Query psy8031
Match_columns 127
No_of_seqs 116 out of 1410
Neff 11.2
Searched_HMMs 46136
Date Fri Aug 16 16:41:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194|consensus 99.7 9.6E-18 2.1E-22 114.0 1.7 124 1-127 211-334 (873)
2 KOG4194|consensus 99.6 1.5E-17 3.2E-22 113.1 -0.1 118 2-122 260-377 (873)
3 KOG4237|consensus 99.6 9.5E-17 2.1E-21 104.6 -1.2 114 11-126 67-180 (498)
4 PF14580 LRR_9: Leucine-rich r 99.5 4.8E-14 1E-18 84.3 5.9 113 8-126 16-129 (175)
5 KOG4237|consensus 99.5 3E-16 6.5E-21 102.3 -4.4 118 1-121 81-199 (498)
6 KOG0617|consensus 99.5 1E-15 2.2E-20 90.4 -2.3 117 2-126 48-166 (264)
7 PF13855 LRR_8: Leucine rich r 99.4 4.1E-13 8.8E-18 67.3 4.8 59 12-73 2-60 (61)
8 KOG0617|consensus 99.4 5.7E-15 1.2E-19 87.3 -2.5 118 2-127 71-190 (264)
9 PF13855 LRR_8: Leucine rich r 99.4 6.8E-13 1.5E-17 66.5 5.1 59 38-97 2-60 (61)
10 PLN00113 leucine-rich repeat r 99.4 2.2E-12 4.8E-17 94.7 9.2 44 6-50 88-131 (968)
11 PLN00113 leucine-rich repeat r 99.4 3.1E-12 6.6E-17 94.0 8.4 112 7-122 160-272 (968)
12 KOG0472|consensus 99.3 5.4E-13 1.2E-17 87.8 1.8 117 3-126 427-543 (565)
13 KOG0472|consensus 99.3 5.3E-14 1.2E-18 92.4 -3.3 114 2-124 198-311 (565)
14 KOG0444|consensus 99.3 4.8E-13 1E-17 92.7 1.0 111 8-122 75-185 (1255)
15 KOG0444|consensus 99.3 5.7E-13 1.2E-17 92.3 0.6 118 2-126 95-238 (1255)
16 PF14580 LRR_9: Leucine-rich r 99.3 1.7E-11 3.7E-16 73.4 5.9 104 9-117 40-147 (175)
17 PF13306 LRR_5: Leucine rich r 99.2 7.4E-11 1.6E-15 67.5 7.4 111 1-119 2-112 (129)
18 PRK15370 E3 ubiquitin-protein 99.1 7.1E-10 1.5E-14 79.5 8.0 100 12-126 200-299 (754)
19 KOG0618|consensus 99.0 4.4E-11 9.6E-16 85.4 0.9 110 6-121 378-487 (1081)
20 PF13306 LRR_5: Leucine rich r 99.0 2.3E-09 5E-14 61.2 7.1 104 2-113 26-129 (129)
21 PRK15370 E3 ubiquitin-protein 99.0 6.8E-10 1.5E-14 79.6 5.6 88 2-104 214-301 (754)
22 PLN03150 hypothetical protein; 99.0 3.1E-09 6.6E-14 75.3 8.5 106 12-121 419-526 (623)
23 KOG0532|consensus 99.0 4.3E-11 9.4E-16 81.8 -1.4 108 8-124 118-248 (722)
24 PRK15387 E3 ubiquitin-protein 99.0 3E-09 6.5E-14 76.4 7.4 81 12-103 223-319 (788)
25 KOG0618|consensus 98.9 2.6E-10 5.7E-15 81.6 0.1 114 1-120 397-510 (1081)
26 KOG1259|consensus 98.9 3.7E-10 8.1E-15 72.5 0.2 108 13-126 286-415 (490)
27 KOG0532|consensus 98.9 7.1E-10 1.5E-14 76.1 0.9 89 10-105 165-253 (722)
28 KOG1259|consensus 98.8 4.7E-10 1E-14 72.0 -0.0 91 8-103 304-416 (490)
29 PRK15387 E3 ubiquitin-protein 98.8 1.3E-08 2.9E-13 73.2 5.7 100 12-124 343-459 (788)
30 PLN03210 Resistant to P. syrin 98.8 7.2E-08 1.6E-12 72.6 8.8 107 10-125 777-885 (1153)
31 PLN03150 hypothetical protein; 98.7 6.2E-08 1.3E-12 68.8 7.1 83 39-123 420-503 (623)
32 PLN03210 Resistant to P. syrin 98.7 1.8E-07 3.9E-12 70.6 9.8 86 36-126 610-698 (1153)
33 KOG4579|consensus 98.7 1E-09 2.2E-14 62.9 -1.5 107 15-126 31-139 (177)
34 cd00116 LRR_RI Leucine-rich re 98.7 3.7E-08 8.1E-13 64.2 4.4 38 86-123 193-234 (319)
35 KOG1644|consensus 98.6 1.2E-07 2.6E-12 57.6 6.0 107 12-124 20-127 (233)
36 PF12799 LRR_4: Leucine Rich r 98.6 3.9E-08 8.5E-13 45.7 3.0 39 87-126 2-40 (44)
37 PF12799 LRR_4: Leucine Rich r 98.6 1.5E-07 3.2E-12 43.8 3.8 39 12-53 2-40 (44)
38 KOG1644|consensus 98.5 2.4E-07 5.2E-12 56.4 4.8 104 11-119 42-149 (233)
39 KOG4579|consensus 98.5 1.3E-08 2.8E-13 58.4 -0.7 92 10-106 52-143 (177)
40 COG4886 Leucine-rich repeat (L 98.4 1.2E-07 2.5E-12 63.9 2.4 44 8-54 160-203 (394)
41 KOG1859|consensus 98.4 5.1E-09 1.1E-13 74.0 -4.4 100 16-124 169-268 (1096)
42 COG4886 Leucine-rich repeat (L 98.4 2.3E-07 5E-12 62.5 2.7 103 11-120 116-219 (394)
43 KOG1859|consensus 98.4 6.4E-09 1.4E-13 73.6 -4.8 110 6-123 182-292 (1096)
44 KOG0531|consensus 98.4 1.4E-07 3E-12 64.0 1.5 110 8-125 92-201 (414)
45 cd00116 LRR_RI Leucine-rich re 98.4 8.6E-07 1.9E-11 57.9 5.0 114 6-123 76-206 (319)
46 KOG4658|consensus 98.3 4.1E-07 8.8E-12 66.8 3.3 89 3-95 563-651 (889)
47 KOG0531|consensus 98.3 1.9E-07 4.1E-12 63.4 0.6 108 10-126 71-178 (414)
48 KOG4658|consensus 98.2 2.1E-06 4.5E-11 63.2 3.7 107 10-119 544-651 (889)
49 KOG3207|consensus 98.1 4E-07 8.8E-12 61.1 -0.2 114 11-126 197-317 (505)
50 KOG1909|consensus 98.1 3.3E-06 7.1E-11 55.3 3.2 117 6-123 87-226 (382)
51 KOG3207|consensus 98.1 9.5E-07 2.1E-11 59.4 0.5 89 36-125 196-286 (505)
52 KOG1909|consensus 97.9 7.4E-06 1.6E-10 53.7 2.1 116 5-122 179-310 (382)
53 KOG3665|consensus 97.7 6.6E-05 1.4E-09 54.3 4.1 110 9-123 146-263 (699)
54 KOG3665|consensus 97.6 4E-05 8.6E-10 55.3 2.2 108 11-121 122-231 (699)
55 PRK15386 type III secretion pr 97.3 0.0018 3.8E-08 44.3 7.3 60 9-78 50-111 (426)
56 COG5238 RNA1 Ran GTPase-activa 97.1 0.0023 5E-08 41.5 5.8 117 6-123 87-227 (388)
57 PF00560 LRR_1: Leucine Rich R 97.1 0.00035 7.6E-09 27.2 1.3 10 13-22 2-11 (22)
58 PF00560 LRR_1: Leucine Rich R 97.0 0.00042 9.1E-09 27.0 1.2 21 38-59 1-21 (22)
59 KOG2982|consensus 97.0 0.00016 3.6E-09 47.1 -0.2 59 11-69 71-129 (418)
60 PF13504 LRR_7: Leucine rich r 96.9 0.00058 1.3E-08 24.9 1.2 16 111-126 2-17 (17)
61 smart00370 LRR Leucine-rich re 96.7 0.0017 3.7E-08 26.2 2.0 20 38-57 3-22 (26)
62 smart00369 LRR_TYP Leucine-ric 96.7 0.0017 3.7E-08 26.2 2.0 20 38-57 3-22 (26)
63 KOG2123|consensus 96.6 9.9E-05 2.1E-09 47.6 -3.1 82 10-98 18-100 (388)
64 KOG2123|consensus 96.6 5.5E-05 1.2E-09 48.7 -4.3 58 60-120 40-98 (388)
65 KOG2739|consensus 96.6 0.0017 3.7E-08 41.3 2.2 13 35-47 63-75 (260)
66 smart00369 LRR_TYP Leucine-ric 96.6 0.0017 3.8E-08 26.2 1.5 23 10-34 1-23 (26)
67 smart00370 LRR Leucine-rich re 96.6 0.0017 3.8E-08 26.2 1.5 23 10-34 1-23 (26)
68 KOG2982|consensus 96.6 0.001 2.2E-08 43.5 1.1 87 35-123 69-159 (418)
69 KOG2739|consensus 96.3 0.0051 1.1E-07 39.2 2.9 87 34-124 40-130 (260)
70 PRK15386 type III secretion pr 96.1 0.024 5.3E-07 38.9 5.8 62 35-103 50-112 (426)
71 KOG2120|consensus 96.0 0.00045 9.8E-09 45.1 -2.7 110 7-120 206-323 (419)
72 KOG2120|consensus 95.5 0.00027 5.9E-09 46.1 -5.0 86 12-98 186-272 (419)
73 smart00364 LRR_BAC Leucine-ric 94.5 0.029 6.3E-07 22.7 1.3 17 111-127 3-19 (26)
74 smart00365 LRR_SD22 Leucine-ri 93.6 0.067 1.5E-06 21.7 1.6 16 110-125 2-17 (26)
75 COG5238 RNA1 Ran GTPase-activa 93.6 0.18 3.8E-06 33.2 4.2 115 6-123 115-255 (388)
76 KOG0473|consensus 92.4 0.0013 2.8E-08 41.7 -6.4 83 36-122 41-123 (326)
77 KOG0473|consensus 92.4 0.0017 3.7E-08 41.1 -5.9 76 48-126 29-104 (326)
78 PF13516 LRR_6: Leucine Rich r 91.6 0.11 2.4E-06 20.3 0.9 14 110-123 2-15 (24)
79 KOG3864|consensus 90.5 0.067 1.5E-06 33.2 -0.3 80 38-117 102-183 (221)
80 smart00368 LRR_RI Leucine rich 87.7 0.47 1E-05 19.4 1.4 14 110-123 2-15 (28)
81 KOG3763|consensus 79.3 1.5 3.3E-05 31.5 1.9 35 37-72 218-254 (585)
82 KOG3864|consensus 77.2 1 2.2E-05 28.3 0.5 62 62-124 102-166 (221)
83 TIGR00864 PCC polycystin catio 72.8 3.3 7.1E-05 35.6 2.4 32 17-50 1-32 (2740)
84 smart00367 LRR_CC Leucine-rich 72.4 2.2 4.8E-05 16.8 0.8 12 11-22 2-13 (26)
85 TIGR00864 PCC polycystin catio 71.7 3 6.6E-05 35.8 2.0 24 1-24 9-32 (2740)
86 TIGR02167 Liste_lipo_26 bacter 65.7 2.6 5.6E-05 16.9 0.3 17 7-23 2-18 (26)
87 PF03382 DUF285: Mycoplasma pr 65.4 0.68 1.5E-05 26.2 -2.0 78 5-88 5-88 (120)
88 KOG1947|consensus 59.2 11 0.00025 26.1 2.8 13 34-46 211-223 (482)
89 KOG3763|consensus 56.4 9.8 0.00021 27.7 2.0 62 60-123 217-283 (585)
90 smart00446 LRRcap occurring C- 37.8 17 0.00038 14.6 0.6 13 6-18 8-20 (26)
91 PF07725 LRR_3: Leucine Rich R 27.3 49 0.0011 12.4 1.1 11 113-123 3-13 (20)
92 KOG4341|consensus 23.1 41 0.0009 24.0 0.8 107 8-117 317-433 (483)
No 1
>KOG4194|consensus
Probab=99.68 E-value=9.6e-18 Score=113.98 Aligned_cols=124 Identities=17% Similarity=0.329 Sum_probs=86.0
Q ss_pred CCchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80 (127)
Q Consensus 1 ~i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~ 80 (127)
++|..+|..+++|+.|++-.|.+. .+.-..|.++++++.+.+..|.+..+.+++|.++..++.+++. .|+++.+..+
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~ir--ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~-~N~l~~vn~g 287 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIR--IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE-TNRLQAVNEG 287 (873)
T ss_pred ccCHHHhhhcchhhhhhcccccee--eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc-cchhhhhhcc
Confidence 356666776777777777666654 4444456666666666667777777776677777777777777 7777777665
Q ss_pred hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccCC
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 127 (127)
+..+++.|++++++.|.+..+..+.|.-+++|.+|+++.|.|+.+++
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 55667777777777777776666656677788888888888777663
No 2
>KOG4194|consensus
Probab=99.65 E-value=1.5e-17 Score=113.11 Aligned_cols=118 Identities=21% Similarity=0.348 Sum_probs=60.2
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+.+|+|..|.+++.|+++.|++. .+..+..-++..|+.|+++.|++..+..+....++.|++|+++ .|++++++++.
