + E+ L L N L +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLAEVPE 321
Query: 192 AIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225
NL+ L + N + P + + L+
Sbjct: 322 LP----QNLKQLHVEYNPLREFPD-IPESVEDLR 350
Score = 47.1 bits (110), Expect = 4e-06
Identities = 52/332 (15%), Positives = 103/332 (31%), Gaps = 32/332 (9%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
Q L L ++ L P L+ L N + + PE+ ++L SL + N + L
Sbjct: 39 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKAL 93
Query: 187 INLTRAIFNNVPN------------LRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
+L + + L I + + L N+
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
++ + + S K L + + ++ L + N
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
+ T L + ++ D +L + + + + L E LY LN +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 355 NQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP 414
N+ + L L++S N+L ++ L + S N L
Sbjct: 274 NE--IRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLA--------EV 319
Query: 415 LKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
+ NL+ +++ YN + D S+ L+
Sbjct: 320 PELPQNLKQLHVEYNPLREF-PDIPESVEDLR 350
Score = 46.0 bits (107), Expect = 1e-05
Identities = 50/346 (14%), Positives = 91/346 (26%), Gaps = 31/346 (8%)
Query: 320 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQL 379
++ +LEL L LPE L +L N L + L L SL + N L
Sbjct: 37 DRQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNL 90
Query: 380 EQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI 439
+ ++ DL L L + N + + +SL
Sbjct: 91 KALS-------------DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD 137
Query: 440 SSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNED 499
+ + Q ++ + S ++ + L I A E
Sbjct: 138 LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 197
Query: 500 STMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGI 559
+ I DN + + + + EL + +
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257
Query: 560 NSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQL 619
S+ +N S+ L +P P +L
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP--------RLERL 309
Query: 620 ILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLEL 665
I N + PE + + L + YN + + + L +
Sbjct: 310 IASFNHLAEV----PELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351
Score = 46.0 bits (107), Expect = 1e-05
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
+ + + + P LE LN+ N + EL + P+L+ L N +A E+
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLA----EV 319
Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLR 201
+ +L+ L++++N L I +V +LR
Sbjct: 320 PELPQNLKQLHVEYNPLREFP-DIPESVEDLR 350
Score = 39.4 bits (90), Expect = 0.001
Identities = 33/285 (11%), Positives = 74/285 (25%), Gaps = 39/285 (13%)
Query: 415 LKQCV--NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472
L+ C+ + L+ +SSL + L+ L N+ + +P+ S+ S +
Sbjct: 32 LRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQSLKSLLVDN 87
Query: 473 DLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532
+ + L + Q + I+ +++N + + F++
Sbjct: 88 NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147
Query: 533 KMTKTVYQMLELVTDNLECFGNAGVGIN-------------------------------- 560
+ L +
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207
Query: 561 SVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLI 620
++ +N T P + + ++ D + L
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267
Query: 621 LHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLEL 665
N S N L +L++S N + + + P L L
Sbjct: 268 YLNASSNEIRSLCDLPPSL-EELNVSNNKLIELPALPPRLERLIA 311
Score = 38.3 bits (87), Expect = 0.003
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 95 PYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154
D ++ + +S+NK ++ P+LE L N + E+ + L+
Sbjct: 278 SLCDLPPSLEELNVSNNK-----LIELPALPPRLERLIASFNHLAEV----PELPQNLKQ 328
Query: 155 LDLGSNDVAYMDPEIFKNLTSLRILN 180
L + N + P+I +++ LR+ +
Sbjct: 329 LHVEYNPLREF-PDIPESVEDLRMNS 353
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 51.1 bits (120), Expect = 1e-07
Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 6/230 (2%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
S R+ +++ + + N L + ++ G FS L+ + N
Sbjct: 9 SNRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65
Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
+ ++L + F NLP L +++ + I LP +
Sbjct: 66 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLV-KLELQRNKLKYLPENLFESLKELYTLNLK 353
S + + + + ++ F L L +N ++ + F +
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185
Query: 354 NNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
NN LE + G SG LD+S ++ + + L L +
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
Score = 49.9 bits (117), Expect = 3e-07
Identities = 33/235 (14%), Positives = 77/235 (32%), Gaps = 6/235 (2%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
+ + +TE+ S + L + + F L + + N ++ +
