BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8031
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P +F E+K L+ + ++ +K L+ LP G+F L L + L + + LP +F + T
Sbjct: 76 LPAGIFKELKNLETLWVTDNK--LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+T + L G+ +L SLP +F L +L L N+LK +PE F+ L EL TL L NNQ
Sbjct: 134 KLTYLSL-GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 122 LENI 125
L+ +
Sbjct: 193 LKRV 196
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P ++ A+ K K+ + L LPS F L L + L ++ + LP+ +F
Sbjct: 31 IPSNIPADTK-----KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
N+ + +T +K L +LP +F L +L L RN+LK LP +F+SL +L L+L N+
Sbjct: 86 NLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144
Query: 122 LENITR 127
L+++ +
Sbjct: 145 LQSLPK 150
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P +F ++ L +++ ++ LK LP +F +L L + LG + + LP +F T
Sbjct: 100 LPIGVFDQLVNLAELRL--DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
++ + L ++ L +P F +L L+L N+LK +PE F+SL++L L L+ N
Sbjct: 158 SLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
N N V KKLT++PS + D K KL+LQ NKL LP F L +L L L +N+
Sbjct: 16 NNKNSVDCSSKKLTAIPSNIPADTK---KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72
Query: 122 LENI 125
L+ +
Sbjct: 73 LQTL 76
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 23 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
+ L+ LP+G+F L L ++L E+ + LP +F TN+T + L H +L SLP +F
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLY-HNQLQSLPKGVF 153
Query: 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L +L+L N+L+ LPE +F+ L +L L+L +NQL+++
Sbjct: 154 DKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 22 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81
++ L+ LP G+F L L + L + + LP +F TN+T + L + +L SLP +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGV 176
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
F +L +L L N+LK +P+ +F+ L L + L NN
Sbjct: 177 FDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
TN+T ++LTG++ L SLP+ +F L +L L N+L+ LP+ +F+ L L L L +N
Sbjct: 85 TNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 121 QLENITR 127
QL+++ +
Sbjct: 144 QLQSLPK 150
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 23 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
+ L+ LP+G+F L L ++L E+ + LP +F TN+T + L H +L SLP +F
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL-AHNQLQSLPKGVF 153
Query: 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L +L+L N+L+ LPE +F+ L +L L L NQL+++
Sbjct: 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 22 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81
++ L+ LP G+F L L + L + + LP +F TN+T + L+ + +L SLP +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPEGV 176
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
F +L L L +N+LK +P+ +F+ L L + L +N
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
TN+T ++LTG++ L SLP+ +F L +L L N+L+ LP+ +F+ L L LNL +N
Sbjct: 85 TNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 121 QLENITR 127
QL+++ +
Sbjct: 144 QLQSLPK 150
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
F + L + + Y++ L+ L +G+F +L L T+ L + +A LP +F + T + +
Sbjct: 55 FRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L G++ L SLPS +F KL +L L N+L+ +P F+ L L TL+L NQL+++
Sbjct: 113 YLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 65
+F ++ L + ++ ++ L LP G+F +L L+ + LG + + LPS +F T +
Sbjct: 78 VFDDLTELGTLGLANNQ--LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 66 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
+ L +L S+P+ F L L L N+L+ +P F+ L +L T+ L NQ +
Sbjct: 136 LRLN-TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 74 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L +L FR KL L L N+L+ L +F+ L EL TL L NNQL ++
Sbjct: 47 LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 72 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
K L S+PS + D +KL +LQ L L + F L +L LNL NQL+ ++
Sbjct: 24 KSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
F + L + + Y++ L+ L +G+F +L L T+ L + +A LP +F + T + +
Sbjct: 55 FRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L G++ L SLPS +F KL +L L N+L+ +P F+ L L TL+L NQL+++
Sbjct: 113 YLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 65
+F ++ L + ++ ++ L LP G+F +L L+ + LG + + LPS +F T +
Sbjct: 78 VFDDLTELGTLGLANNQ--LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 66 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
+ L +L S+P+ F L L L N+L+ +P F+ L +L T+ L NQ +
Sbjct: 136 LRLN-TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 74 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L +L FR KL L L N+L+ L +F+ L EL TL L NNQL ++
Sbjct: 47 LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 72 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
K L S+PS + D +KL +LQ L L + F L +L LNL NQL+ ++
Sbjct: 24 KSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P + A+ YL + +SLK LP+G+F L L + LG + + LP+ +F T+
Sbjct: 23 PTGIPAQTTYLDL-----ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+T + L+ ++ L SLP+ +F +L +L L N+L+ LP+ +F+ L +L L L NQL
Sbjct: 78 LTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 123 ENI 125