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~--~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs-~N~i~~l~~~s 336 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQ--AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS-SNRITRLDEGS 336 (873)
T ss_pred ccCcceeeecccceeecccchhh--hhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc-ccccccCChhH
Confidence 34555666666666666666544 4544444455555555555555555444433444555555555 55555555544
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i 122 (127)
|..+..|+.++++.|.++++.+.+|..+++|+.|++++|.+
T Consensus 337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 44444455555555554444444444444444444444433
No 3
>KOG4237|consensus
Probab=99.59 E-value=9.5e-17 Score=104.59 Aligned_cols=114 Identities=25% Similarity=0.417 Sum_probs=96.8
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~ 90 (127)
+....+.+..|+|. .+|+++|..+++|+++++++|+++.|.+.+|.++.++..+.+.++|+|+.++..+|.++.+++.
T Consensus 67 ~~tveirLdqN~I~--~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS--SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcc--cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 34677889999887 8999999999999999999999999988889998887776666258999999999998888888
Q ss_pred EEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+.+.-|.+.-+...+|.+++++..|.+..|.+..++
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~ 180 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC 180 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc
Confidence 888888888888888888888888888888877664
No 4
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.51 E-value=4.8e-14 Score=84.31 Aligned_cols=113 Identities=22% Similarity=0.274 Sum_probs=46.0
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCC
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 87 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~ 87 (127)
.++.++++|++.+|+++ .+.. .-..+.+++.+++++|.++.+.. +..++.|+.|+++ +|.++.+.......+++
T Consensus 16 ~n~~~~~~L~L~~n~I~--~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~-~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS--TIEN-LGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLS-NNRISSISEGLDKNLPN 89 (175)
T ss_dssp ----------------------S---TT-TT--EEE-TTS--S--TT------TT--EEE---SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccc--cccc-hhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccC-CCCCCccccchHHhCCc
Confidence 34567899999999987 6653 32357889999999999998874 6778999999999 99999987654345789
Q ss_pred CcEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031 88 LVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 88 l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
|+.+++++|.+.++.+ ..++.+++|+.+++.+|+++.-+
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 9999999999987655 34567899999999999998643
No 5
>KOG4237|consensus
Probab=99.50 E-value=3e-16 Score=102.30 Aligned_cols=118 Identities=23% Similarity=0.376 Sum_probs=107.4
Q ss_pred CCchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecC-CcccccChhhhcCCCCCcEEEecCCCCCeeecc
Q psy8031 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 79 (127)
Q Consensus 1 ~i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~ 79 (127)
.||+++|..+++|+.|++++|+|+ .|.+.+|.+++.+..+.+-+ |++++++.++|.++..++.|.+. -+++.-+..
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is--~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN-an~i~Cir~ 157 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNIS--FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN-ANHINCIRQ 157 (498)
T ss_pred cCChhhccchhhhceecccccchh--hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC-hhhhcchhH
Confidence 489999999999999999999988 99999999999987777665 99999999999999999999999 999999999
Q ss_pred hhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCc
Q psy8031 80 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121 (127)
Q Consensus 80 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~ 121 (127)
.+|..++++..+.+..|.+..++...|.++..++.+.+..|+
T Consensus 158 ~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 999999999999999999998888777888888888877775
No 6
>KOG0617|consensus
Probab=99.49 E-value=1e-15 Score=90.41 Aligned_cols=117 Identities=31% Similarity=0.497 Sum_probs=67.7
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCe--eecc
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT--SLPS 79 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~--~~~~ 79 (127)
+|+.+ +.+.+|+.|.+++|++. ++|..+ +.++.++.+.+..|++..+|.+ |+.++.|+.+++. .|++. .+|.
T Consensus 48 vppni-a~l~nlevln~~nnqie--~lp~~i-ssl~klr~lnvgmnrl~~lprg-fgs~p~levldlt-ynnl~e~~lpg 121 (264)
T KOG0617|consen 48 VPPNI-AELKNLEVLNLSNNQIE--ELPTSI-SSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLT-YNNLNENSLPG 121 (264)
T ss_pred cCCcH-HHhhhhhhhhcccchhh--hcChhh-hhchhhhheecchhhhhcCccc-cCCCchhhhhhcc-ccccccccCCc
Confidence 44554 45666677777777665 666655 5666677777776666666654 6666777777776 55543 2333
Q ss_pred hhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 80 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 80 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
. |-.++.++.++++.|.+..+|.++ +.+++|+.+.+..|.+-++|
T Consensus 122 n-ff~m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 122 N-FFYMTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred c-hhHHHHHHHHHhcCCCcccCChhh-hhhcceeEEeeccCchhhCc
Confidence 3 223444555555555555555554 45555555555555544443
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.42 E-value=4.1e-13 Score=67.28 Aligned_cols=59 Identities=31% Similarity=0.532 Sum_probs=34.4
Q ss_pred cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCC
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 73 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~ 73 (127)
+|+.|++++|++. .++++.|.+++.|+++++++|.++.+++..|.++++|+.++++ +|+
T Consensus 2 ~L~~L~l~~n~l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~-~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS-NNN 60 (61)
T ss_dssp TESEEEETSSTES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET-SSS
T ss_pred cCcEEECCCCCCC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc-CCc
Confidence 4555666666544 5565555666666666666666665555555555566666555 543
No 8
>KOG0617|consensus
Probab=99.42 E-value=5.7e-15 Score=87.25 Aligned_cols=118 Identities=25% Similarity=0.498 Sum_probs=102.6
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc--cChhhhcCCCCCcEEEecCCCCCeeecc
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE--LPSDLFWNSTNITNIVLTGHKKLTSLPS 79 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~~n~~~~~~~ 79 (127)
+|..+ +.+++|+.|.+..|.+. .+|.+ |+.++.++.+|++.|++.+ +|.. |-.+..|+.+.++ +|.++.+|+
T Consensus 71 lp~~i-ssl~klr~lnvgmnrl~--~lprg-fgs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~-dndfe~lp~ 144 (264)
T KOG0617|consen 71 LPTSI-SSLPKLRILNVGMNRLN--ILPRG-FGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLG-DNDFEILPP 144 (264)
T ss_pred cChhh-hhchhhhheecchhhhh--cCccc-cCCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhc-CCCcccCCh
Confidence 45555 77999999999999976 77776 4999999999999999884 4544 5568899999999 999999999
Q ss_pred hhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccCC
Q psy8031 80 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127 (127)
Q Consensus 80 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 127 (127)
.+ +.+++++.+.++.|.+-++|..+ +.++.|+++++.+|.++-+|+
T Consensus 145 dv-g~lt~lqil~lrdndll~lpkei-g~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 145 DV-GKLTNLQILSLRDNDLLSLPKEI-GDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred hh-hhhcceeEEeeccCchhhCcHHH-HHHHHHHHHhcccceeeecCh
Confidence 87 77899999999999999999986 899999999999999988773
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.41 E-value=6.8e-13 Score=66.45 Aligned_cols=59 Identities=31% Similarity=0.512 Sum_probs=39.8
Q ss_pred CCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCcc
Q psy8031 38 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 97 (127)
Q Consensus 38 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~ 97 (127)
+++++++++|+++.+++..|.++++|+.++++ +|.+..+++..|.++++|+.+++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46666676666666666666666666777776 666666666666666666666666664
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.40 E-value=2.2e-12 Score=94.75 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=22.0
Q ss_pred hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCccc
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 50 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~ 50 (127)
.|..++.|+.|++++|++. +.+|.+.|..+.+|+++++++|.++
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~ 131 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFT 131 (968)
T ss_pred HHhCCCCCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCccc
Confidence 3445555555555555542 3455544444455555555444443
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.37 E-value=3.1e-12 Score=94.01 Aligned_cols=112 Identities=21% Similarity=0.233 Sum_probs=51.7
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
+.++++|+.|++++|.+. +.+| ..+..+++|++|++++|.+....+..+..+.+|+.++++ .|.+....+..+..++
T Consensus 160 ~~~l~~L~~L~L~~n~l~-~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLV-GKIP-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG-YNNLSGEIPYEIGGLT 236 (968)
T ss_pred HhcCCCCCEEECccCccc-ccCC-hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc-CCccCCcCChhHhcCC
Confidence 345555555555555542 1222 233455555555555555543322234445555555555 5444432222234445
Q ss_pred CCcEEEecCcccc-ccChhhhcCCccccEEeccCCcc
Q psy8031 87 KLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQL 122 (127)
Q Consensus 87 ~l~~l~l~~n~~~-~~~~~~~~~~~~l~~l~l~~n~i 122 (127)
+|+.+++++|.+. .+|.. ++++++|+.|++++|.+
T Consensus 237 ~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL 272 (968)
T ss_pred CCCEEECcCceeccccChh-HhCCCCCCEEECcCCee
Confidence 5555555555443 22222 34444455555544443
No 12
>KOG0472|consensus
Probab=99.32 E-value=5.4e-13 Score=87.81 Aligned_cols=117 Identities=21% Similarity=0.360 Sum_probs=96.7
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
++.....++++..|++++|-++ ++|.+. +.+..++.++++.|+|..+|...+ -...++.+-.+ +|++..++++..
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln--~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~~y-~lq~lEtllas-~nqi~~vd~~~l 501 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLN--DLPEEM-GSLVRLQTLNLSFNRFRMLPECLY-ELQTLETLLAS-NNQIGSVDPSGL 501 (565)
T ss_pred chHHHHhhhcceeeecccchhh--hcchhh-hhhhhhheecccccccccchHHHh-hHHHHHHHHhc-cccccccChHHh
Confidence 3445567889999999999877 999887 557779999999999998887532 23445566666 789999988766
Q ss_pred ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.++.++..+++.+|.+..+|+.. ++|++++++.+.+|+++ .|
T Consensus 502 ~nm~nL~tLDL~nNdlq~IPp~L-gnmtnL~hLeL~gNpfr-~P 543 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQIPPIL-GNMTNLRHLELDGNPFR-QP 543 (565)
T ss_pred hhhhhcceeccCCCchhhCChhh-ccccceeEEEecCCccC-CC
Confidence 78899999999999999999985 99999999999999998 44
No 13
>KOG0472|consensus
Probab=99.31 E-value=5.3e-14 Score=92.43 Aligned_cols=114 Identities=27% Similarity=0.451 Sum_probs=61.1
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+|+.+ +++.+|..|++.+|++. .+|. |.++..+.+++++.|++.-+|....++++++..+|+. +|.+..+|.+.