Sbjct: 12 VFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68
Query: 190 TRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQ 249
A + ++L + Y + + ++ LQ
Sbjct: 69 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128
Query: 250 VIKISYHKDSLKELPSGLFANLPLLNTVILG-ESSIAELPSDLFWNSTNITNIVLTGHKK 308
+ + + +VIL + + + +N T + + L+ +
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188
Query: 309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL 363
L LP+ +F V L++ R ++ LP E+LK+L + L+ + +L
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTL 241
Score = 40.3 bits (92), Expect = 4e-04
Identities = 20/85 (23%), Positives = 33/85 (38%)
Query: 101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN 160
F IL + I +H F GT E N++ EL + VF +LD+
Sbjct: 152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 211
Query: 161 DVAYMDPEIFKNLTSLRILNLDHNQ 185
+ + +NL LR + + +
Sbjct: 212 RIHSLPSYGLENLKKLRARSTYNLK 236
Score = 39.9 bits (91), Expect = 6e-04
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 415 LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
+++S RI SL + ++ L+ N +P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239
Score = 36.0 bits (81), Expect = 0.009
Identities = 27/218 (12%), Positives = 65/218 (29%), Gaps = 4/218 (1%)
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
+ E+PS L N L + + + F ++ I ++ + L + + +F
Sbjct: 19 KVTEIPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 75
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ-LENITSLVGLSGLNSLDLSWN 377
+ KL ++ +++ L +N ++++ + + L + L
Sbjct: 76 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 135
Query: 378 QLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD 437
I+ I + L+ + L + E N + L +D
Sbjct: 136 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPND 195
Query: 438 WISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS 475
+ LD+ +P +
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
Score = 32.2 bits (71), Expect = 0.18
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 574 CPAR-CYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLES 632
C R C+C+ C + +T +P LP +I+L + +
Sbjct: 1 CHHRICHCSNR------VFLCQESKVTEIPSDLP-------RNAIELRFVLTKLRVIQKG 47
Query: 633 PPESYKLITDLDLSYNNISHVDTMYPYLNH 662
+ + +++S N++ V + N
Sbjct: 48 AFSGFGDLEKIEISQNDVLEVIEADVFSNL 77
Score = 31.8 bits (70), Expect = 0.20
Identities = 23/228 (10%), Positives = 58/228 (25%), Gaps = 9/228 (3%)
Query: 444 SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMV 503
S + + + + IP + N + L ++ ++ + +
Sbjct: 9 SNRVFLCQESKVTEIPS---DLPRNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQN 63
Query: 504 ARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVR 563
I + + + +Q L + L + +
Sbjct: 64 DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123
Query: 564 PENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHN 623
+L + S + ++ S L + + + + L+
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183
Query: 624 NSINHFLESPPESYKL---ITDLDLSYNNISHV-DTMYPYLNHLELID 667
+ N+ E P + + LD+S I + L L
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 231
Score = 31.4 bits (69), Expect = 0.26
Identities = 7/64 (10%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
S + +T P N + ++ + S L+++++
Sbjct: 9 SNRVFLCQESKVT-------EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS 61
Query: 452 HNNF 455
N+
Sbjct: 62 QNDV 65
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 51.9 bits (122), Expect = 2e-07
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 369 LNSLDLSWNQLEQINLIA-FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
+ SLD+ +L L V L LT + S L+ L +NL
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 428 YNRIS-----SLFDDWISSMTSLKELDLRHNNFSFIPDQ 461
N + + + +++L L++ +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102
Score = 50.0 bits (117), Expect = 6e-07
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS-----SLFDDWISS 441
S L + L+ ++ + L +L ++LS N + L +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 442 MTSLKELDLRHNNFSF-IPDQLDSIVSNKLTLD 473
L++L L +S + D+L ++ +K +L
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457
Score = 44.6 bits (103), Expect = 3e-05
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 152 LQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDI 205
+Q LD+ +++ E+ L +++ LD L +++ A+ N P L L++
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNL 62
Query: 206 SGNNIS-----ILPSGVFSDLRKLQTFYANSNRFQMF 237
N + + G+ + K+Q +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 99
Score = 44.2 bits (102), Expect = 4e-05
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 135 GNSITELYSGVFQYVPKLQVLDLGSNDV----AYMDPEIFKNLTSLRILNLDHNQL---- 186
+ EL G+ Q L+VL L DV SLR L+L +N L
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413
Query: 187 -INLTRAIFNNVPNLRSLDISGNNIS 211
+ L ++ L L + S
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWS 439
Score = 41.9 bits (96), Expect = 2e-04