+++
Sbjct: 137 KSV 139
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 18 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 77
+ + +P+G+ A L+ L +S+ LP+ +F T++T + L G+K L SL
Sbjct: 12 VECYSQGRTSVPTGIPAQTTYLD---LETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSL 67
Query: 78 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
P+ +F L L L N+L+ LP +F+ L +L L L NQL+++
Sbjct: 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P +F E+ L + + +K L+ LP+G+F L L + L + + LP+ +F T
Sbjct: 43 LPNGVFDELTSLTQLYLGGNK--LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ + L ++ L SLP +F +L L L +N+LK +P+ +F+ L L + L +N
Sbjct: 101 QLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 22 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81
+ L+EL GLF L L + L ++++ LP D F + N+T++ L G +++S+P
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERA 171
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
FR L +L L +N++ ++ + F L L TL L N L +
Sbjct: 172 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 215
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
L+ + F L L+T+ L + EL LF + + L L +LP FRD
Sbjct: 92 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRD 150
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L L L N++ +PE F L L L L N++ ++
Sbjct: 151 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 191
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 22 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81
+ L+EL GLF L L + L ++++ LP D F + N+T++ L G +++S+P
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERA 172
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
FR L +L L +N++ ++ + F L L TL L N L +
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
L+ + F L L+T+ L + EL LF + + L L +LP FRD
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRD 151
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L L L N++ +PE F L L L L N++ ++
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
F + +L + + + L+EL GLF L L + L ++++ LP + F + N+T++
Sbjct: 100 FRGLGHLHTLHLD--RCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
L G ++ S+P FR L +L L +N + + + F L L TL L N L
Sbjct: 158 FLHG-NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
F L L+T+ L + EL LF + + L L +LP FRD L L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NNLQALPDNTFRDLGNLTHLF 158
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L N++ +PE+ F L L L L N + +
Sbjct: 159 LHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARV 191
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 15 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
+ +I ++++K +P G F+ L + L + I+EL D F ++ ++VL G+K +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-I 92
Query: 75 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
T LP +LF L L L NK+ L + F+ L L L+L +N+L+ I +
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
+ P F+ K L+ I +S + + EL F L LN+++L + I ELP LF
Sbjct: 46 VIPPGAFSPYKKLRRIDLS--NNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
++ ++L + K+ L F+D L L L NKL+ + + F L+ + T++L N
Sbjct: 104 FSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 15 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
+ +I ++++K +P G F+ L + L + I+EL D F ++ ++VL G+K +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-I 92
Query: 75 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
T LP +LF L L L NK+ L + F+ L L L+L +N+L+ I +
Sbjct: 93 TELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
+ P F+ K L+ I +S + + EL F L LN+++L + I ELP LF
Sbjct: 46 VIPPGAFSPYKKLRRIDLS--NNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
++ ++L + K+ L F+D L L L NKL+ + + F L+ + T++L N
Sbjct: 104 FSLQLLLLNAN-KINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 15 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
++ + L+ LP G+F L L + L ++ I LP +F T +T I+ KL
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT-ILYLHENKL 88
Query: 75 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
SLP+ +F +L +L L N+LK +P+ +F+ L L + L N
Sbjct: 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 17 KISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS 76
+I + L +P+G+ ++ L L + + LP +F T +T + L+ ++ S
Sbjct: 11 EIRCNSKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLS-QNQIQS 66
Query: 77 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
LP +F KL L L NKL+ LP +F+ L +L L L NQL+++
Sbjct: 67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 18 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 77
+++ ++++LP+ L + + + L + I E+ + F + I + + G + L
Sbjct: 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM-GFNAIRYL 108
Query: 78 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
P +F++ L L L+RN L LP +F + +L TL++ NN LE I
Sbjct: 109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P +F + L V+ + ++ L LP G+F N P L T+ + +++ + D F +T
Sbjct: 108 LPPHVFQNVPLLTVLVLE--RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165
Query: 62 NITNIVLTG----HKKLTSLPS 79
++ N+ L+ H L+ +PS
Sbjct: 166 SLQNLQLSSNRLTHVDLSLIPS 187
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 18 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 77