T Consensus 198 lP~~l-g~l~~L~~LyL~~Nki~--~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR-dNklke~Pde~ 271 (565)
T KOG0472|consen 198 LPPEL-GGLESLELLYLRRNKIR--FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR-DNKLKEVPDEI 271 (565)
T ss_pred CChhh-cchhhhHHHHhhhcccc--cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc-ccccccCchHH
Confidence 34444 44555555555555543 4442 3555555555555555555555544555555555555 55555555554
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
+-+.++.++++++|.++.+|... +++ .|+.+.+.+|+++.
T Consensus 272 -clLrsL~rLDlSNN~is~Lp~sL-gnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 272 -CLLRSLERLDLSNNDISSLPYSL-GNL-HLKFLALEGNPLRT 311 (565)
T ss_pred -HHhhhhhhhcccCCccccCCccc-ccc-eeeehhhcCCchHH
Confidence 33445555556555555555552 555 55555555555544
No 14
>KOG0444|consensus
Probab=99.31 E-value=4.8e-13 Score=92.72 Aligned_cols=111 Identities=25% Similarity=0.445 Sum_probs=68.8
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCC
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 87 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~ 87 (127)
+.++.|+.+.+..|++....+|+++|. +..|..+|+++|++.++|.. +-...+.-.|+++ .|.+.++|...|..++.
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS-~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLS-YNNIETIPNSLFINLTD 151 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcc-cccceeeecchhhhhhcchh-hhhhcCcEEEEcc-cCccccCCchHHHhhHh
Confidence 345555566666666554456666643 66666666666666666654 2334555666666 66666666666666666
Q ss_pred CcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031 88 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122 (127)
Q Consensus 88 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i 122 (127)
|-.+++++|.+..+|+.+ ..+..|..|.+++|++
T Consensus 152 LLfLDLS~NrLe~LPPQ~-RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQI-RRLSMLQTLKLSNNPL 185 (1255)
T ss_pred HhhhccccchhhhcCHHH-HHHhhhhhhhcCCChh
Confidence 666666666666666664 5666666666666644
No 15
>KOG0444|consensus
Probab=99.29 E-value=5.7e-13 Score=92.34 Aligned_cols=118 Identities=28% Similarity=0.473 Sum_probs=94.0
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
||+++|. +.-|..|++|+|++. +.|.++ ..-.+...|++++|++..||...|-++.-|-.|+++ +|++..+|++.
T Consensus 95 iP~diF~-l~dLt~lDLShNqL~--EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS-~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 95 IPTDIFR-LKDLTILDLSHNQLR--EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS-NNRLEMLPPQI 169 (1255)
T ss_pred CCchhcc-cccceeeecchhhhh--hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc-cchhhhcCHHH
Confidence 7888987 789999999999976 888876 778889999999999999998888888899999999 99999999986
Q ss_pred hccCCCCcEEEecCcccccc--------------------------ChhhhcCCccccEEeccCCcccccC
Q psy8031 82 FRDCKKLVKLELQRNKLKYL--------------------------PENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~--------------------------~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
..+..|+.+.+++|.+..+ |..+ ..+.+|..++++.|.+..+|
T Consensus 170 -RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 170 -RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred -HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCCCcch
Confidence 6677788888888766432 2221 23455666777777666665
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.26 E-value=1.7e-11 Score=73.44 Aligned_cols=104 Identities=23% Similarity=0.299 Sum_probs=53.6
Q ss_pred CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCCC
Q psy8031 9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKK 87 (127)
Q Consensus 9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~ 87 (127)
.+.+++.|++++|++. .++. +..++.|+.|++++|+++.+.......+++|+.|.++ +|.+..+.. ..+..+++
T Consensus 40 ~l~~L~~L~Ls~N~I~--~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~-~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQIT--KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS-NNKISDLNELEPLSSLPK 114 (175)
T ss_dssp T-TT--EEE-TTS--S----TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T-TS---SCCCCGGGGG-TT
T ss_pred hhcCCCEEECCCCCCc--cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc-CCcCCChHHhHHHHcCCC
Confidence 4678999999999987 7764 5789999999999999999876533458999999999 999987755 33457899
Q ss_pred CcEEEecCccccccCh---hhhcCCccccEEec
Q psy8031 88 LVKLELQRNKLKYLPE---NLFESLKELYTLNL 117 (127)
Q Consensus 88 l~~l~l~~n~~~~~~~---~~~~~~~~l~~l~l 117 (127)
|+.+++.+|.++.-+. .++..+++|+.||-
T Consensus 115 L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 115 LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999999999986544 34456788888875
No 17
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=99.23 E-value=7.4e-11 Score=67.45 Aligned_cols=111 Identities=16% Similarity=0.353 Sum_probs=78.5
Q ss_pred CCchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80 (127)
Q Consensus 1 ~i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~ 80 (127)
+|+..+|.++.+|+.+.+.. .+. .++...|..+..++.+.+..+ +..++...|..+..++.+.+. . .+..++..
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~--~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~-~-~~~~i~~~ 75 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIK--KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP-N-NLKSIGDN 75 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET-S-TT-EE-TT
T ss_pred EECHHHHhCCCCCCEEEECC-Cee--EeChhhccccccccccccccc-ccccceeeeeccccccccccc-c-cccccccc
Confidence 36889999999999999985 444 899999999999999999884 888888889998889999998 6 77888888
Q ss_pred hhccCCCCcEEEecCccccccChhhhcCCccccEEeccC
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~ 119 (127)
.|..+.+++.+.+..+ +..++...|.++ .+..+.+..
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 8988899999999775 778888778887 888888765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.08 E-value=7.1e-10 Score=79.50 Aligned_cols=100 Identities=26% Similarity=0.437 Sum_probs=61.8
Q ss_pred cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l 91 (127)
.++.|++++|.+. .+|...+ .+|+.|++++|+++.+|... ..+|+.|+++ +|.+..+|.... .+|+.|
T Consensus 200 ~L~~L~Ls~N~Lt--sLP~~l~---~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls-~N~L~~LP~~l~---s~L~~L 267 (754)
T PRK15370 200 QITTLILDNNELK--SLPENLQ---GNIKTLYANSNQLTSIPATL---PDTIQEMELS-INRITELPERLP---SALQSL 267 (754)
T ss_pred CCcEEEecCCCCC--cCChhhc---cCCCEEECCCCccccCChhh---hccccEEECc-CCccCcCChhHh---CCCCEE
Confidence 4677777777765 6766553 46777777777777666542 2356666776 666666655432 356666
Q ss_pred EecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 92 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 92 ~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
++++|.++.+|..++ ..|+.|++++|.++.+|
T Consensus 268 ~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 268 DLFHNKISCLPENLP---EELRYLSVYDNSIRTLP 299 (754)
T ss_pred ECcCCccCccccccC---CCCcEEECCCCccccCc
Confidence 776666666665431 35666666666666554
No 19
>KOG0618|consensus
Probab=99.05 E-value=4.4e-11 Score=85.42 Aligned_cols=110 Identities=22% Similarity=0.323 Sum_probs=80.0
Q ss_pred hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 85 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~ 85 (127)
++.+...|+.|++++|+++ .+|+..+..+..|+.|++++|+++.++.. ...+..|+.|... +|.+..+|. +..+
T Consensus 378 ~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~~Lp~t-va~~~~L~tL~ah-sN~l~~fPe--~~~l 451 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLTTLPDT-VANLGRLHTLRAH-SNQLLSFPE--LAQL 451 (1081)
T ss_pred hhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhhhhhHH-HHhhhhhHHHhhc-CCceeechh--hhhc
Confidence 3456778888888888876 88888888888888888888888888754 4557777887777 788877773 3556
Q ss_pred CCCcEEEecCccccccChhhhcCCccccEEeccCCc
Q psy8031 86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121 (127)
Q Consensus 86 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~ 121 (127)
+.++.++++.|.++.+-...--..++|++|++++|.
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred CcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 788888888887764322211233678888888874
No 20
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=99.02 E-value=2.3e-09 Score=61.21 Aligned_cols=104 Identities=20% Similarity=0.406 Sum_probs=68.4
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
|+..+|.+++.++.+.+.++ +. .++..+|..+..++.+.+.. .+..++...|..+..++.+.++ .+ +..++...
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~-~~-~~~i~~~~ 99 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP-SN-ITEIGSSS 99 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET-TT--BEEHTTT
T ss_pred eChhhccccccccccccccc-cc--ccceeeeecccccccccccc-cccccccccccccccccccccC-cc-ccEEchhh
Confidence 57789999999999999885 55 89999999998999999976 7778888889989999999998 75 88899988
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCcccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELY 113 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~ 113 (127)
|.++ .++.+.+.. .+..++...|.++++|.
T Consensus 100 f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 100 FSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT--T--EEE-TT-B-SS----GGG------
T ss_pred hcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9887 899988875 66778888888887763
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.01 E-value=6.8e-10 Score=79.60 Aligned_cols=88 Identities=24% Similarity=0.419 Sum_probs=59.5
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+|...+ .+|+.|++++|.+. .+|... ...|+.|++++|++..+|.... ..|+.|+++ +|.+..+|...
T Consensus 214 LP~~l~---~nL~~L~Ls~N~Lt--sLP~~l---~~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls-~N~L~~LP~~l 281 (754)
T PRK15370 214 LPENLQ---GNIKTLYANSNQLT--SIPATL---PDTIQEMELSINRITELPERLP---SALQSLDLF-HNKISCLPENL 281 (754)
T ss_pred CChhhc---cCCCEEECCCCccc--cCChhh---hccccEEECcCCccCcCChhHh---CCCCEEECc-CCccCcccccc
Confidence 444443 46888888888866 777654 3467788888888887776532 467778888 77777776543
Q ss_pred hccCCCCcEEEecCccccccChh
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPEN 104 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~ 104 (127)
+ .+|+.|++++|.++.+|..
T Consensus 282 ~---~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 282 P---EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred C---CCCcEEECCCCccccCccc
Confidence 2 4677777777777766543
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.00 E-value=3.1e-09 Score=75.25 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=80.1
Q ss_pred cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l 91 (127)
.++.|++++|.+. +.+|.. +..++.|+.|++++|.+....+..+..++.|+.|+++ +|.+....+..+..+++|+.+
T Consensus 419 ~v~~L~L~~n~L~-g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs-~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLR-GFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS-YNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCcc-ccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECC-CCCCCCCCchHHhcCCCCCEE
Confidence 3677889999875 455554 5889999999999999984333347888999999999 998885545556788999999
Q ss_pred EecCcccc-ccChhhhcC-CccccEEeccCCc
Q psy8031 92 ELQRNKLK-YLPENLFES-LKELYTLNLKNNQ 121 (127)
Q Consensus 92 ~l~~n~~~-~~~~~~~~~-~~~l~~l~l~~n~ 121 (127)
++++|.+. .+|..+ +. ..++..+++.+|.
T Consensus 496 ~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNGNSLSGRVPAAL-GGRLLHRASFNFTDNA 526 (623)
T ss_pred ECcCCcccccCChHH-hhccccCceEEecCCc
Confidence 99999876 677764 33 3456677777763
No 23
>KOG0532|consensus
Probab=98.97 E-value=4.3e-11 Score=81.83 Aligned_cols=108 Identities=27% Similarity=0.554 Sum_probs=59.1
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCC-------------
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL------------- 74 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~------------- 74 (127)
.++..|+.++++.|+++ .+|.++ +.+ .|+.+.+++|+++.+|... +...++..++.+ .|.+
T Consensus 118 ~~L~~lt~l~ls~NqlS--~lp~~l-C~l-pLkvli~sNNkl~~lp~~i-g~~~tl~~ld~s-~nei~slpsql~~l~sl 191 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLS--HLPDGL-CDL-PLKVLIVSNNKLTSLPEEI-GLLPTLAHLDVS-KNEIQSLPSQLGYLTSL 191 (722)
T ss_pred hhhhHHHHhhhccchhh--cCChhh-hcC-cceeEEEecCccccCCccc-ccchhHHHhhhh-hhhhhhchHHhhhHHHH
Confidence 34555555666666654 555544 222 2555555566555555442 234445555555 4444
Q ss_pred ----------eeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 75 ----------TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 75 ----------~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
..+|++. . .-.|..++++.|++..+|.. |..++.|+.|-|.+|++++
T Consensus 192 r~l~vrRn~l~~lp~El-~-~LpLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 192 RDLNVRRNHLEDLPEEL-C-SLPLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHhhhhhhhCCHHH-h-CCceeeeecccCceeecchh-hhhhhhheeeeeccCCCCC
Confidence 4454443 2 23455666666666666666 4666666667666666654
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.97 E-value=3e-09 Score=76.41 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=43.3
Q ss_pred cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh----------
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL---------- 81 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~---------- 81 (127)
+++.|++.+|++. .+|. ..++|++|++++|+++.+|.. .++|+.|++. .|.+..++...