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 12/96 (12%)
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS----SLFDDWISSMTSLKE 447
+ ++D+ L+ + L + + L ++ + +L E
Sbjct: 3 DIQSLDIQCEELSDARWA---ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59
Query: 448 LDLRHNNFS-----FIPDQLDSIVSNKLTLDLSFNQ 478
L+LR N + L + L L
Sbjct: 60 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
Score = 40.3 bits (92), Expect = 7e-04
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 323 LVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENI------TSLVGLSGLNSLDLS 375
+ L++Q +L L L++ + L + L ++L L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 376 WNQLEQINLIAF-----DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN 429
N+L + + + + L + LT S L+ L+ ++LS N
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Score = 39.6 bits (90), Expect = 0.001
Identities = 7/67 (10%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 419 VNLETINLSYNRISSL-FDDWISSMTSLKELDLRHNNFS-----FIPDQLDSIVSNKLTL 472
++++++++ +S + + + + + + L + I L + L
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA-EL 60
Query: 473 DLSFNQI 479
+L N++
Sbjct: 61 NLRSNEL 67
Score = 38.8 bits (88), Expect = 0.002
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 409 QYGYSPLKQCVNLETINLSYNRIS----SLFDDWISSMTSLKELDLRHNNFS-----FIP 459
+ + L + L+ +S S + + SL+ELDL +N +
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418
Query: 460 DQLDSIVSNKLTLDLSFNQI 479
+ + L L
Sbjct: 419 ESVRQPGCLLEQLVLYDIYW 438
Score = 38.4 bits (87), Expect = 0.002
Identities = 11/112 (9%), Positives = 30/112 (26%), Gaps = 25/112 (22%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
++ + + + ++ Q + + L +TE
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI---------------- 47
Query: 163 AYMDPEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNN 209
+ +L LNL N+L + + + ++ L +
Sbjct: 48 ----SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
Score = 35.0 bits (78), Expect = 0.035
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 11/95 (11%)
Query: 341 FESLKELYTLNLKNNQLENI------TSLVGLSGLNSLDLSWNQLEQINLIAF-----DG 389
+ L L L + + + +L+ L LDLS N L ++
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
L + L + + + K +L I
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 33.0 bits (73), Expect = 0.12
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 12/96 (12%)
Query: 96 YFDGLHFVKHILLSHNK---EITGLHKDIFKGTPQLESLNLRGNSITE-----LYSGVFQ 147
++ + L+ L L+L N + + L V Q
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 148 YVPKLQVLDLGSNDVAYMDP----EIFKNLTSLRIL 179
L+ L L + + K+ SLR++
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 31.1 bits (68), Expect = 0.49
Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 199 NLRSLDISGNNISILP-SGVFSDLRKLQTFYANSNRFQMFPKDLFAEM----KYLQVIKI 253
+++SLDI +S + + L++ Q + + L + +
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 254 SYHK---DSLKELPSGLFANLPLLNTVIL 279
++ + + GL + + L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
Score = 28.4 bits (61), Expect = 3.1
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 314 STLFRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLENIT 361
+ L +L+L N L L E++ + L L L +
Sbjct: 390 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 442
Score = 28.4 bits (61), Expect = 3.6
Identities = 49/382 (12%), Positives = 98/382 (25%), Gaps = 22/382 (5%)
Query: 279 LGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTLFRDCKKLVKLELQRNKL- 333
L ++ AEL L + L + + S L R L +L L+ N+L
Sbjct: 14 LSDARWAELLPLL----QQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELG 68
Query: 334 ----KYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDG 389
+ + L ++ L+L+N L V S L +L NL+ G
Sbjct: 69 DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 128
Query: 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELD 449
L L L S L + +
Sbjct: 129 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI------- 181
Query: 450 LRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANI 509
+ L L L + + R L A++ + + +
Sbjct: 182 -NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240
Query: 510 VILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTC 569
V + + + L + T +L + + +
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300
Query: 570 DTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHF 629
+ S + ++A +H L + L + +
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360
Query: 630 LESPPESYKLITDLDLSYNNIS 651
+ + ++ L L+ ++S
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVS 382
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 51.0 bits (120), Expect = 2e-07
Identities = 46/317 (14%), Positives = 92/317 (29%), Gaps = 27/317 (8%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSD----LRKLQTFYAN 230
SL++ + ++ + + +++ + +SGN I + S+ + L+ +
Sbjct: 9 SLKLDAITTEDEKSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
++ ++ L + K L F +
Sbjct: 68 DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127