+++ ++++LP+ L + + + L + I E+ + F + I + + G + L
Sbjct: 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM-GFNAIRYL 114
Query: 78 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
P +F++ L L L+RN L LP +F + +L TL++ NN LE I
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P +F + L V+ + ++ L LP G+F N P L T+ + +++ + D F +T
Sbjct: 114 LPPHVFQNVPLLTVLVLE--RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171
Query: 62 NITNIVLTG----HKKLTSLPS 79
++ N+ L+ H L+ +PS
Sbjct: 172 SLQNLQLSSNRLTHVDLSLIPS 193
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 49 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ +P++L + N++++ L + + +PS LF D + L +E NKL+ +P +F
Sbjct: 135 LTHIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGK 192
Query: 109 LKELYTLNLKNNQLENI 125
+ +L LNL +NQL+++
Sbjct: 193 MPKLKQLNLASNQLKSV 209
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 28/119 (23%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P +L +M+ L +++ + +++E+PS LF +L L ++ G +
Sbjct: 138 IPANLLTDMRNLSHLEL---RANIEEMPSHLFDDLENLESIEFGSN-------------- 180
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
KL +P +F KL +L L N+LK +P+ +F+ L L + L N
Sbjct: 181 -----------KLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 72 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
++LT +P+ L D + L LEL+ N ++ +P +LF+ L+ L ++ +N+L + R
Sbjct: 133 RRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPR 187
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P LF +++ L+ I+ +K L+++P G+F +P L + L + + +P +F T
Sbjct: 161 MPSHLFDDLENLESIEFGSNK--LRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLT 218
Query: 62 NITNIVLTGHKKLTSLP 78
++ I L + S P
Sbjct: 219 SLQKIWLHTNPWDCSCP 235
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 41 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 100
TV S+A +P+ + T ++ ++T L +F +L +L+L N+L
Sbjct: 13 TVDCSGKSLASVPTGI----PTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 101 LPENLFESLKELYTLNLKNNQLENITR 127
LP +F+ L +L L+L +NQL++I R
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPR 95
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
SL +P+G+ +L L ++ I +L +F T +T + L + +LT LP+ +F
Sbjct: 20 SLASVPTGIPTTTQVL---YLYDNRITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFD 75
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
+L +L L N+LK +P F++L+ L + L NN +
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWD 115
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 14 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 68
Q+ ++ + L LP+G+F L L + L ++ + +P F N ++T+I L
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 41 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 100
TV S+A +P+ + T ++ ++T L +F +L +L+L N+L
Sbjct: 13 TVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 101 LPENLFESLKELYTLNLKNNQLENITR 127
LP +F+ L +L L+L +NQL++I R
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPR 95
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
SL +P+G+ +L L ++ I +L +F T +T + L + +LT LP+ +F
Sbjct: 20 SLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFD 75
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
+L +L L N+LK +P F++LK L + L NN +
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 68
+ Q+ ++ + L LP+G+F L L + L ++ + +P F N ++T+I L
Sbjct: 52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 41 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 100
TV S+A +P+ + T ++ ++T L +F +L +L+L N+L
Sbjct: 21 TVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 101 LPENLFESLKELYTLNLKNNQLENITR 127
LP +F+ L +L L+L +NQL++I R
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPR 103
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
SL +P+G+ +L L ++ I +L +F T +T + L + +LT LP+ +F
Sbjct: 28 SLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFD 83
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
+L +L L N+LK +P F++LK L + L NN +
Sbjct: 84 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 123
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 68
+ Q+ ++ + L LP+G+F L L + L ++ + +P F N ++T+I L
Sbjct: 60 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+LTSLP R +L +L L+ N+LK LP L +L L+L NNQL
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 67
+ L + +S+++ L+ LP L LP L + + + + LP + +
Sbjct: 74 GTLPVLGTLDLSHNQ--LQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 68 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
L G++ L +LP L KL KL L N+L LP L L+ L TL L+ N L I +
Sbjct: 131 LKGNE-LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 13 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 72
L V+ +S+++ L LP G L L + L + + LP L + + + L +
Sbjct: 102 LTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANN 158
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+LT LP+ L + L L LQ N L +P+ F S
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+LTSLP R +L +L L+ N+LK LP L +L L+L NNQL +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 67
+ L + +S+++ L+ LP L LP L + + + + LP + +
Sbjct: 74 GTLPVLGTLDLSHNQ--LQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 68 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