T Consensus 223 ~L~~L~L~~N~Lt--~LP~----lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls-~N~L~~Lp~lp~~L~~L~Ls~ 291 (788)
T PRK15387 223 HITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQLTSLPVL----PPGLLELSIF-SNPLTHLPALPSGLCKLWIFG 291 (788)
T ss_pred CCCEEEccCCcCC--CCCC----CCCCCcEEEecCCccCcccCc----ccccceeecc-CCchhhhhhchhhcCEEECcC
Confidence 4666677777655 5654 246677777777777766531 2344444444 44443332200
Q ss_pred ------hccCCCCcEEEecCccccccCh
Q psy8031 82 ------FRDCKKLVKLELQRNKLKYLPE 103 (127)
Q Consensus 82 ------~~~~~~l~~l~l~~n~~~~~~~ 103 (127)
....++|+.|++++|.++.+|.
T Consensus 292 N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 292 NQLTSLPVLPPGLQELSVSDNQLASLPA 319 (788)
T ss_pred CccccccccccccceeECCCCccccCCC
Confidence 0012456677777776665543
No 25
>KOG0618|consensus
Probab=98.90 E-value=2.6e-10 Score=81.65 Aligned_cols=114 Identities=20% Similarity=0.277 Sum_probs=94.4
Q ss_pred CCchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80 (127)
Q Consensus 1 ~i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~ 80 (127)
++|+..++++..|++|++|||.+. .+|... ..|..|++|+..+|++..+|. +..+++++.+|++ .|.++.+.-.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~--~Lp~tv-a~~~~L~tL~ahsN~l~~fPe--~~~l~qL~~lDlS-~N~L~~~~l~ 470 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT--TLPDTV-ANLGRLHTLRAHSNQLLSFPE--LAQLPQLKVLDLS-CNNLSEVTLP 470 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh--hhhHHH-HhhhhhHHHhhcCCceeechh--hhhcCcceEEecc-cchhhhhhhh
Confidence 478999999999999999999976 999766 889999999999999999884 6678999999999 9999865332
Q ss_pred hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCC
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n 120 (127)
.-...++|+.++++||....+....|..+.+++.+++.-|
T Consensus 471 ~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 471 EALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 1122378999999999877777777777777777776555
No 26
>KOG1259|consensus
Probab=98.87 E-value=3.7e-10 Score=72.50 Aligned_cols=108 Identities=23% Similarity=0.274 Sum_probs=54.9
Q ss_pred ceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh-----------
Q psy8031 13 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL----------- 81 (127)
Q Consensus 13 l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~----------- 81 (127)
|+++|+++|.++ .++.+. .-.|.++.++++.|.+..+.. +..+++|+.++++ +|.+..+..+.
T Consensus 286 LtelDLS~N~I~--~iDESv-KL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS-~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 286 LTELDLSGNLIT--QIDESV-KLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLS-GNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhccccccchh--hhhhhh-hhccceeEEeccccceeeehh--hhhcccceEeecc-cchhHhhhhhHhhhcCEeeeeh
Confidence 445555555544 444443 445555555555555555543 2334555555555 55444333221
Q ss_pred ----------hccCCCCcEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031 82 ----------FRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ----------~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
..-+.+|..+++++|.+..+.+ .-++.++.|.++.+.+|+++.++
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 1223445555566665554433 11245566666666777666554
No 27
>KOG0532|consensus
Probab=98.85 E-value=7.1e-10 Score=76.07 Aligned_cols=89 Identities=25% Similarity=0.435 Sum_probs=60.5
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~ 89 (127)
...|..++.+.|++. .+|+.+ +++.+++.+.+..|.+..+|... ..+ .|..+|++ +|++..+|-. |..+..|+
T Consensus 165 ~~tl~~ld~s~nei~--slpsql-~~l~slr~l~vrRn~l~~lp~El-~~L-pLi~lDfS-cNkis~iPv~-fr~m~~Lq 237 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQ--SLPSQL-GYLTSLRDLNVRRNHLEDLPEEL-CSL-PLIRLDFS-CNKISYLPVD-FRKMRHLQ 237 (722)
T ss_pred chhHHHhhhhhhhhh--hchHHh-hhHHHHHHHHHhhhhhhhCCHHH-hCC-ceeeeecc-cCceeecchh-hhhhhhhe
Confidence 344444444555443 444443 44555555555666666666553 333 47789999 9999999877 78899999
Q ss_pred EEEecCccccccChhh
Q psy8031 90 KLELQRNKLKYLPENL 105 (127)
Q Consensus 90 ~l~l~~n~~~~~~~~~ 105 (127)
.+-|.+|.++.=|..+
T Consensus 238 ~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 238 VLQLENNPLQSPPAQI 253 (722)
T ss_pred eeeeccCCCCCChHHH
Confidence 9999999999777765
No 28
>KOG1259|consensus
Probab=98.84 E-value=4.7e-10 Score=72.05 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=61.7
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccCh---------------------hhhcCCCCCcEE
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS---------------------DLFWNSTNITNI 66 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~---------------------~~~~~~~~l~~l 66 (127)
.-.+.++.|++++|.+. .+.. +..+++|+.+|+++|.++++.. +.+..+.+|..+
T Consensus 304 KL~Pkir~L~lS~N~i~--~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnL 379 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNRIR--TVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNL 379 (490)
T ss_pred hhccceeEEecccccee--eehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheec
Confidence 34567777888888764 4544 3567777777877776554321 012335677788
Q ss_pred EecCCCCCeeecc-hhhccCCCCcEEEecCccccccCh
Q psy8031 67 VLTGHKKLTSLPS-TLFRDCKKLVKLELQRNKLKYLPE 103 (127)
Q Consensus 67 ~l~~~n~~~~~~~-~~~~~~~~l~~l~l~~n~~~~~~~ 103 (127)
++. +|+++.+.. ...+.++.|+++.+.+|.+..+++
T Consensus 380 Dl~-~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 380 DLS-SNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ccc-ccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 888 888886533 223568899999999999887665
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.79 E-value=1.3e-08 Score=73.19 Aligned_cols=100 Identities=28% Similarity=0.403 Sum_probs=68.0
Q ss_pred cceEEEecCCcCcccccCccccCC-----------------CCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCC
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFAN-----------------LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~-----------------~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~ 74 (127)
+|+.|++++|++. .+|... .. ...|+.|++++|+++.+|.. .++++.|+++ +|.+
T Consensus 343 ~Lq~LdLS~N~Ls--~LP~lp-~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS-~N~L 414 (788)
T PRK15387 343 GLQELSVSDNQLA--SLPTLP-SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELKELMVS-GNRL 414 (788)
T ss_pred ccceEecCCCccC--CCCCCC-cccceehhhccccccCcccccccceEEecCCcccCCCCc----ccCCCEEEcc-CCcC
Confidence 6778888888765 555311 11 12456666666666655532 2456777777 7777
Q ss_pred eeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 75 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 75 ~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
..+|.. ...+..+++++|.++.+|.. +..+++|..+++++|+++.
T Consensus 415 ssIP~l----~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 415 TSLPML----PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCCCcc----hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCc
Confidence 766542 23567788888888888887 4788899999999998874
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.75 E-value=7.2e-08 Score=72.62 Aligned_cols=107 Identities=24% Similarity=0.425 Sum_probs=64.9
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecCC-cccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCC
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l 88 (127)
.++|+.|++++|.. +..+|.. ++.+++|+.|++++| .+..+|... .+++|+.+++++.+.+..++.. ..++
T Consensus 777 ~~sL~~L~Ls~n~~-l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~----~~nL 848 (1153)
T PLN03210 777 SPSLTRLFLSDIPS-LVELPSS-IQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI----STNI 848 (1153)
T ss_pred cccchheeCCCCCC-ccccChh-hhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc----cccc
Confidence 45677778877753 3456655 477888888888765 466666542 4566777777622344444321 2456
Q ss_pred cEEEecCccccccChhhhcCCccccEEeccC-Cccccc
Q psy8031 89 VKLELQRNKLKYLPENLFESLKELYTLNLKN-NQLENI 125 (127)
Q Consensus 89 ~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~-n~i~~~ 125 (127)
+.+++++|.+..+|..+ ..+++|+.+++++ +.+..+
T Consensus 849 ~~L~Ls~n~i~~iP~si-~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 849 SDLNLSRTGIEEVPWWI-EKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CEeECCCCCCccChHHH-hcCCCCCEEECCCCCCcCcc
Confidence 66777777776666653 5666666666665 344443
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.71 E-value=6.2e-08 Score=68.77 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=69.2
Q ss_pred CcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCcccc-ccChhhhcCCccccEEec
Q psy8031 39 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNL 117 (127)
Q Consensus 39 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~~~~~l~~l~l 117 (127)
+..|++++|.+....+..+..+++|+.|+++ .|.+....+..+..+++|+.|++++|.+. .+|+. ++.+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls-~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLS-GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECC-CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 6788999999985444458889999999999 99987443434688999999999999987 56666 589999999999
Q ss_pred cCCccc
Q psy8031 118 KNNQLE 123 (127)
Q Consensus 118 ~~n~i~ 123 (127)
++|.++
T Consensus 498 s~N~l~ 503 (623)
T PLN03150 498 NGNSLS 503 (623)
T ss_pred cCCccc
Confidence 999887
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.71 E-value=1.8e-07 Score=70.57 Aligned_cols=86 Identities=23% Similarity=0.296 Sum_probs=45.3
Q ss_pred CCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCC-CCeeecchhhccCCCCcEEEecCc-cccccChhhhcCCcccc
Q psy8031 36 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK-KLTSLPSTLFRDCKKLVKLELQRN-KLKYLPENLFESLKELY 113 (127)
Q Consensus 36 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n-~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~ 113 (127)
..+|..|++.++++..++.. +..+++|+.++++ .+ .+..+|. +..+++|+.+++.++ .+..+|.. ++.+++|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls-~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~ 684 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLR-GSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSS-IQYLNKLE 684 (1153)
T ss_pred ccCCcEEECcCccccccccc-cccCCCCCEEECC-CCCCcCcCCc--cccCCcccEEEecCCCCccccchh-hhccCCCC
Confidence 34555556655555555443 3445566666665 43 3444443 344556666666654 34555554 35566666
Q ss_pred EEeccCC-cccccC
Q psy8031 114 TLNLKNN-QLENIT 126 (127)
Q Consensus 114 ~l~l~~n-~i~~~~ 126 (127)
.|++++| .+..+|
T Consensus 685 ~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 685 DLDMSRCENLEILP 698 (1153)
T ss_pred EEeCCCCCCcCccC
Confidence 6666553 344433
No 33
>KOG4579|consensus
Probab=98.71 E-value=1e-09 Score=62.91 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=60.7
Q ss_pred EEEecCCcCcccccCccc--cCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEE
Q psy8031 15 VIKISYHKDSLKELPSGL--FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92 (127)
Q Consensus 15 ~l~l~~~~~~~~~~~~~~--~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~ 92 (127)
.++++.|++- .+++-. ......++.+++++|.+.++|+..-..++.++.+++. +|.+..+|.+ +..++.|+.++
T Consensus 31 ~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lN 106 (177)
T KOG4579|consen 31 FLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLN 106 (177)
T ss_pred hcccccchhh--HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcc
Confidence 3555666532 333211 1334445556666776666666532334566666666 6666666666 45566666677
Q ss_pred ecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 93 l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
++.|.+...|.-++ .+.++..|+..+|.+..+|
T Consensus 107 l~~N~l~~~p~vi~-~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIA-PLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCccccchHHHH-HHHhHHHhcCCCCccccCc
Confidence 77666666655543 3566666666666555443
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.66 E-value=3.7e-08 Score=64.24 Aligned_cols=38 Identities=37% Similarity=0.383 Sum_probs=19.7
Q ss_pred CCCcEEEecCccccccCh----hhhcCCccccEEeccCCccc
Q psy8031 86 KKLVKLELQRNKLKYLPE----NLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 86 ~~l~~l~l~~n~~~~~~~----~~~~~~~~l~~l~l~~n~i~ 123 (127)
++|+.+++++|.+..... ..+..+++|+.+++++|.++
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 456666666655542211 11234556666666666554
No 35
>KOG1644|consensus
Probab=98.65 E-value=1.2e-07 Score=57.65 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=67.6
Q ss_pred cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l 91 (127)
.-+++++.+.++. .+.. .-....+...+|+++|.+-.++. |..++.|.+|.+. +|++..+.+..-..++++..|
T Consensus 20 ~e~e~~LR~lkip--~ien-lg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~-nNrIt~I~p~L~~~~p~l~~L 93 (233)
T KOG1644|consen 20 RERELDLRGLKIP--VIEN-LGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLN-NNRITRIDPDLDTFLPNLKTL 93 (233)
T ss_pred ccccccccccccc--chhh-ccccccccceecccccchhhccc--CCCccccceEEec-CCcceeeccchhhhccccceE
Confidence 3455666666654 3332 22334566777777777766553 5667777788887 778877766544445667777
Q ss_pred EecCccccccCh-hhhcCCccccEEeccCCcccc
Q psy8031 92 ELQRNKLKYLPE-NLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 92 ~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~ 124 (127)
.+.+|.+..+.+ .-...|++|+.|.+-+|+++.