Query: 291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF-ESLKELYT 349
L N + ++ L + RN+L+ + ++ +
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187
Query: 350 LNLKNNQLENITSLVGLSGLNSLDLSWNQLE--------------QINLIAFDGLSSLNT 395
L+ I L +L+ IA +L
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247
Query: 396 VDLSHNLLTFDEYQYGYSPLKQCVN--LETINLSYNRIS-----SLFDDWISSMTSLKEL 448
+ L+ LL+ + N L+T+ L YN I +L M L L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307
Query: 449 DLRHNNFSFIPDQLDSI 465
+L N FS D +D I
Sbjct: 308 ELNGNRFSEEDDVVDEI 324
Score = 42.6 bits (98), Expect = 1e-04
Identities = 36/283 (12%), Positives = 78/283 (27%), Gaps = 23/283 (8%)
Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS----SLFDDWISSMTSLKE 447
S+ L + +T ++ + ++ L + +++ I LS N I + I+S L+
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 448 LDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSA 507
+ + D++ + L L ++ V L AQ+P D
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Query: 508 NIVIL-----NDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSV 562
+ L A + K + + + LE
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183
Query: 563 RPENL--------TCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKA 614
L + + + ++ + TH+
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243
Query: 615 TSIQLILHNNSINHFLESPPESY------KLITDLDLSYNNIS 651
+L L++ ++ + + L L YN I
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 286
Score = 41.0 bits (94), Expect = 3e-04
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 163 AYMDPEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNISILPSGV 217
A +D L+ L L +N++ L I +P+L L+++GN S V
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD-V 320
Query: 218 FSDLRKL 224
++R++
Sbjct: 321 VDEIREV 327
Score = 36.8 bits (83), Expect = 0.008
Identities = 49/313 (15%), Positives = 99/313 (31%), Gaps = 34/313 (10%)
Query: 128 LESLNLRGNSIT----ELYSGVFQYVPKLQVLDLGSNDV----AYMDPEIFKNLTSLRIL 179
+E +L+ ++IT + V ++ + L N + A E + L I
Sbjct: 5 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
+ I + L + + + + Q + +
Sbjct: 65 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124
Query: 240 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 299
L+ L + +L+EL A I+ + E S W T +
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184
Query: 300 NIVL---------TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL----PENLFESLKE 346
+ +L + + L C++L L+LQ N +L +S
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244
Query: 347 LYTLNLKNNQLE--------NITSLVGLSGLNSLDLSWNQLEQINLIA-----FDGLSSL 393
L L L + L + S + GL +L L +N++E + + + L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304
Query: 394 NTVDLSHNLLTFD 406
++L+ N + +
Sbjct: 305 LFLELNGNRFSEE 317
Score = 31.0 bits (68), Expect = 0.49
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 317 FRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQL-------ENITSLV 364
+ L L LQ N++ + L + E + +L L L N+ + I +
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 328
Query: 365 GLSGLNSLD 373
G LD
Sbjct: 329 STRGRGELD 337
Score = 28.3 bits (61), Expect = 3.3
Identities = 41/310 (13%), Positives = 83/310 (26%), Gaps = 38/310 (12%)
Query: 126 PQLESLNLRGNSIT----ELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181
++ + L GN+I S L++ + + EI + L L L
Sbjct: 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 90
Query: 182 DHNQLINLTRAIFNNVPNLRSLDIS------GNNISILPSGVFSDLRKLQTFYANSNRFQ 235
+L + + P + I L + + A
Sbjct: 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 150
Query: 236 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 295
++ + + S+KE ++ L ++ E L
Sbjct: 151 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 210
Query: 296 -------TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK------YLPENLFE 342
+ T +S + + L +L L L +
Sbjct: 211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 270
Query: 343 SLKELYTLNLKNNQLENITSLV-------GLSGLNSLDLSWNQLEQI--------NLIAF 387
L TL L+ N++E + L L+L+ N+ + + +
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 330
Query: 388 DGLSSLNTVD 397
G L+ +D
Sbjct: 331 RGRGELDELD 340
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 46.0 bits (108), Expect = 2e-06
Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 4/138 (2%)
Query: 327 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIA 386
EL+ +++ L + + L L + LV + L+ + + +I
Sbjct: 3 ELKPEQVEQLKLIM-SKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRII- 60
Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
+ + L +++LS+N L + +++ NL+ +NLS N + S + L+
Sbjct: 61 EENIPELLSLNLSNNRLYRLDDMSSI--VQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 447 ELDLRHNNFSFIPDQLDS 464
EL L N+ S +
Sbjct: 119 ELWLDGNSLSDTFRDQST 136
Score = 41.0 bits (95), Expect = 1e-04
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD--PEIFKNLTSLRIL 179
LN R + L + + +P+L L+L +N + +D I + +L+IL