L G++ L +LP L KL KL L N+L LP L L+ L TL L+ N L I +
Sbjct: 131 LKGNE-LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
+ L V+ +S+++ L LP G L L + L + + LP L + + + L
Sbjct: 99 LPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL- 155
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ +LT LP+ L + L L LQ N L +P+ F S
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+LTSLP R +L +L L+ N+LK LP L +L L+L NNQL
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 67
+ L + +S+++ L+ LP L LP L + + + + LP + +
Sbjct: 74 GTLPVLGTLDLSHNQ--LQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 68 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
L G++ L +LP L KL KL L N+L LP L L+ L TL L+ N L I +
Sbjct: 131 LKGNE-LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
+ L V+ +S+++ L LP G L L + L + + LP L + + + L
Sbjct: 99 LPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL- 155
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ +LT LP+ L + L L LQ N L +P+ F S
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+LTSLP R +L +L L+ N+LK LP L +L L+L NNQL +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 67
+ L + +S+++ L+ LP L LP L + + + + LP + +
Sbjct: 74 GTLPVLGTLDLSHNQ--LQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 68 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
L G++ L +LP L KL KL L N+L LP L L+ L TL L+ N L I +
Sbjct: 131 LKGNE-LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
+ L V+ +S+++ L LP G L L + L + + LP L + + + L
Sbjct: 99 LPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL- 155
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ +LT LP+ L + L L LQ N L +P+ F S
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
L LP G+F +L L + LG + + LPS +F ++ + + + KLT LP + R
Sbjct: 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIER- 133
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
L L L +N+LK +P F+ L L L N + R
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 26 KELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 85
+P+G+ N +L L ++ I +L +F + N+ + L G +L +LP +F
Sbjct: 32 ASVPAGIPTNAQIL---YLHDNQITKLEPGVFDSLINLKELYL-GSNQLGALPVGVFDSL 87
Query: 86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+L L+L N+L LP +F+ L L L + N+L + R
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR 129
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 14 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 73
Q K+ + L E+P G+ +N LN L E++I + +D F + ++ ++ G
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHL-EVLQLGRNS 110
Query: 74 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ + F L LEL N L +P FE L +L L L+NN +E+I
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI 162
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
F LV+L L N L LP +LF L+ L L+L +N
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV------LTGHKKLTSLP 78
L+ + G F L L + LG +I ++P N+T +V ++G+ P
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMP--------NLTPLVGLEELEMSGNHFPEIRP 235
Query: 79 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ F L KL + +++ + N F+ L L LNL +N L ++
Sbjct: 236 GS-FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
+ L V+ +S+++ L LP G L L + L + + LP L + + + L
Sbjct: 99 LPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL- 155
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ LT LP+ L + L L LQ N L +P+ F S
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
+ L V+ +S+++ L LP G L L + L + + LP L + + + L
Sbjct: 99 LPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL- 155
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ LT LP+ L + L L LQ N L +P+ F S
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 18 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 77
++ + SL +P+G+ +L+ I + I +L +F + T +T + L +LT+L
Sbjct: 24 VNCQERSLASVPAGIPTTTQVLHLYI---NQITKLEPGVFDSLTQLTYLNL-AVNQLTAL 79
Query: 78 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
P +F KL L L N+LK +P +F++LK L + L NN
Sbjct: 80 PVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 41 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 100
TV E S+A +P+ + +T + ++ + ++T L +F +L L L N+L
Sbjct: 23 TVNCQERSLASVPAGIP-TTTQVLHLYI---NQITKLEPGVFDSLTQLTYLNLAVNQLTA 78
Query: 101 LPENLFESLKELYTLNLKNNQLENI 125
LP +F+ L +L L L NQL++I
Sbjct: 79 LPVGVFDKLTKLTHLALHINQLKSI 103
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 13 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 72
L V+ +S+++ L LP G L L + L + + LP L + + + L +
Sbjct: 102 LTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANN 158
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
LT LP+ L + L L LQ N L +P+ F S
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
+ L V+ +S+++ L LP G L L + L + + LP L + + + L
Sbjct: 99 LPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL- 155
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ LT LP+ L + L L LQ N L +P+ F S
Sbjct: 156 ANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 53 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 108
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L
