Query psy8031
Match_columns 127
No_of_seqs 116 out of 1410
Neff 11.2
Searched_HMMs 29240
Date Fri Aug 16 16:41:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m19_A Variable lymphocyte rec 99.9 3.7E-21 1.3E-25 120.5 12.0 122 2-126 50-171 (251)
2 2v9t_B SLIT homolog 2 protein 99.9 2.1E-21 7.2E-26 119.7 9.8 117 3-122 48-164 (220)
3 2o6q_A Variable lymphocyte rec 99.9 1E-20 3.6E-25 119.6 12.0 121 3-126 77-197 (270)
4 2o6q_A Variable lymphocyte rec 99.9 1.5E-20 5.1E-25 118.9 11.9 122 2-126 52-173 (270)
5 2v9t_B SLIT homolog 2 protein 99.8 1.4E-20 4.7E-25 116.0 10.9 113 11-126 32-144 (220)
6 2o6s_A Variable lymphocyte rec 99.8 2.2E-20 7.6E-25 114.0 11.5 119 2-123 43-161 (208)
7 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-20 5.4E-25 115.7 10.8 118 3-123 49-166 (220)
8 3m19_A Variable lymphocyte rec 99.8 2.7E-20 9.3E-25 116.6 11.5 120 2-124 74-193 (251)
9 2xot_A Amphoterin-induced prot 99.8 1.9E-20 6.7E-25 122.7 11.0 122 2-126 54-179 (361)
10 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-20 4.5E-25 130.2 10.1 121 2-125 67-188 (635)
11 3e6j_A Variable lymphocyte rec 99.8 4.8E-20 1.7E-24 114.2 11.6 117 3-123 56-172 (229)
12 4g8a_A TOLL-like receptor 4; l 99.8 2.3E-20 7.8E-25 129.1 11.1 112 11-125 52-163 (635)
13 3e6j_A Variable lymphocyte rec 99.8 6.1E-20 2.1E-24 113.7 11.1 118 2-126 34-151 (229)
14 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.7E-24 110.5 11.4 114 10-126 27-140 (208)
15 2wfh_A SLIT homolog 2 protein 99.8 1.1E-19 3.8E-24 110.0 10.4 115 2-123 25-139 (193)
16 3rfs_A Internalin B, repeat mo 99.8 2.3E-19 7.9E-24 113.6 11.6 116 4-122 102-217 (272)
17 2o6r_A Variable lymphocyte rec 99.8 2.5E-19 8.6E-24 106.9 10.9 112 10-124 27-138 (177)
18 2xwt_C Thyrotropin receptor; s 99.8 6.9E-20 2.4E-24 114.0 8.3 120 2-126 46-172 (239)
19 3rfs_A Internalin B, repeat mo 99.8 3.9E-19 1.3E-23 112.6 11.9 118 6-126 80-197 (272)
20 1ozn_A Reticulon 4 receptor; N 99.8 4.2E-19 1.4E-23 112.9 12.1 117 5-124 99-215 (285)
21 2v70_A SLIT-2, SLIT homolog 2 99.8 3.7E-19 1.3E-23 109.6 10.8 113 11-126 32-145 (220)
22 1ozn_A Reticulon 4 receptor; N 99.8 4.6E-19 1.6E-23 112.7 10.8 118 4-124 49-167 (285)
23 1p9a_G Platelet glycoprotein I 99.8 6.7E-19 2.3E-23 112.5 11.3 113 10-126 76-188 (290)
24 3o6n_A APL1; leucine-rich repe 99.8 3.4E-19 1.2E-23 117.7 10.2 121 2-125 60-180 (390)
25 1w8a_A SLIT protein; signaling 99.8 5.4E-19 1.9E-23 106.8 10.0 116 2-123 23-139 (192)
26 2xot_A Amphoterin-induced prot 99.8 6.7E-19 2.3E-23 115.5 11.1 119 2-126 33-152 (361)
27 3zyj_A Leucine-rich repeat-con 99.8 7.9E-19 2.7E-23 117.7 11.5 121 3-126 80-201 (440)
28 2xwt_C Thyrotropin receptor; s 99.8 4.7E-19 1.6E-23 110.2 9.3 120 3-126 72-221 (239)
29 3zyi_A Leucine-rich repeat-con 99.8 1E-18 3.5E-23 117.4 11.3 121 3-126 91-212 (452)
30 1p9a_G Platelet glycoprotein I 99.8 1E-18 3.4E-23 111.7 10.6 119 2-126 46-164 (290)
31 2z62_A TOLL-like receptor 4, v 99.8 1E-18 3.6E-23 110.6 9.9 120 3-126 44-165 (276)
32 3oja_B Anopheles plasmodium-re 99.8 9.6E-19 3.3E-23 121.1 10.5 122 2-126 66-187 (597)
33 3v47_A TOLL-like receptor 5B a 99.8 1.9E-18 6.6E-23 115.9 10.9 119 3-124 291-409 (455)
34 2id5_A Lingo-1, leucine rich r 99.8 1.4E-18 4.7E-23 117.3 10.1 117 4-123 49-165 (477)
35 2id5_A Lingo-1, leucine rich r 99.8 4.5E-18 1.6E-22 114.8 11.7 122 2-126 71-192 (477)