Sbjct: 38 LVAQNIDVVLNRRSSMAATL-RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96
Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
NL N+L + L L + GN++S + + +
Sbjct: 97 NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141
Score = 39.8 bits (92), Expect = 3e-04
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSIT--ELYSGVFQYVPKLQVLDLGSNDVAYM 165
L+ + + I + P+L SLNL N + + S + Q P L++L+L N++
Sbjct: 47 LNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 106
Query: 166 DPEIFKNLTSLRILNLDHNQLINLT-------RAIFNNVPNLRSLD 204
L L LD N L + AI P L LD
Sbjct: 107 RELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152
Score = 38.6 bits (89), Expect = 8e-04
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 21/171 (12%)
Query: 351 NLKNNQLENITSLVG-LSGLNSLDLSWNQLEQI-NLIAFDGLSSLNTVDLSHNLLTFDEY 408
LK Q+E + ++ + L L +L+A + LN L E
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIE- 61
Query: 409 QYGYSPLKQCVNLETINLSYNRIS--SLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIV 466
+ L ++NLS NR+ + +LK L+L N +
Sbjct: 62 -------ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 114
Query: 467 SNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPI 517
L L N ++ S + R ++ L+ + +
Sbjct: 115 LKLEELWLDGNSLS---------DTFRDQSTYISAIRERFPKLLRLDGHEL 156
Score = 35.9 bits (82), Expect = 0.005
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
++L+L+G VL+ S+ A + I +N+ L LNL +N+
Sbjct: 22 GSQQALDLKGLRSDP----DLVAQNIDVVLNRRSSMAATL-RIIEENIPELLSLNLSNNR 76
Query: 186 LINLT--RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFA 243
L L +I PNL+ L++SGN + KL+ + + N +D
Sbjct: 77 LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136
Query: 244 EMKYL 248
+ +
Sbjct: 137 YISAI 141
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 44.7 bits (104), Expect = 2e-05
Identities = 45/267 (16%), Positives = 92/267 (34%), Gaps = 16/267 (5%)
Query: 195 NNVPNLRSLDISGNNIS---ILPSGVFSDLRKLQTFY-ANSNRFQMFPKDLFAEMKYLQV 250
+ +LD+SG N+ +PS ++L L Y N A++ L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105
Query: 251 IKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310
+ I++ S + + L T+ ++++ + N+ I G++
Sbjct: 106 LYITHTNVSGAIPDF--LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLN 370
++P + K + + RN+L F +L + +N + + L G
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP--LKQCVNLETINLSY 428
+L +LN +DL +N + G P L Q L ++N+S+
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY------GTLPQGLTQLKFLHSLNVSF 277
Query: 429 NRISSLFDDWISSMTSLKELDLRHNNF 455
N + ++ +N
Sbjct: 278 NNLCGEIPQG-GNLQRFDVSAYANNKC 303
Score = 41.7 bits (96), Expect = 2e-04
Identities = 48/260 (18%), Positives = 83/260 (31%), Gaps = 8/260 (3%)
Query: 124 GTPQLESLNLRGNSITELYS--GVFQYVPKLQVLDLGSND-VAYMDPEIFKNLTSLRILN 180
T ++ +L+L G ++ + Y +P L L +G + + P LT L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 181 LDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKD 240
+ H + + + L +LD S N +S S L L + NR D
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 241 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300
+ L L + LN + S ++
Sbjct: 168 SYGSFSKLFTSMTISR----NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE-N 359
+ K + K L L+L+ N++ LK L++LN+ N L
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 360 ITSLVGLSGLNSLDLSWNQL 379
I L + + N+
Sbjct: 284 IPQGGNLQRFDVSAYANNKC 303
Score = 38.2 bits (87), Expect = 0.003
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS 467
+ + NL ++L NRI ++ + L L++ NN Q ++
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL-Q 291
Query: 468 NKLTLDLSFNQ 478
+ N+
Sbjct: 292 RFDVSAYANNK 302
Score = 34.7 bits (78), Expect = 0.033
Identities = 42/263 (15%), Positives = 81/263 (30%), Gaps = 12/263 (4%)
Query: 172 NLTSLRILNLDHNQLINLTR--AIFNNVPNLRSLDISGN-NISILPSGVFSDLRKLQTFY 228
+ L+L L + N+P L L I G N+ + L +L Y
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 229 ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP 288
D +++K L + SY+ ++LP L + + I+
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNAL--SGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
D + + + + + +LT F + +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 349 TLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
KN+ ++ + LN LDL N++ L L+++++S N L
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC---- 281
Query: 409 QYGYSP-LKQCVNLETINLSYNR 430
G P + + N+
Sbjct: 282 --GEIPQGGNLQRFDVSAYANNK 302
Score = 30.5 bits (67), Expect = 0.67
Identities = 25/239 (10%), Positives = 66/239 (27%), Gaps = 13/239 (5%)
Query: 419 VNLETINLSYNRISSLFD--DWISSMTSLKELDLRHN-NFSFIPDQLDSIVSNKLTLDLS 475
+ ++LS + + ++++ L L + N + ++ L ++
Sbjct: 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 476 FNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMT 535
++ + + S N + P + N I F +++
Sbjct: 110 HTNVSGAIPDF-------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 536 KTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSS 595