Sbjct: 109 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 65
L + L V+ +S+++ L LP G L L + L + + LP L + +
Sbjct: 96 LGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 153
Query: 66 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ L + LT LP+ L + L L LQ N L +P+ F S
Sbjct: 154 LSL-ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 195
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNT-VILGESSIAELPSD-LFWNSTNITNIV 67
M + + + LKE+P ++PL T ++L ++ + + SD LF ++ +
Sbjct: 5 MCHCEGTTVDCTGRGLKEIPR----DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60
Query: 68 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L +LT + F + +L+L NK+K + +F L +L TLNL +NQ+ +
Sbjct: 61 LK-RNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 41 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLVKLELQRNKLK 99
TV + E+P D+ ++T + L +L + S LF LVKLEL+RN+L
Sbjct: 12 TVDCTGRGLKEIPRDIPLHTTEL----LLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 100 YLPENLFESLKELYTLNLKNNQLENIT 126
+ N FE + L L N+++ I+
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEIS 94
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
M Y ++ +++ + L +L + LP+L T+ L + + LP L + ++
Sbjct: 52 MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+LTSLP R +L +L L+ N+LK LP L +L L+L NN L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 65
L + L V+ +S+++ L LP G L L + L + + LP L + +
Sbjct: 95 LGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 66 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ L + LT LP+ L + L L LQ N L +P+ F S
Sbjct: 153 LSL-ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 63
+D FA +L+ ++++ ++ + + G F NL L T+ L + + +P +F +N+
Sbjct: 49 QDEFASFPHLEELELN--ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106
Query: 64 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
T + ++ K+ L +F+D L LE+ N L Y+ F L L L L+ L
Sbjct: 107 TKLDIS-ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165
Query: 124 NI 125
+I
Sbjct: 166 SI 167
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 22 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81
K+ +K L FA+ P L + L E+ ++ + F N N+ + L ++ L +P +
Sbjct: 41 KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGV 99
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
F L KL++ NK+ L + +F+ L L +L + +N L I+
Sbjct: 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 30 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89
+G+F LP L + + I ++ F ++ + I+LT + +L ++ +F+ + L
Sbjct: 50 TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLK 108
Query: 90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L L+ N++ + + F L + L+L +NQ+ +
Sbjct: 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
M P F +L+V++ S L+++P L + LL+ L + I E+ F N
Sbjct: 21 MGPVCPFRCQCHLRVVQCS--DLGLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNL 75
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL 112
N+ ++L + K++ + F KL +L L +N+LK LPE + ++L+EL
Sbjct: 76 KNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 126
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L+LQ NK+ + + F++LK L+TL L NN++ I+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
FA + L+ + +S K+ LKELP + L L + E+ I ++ +F N N +
Sbjct: 96 FAPLVKLERLYLS--KNQLKELPEKMPKTLQELR---VHENEITKVRKSVF-NGLNQMIV 149
Query: 67 VLTGHKKLTS--LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 113
V G L S + + F+ KKL + + + +P+ L SL EL+
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
M P F +L+V++ S L+++P L + LL+ L + I E+ F N
Sbjct: 21 MGPVCPFRCQCHLRVVQCS--DLGLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNL 75
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL 112
N+ ++L + K++ + F KL +L L +N+LK LPE + ++L+EL
Sbjct: 76 KNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 126
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L+LQ NK+ + + F++LK L+TL L NN++ I+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
FA + L+ + +S K+ LKELP + L L + E+ I ++ +F N N +
Sbjct: 96 FAPLVKLERLYLS--KNQLKELPEKMPKTLQELR---VHENEITKVRKSVF-NGLNQMIV 149
Query: 67 VLTGHKKLTS--LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 113
V G L S + + F+ KKL + + + +P+ L SL EL+
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 49 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ ++P DL TNIT + LT H +L LP+ F +L L++ N + L L +
Sbjct: 26 LTQVPDDL---PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 81
Query: 109 LKELYTLNLKNNQLENIT 126
L L LNL++N+L ++
Sbjct: 82 LPMLKVLNLQHNELSQLS 99
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 77 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+P +F+D +L ++L N L LP ++F + L +LNL+ N + ++ +
Sbjct: 561 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 611
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 25/112 (22%)
Query: 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 70
+Y Q+ + +++ +L L LP+L + L
Sbjct: 57 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL-------------------------Q 91
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
H +L+ L F C L +L L N ++ + N F K L TL+L +N L
Sbjct: 92 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 143