T Consensus 94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred EecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 787777765432 112456777777777777654
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.64 E-value=3.9e-08 Score=45.70 Aligned_cols=39 Identities=38% Similarity=0.632 Sum_probs=21.7
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+|+.+++++|.+++++.. ++.+++|+.+++++|++++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCc
Confidence 455666666666666553 356666666666666665543
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.57 E-value=1.5e-07 Score=43.76 Aligned_cols=39 Identities=28% Similarity=0.540 Sum_probs=23.3
Q ss_pred cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccC
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP 53 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~ 53 (127)
+|+.|++++|++. ++|+. ++.+++|+.+++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~--~l~~~-l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPE-LSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-S--SHGGH-GTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCc--ccCch-HhCCCCCCEEEecCCCCCCCc
Confidence 4666666766655 66653 366666666666666666554
No 38
>KOG1644|consensus
Probab=98.52 E-value=2.4e-07 Score=56.41 Aligned_cols=104 Identities=23% Similarity=0.362 Sum_probs=76.9
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCCCCc
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLV 89 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~l~ 89 (127)
.+...+|+++|++- .++. |..++.|++|.+.+|.++.|.+..-.-++.+..|.+. +|.++.+.. .-...|++|+
T Consensus 42 d~~d~iDLtdNdl~--~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt-nNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT-NNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchh--hccc--CCCccccceEEecCCcceeeccchhhhccccceEEec-CcchhhhhhcchhccCCccc
Confidence 35667889999864 4443 5789999999999999999987754456889999999 998887654 2234678999
Q ss_pred EEEecCccccccCh---hhhcCCccccEEeccC
Q psy8031 90 KLELQRNKLKYLPE---NLFESLKELYTLNLKN 119 (127)
Q Consensus 90 ~l~l~~n~~~~~~~---~~~~~~~~l~~l~l~~ 119 (127)
.+.+-+|.+++... .+...+++++.||+++
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99999998775432 2233457788888754
No 39
>KOG4579|consensus
Probab=98.51 E-value=1.3e-08 Score=58.42 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=78.5
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~ 89 (127)
...|..+++++|++. ++|+.+-...+.++.+++++|++.++|.. +..++.|+.++++ .|.+...+.-.+. +.++.
T Consensus 52 ~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~-~N~l~~~p~vi~~-L~~l~ 126 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLR-FNPLNAEPRVIAP-LIKLD 126 (177)
T ss_pred CceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccc-cCccccchHHHHH-HHhHH
Confidence 344666799999976 89988767788899999999999999988 7889999999999 9999988876554 78888
Q ss_pred EEEecCccccccChhhh
Q psy8031 90 KLELQRNKLKYLPENLF 106 (127)
Q Consensus 90 ~l~l~~n~~~~~~~~~~ 106 (127)
.++..+|.+..++-+.|
T Consensus 127 ~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 127 MLDSPENARAEIDVDLF 143 (177)
T ss_pred HhcCCCCccccCcHHHh
Confidence 89999999988887754
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.44 E-value=1.2e-07 Score=63.89 Aligned_cols=44 Identities=32% Similarity=0.521 Sum_probs=24.6
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccCh
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS 54 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 54 (127)
+.++.|+.|++++|++. +++... ...+.++.+++++|++..++.
T Consensus 160 ~~l~~L~~L~l~~N~l~--~l~~~~-~~~~~L~~L~ls~N~i~~l~~ 203 (394)
T COG4886 160 RNLPNLKNLDLSFNDLS--DLPKLL-SNLSNLNNLDLSGNKISDLPP 203 (394)
T ss_pred hccccccccccCCchhh--hhhhhh-hhhhhhhheeccCCccccCch
Confidence 44555666666666554 555432 245556666666666665554
No 41
>KOG1859|consensus
Probab=98.43 E-value=5.1e-09 Score=74.05 Aligned_cols=100 Identities=26% Similarity=0.383 Sum_probs=54.2
Q ss_pred EEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecC
Q psy8031 16 IKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 95 (127)
Q Consensus 16 l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~ 95 (127)
.++++|.+. .++.. +.-++.++.|++++|+++++. .+..++.|..||++ .|.+..+|.-...+|. |..+.+++
T Consensus 169 a~fsyN~L~--~mD~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDls-yN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 169 ASFSYNRLV--LMDES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLS-YNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hhcchhhHH--hHHHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccc-cchhccccccchhhhh-heeeeecc
Confidence 344555432 33322 244556666666666666554 23445666666666 6666666553323333 66666666
Q ss_pred ccccccChhhhcCCccccEEeccCCcccc
Q psy8031 96 NKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 96 n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
|.++.+... .++.+|..||+++|.+..
T Consensus 242 N~l~tL~gi--e~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 242 NALTTLRGI--ENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred cHHHhhhhH--HhhhhhhccchhHhhhhc
Confidence 666655442 455666666666665443
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.38 E-value=2.3e-07 Score=62.48 Aligned_cols=103 Identities=30% Similarity=0.469 Sum_probs=53.2
Q ss_pred ccceEEEecCCcCcccccCccccCCCC-CCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLP-LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~ 89 (127)
+.+..+++.++.+. ++++.. .... .++.+++++|++..++.. ...++.|+.|+++ .|.+..++... ...+.+.
T Consensus 116 ~~l~~L~l~~n~i~--~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~-~N~l~~l~~~~-~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNNIT--DIPPLI-GLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLS-FNDLSDLPKLL-SNLSNLN 189 (394)
T ss_pred cceeEEecCCcccc--cCcccc-ccchhhcccccccccchhhhhhh-hhccccccccccC-Cchhhhhhhhh-hhhhhhh
Confidence 34555555555544 555543 2232 566666666665555321 2345556666666 66665555532 1345555
Q ss_pred EEEecCccccccChhhhcCCccccEEeccCC
Q psy8031 90 KLELQRNKLKYLPENLFESLKELYTLNLKNN 120 (127)
Q Consensus 90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n 120 (127)
.+++++|.+..+|... .....|..+.+++|
T Consensus 190 ~L~ls~N~i~~l~~~~-~~~~~L~~l~~~~N 219 (394)
T COG4886 190 NLDLSGNKISDLPPEI-ELLSALEELDLSNN 219 (394)
T ss_pred heeccCCccccCchhh-hhhhhhhhhhhcCC
Confidence 5666666666555542 23334555555555
No 43
>KOG1859|consensus
Probab=98.38 E-value=6.4e-09 Score=73.55 Aligned_cols=110 Identities=24% Similarity=0.263 Sum_probs=84.3
Q ss_pred hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 85 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~ 85 (127)
.+.-++.++.|++++|++. +.. .+..++.|+.||++.|.+..+|.-...++. |+.|.+. +|.++.+.. ...+
T Consensus 182 SLqll~ale~LnLshNk~~--~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr-nN~l~tL~g--ie~L 253 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFT--KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR-NNALTTLRG--IENL 253 (1096)
T ss_pred HHHHHHHhhhhccchhhhh--hhH--HHHhcccccccccccchhccccccchhhhh-heeeeec-ccHHHhhhh--HHhh
Confidence 3455778999999999976 555 457899999999999999988764333444 9999999 999888865 2457
Q ss_pred CCCcEEEecCccccccCh-hhhcCCccccEEeccCCccc
Q psy8031 86 KKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 86 ~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~ 123 (127)
.+|+.|+++.|.+....+ .....+..|+.|.+.+|++.
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 889999999998875533 11234567888999999875
No 44
>KOG0531|consensus
Probab=98.38 E-value=1.4e-07 Score=64.04 Aligned_cols=110 Identities=19% Similarity=0.282 Sum_probs=63.2
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCC
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 87 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~ 87 (127)
..+.+++.+++.+|.+. .+... ...+++|+++++++|.++.+.. +..++.|+.|.+. +|.+..+.. +..+..
T Consensus 92 ~~~~~l~~l~l~~n~i~--~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~-~N~i~~~~~--~~~l~~ 163 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE--KIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLS-GNLISDISG--LESLKS 163 (414)
T ss_pred ccccceeeeeccccchh--hcccc-hhhhhcchheeccccccccccc--hhhccchhhheec-cCcchhccC--Cccchh
Confidence 34556666666666654 44442 2456666777777776666654 2334556666666 666666654 333566
Q ss_pred CcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 88 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 88 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
++.+++++|.+..+.......+.++..+.+.+|.+..+
T Consensus 164 L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred hhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 66666666666666551013455566666666655443
No 45
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.37 E-value=8.6e-07 Score=57.86 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=69.9
Q ss_pred hhcCCccceEEEecCCcCcccccCccccCCCCC---CcEEEecCCcccccC----hhhhcCC-CCCcEEEecCCCCCeee
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPL---LNTVILGESSIAELP----SDLFWNS-TNITNIVLTGHKKLTSL 77 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~---l~~l~l~~n~~~~~~----~~~~~~~-~~l~~l~l~~~n~~~~~ 77 (127)
.|..+++|+.|++++|.+. ......+..+.. ++.+++++|.++... ...+..+ ++++.++++ .+.++.-
T Consensus 76 ~l~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~-~n~l~~~ 152 (319)
T cd00116 76 GLTKGCGLQELDLSDNALG--PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG-RNRLEGA 152 (319)
T ss_pred HHHhcCceeEEEccCCCCC--hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC-CCcCCch
Confidence 4556778888888888764 333333333443 888888888776311 1123344 678888888 7776621
Q ss_pred c----chhhccCCCCcEEEecCccccc-----cChhhhcCCccccEEeccCCccc
Q psy8031 78 P----STLFRDCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 78 ~----~~~~~~~~~l~~l~l~~n~~~~-----~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
. ...+..+..++.+++++|.++. +... +...+.|+.+++++|.++
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEeccCCccC
Confidence 1 1234455678888888887762 2222 234467888888888765
No 46
>KOG4658|consensus
Probab=98.34 E-value=4.1e-07 Score=66.75 Aligned_cols=89 Identities=25% Similarity=0.357 Sum_probs=41.6
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
+.+.|..++.|+.||+++|. .+.++|..+ +.+-+|++|++++..+..+|.+ +..+..|.+|++. .+......+...