+ + + + P S++ + +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 596 ASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESY---KLITDLDLSYNNIS 651
H+ K S L + N + P+ K + L++S+NN+
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 41.7 bits (96), Expect = 1e-04
Identities = 22/183 (12%), Positives = 63/183 (34%), Gaps = 9/183 (4%)
Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
++ L + R I + L ++ N + + S
Sbjct: 9 EGTTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65
Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
+ E + ++ ++ +KE+ + +F L L T+ L ++ I+ + F +
Sbjct: 66 LTGIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
++T++ L + + F + + K L + ++++ +L +
Sbjct: 125 LNSLTSLNLASNPFNCNCHLAWFAEWLR--KKSLNGGAARC---GAPSKVRDVQIKDLPH 179
Query: 355 NQL 357
++
Sbjct: 180 SEF 182
Score = 39.0 bits (89), Expect = 8e-04
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 13/192 (6%)
Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
TV + E+P D+ + T ++L ++ LF LVKLEL+RN+L
Sbjct: 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 335 YLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
+ N FE + L L N+++ I +GL L +L+L NQ+ + +F+ L+S
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452
L +++L+ N + + ++ + +L S + ++ DL H
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV--------RDVQIKDLPH 179
Query: 453 NNFSFIPDQLDS 464
+ F + +
Sbjct: 180 SEFKCSSENSEG 191
Score = 36.7 bits (83), Expect = 0.004
Identities = 29/113 (25%), Positives = 52/113 (46%)
Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
+LL+ N+ +F P L L L+ N +T + F+ +Q L LG N +
Sbjct: 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
+ ++F L L+ LNL NQ+ + F ++ +L SL+++ N +
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143
Score = 36.3 bits (82), Expect = 0.005
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Query: 101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN 160
L +I + +F G QL++LNL N I+ + G F+++ L L+ ++
Sbjct: 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-LAS 135
Query: 161 DVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
+ + + LR +L+ + V +++ D+ +
Sbjct: 136 NPFNCNCHLAWFAEWLRKKSLNGGA---ARCGAPSKVRDVQIKDLPHSE 181
Score = 35.9 bits (81), Expect = 0.007
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
CPA C+C + +V+C+ L +P +P + +L+L++N +
Sbjct: 2 CPAMCHCEGT------TVDCTGRGLKEIPRDIP-------LHTTELLLNDNELGRIS 45
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 41.5 bits (96), Expect = 1e-04
Identities = 29/204 (14%), Positives = 58/204 (28%), Gaps = 19/204 (9%)
Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
+ +L V D L S+ + +++ + ++ +PN+ L ++GN +
Sbjct: 25 ETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKL 80
Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
+ L L+ + H
Sbjct: 81 TD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135
Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
L L + I L ++ ++ + ++ L L L L L +
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK--------LQNLYLSK 187
Query: 331 NKLKYLPENLFESLKELYTLNLKN 354
N + L LK L L L +
Sbjct: 188 NHISDLRA--LAGLKNLDVLELFS 209
Score = 40.4 bits (93), Expect = 3e-04
Identities = 26/205 (12%), Positives = 56/205 (27%), Gaps = 17/205 (8%)
Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
NL + + N + ++ + + ++I + L + + N
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76
Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
N+ A +K L + + +K L L +
Sbjct: 77 GNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134
Query: 291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
+ N + N++ + L +L L
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLE---------DNQISDIVP--LAGLTKLQNL 183
Query: 351 NLKNNQLENITSLVGLSGLNSLDLS 375
L N + ++ +L GL L+ L+L
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELF 208
Score = 35.4 bits (80), Expect = 0.012
Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 36/173 (20%)
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
+ +K L++ + L + + N+ ++++ + L + L L+ N+L
Sbjct: 24 AETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT 81
Query: 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY--------------SPLKQCVNLETINL 426
I +A +D + + L LE++ L
Sbjct: 82 DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141
Query: 427 SYNRISSLFDDW--------------------ISSMTSLKELDLRHNNFSFIP 459
N+I+ + ++ +T L+ L L N+ S +
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR 194
Score = 31.5 bits (70), Expect = 0.27
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGS 159
G +L++L L N I++L + + L VL+L S
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS 209
Score = 30.0 bits (66), Expect = 0.66
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 383 NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
+++ GL+ L + LS N ++ L NL+ + L
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHIS------DLRALAGLKNLDVLELF 208
Score = 28.1 bits (61), Expect = 3.3