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 49 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ ++P DL TNIT + LT H +L LP+ F +L L++ N + L L +
Sbjct: 21 LTQVPDDL---PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 76
Query: 109 LKELYTLNLKNNQLENIT 126
L L LNL++N+L ++
Sbjct: 77 LPMLKVLNLQHNELSQLS 94
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 77 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+P +F+D +L ++L N L LP ++F + L +LNL+ N + ++ +
Sbjct: 556 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 606
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 25/112 (22%)
Query: 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 70
+Y Q+ + +++ +L L LP+L + L
Sbjct: 52 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL-------------------------Q 86
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
H +L+ L F C L +L L N ++ + N F K L TL+L +N L
Sbjct: 87 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 138
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 49 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ ++P DL TNIT + LT H +L LP+ F +L L++ N + L L +
Sbjct: 16 LTQVPDDL---PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71
Query: 109 LKELYTLNLKNNQLENIT 126
L L LNL++N+L ++
Sbjct: 72 LPMLKVLNLQHNELSQLS 89
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 77 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+P +F+D +L ++L N L LP ++F + L +LNL+ N + ++ +
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 25/112 (22%)
Query: 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 70
+Y Q+ + +++ +L L LP+L + L
Sbjct: 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL-------------------------Q 81
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
H +L+ L F C L +L L N ++ + N F K L TL+L +N L
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 72 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
K LTS+P+ + +LEL+ NKL+ LP +F+ L +L L+L +N L
Sbjct: 17 KGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 14 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 73
Q ++ + L E+P+ + N LN L E+SI + +D F + ++ I+
Sbjct: 15 QASRVICTRRELAEVPASIPVNTRYLN---LQENSIQVIRTDTFKHLRHL-EILQLSKNL 70
Query: 74 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ + F L LEL N+L +P FE L +L L L+NN +E+I
Sbjct: 71 VRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESI 122
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
H ++ ++ F D K L +L L N L LP +LF L L ++L +N
Sbjct: 211 HAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
F+ L KL L ++ + N F+ LK L LNL +N L
Sbjct: 198 FQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 14 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 73
Q ++ + L E+P+ + N LN L E+SI + +D F + ++ I+
Sbjct: 15 QASRVICTRRELAEVPASIPVNTRYLN---LQENSIQVIRTDTFKHLRHL-EILQLSKNL 70
Query: 74 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ + F L LEL N+L +P FE L +L L L+NN +E+I
Sbjct: 71 VRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESI 122
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
H ++ ++ F D K L +L L N L LP +LF L L ++L +N
Sbjct: 211 HAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 48/169 (28%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF------- 57
D F +++L+++++S K+ ++++ G F LP LNT+ L ++ + +P+ F
Sbjct: 53 DTFKHLRHLEILQLS--KNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLR 110
Query: 58 --WNSTN---------------ITNIVLTGHKKLTSLPSTLFRD-----------CK--- 86
W N + + L K+L + F C
Sbjct: 111 ELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD 170
Query: 87 --------KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+L +LEL N+L + F+ L L L L + Q+ I R
Sbjct: 171 IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER 219
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 14 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 73
Q K+ + +L+E+P G+ N LLN L E+ I + + F + ++ I+
Sbjct: 44 QFSKVICVRKNLREVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHL-EILQLSRNH 99
Query: 74 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ ++ F L LEL N+L +P F L +L L L+NN +E+I
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
F + + LV++ L N L LP +LF L L ++L +N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 74 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
L+++ F+ L KL + +++++ + N F++L+ L +NL +N L
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
F +L+V++ S LK +P + + LL+ L + I+EL D F ++ +
Sbjct: 29 FGCHCHLRVVQCS--DLGLKAVPKEISPDTTLLD---LQNNDISELRKDDFKGLQHLYAL 83
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL 112
VL + K++ + F +KL KL + +N L +P NL SL EL
Sbjct: 84 VLV-NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL 128
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 15 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
++++ H + ++++P G+F+ L +N + +G + + + N + KL
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184
Query: 75 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
T +P L + L +L L NK++ + +LY L L +NQ+ I
Sbjct: 185 TGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L+LQ N + L ++ F+ L+ LY L L NN++ I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 44 LGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE 103