T Consensus 563 s~~ff~~m~~LrVLDLs~~~-~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~-~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNS-SLSKLPSSI-GELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLE-VTGRLESIPGIL 638 (889)
T ss_pred CHHHHhhCcceEEEECCCCC-ccCcCChHH-hhhhhhhcccccCCCccccchH-HHHHHhhheeccc-cccccccccchh
Confidence 33445555555555555543 233455444 4455555555555555555544 3444455555555 433222223333
Q ss_pred ccCCCCcEEEecC
Q psy8031 83 RDCKKLVKLELQR 95 (127)
Q Consensus 83 ~~~~~l~~l~l~~ 95 (127)
..+++|+.+.+..
T Consensus 639 ~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 639 LELQSLRVLRLPR 651 (889)
T ss_pred hhcccccEEEeec
Confidence 3345555555443
No 47
>KOG0531|consensus
Probab=98.29 E-value=1.9e-07 Score=63.39 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=84.2
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~ 89 (127)
+..++.+.+..|.+. .+... ...+.++..+++.+|++..+... ...+++|+.++++ .|.+..+.+- ..+..|.
T Consensus 71 l~~l~~l~l~~n~i~--~~~~~-l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls-~N~I~~i~~l--~~l~~L~ 143 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA--KILNH-LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLS-FNKITKLEGL--STLTLLK 143 (414)
T ss_pred hHhHHhhccchhhhh--hhhcc-cccccceeeeeccccchhhcccc-hhhhhcchheecc-ccccccccch--hhccchh
Confidence 455666667777654 42322 36788999999999999988763 3568899999999 9999988763 4466799
Q ss_pred EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.|++.+|.++.+... ..+..|..+++++|.+..+.
T Consensus 144 ~L~l~~N~i~~~~~~--~~l~~L~~l~l~~n~i~~ie 178 (414)
T KOG0531|consen 144 ELNLSGNLISDISGL--ESLKSLKLLDLSYNRIVDIE 178 (414)
T ss_pred hheeccCcchhccCC--ccchhhhcccCCcchhhhhh
Confidence 999999999988663 56889999999999887654
No 48
>KOG4658|consensus
Probab=98.16 E-value=2.1e-06 Score=63.17 Aligned_cols=107 Identities=26% Similarity=0.363 Sum_probs=66.1
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecCC-cccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCC
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l 88 (127)
++.|+.|.+.+|.-.+..++..+|..++.|.+||+++| .+.++|.. .+.+.+|++|+++ ...+..+|... ..+..|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~-~t~I~~LP~~l-~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLS-DTGISHLPSGL-GNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhccccc-CCCccccchHH-HHHHhh
Confidence 34566777776641012566666777777777777754 45566655 3556777777777 77777777663 566677
Q ss_pred cEEEecCccccccChhhhcCCccccEEeccC
Q psy8031 89 VKLELQRNKLKYLPENLFESLKELYTLNLKN 119 (127)
Q Consensus 89 ~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~ 119 (127)
.+|++..+.-......+...+.+|+.+.+..
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeec
Confidence 7777776643322233335566777666644
No 49
>KOG3207|consensus
Probab=98.14 E-value=4e-07 Score=61.08 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=58.3
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCCCCc
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLV 89 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~l~ 89 (127)
++++.|.+++|+++-.++. .....+|++..|+++.|..-.+.......+.+|+.|+++ +|.+-..+. .....++.|.
T Consensus 197 ~~lK~L~l~~CGls~k~V~-~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs-~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQ-WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS-NNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhheEEeccCCCCHHHHH-HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc-CCcccccccccccccccchh
Confidence 3444444455544311111 122345666666666653111111112335667777777 666555442 1123466777
Q ss_pred EEEecCccccccCh--h----hhcCCccccEEeccCCcccccC
Q psy8031 90 KLELQRNKLKYLPE--N----LFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 90 ~l~l~~n~~~~~~~--~----~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.++++.+.+.++.. . .....++|+.|++..|+|+.++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 77777777764422 1 0112367888888888876554
No 50
>KOG1909|consensus
Probab=98.10 E-value=3.3e-06 Score=55.32 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=65.4
Q ss_pred hhcCCccceEEEecCCcCcccccC--ccccCCCCCCcEEEecCCcccccChhh-------------hcCCCCCcEEEecC
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELP--SGLFANLPLLNTVILGESSIAELPSDL-------------FWNSTNITNIVLTG 70 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~~~~~l~~l~l~~n~~~~~~~~~-------------~~~~~~l~~l~l~~ 70 (127)
++..+++|+.+++|.|.+....++ ..++..+..|+.|++.+|.+....... ...-+.|+.+...
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~- 165 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG- 165 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee-
Confidence 445677888888888877522222 113345677788888777766432221 1234567777776
Q ss_pred CCCCeeecc----hhhccCCCCcEEEecCccccc----cChhhhcCCccccEEeccCCccc
Q psy8031 71 HKKLTSLPS----TLFRDCKKLVKLELQRNKLKY----LPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 71 ~n~~~~~~~----~~~~~~~~l~~l~l~~n~~~~----~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
+|++..-+. ..|+.++.+..+.++.|.+.. +-...|..++.|+.|+++.|.++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 676653332 234445556666666665531 11122455666666666666543
No 51
>KOG3207|consensus
Probab=98.07 E-value=9.5e-07 Score=59.37 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=41.4
Q ss_pred CCCCcEEEecCCcccccC-hhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccCh-hhhcCCcccc
Q psy8031 36 LPLLNTVILGESSIAELP-SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-NLFESLKELY 113 (127)
Q Consensus 36 ~~~l~~l~l~~n~~~~~~-~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~ 113 (127)
+++++.|.++.|.++.-. ......+|+++.|.+. .|....+....+.-++.|+.|++++|.+-+++. ...+.++.|.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~-~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLE-ANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhh-cccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 444555555555554211 1112334555555555 442111111111223456666666666554442 1124556666
Q ss_pred EEeccCCccccc
Q psy8031 114 TLNLKNNQLENI 125 (127)
Q Consensus 114 ~l~l~~n~i~~~ 125 (127)
.+.++.+.+.++
T Consensus 275 ~Lnls~tgi~si 286 (505)
T KOG3207|consen 275 QLNLSSTGIASI 286 (505)
T ss_pred hhhccccCcchh
Confidence 666666666553
No 52
>KOG1909|consensus
Probab=97.89 E-value=7.4e-06 Score=53.74 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=79.0
Q ss_pred hhhcCCccceEEEecCCcCccccc--CccccCCCCCCcEEEecCCcccccC----hhhhcCCCCCcEEEecCCCCCeeec
Q psy8031 5 DLFAEMKYLQVIKISYHKDSLKEL--PSGLFANLPLLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLTSLP 78 (127)
Q Consensus 5 ~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~~ 78 (127)
.+|+.++.|+.+.+++|.+....+ -...|..++.|+.|++.+|.++... ..+++.+++|+.+.++ ++.+..-+
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~-dcll~~~G 257 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG-DCLLENEG 257 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc-cccccccc
Confidence 456777788888888888742222 2334677899999999999888432 2356777888899888 77766433
Q ss_pred chhh-----ccCCCCcEEEecCccccc-----cChhhhcCCccccEEeccCCcc
Q psy8031 79 STLF-----RDCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNLKNNQL 122 (127)
Q Consensus 79 ~~~~-----~~~~~l~~l~l~~n~~~~-----~~~~~~~~~~~l~~l~l~~n~i 122 (127)
...| ...++|..+.+.+|.++. +... ....+.|..|.+++|.+
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~-~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAAC-MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH-HhcchhhHHhcCCcccc
Confidence 2211 246788889999988762 1112 23457888899999887
No 53
>KOG3665|consensus
Probab=97.66 E-value=6.6e-05 Score=54.27 Aligned_cols=110 Identities=22% Similarity=0.238 Sum_probs=58.2
Q ss_pred CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc--hhhccCC
Q psy8031 9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS--TLFRDCK 86 (127)
Q Consensus 9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~--~~~~~~~ 86 (127)
-+|.|+.|.+.+-.+.-.+ -......+++|..||+++.+++.+. ..+.+++|+.|.+. +=.+..... ..| .++
T Consensus 146 ~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl~--GIS~LknLq~L~mr-nLe~e~~~~l~~LF-~L~ 220 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNLS--GISRLKNLQVLSMR-NLEFESYQDLIDLF-NLK 220 (699)
T ss_pred hCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCcH--HHhccccHHHHhcc-CCCCCchhhHHHHh-ccc
Confidence 3566666666665442111 1123345666677777766666552 23455666666655 433332211 223 367
Q ss_pred CCcEEEecCccccccCh------hhhcCCccccEEeccCCccc
Q psy8031 87 KLVKLELQRNKLKYLPE------NLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~------~~~~~~~~l~~l~l~~n~i~ 123 (127)
+|+.|+++......-+. .....++.|+.||.+++.+.
T Consensus 221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 77777777654332221 11234577778887776554
No 54
>KOG3665|consensus
Probab=97.60 E-value=4e-05 Score=55.35 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=77.3
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccC-hhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~ 89 (127)
.+|+.|+++|.+.-....+......+|+|+.|.+.+-.+..-. .....++++|..||++ +.++..+.. .+.+.+|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-~TnI~nl~G--IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-GTNISNLSG--ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-CCCccCcHH--HhccccHH
Confidence 4588899999775334455555567999999999987765322 2335678999999999 988888732 35678888
Q ss_pred EEEecCccccccCh-hhhcCCccccEEeccCCc
Q psy8031 90 KLELQRNKLKYLPE-NLFESLKELYTLNLKNNQ 121 (127)
Q Consensus 90 ~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~ 121 (127)
.|.+++=.+..... ....++++|+.||+|...
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 88877666553221 122478999999998764
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.33 E-value=0.0018 Score=44.27 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=38.2
Q ss_pred CCccceEEEecCCcCcccccCccccCCCCCCcEEEecC-CcccccChhhhcCCCCCcEEEecCCC-CCeeec
Q psy8031 9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNSTNITNIVLTGHK-KLTSLP 78 (127)
Q Consensus 9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~~n-~~~~~~ 78 (127)
.+..++.|++++|.+. .+|. + ..+++.|.+.+ +.++.+|.. + ..+|+.|.+. .+ .+..+|
T Consensus 50 ~~~~l~~L~Is~c~L~--sLP~-L---P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls-~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDCDIE--SLPV-L---PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVC-HCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCCCCc--ccCC-C---CCCCcEEEccCCCCcccCCch-h--hhhhhheEcc-Ccccccccc
Confidence 3678889999999765 7772 1 34688888876 455555543 2 2467777777 54 444443
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.11 E-value=0.0023 Score=41.47 Aligned_cols=117 Identities=13% Similarity=0.155 Sum_probs=69.4
Q ss_pred hhcCCccceEEEecCCcCcccccC--ccccCCCCCCcEEEecCCcccccChhhh-------------cCCCCCcEEEecC
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELP--SGLFANLPLLNTVILGESSIAELPSDLF-------------WNSTNITNIVLTG 70 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~~~~~l~~l~l~~n~~~~~~~~~~-------------~~~~~l~~l~l~~ 70 (127)
++..|++++.+++|.|.+.....+ .++.+....+..|.+.+|.+..+..... ..-|.|+.+...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg- 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG- 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec-
Confidence 456799999999999988633222 1234667889999999998775543221 234678888877
Q ss_pred CCCCeeecch----hhccCCCCcEEEecCcccccc--Chhh---hcCCccccEEeccCCccc
Q psy8031 71 HKKLTSLPST----LFRDCKKLVKLELQRNKLKYL--PENL---FESLKELYTLNLKNNQLE 123 (127)
Q Consensus 71 ~n~~~~~~~~----~~~~~~~l~~l~l~~n~~~~~--~~~~---~~~~~~l~~l~l~~n~i~ 123 (127)
.|++..-+.. .+.....+..+.+..|.+..- ..-+ ...+.+|..|+++.|-++
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 7877644332 122223556666666655411 0000 124456666666666544
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.08 E-value=0.00035 Score=27.23 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=4.2
Q ss_pred ceEEEecCCc
Q psy8031 13 LQVIKISYHK 22 (127)
Q Consensus 13 l~~l~l~~~~ 22 (127)
|+.|++++|+
T Consensus 2 L~~Ldls~n~ 11 (22)
T PF00560_consen 2 LEYLDLSGNN 11 (22)
T ss_dssp ESEEEETSSE
T ss_pred ccEEECCCCc
Confidence 3444444443
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.02 E-value=0.00042 Score=27.01 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=17.6
Q ss_pred CCcEEEecCCcccccChhhhcC
Q psy8031 38 LLNTVILGESSIAELPSDLFWN 59 (127)
Q Consensus 38 ~l~~l~l~~n~~~~~~~~~~~~ 59 (127)
+|++|++++|+++.+|+. |+.