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 146 FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181
+ KLQ L L N ++ D L +L +L L
Sbjct: 174 LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 207
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 37.0 bits (84), Expect = 0.004
Identities = 27/207 (13%), Positives = 63/207 (30%), Gaps = 19/207 (9%)
Query: 168 EIF--KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225
+IF L L + + ++ + +L I + L L
Sbjct: 10 QIFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLT 65
Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
++N+ L K + ++ + + L + L + +
Sbjct: 66 QINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 124
Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLK 345
+ ++L + I + L ++ L+ +L
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP------------LANLT 172
Query: 346 ELYTLNLKNNQLENITSLVGLSGLNSL 372
L L++ +N++ +I+ L L+ L SL
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESL 199
Score = 36.2 bits (82), Expect = 0.007
Identities = 26/201 (12%), Positives = 54/201 (26%), Gaps = 19/201 (9%)
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
+ LG +V D +L + L D + ++ + NL ++ S N
Sbjct: 18 AEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQ 73
Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA 269
++ + L+ L ++ P
Sbjct: 74 LTD-----ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128
Query: 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329
NL L + + + ++T L + L +L++
Sbjct: 129 NLNRLELS------SNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 180
Query: 330 RNKLKYLPENLFESLKELYTL 350
NK+ + L L +L
Sbjct: 181 SNKVSDISV--LAKLTNLESL 199
Score = 35.0 bits (79), Expect = 0.018
Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 36/173 (20%)
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
+ +K L + + L ++ TL +++I + L+ L ++ S NQL
Sbjct: 18 AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 75
Query: 381 QINLIA--------------FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
I + ++ L + L F+ PLK NL + L
Sbjct: 76 DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 135
Query: 427 SYNRISSLFDDW--------------------ISSMTSLKELDLRHNNFSFIP 459
S N IS + ++++T+L+ LD+ N S I
Sbjct: 136 SSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS 188
Score = 32.3 bits (72), Expect = 0.14
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKEL 448
PL LE +++S N++S + ++ +T+L+ L
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 199
Score = 30.4 bits (67), Expect = 0.47
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE 447
L+ L +T + T+ I S+ D + + +L +
Sbjct: 15 TALAEKMKTVLGKTNVT------DTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQ 66
Query: 448 LDLRHNNF 455
++ +N
Sbjct: 67 INFSNNQL 74
Score = 27.3 bits (59), Expect = 5.0
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 376 WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
++ + +L L++L +D+S N ++ S L + NLE++
Sbjct: 157 FSSNQVTDLKPLANLTTLERLDISSNKVS------DISVLAKLTNLESL 199
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 34.8 bits (78), Expect = 0.015
Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 2/149 (1%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
L + + + ++ + +++ + L LR L + + L
Sbjct: 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
+ F+ P L L++S N + L L + + N L +
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG-NPLHC-SCALRWLQR 126
Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLN 275
+ + + L+ G A++P +
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155
Score = 32.1 bits (71), Expect = 0.11
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 9/89 (10%)
Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
CP C + + C+ +LP + I + + H
Sbjct: 1 CPDACCP-----HGSSGLRCTRDGALDSLHHLPGAENLTE----LYIENQQHLQHLELRD 51
Query: 634 PESYKLITDLDLSYNNISHVDTMYPYLNH 662
+ +L + + + V +
Sbjct: 52 LRGLGELRNLTIVKSGLRFVAPDAFHFTP 80
Score = 30.9 bits (68), Expect = 0.25
Identities = 21/152 (13%), Positives = 50/152 (32%), Gaps = 19/152 (12%)
Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450
+ + + + + + + +E + + L + + L+ L +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIE----NQQHLQHLELRDLRGLGELRNLTI 63
Query: 451 RHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIV 510
+ F+ L+LSFN + + T+ S +
Sbjct: 64 VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS---------------WKTVQGLSLQEL 108
Query: 511 ILNDNPIACNCSNYDLIRFVSKKMTKTVYQML 542
+L+ NP+ C+C+ L R+ + + Q L
Sbjct: 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 33.2 bits (74), Expect = 0.078
Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 13/230 (5%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTS--LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
Q LDL + + P++ L S + + + F+ ++ +D+S + I
Sbjct: 3 QTLDLTGKN---LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVI 58
Query: 211 SI-LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH---KDSLKELPSG 266