L ++ I E+ + F N T + + L+ + L LP+ +F V L++ R ++ LP
Sbjct: 161 LNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Query: 104 NLFESLKELY---TLNLK 118
E+LK+L T NLK
Sbjct: 220 YGLENLKKLRARSTYNLK 237
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 46 ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK-LKYLPEN 104
ES + E+PSDL N+ + VLT KL + F L K+E+ +N L+ + +
Sbjct: 18 ESKVTEIPSDLPRNAIELR-FVLT---KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73
Query: 105 LFESLKELYTLNLK 118
+F +L +L+ + ++
Sbjct: 74 VFSNLPKLHEIRIE 87
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 49 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ +P DL +NIT + LT H +L LP T F +L L+ N + L L +
Sbjct: 16 LTHIPDDL---PSNITVLNLT-HNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQI 71
Query: 109 LKELYTLNLKNNQLENIT 126
L L LNL++N+L I+
Sbjct: 72 LPLLKVLNLQHNELSQIS 89
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS-TNITN 65
F + + ++ ++ K+ + ++ +G F+ L L + LG + I + S W NI
Sbjct: 375 FVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFE 434
Query: 66 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQLE 123
I L+ +K L L ++ F L +L L+R LK + + F L+ L L+L NN +
Sbjct: 435 IYLSYNKYL-QLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIA 493
Query: 124 NI 125
NI
Sbjct: 494 NI 495
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 70
+Y Q+ + +S+ +L L LPLL + L + ++++ F TN+T + L
Sbjct: 47 RYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMS 106
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKL 98
+ + + S F++ K L+KL+L N L
Sbjct: 107 N-SIHKIKSNPFKNQKNLIKLDLSHNGL 133
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 44 LGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE 103
L ++ I E+ + F N T + + L+ + L LP+ +F V L++ R ++ LP
Sbjct: 161 LNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Query: 104 NLFESLKELY---TLNLK 118
E+LK+L T NLK
Sbjct: 220 YGLENLKKLRARSTYNLK 237
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 46 ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK-LKYLPEN 104
ES + E+PSDL N+ + VLT KL + F L K+E+ +N L+ + +
Sbjct: 18 ESKVTEIPSDLPRNAIELR-FVLT---KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73
Query: 105 LFESLKELYTLNLK 118
+F +L +L+ + ++
Sbjct: 74 VFSNLPKLHEIRIE 87
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 25 LKELPSGLFANLPLLNTVILG-ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L+ +PS F+NLP ++ + + + ++ +L S F+N + +T+I + + LT + +
Sbjct: 43 LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102
Query: 84 DCKKLVKLELQRNKLKYLPE 103
+ L L + LK P+
Sbjct: 103 ELPLLKFLGIFNTGLKMFPD 122
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 37 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 96
P T+ L E+ + +PS F N NI+ I ++ L L S F + K+ +E++
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 97 K-LKYLPENLFESLKELYTLNLKNNQLE 123
+ L Y+ + + L L L + N L+
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLK 118
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL--TGHKKLTSLPSTLFRDCKKLVK 90
F NLP L + LG S I L D F ++ + L G L FR+ K L +
Sbjct: 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV-LKDGYFRNLKALTR 127
Query: 91 LELQRNKLK--YLPENLFESLKELYTLNLKNNQL 122
L+L +N+++ YL + F L L +++ +NQ+
Sbjct: 128 LDLSKNQIRSLYLHPS-FGKLNSLKSIDFSSNQI 160
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 37 PLLNTVILGESSI-----AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91
P L + LGE+ + EL D+F +++ ++ H L SLP +F L L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHL-QVLYLNHNYLNSLPPGVFSHLTALRGL 509
Query: 92 ELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
L N+L L N + E+ L++ NQL
Sbjct: 510 SLNSNRLTVLSHNDLPANLEI--LDISRNQL 538
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
H + SL S +F K L L L NK+ + + F L L LNL N L
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 21/105 (20%)
Query: 24 SLKELPSGLFANLPLLNTVILGE--SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81
SL LPSGL ++ G +S+ LPS+L ++++G++ LTSLP
Sbjct: 215 SLPALPSGLK------ELIVSGNRLTSLPVLPSEL-------KELMVSGNR-LTSLPML- 259
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L+ L + RN+L LPE+L L T+NL+ N L T
Sbjct: 260 ---PSGLLSLSVYRNQLTRLPESLIH-LSSETTVNLEGNPLSERT 300
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 26/116 (22%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFA------------NLPLLNTVILGESSI--- 49
+ FA + L+ + + DS + L +GLF+ NL ++ E +
Sbjct: 156 EAFATCESLEYVSLP---DSXETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLEN 212
Query: 50 AELPSDLFW------NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 99
E P+ L++ + T + NI++ T L ++F C L + +Q NKL+
Sbjct: 213 XEFPNSLYYLGDFALSKTGVKNIIIP--DSFTELGKSVFYGCTDLESISIQNNKLR 266
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+F + + L L+L + +L+ L F SL L LN+ +NQL+++
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
>pdb|3QNU|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Hexagonal Form
pdb|3QOF|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|B Chain B, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|C Chain C, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|D Chain D, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