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT
T ss_pred CccEEECCCCcCEeCChh-hcC
Confidence 478999999999998876 653
No 59
>KOG2982|consensus
Probab=96.98 E-value=0.00016 Score=47.07 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=24.7
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEec
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 69 (127)
+.++.+++.+|.++-++--..+..++|.++.|++++|++.......-....+++.+.+.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLN 129 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLN 129 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEc
Confidence 34445555555544222222233445555555555555443221111133445555554
No 60
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.93 E-value=0.00058 Score=24.86 Aligned_cols=16 Identities=44% Similarity=0.681 Sum_probs=7.7
Q ss_pred cccEEeccCCcccccC
Q psy8031 111 ELYTLNLKNNQLENIT 126 (127)
Q Consensus 111 ~l~~l~l~~n~i~~~~ 126 (127)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666666654
No 61
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.72 E-value=0.0017 Score=26.23 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=9.9
Q ss_pred CCcEEEecCCcccccChhhh
Q psy8031 38 LLNTVILGESSIAELPSDLF 57 (127)
Q Consensus 38 ~l~~l~l~~n~~~~~~~~~~ 57 (127)
+|+.+++.+|+++.+|...|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 44555555555555554443
No 62
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.72 E-value=0.0017 Score=26.23 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=9.9
Q ss_pred CCcEEEecCCcccccChhhh
Q psy8031 38 LLNTVILGESSIAELPSDLF 57 (127)
Q Consensus 38 ~l~~l~l~~n~~~~~~~~~~ 57 (127)
+|+.+++.+|+++.+|...|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 44555555555555554443
No 63
>KOG2123|consensus
Probab=96.62 E-value=9.9e-05 Score=47.63 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=56.7
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCCCC
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKL 88 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~l 88 (127)
+.+++.|++-||++. +|.- -..++.+++|.++-|+++.+.+ |..+..|.+|.|. .|.|..+.. ....++++|
T Consensus 18 l~~vkKLNcwg~~L~--DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLR-kN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD--DISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLR-KNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCcc--HHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHH-hcccccHHHHHHHhcCchh
Confidence 455667777777765 4442 2467778888888888887765 5667778888888 777776644 333567788
Q ss_pred cEEEecCccc
Q psy8031 89 VKLELQRNKL 98 (127)
Q Consensus 89 ~~l~l~~n~~ 98 (127)
+.|.+..|..
T Consensus 91 r~LWL~ENPC 100 (388)
T KOG2123|consen 91 RTLWLDENPC 100 (388)
T ss_pred hhHhhccCCc
Confidence 8888777754
No 64
>KOG2123|consensus
Probab=96.59 E-value=5.5e-05 Score=48.74 Aligned_cols=58 Identities=29% Similarity=0.461 Sum_probs=25.6
Q ss_pred CCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccCh-hhhcCCccccEEeccCC
Q psy8031 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNN 120 (127)
Q Consensus 60 ~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n 120 (127)
++.|+.|.|+ -|.++.+.+ +..|++|+.++|+.|.|.++.+ ..++++++|+.|.+..|
T Consensus 40 Mp~lEVLsLS-vNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 40 MPLLEVLSLS-VNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred cccceeEEee-ccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 3444444444 444444433 3344444444454444444433 12234444444444444
No 65
>KOG2739|consensus
Probab=96.59 E-value=0.0017 Score=41.33 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=6.8
Q ss_pred CCCCCcEEEecCC
Q psy8031 35 NLPLLNTVILGES 47 (127)
Q Consensus 35 ~~~~l~~l~l~~n 47 (127)
.++.|+.|.++.|
T Consensus 63 ~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 63 KLPKLKKLELSDN 75 (260)
T ss_pred CcchhhhhcccCC
Confidence 3445555555555
No 66
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.58 E-value=0.0017 Score=26.21 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.8
Q ss_pred CccceEEEecCCcCcccccCccccC
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFA 34 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~ 34 (127)
+++|+.|++++|++. .+|+++|.
T Consensus 1 L~~L~~L~L~~N~l~--~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS--SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC--cCCHHHcc
Confidence 467899999999987 99998875
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.58 E-value=0.0017 Score=26.21 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.8
Q ss_pred CccceEEEecCCcCcccccCccccC
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFA 34 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~ 34 (127)
+++|+.|++++|++. .+|+++|.
T Consensus 1 L~~L~~L~L~~N~l~--~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS--SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC--cCCHHHcc
Confidence 467899999999987 99998875
No 68
>KOG2982|consensus
Probab=96.55 E-value=0.001 Score=43.52 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=61.0
Q ss_pred CCCCCcEEEecCCcccccCh--hhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCcccc--ccChhhhcCCc
Q psy8031 35 NLPLLNTVILGESSIAELPS--DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK--YLPENLFESLK 110 (127)
Q Consensus 35 ~~~~l~~l~l~~n~~~~~~~--~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~--~~~~~~~~~~~ 110 (127)
.+...+.+|+.+|.++.... .....+|.++.|+++ .|.+..-....-....+++.+-+.++.+. ..... ...++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~-l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS-LDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCccccCcccccceEEEEEcCCCCChhhhhhh-hhcch
Confidence 45678899999999885432 335678999999999 99887443332123568899999888653 33333 46778
Q ss_pred cccEEeccCCccc
Q psy8031 111 ELYTLNLKNNQLE 123 (127)
Q Consensus 111 ~l~~l~l~~n~i~ 123 (127)
++++++++.|..+
T Consensus 147 ~vtelHmS~N~~r 159 (418)
T KOG2982|consen 147 KVTELHMSDNSLR 159 (418)
T ss_pred hhhhhhhccchhh
Confidence 8888888888554
No 69
>KOG2739|consensus
Probab=96.25 E-value=0.0051 Score=39.23 Aligned_cols=87 Identities=21% Similarity=0.244 Sum_probs=56.1
Q ss_pred CCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCe---eecchhhccCCCCcEEEecCccccccChh-hhcCC
Q psy8031 34 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT---SLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESL 109 (127)
Q Consensus 34 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~---~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~~~ 109 (127)
..+..++.+.+.+..++.+.. |..++.|+.|.++ .|... .+..-+ ..+++++++++++|+++.+... -...+
T Consensus 40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~ls-dn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELS-DNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccchhhhhhhccceeeccc--CCCcchhhhhccc-CCcccccccceehh-hhCCceeEEeecCCccccccccchhhhh
Confidence 445566666666666665543 5668899999999 88433 222222 3458999999999998753221 01344
Q ss_pred ccccEEeccCCcccc
Q psy8031 110 KELYTLNLKNNQLEN 124 (127)
Q Consensus 110 ~~l~~l~l~~n~i~~ 124 (127)
.+|..|++..+....
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 567788887776543
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.13 E-value=0.024 Score=38.95 Aligned_cols=62 Identities=24% Similarity=0.420 Sum_probs=45.3
Q ss_pred CCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCc-cccccCh
Q psy8031 35 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN-KLKYLPE 103 (127)
Q Consensus 35 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~ 103 (127)
.+..+..|++++|.++.+|. + ..+|+.|.+.+.+.+..+|... ..+|+.|.++++ .+..+|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc
Confidence 47889999999999998872 2 3579999998336777666543 257888888877 5665554
No 71
>KOG2120|consensus
Probab=95.98 E-value=0.00045 Score=45.13 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=46.2
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCC-cccccCh-hhhcCCCCCcEEEecCCCCCee-e-cchhh
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SIAELPS-DLFWNSTNITNIVLTGHKKLTS-L-PSTLF 82 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~-~~~~~~~~l~~l~l~~~n~~~~-~-~~~~~ 82 (127)
+..|.+|+.|.+.++++. ..+-.. ...-..|..++++++ .+++-.. -.+..+..|..|+++ +..... . .-.+-
T Consensus 206 Ls~C~kLk~lSlEg~~Ld-D~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNls-Wc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLD-DPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLS-WCFLFTEKVTVAVA 282 (419)
T ss_pred HHHHHhhhhccccccccC-cHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCch-HhhccchhhhHHHh
Confidence 344555555555555442 112222 234445555555543 3333221 124445555555555 443321 0 00000
Q ss_pred ccCCCCcEEEecCcc--c--cccChhhhcCCccccEEeccCC
Q psy8031 83 RDCKKLVKLELQRNK--L--KYLPENLFESLKELYTLNLKNN 120 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~--~--~~~~~~~~~~~~~l~~l~l~~n 120 (127)
.--+++.+++++|.. + .++..- -..++.+.+||+++|
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDS 323 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccc
Confidence 011244455554431 1 122111 135677778888775
No 72
>KOG2120|consensus
Probab=95.50 E-value=0.00027 Score=46.11 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=50.4
Q ss_pred cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCCCCcE
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLVK 90 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~l~~ 90 (127)
+++.+|+++..++...+. .++..+..|+.+.++++++.+-.......-..|+.++++..+.++...- ..+..|+.|..