+ G+ S KLQ R + A+ L + +S + +
Sbjct: 59 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118
Query: 267 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 326
+ L LN + + + + S IT + L+G++K + +
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178
Query: 327 ELQRNKLKYLPENLFESL---KELYTLNLKNNQLENITSLVGLSGLNSLD 373
L + L + F+ L L+L +L+ L + +L
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228
Score = 30.1 bits (66), Expect = 0.87
Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 33/134 (24%)
Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG---LSGLNSLDLSWNQLEQ 381
L+L L ++ L + + + L + +DLS + +E
Sbjct: 4 TLDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60
Query: 382 INLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISS 441
L L QC L+ ++L R+S + ++
Sbjct: 61 STLHGI---------------------------LSQCSKLQNLSLEGLRLSDPIVNTLAK 93
Query: 442 MTSLKELDLRHNNF 455
++L L+L +
Sbjct: 94 NSNLVRLNLSGCSG 107
Score = 29.3 bits (64), Expect = 1.4
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 126 PQLESLNLRGNSIT-ELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
+++ ++L + I G+ KLQ L L ++ ++L LNL
Sbjct: 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105
Query: 185 QLIN 188
+
Sbjct: 106 SGFS 109
Score = 28.1 bits (61), Expect = 3.2
Identities = 36/256 (14%), Positives = 84/256 (32%), Gaps = 26/256 (10%)
Query: 201 RSLDISGNNISILPSGVFSDL--RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD 258
++LD++G N L V L + + F + + F+ + +Q + +S
Sbjct: 3 QTLDLTGKN---LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI 58
Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
+ L + + L +L +++ ++ K ++L
Sbjct: 59 EVSTLHG-ILSQCSKL--------------QNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103
Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
C + + L +L + K+ Q+ ++ LN N
Sbjct: 104 GCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 162
Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSY-NRISSLFDD 437
+ +L +DLS +++ ++ + Q L+ ++LS I
Sbjct: 163 QKSDLSTLVRRCPNLVHLDLSDSVMLKND---CFQEFFQLNYLQHLSLSRCYDIIPETLL 219
Query: 438 WISSMTSLKELDLRHN 453
+ + +LK L +
Sbjct: 220 ELGEIPTLKTLQVFGI 235
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 31.6 bits (70), Expect = 0.24
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 170 FKNLTSLRILNLDHNQLINLTRAI------FNNVPNLRSLDISGNNISILPSGVFSDLRK 223
F+ S+ + +L + I + + + L +S NNI + S S +
Sbjct: 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMEN 71
Query: 224 LQTFYANSNRFQMF 237
L+ N +
Sbjct: 72 LRILSLGRNLIKKI 85
Score = 30.4 bits (67), Expect = 0.52
Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 32/202 (15%)
Query: 283 SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE 342
+I +T + L G ++ + L
Sbjct: 10 AIRIFEERKSVVATEAEKVELHG-----------------------MIPPIEKMDATL-S 45
Query: 343 SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
+LK L L N +E I+SL G+ L L L N +++I + D L
Sbjct: 46 TLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAV-------ADTLEEL 98
Query: 403 LTFDEYQYGYSPLKQCVNLETINLSYNRISS-LFDDWISSMTSLKELDLRHNNFSFIPDQ 461
S +++ VNL + +S N+I++ D ++++ L++L L N +
Sbjct: 99 WISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158
Query: 462 LDSIVSNKLTLDLSFNQIAIVD 483
++ ++ + + +D
Sbjct: 159 NNATSEYRIEVVKRLPNLKKLD 180
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 167
Score = 28.4 bits (62), Expect = 1.9
Identities = 18/135 (13%), Positives = 35/135 (25%), Gaps = 18/135 (13%)
Query: 338 ENLFESLKELYTLNLKNNQL-------ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390
L E +L +N+ N + I + + L+ + L
Sbjct: 8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIEL 67
Query: 391 SS----LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL-------FDDWI 439
L +++ N LT + ++ R S L I
Sbjct: 68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI 127
Query: 440 SSMTSLKELDLRHNN 454
SL + + +
Sbjct: 128 EENESLLRVGISFAS 142
Score = 26.5 bits (57), Expect = 7.5
Identities = 19/138 (13%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 357 LENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK 416
E+ T L ++ +N++ + + + A + L++ ++ E + ++
Sbjct: 11 REDDTDLKEVN-INNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE 69
Query: 417 QCVNLETINLSYNRISSLFDDWISS----MTSLKELDLRHNNFSFIPDQ-----LDSIVS 467
+L +N+ N ++ + S+ E + S + +Q + +I
Sbjct: 70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE 129
Query: 468 NK--LTLDLSFNQIAIVD 483
N+ L + +SF +
Sbjct: 130 NESLLRVGISFASMEARH 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,464,421
Number of extensions: 115828
Number of successful extensions: 792
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 209
Length of query: 693
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 601
Effective length of database: 1,144,436
Effective search space: 687806036
Effective search space used: 687806036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)