Length = 459
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 65 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
N + T H +L LFR KK+ E R +YL + L + ELY +K+N +N
Sbjct: 397 NDLQTKHLQLKEESVKLFRGVKKMGGEEFSR---RYL-QQLESEIDELYIQYIKHNDSKN 452
Query: 125 I 125
I
Sbjct: 453 I 453
>pdb|4IDN|A Chain A, Human Atlastin-1 1-446, C-his6, Gppnhp
pdb|4IDN|B Chain B, Human Atlastin-1 1-446, C-his6, Gppnhp
pdb|4IDO|A Chain A, Human Atlastin-1 1-446, C-his6, Gdpalf4-
pdb|4IDO|B Chain B, Human Atlastin-1 1-446, C-his6, Gdpalf4-
Length = 457
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 65 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
N + T H +L LFR KK+ E R +YL + L + ELY +K+N +N
Sbjct: 385 NDLQTKHLQLKEESVKLFRGVKKMGGEEFSR---RYL-QQLESEIDELYIQYIKHNDSKN 440
Query: 125 I 125
I
Sbjct: 441 I 441
>pdb|3Q5E|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|C Chain C, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|E Chain E, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|G Chain G, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
Length = 447
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 65 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
N + T H +L LFR KK+ E R +YL + L + ELY +K+N +N
Sbjct: 385 NDLQTKHLQLKEESVKLFRGVKKMGGEEFSR---RYL-QQLESEIDELYIQYIKHNDSKN 440
Query: 125 I 125
I
Sbjct: 441 I 441
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
K+ +L ++F L +L L +N++ + +N F L L L L NQL+++
Sbjct: 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSV 338
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 39 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 98
L++++L + + + S+ F N+ + L+ L +L LF D + L L L N +
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQALEVLLLYNNHI 124
Query: 99 KYLPENLFESLKELYTLNLKNNQL 122
+ N FE + +L L L NQ+
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|2JH8|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-capping Production-line
pdb|2JH9|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHA|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHC|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHP|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
Length = 644
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 76 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL 109
S+ + RD +K+V+L R++ ++L + LFE L
Sbjct: 357 SVTKVVSRDVRKMVELYHGRDRGRFLKKRLFEHL 390
>pdb|1VK3|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
Synthase Ii (Tm1246) From Thermotoga Maritima At 2.15 A
Resolution
Length = 615
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 37
D+ AE+ V ++ Y D + E+P L AN P
Sbjct: 321 DVVAEVIEEPVYRVXYRNDLVXEVPVQLLANAP 353
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
K+ +L ++F L +L L +N++ + +N F L L LNL N L +I
Sbjct: 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR- 83
L+ L S F + P L + L I + + + ++++ ++LTG+ + SL F
Sbjct: 42 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 100
Query: 84 --DCKKLVKLELQRNKLKYLPENLFESLKEL 112
+KLV LE L+ P ++LKEL
Sbjct: 101 LSSLQKLVALETNLASLENFPIGHLKTLKEL 131
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
+ ++T +P+ +++ L NKLKY+P N+F++
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDA 398
>pdb|3Q5D|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 1
Length = 447
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 65 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
N + T H +L LFR KK E R +YL + L + ELY +K+N +N
Sbjct: 385 NDLQTKHLQLKEESVKLFRGVKKXGGEEFSR---RYL-QQLESEIDELYIQYIKHNDSKN 440
Query: 125 I 125
I
Sbjct: 441 I 441
>pdb|2HS0|A Chain A, T. Maritima Purl Complexed With Atp
pdb|2HS3|A Chain A, T. Maritima Purl Complexed With Fgar
pdb|2HS4|A Chain A, T. Maritima Purl Complexed With Fgar And Amppcp
Length = 603
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 37
D+ AE+ V ++ Y D + E+P L AN P
Sbjct: 309 DVVAEVIEEPVYRVMYRNDLVMEVPVQLLANAP 341
>pdb|3D54|A Chain A, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|E Chain E, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|I Chain I, Stucture Of Purlqs From Thermotoga Maritima
Length = 629
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 37
D+ AE+ V ++ Y D + E+P L AN P
Sbjct: 335 DVVAEVIEEPVYRVMYRNDLVMEVPVQLLANAP 367
>pdb|2HRU|A Chain A, T. Maritima Purl Complexed With Adp
pdb|2HRY|A Chain A, T. Maritima Purl Complexed With Amppcp
Length = 603
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 37
D+ AE+ V ++ Y D + E+P L AN P
Sbjct: 309 DVVAEVIEEPVYRVMYRNDLVMEVPVQLLANAP 341
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
K+T + R C L L L+ +++ + + F SL L L+L +N L +++
Sbjct: 37 KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
K+T + R C L L L+ +++ + + F SL L L+L +N L +++
Sbjct: 63 KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,472,809
Number of Sequences: 62578
Number of extensions: 124103
Number of successful extensions: 638
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 230
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)