T Consensus 186 Rlq~lDLS~s~it~stl~-~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH-GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHH-HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 466677777665422222 2345667777777777777643333334456677777773355654322 33456777777
Q ss_pred EEecCccc
Q psy8031 91 LELQRNKL 98 (127)
Q Consensus 91 l~l~~n~~ 98 (127)
++++.+.+
T Consensus 265 LNlsWc~l 272 (419)
T KOG2120|consen 265 LNLSWCFL 272 (419)
T ss_pred cCchHhhc
Confidence 77776643
No 73
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=94.47 E-value=0.029 Score=22.73 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=10.9
Q ss_pred cccEEeccCCcccccCC
Q psy8031 111 ELYTLNLKNNQLENITR 127 (127)
Q Consensus 111 ~l~~l~l~~n~i~~~~~ 127 (127)
.|+.|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666667777666663
No 74
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=93.57 E-value=0.067 Score=21.68 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=12.1
Q ss_pred ccccEEeccCCccccc
Q psy8031 110 KELYTLNLKNNQLENI 125 (127)
Q Consensus 110 ~~l~~l~l~~n~i~~~ 125 (127)
.+|+.|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4677888888887765
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.57 E-value=0.18 Score=33.15 Aligned_cols=115 Identities=19% Similarity=0.251 Sum_probs=75.8
Q ss_pred hhcCCccceEEEecCCcCcccccCcccc-------------CCCCCCcEEEecCCcccccChh----hhcCCCCCcEEEe
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELPSGLF-------------ANLPLLNTVILGESSIAELPSD----LFWNSTNITNIVL 68 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~-------------~~~~~l~~l~l~~n~~~~~~~~----~~~~~~~l~~l~l 68 (127)
..+..+.+..|.+.+|++. .+..... ..-|.|++++...|++..-+.. .+.....+..+.+
T Consensus 115 ~is~~t~l~HL~l~NnGlG--p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki 192 (388)
T COG5238 115 LISSSTDLVHLKLNNNGLG--PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKI 192 (388)
T ss_pred HHhcCCCceeEEeecCCCC--ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEe
Confidence 4466788999999999864 4433222 2347789999988887754432 2333457888888
Q ss_pred cCCCCCeee--cchhhc---cCCCCcEEEecCccccccCh----hhhcCCccccEEeccCCccc
Q psy8031 69 TGHKKLTSL--PSTLFR---DCKKLVKLELQRNKLKYLPE----NLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 69 ~~~n~~~~~--~~~~~~---~~~~l~~l~l~~n~~~~~~~----~~~~~~~~l~~l~l~~n~i~ 123 (127)
. .|.+..- ..-.|. .+++|+.++++.|.++...+ ...+.|+.|+.|.+..+.++
T Consensus 193 ~-qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 193 Q-QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred e-ecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 8 8876522 111222 36789999999998874433 33456677888888877654
No 76
>KOG0473|consensus
Probab=92.39 E-value=0.0013 Score=41.67 Aligned_cols=83 Identities=13% Similarity=0.205 Sum_probs=46.3
Q ss_pred CCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEE
Q psy8031 36 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 115 (127)
Q Consensus 36 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l 115 (127)
....+.||++.|++-.+... |+.+..+..++++ .|.+..+|... .....+..+++..|.....|-. ++..+.++.+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~s-knq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLS-KNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKS-QKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHHhhccc-hHHHHHHHHHhcc-HhhHhhChhhH-HHHHHHHHHHhhccchhhCCcc-ccccCCcchh
Confidence 44555666666665554443 4445556666666 66666555542 3334455556666666666555 3555666666
Q ss_pred eccCCcc
Q psy8031 116 NLKNNQL 122 (127)
Q Consensus 116 ~l~~n~i 122 (127)
++.+|.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 6555543
No 77
>KOG0473|consensus
Probab=92.37 E-value=0.0017 Score=41.14 Aligned_cols=76 Identities=22% Similarity=0.399 Sum_probs=58.0
Q ss_pred cccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 48 SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 48 ~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.++++|-...........+|++ .|++..+... |+-++.+.+++++.|.+..+|.+ ++....+..+++..|+.+..|
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~-s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLS-SNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQP 104 (326)
T ss_pred Hhcccchhhhhccceeeeehhh-hhHHHhhccc-hHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCC
Confidence 3444443323345677889999 9988887766 57778899999999999999998 488888888998888777655
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.61 E-value=0.11 Score=20.28 Aligned_cols=14 Identities=50% Similarity=0.653 Sum_probs=7.8
Q ss_pred ccccEEeccCCccc
Q psy8031 110 KELYTLNLKNNQLE 123 (127)
Q Consensus 110 ~~l~~l~l~~n~i~ 123 (127)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45667777777665
No 79
>KOG3864|consensus
Probab=90.50 E-value=0.067 Score=33.24 Aligned_cols=80 Identities=19% Similarity=0.123 Sum_probs=43.0
Q ss_pred CCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh-ccCCCCcEEEecCc-cccccChhhhcCCccccEE
Q psy8031 38 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF-RDCKKLVKLELQRN-KLKYLPENLFESLKELYTL 115 (127)
Q Consensus 38 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~-~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~~l 115 (127)
.++.++-++..+....-..+.++..++.+.+.+...+....-+-. ...++|+.|+++++ .|++-....+...++|+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 356666677776665554566666666666651123322111101 12457777887766 5665554444455555555
Q ss_pred ec
Q psy8031 116 NL 117 (127)
Q Consensus 116 ~l 117 (127)
.+
T Consensus 182 ~l 183 (221)
T KOG3864|consen 182 HL 183 (221)
T ss_pred Hh
Confidence 44
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.69 E-value=0.47 Score=19.36 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=9.3
Q ss_pred ccccEEeccCCccc
Q psy8031 110 KELYTLNLKNNQLE 123 (127)
Q Consensus 110 ~~l~~l~l~~n~i~ 123 (127)
++|+.|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35677777777664
No 81
>KOG3763|consensus
Probab=79.25 E-value=1.5 Score=31.53 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=15.7
Q ss_pred CCCcEEEecCCcccccCh--hhhcCCCCCcEEEecCCC
Q psy8031 37 PLLNTVILGESSIAELPS--DLFWNSTNITNIVLTGHK 72 (127)
Q Consensus 37 ~~l~~l~l~~n~~~~~~~--~~~~~~~~l~~l~l~~~n 72 (127)
+.+..+.+++|++..+.. ..-...|.+..|+|+ +|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS-~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLS-HN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecc-cc
Confidence 444455555555443321 111234555555555 54
No 82
>KOG3864|consensus
Probab=77.15 E-value=1 Score=28.26 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=40.3
Q ss_pred CCcEEEecCCCCCeeecchhhccCCCCcEEEecCcc-ccccChhhhcC-CccccEEeccCC-cccc
Q psy8031 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK-LKYLPENLFES-LKELYTLNLKNN-QLEN 124 (127)
Q Consensus 62 ~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~~-~~~l~~l~l~~n-~i~~ 124 (127)
.++.++-+ +..+...+-..+.++..++.+.+.+++ +.+.-..-.++ .++|+.|++++| .|++
T Consensus 102 ~IeaVDAs-ds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 102 KIEAVDAS-DSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred eEEEEecC-CchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 46677777 766666666666777888888887663 33332222233 378999999987 5654
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=72.79 E-value=3.3 Score=35.59 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=27.8
Q ss_pred EecCCcCcccccCccccCCCCCCcEEEecCCccc
Q psy8031 17 KISYHKDSLKELPSGLFANLPLLNTVILGESSIA 50 (127)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~ 50 (127)
+|++|+|. .++.+.|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls--tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS--TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC--ccChHHhccCCCceEEEeeCCccc
Confidence 47889877 899999999999999999998766
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.42 E-value=2.2 Score=16.80 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=7.3
Q ss_pred ccceEEEecCCc
Q psy8031 11 KYLQVIKISYHK 22 (127)
Q Consensus 11 ~~l~~l~l~~~~ 22 (127)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666664
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=71.66 E-value=3 Score=35.77 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.3
Q ss_pred CCchhhhcCCccceEEEecCCcCc
Q psy8031 1 MFPKDLFAEMKYLQVIKISYHKDS 24 (127)
Q Consensus 1 ~i~~~~~~~~~~l~~l~l~~~~~~ 24 (127)
.||+++|..+++|+.|+|++|.+.
T Consensus 9 tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 9 TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred ccChHHhccCCCceEEEeeCCccc
Confidence 478999999999999999999864
No 86
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=65.72 E-value=2.6 Score=16.93 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=10.6
Q ss_pred hcCCccceEEEecCCcC
Q psy8031 7 FAEMKYLQVIKISYHKD 23 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~ 23 (127)
|.++..+..|+++....
T Consensus 2 F~~~~~~~~ldls~wdt 18 (26)
T TIGR02167 2 FSGCSSLTSLDVSNWDT 18 (26)
T ss_pred CCccccccccccccccc
Confidence 55666666666666543
No 87
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=65.42 E-value=0.68 Score=26.17 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=39.6
Q ss_pred hhhcCCccceEEEecCCcCcccccC--ccccCCCCCCcEEEecCCcccccC--hhhhcCCCCCcEEEecCCCCCeee--c
Q psy8031 5 DLFAEMKYLQVIKISYHKDSLKELP--SGLFANLPLLNTVILGESSIAELP--SDLFWNSTNITNIVLTGHKKLTSL--P 78 (127)
Q Consensus 5 ~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~~~~~l~~l~l~~n~~~~~~--~~~~~~~~~l~~l~l~~~n~~~~~--~ 78 (127)
.+|.+++.++ .++...... .+. .+.|.++..+ ..+++.-....+. .+.|.++..+.. +++ .-....+ .
T Consensus 5 ~~F~~~~~l~-~~i~~~dts--~vt~m~~mF~~~~~l-~~~l~~w~~s~vt~m~~mF~~~~~l~~-dls-~w~~s~v~~~ 78 (120)
T PF03382_consen 5 SMFANCTNLN-IDISNWDTS--NVTDMSYMFYGCTSL-NQDLSNWDTSNVTNMSGMFAGCSSLNQ-DLS-NWDTSNVTNM 78 (120)
T ss_pred HHHHhchhcc-CCccccccc--cceeHHHHhhcchhc-cCChhhhcchhheeHHHHHhhhhhcCC-Ccc-cccccccccH
Confidence 5678887776 666665543 222 3456666666 2234433333221 235666666665 554 3222222 2
Q ss_pred chhhccCCCC
Q psy8031 79 STLFRDCKKL 88 (127)
Q Consensus 79 ~~~~~~~~~l 88 (127)
...|.++..+
T Consensus 79 ~~mF~~~~~l 88 (120)
T PF03382_consen 79 SNMFSGCSSL 88 (120)
T ss_pred HHHHhhhHHc
Confidence 3556666665
No 88
>KOG1947|consensus
Probab=59.22 E-value=11 Score=26.11 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=6.4
Q ss_pred CCCCCCcEEEecC
Q psy8031 34 ANLPLLNTVILGE 46 (127)
Q Consensus 34 ~~~~~l~~l~l~~ 46 (127)
..++.++.+++++
T Consensus 211 ~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 211 LKCPNLEELDLSG 223 (482)
T ss_pred hhCchhheecccC
Confidence 3445555555544
No 89
>KOG3763|consensus
Probab=56.43 E-value=9.8 Score=27.70 Aligned_cols=62 Identities=27% Similarity=0.304 Sum_probs=28.0
Q ss_pred CCCCcEEEecCCCCCeeecc--hhhccCCCCcEEEecCc--cccccCh-hhhcCCccccEEeccCCccc
Q psy8031 60 STNITNIVLTGHKKLTSLPS--TLFRDCKKLVKLELQRN--KLKYLPE-NLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 60 ~~~l~~l~l~~~n~~~~~~~--~~~~~~~~l~~l~l~~n--~~~~~~~-~~~~~~~~l~~l~l~~n~i~ 123 (127)
.+.+..+.++ +|++..+.. ..-...+++..|+|++| .+....+ ..++ ...|+++-+.+|++.
T Consensus 217 ~p~i~sl~ls-nNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLS-NNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLC 283 (585)
T ss_pred Ccceeeeecc-cchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccc
Confidence 3455555666 665554322 11123455666666666 2222111 1111 123556666666554
No 90
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=37.78 E-value=17 Score=14.63 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=6.7
Q ss_pred hhcCCccceEEEe
Q psy8031 6 LFAEMKYLQVIKI 18 (127)
Q Consensus 6 ~~~~~~~l~~l~l 18 (127)
+|..+++|+.||.
T Consensus 8 Vi~~LPqL~~LD~ 20 (26)
T smart00446 8 VIRLLPQLRKLDX 20 (26)
T ss_pred HHHHCCccceecc
Confidence 3444555555554
No 91
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=27.26 E-value=49 Score=12.36 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=4.8
Q ss_pred cEEeccCCccc
Q psy8031 113 YTLNLKNNQLE 123 (127)
Q Consensus 113 ~~l~l~~n~i~ 123 (127)
..|++.+.++.
T Consensus 3 VeL~m~~S~le 13 (20)
T PF07725_consen 3 VELNMPYSKLE 13 (20)
T ss_pred EEEECCCCChH
Confidence 34444444443
No 92
>KOG4341|consensus
Probab=23.12 E-value=41 Score=23.97 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=51.5
Q ss_pred cCCccceEEEecCCcCcccccCcc-ccCCCCCCcEEEecCCcccccC--hhhhcCCCCCcEEEecCCCC-Ceee-----c
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSG-LFANLPLLNTVILGESSIAELP--SDLFWNSTNITNIVLTGHKK-LTSL-----P 78 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~-~~~~~~~l~~l~l~~n~~~~~~--~~~~~~~~~l~~l~l~~~n~-~~~~-----~ 78 (127)
.++++|+.+.+++++. +....-. +-..++.|+.+++......... ...-.+++.++.+.++ +.. ++.. .
T Consensus 317 ~~~~~L~~l~l~~c~~-fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls-hce~itD~gi~~l~ 394 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQ-FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS-HCELITDEGIRHLS 394 (483)
T ss_pred cCCCceEEEeccccch-hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChh-hhhhhhhhhhhhhh
Confidence 4567888888888872 1122111 1135667777777765433111 1112356677777666 432 2211 1
Q ss_pred chhhccCCCCcEEEecCccc-cccChhhhcCCccccEEec
Q psy8031 79 STLFRDCKKLVKLELQRNKL-KYLPENLFESLKELYTLNL 117 (127)
Q Consensus 79 ~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~~~~~l~~l~l 117 (127)
... .+...+..+.+++... ++--......++.|+.+++
T Consensus 395 ~~~-c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 395 SSS-CSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred hcc-ccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 111 2334556666666543 3222222344555555554
Done!