36 3g39_A Variable lymphocyte rec 99.8 4.8E-18 1.7E-22 100.9 9.9 107 11-123 9-115 (170)
37 3zyj_A Leucine-rich repeat-con 99.8 6.5E-18 2.2E-22 113.2 11.2 119 2-125 103-222 (440)
38 3vq2_A TLR4, TOLL-like recepto 99.8 5.5E-18 1.9E-22 117.2 10.2 121 2-126 47-169 (606)
39 2ell_A Acidic leucine-rich nuc 99.8 5.9E-18 2E-22 100.1 8.9 115 7-126 45-163 (168)
40 2r9u_A Variable lymphocyte rec 99.8 1.2E-17 4.1E-22 99.5 10.0 108 12-125 13-120 (174)
41 2z80_A TOLL-like receptor 2, v 99.8 3.3E-18 1.1E-22 111.7 8.1 119 3-124 68-188 (353)
42 3zyi_A Leucine-rich repeat-con 99.7 1.4E-17 4.7E-22 112.0 10.8 118 2-124 114-232 (452)
43 2z63_A TOLL-like receptor 4, v 99.7 9.5E-18 3.3E-22 115.1 10.2 120 2-125 43-164 (570)
44 1a9n_A U2A', U2A'; complex (nu 99.7 2E-17 7E-22 98.5 10.4 114 7-126 15-129 (176)
45 2z62_A TOLL-like receptor 4, v 99.7 8.8E-18 3E-22 106.4 9.2 121 2-125 67-192 (276)
46 1ziw_A TOLL-like receptor 3; i 99.7 1.8E-17 6E-22 116.0 11.4 119 5-126 474-600 (680)
47 1ziw_A TOLL-like receptor 3; i 99.7 8.3E-18 2.8E-22 117.7 9.7 120 2-124 40-159 (680)
48 2z66_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 104.9 11.0 118 5-125 120-238 (306)
49 2wfh_A SLIT homolog 2 protein 99.7 5.1E-17 1.8E-21 98.2 10.5 108 13-127 12-119 (193)
50 2z80_A TOLL-like receptor 2, v 99.7 8.3E-18 2.8E-22 109.8 7.1 119 3-124 92-212 (353)
51 3t6q_A CD180 antigen; protein- 99.7 1.9E-17 6.6E-22 114.5 9.2 119 3-124 49-167 (606)
52 1xku_A Decorin; proteoglycan, 99.7 1.1E-16 3.7E-21 103.7 12.0 115 5-126 165-279 (330)
53 3v47_A TOLL-like receptor 5B a 99.7 9.7E-17 3.3E-21 107.6 11.6 113 11-126 275-387 (455)
54 3sb4_A Hypothetical leucine ri 99.7 5.2E-17 1.8E-21 105.3 9.9 88 36-126 225-313 (329)
55 1xku_A Decorin; proteoglycan, 99.7 1.2E-16 4.1E-21 103.4 11.4 119 2-126 67-187 (330)
56 3o6n_A APL1; leucine-rich repe 99.7 3.5E-17 1.2E-21 108.1 8.9 114 10-126 44-157 (390)
57 2o6r_A Variable lymphocyte rec 99.7 1.4E-16 4.9E-21 94.9 10.4 109 12-126 8-116 (177)
58 3vq2_A TLR4, TOLL-like recepto 99.7 6.2E-17 2.1E-21 111.9 9.8 119 5-126 418-537 (606)
59 2z63_A TOLL-like receptor 4, v 99.7 1.1E-16 3.7E-21 109.9 10.8 111 11-124 28-138 (570)
60 4b8c_D Glucose-repressible alc 99.7 1.9E-17 6.6E-22 116.9 6.8 117 2-125 215-331 (727)
61 3t6q_A CD180 antigen; protein- 99.7 1.5E-16 5E-21 110.1 10.8 118 2-125 27-144 (606)
62 2ell_A Acidic leucine-rich nuc 99.7 2.5E-16 8.6E-21 93.1 9.9 114 9-126 22-136 (168)
63 2ft3_A Biglycan; proteoglycan, 99.7 1.3E-16 4.3E-21 103.5 9.3 107 11-123 54-160 (332)
64 3oja_B Anopheles plasmodium-re 99.7 2E-16 6.8E-21 109.6 10.7 117 2-124 90-206 (597)
65 2z66_A Variable lymphocyte rec 99.7 2E-16 6.8E-21 101.4 9.6 121 2-124 141-262 (306)
66 2je0_A Acidic leucine-rich nuc 99.7 3.2E-16 1.1E-20 90.9 9.5 114 9-126 15-129 (149)
67 4ezg_A Putative uncharacterize 99.7 6.2E-16 2.1E-20 93.6 11.0 109 8-123 85-194 (197)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.5E-16 1.5E-20 107.1 11.3 114 2-124 46-160 (562)
69 1w8a_A SLIT protein; signaling 99.7 2.8E-16 9.5E-21 94.9 9.0 108 12-125 9-117 (192)
70 1a9n_A U2A', U2A'; complex (nu 99.7 1.3E-16 4.4E-21 95.1 7.4 112 8-124 39-154 (176)
71 4ezg_A Putative uncharacterize 99.7 7.4E-16 2.5E-20 93.3 10.7 113 7-126 62-175 (197)
72 2z81_A CD282 antigen, TOLL-lik 99.7 1.5E-16 5.3E-21 108.8 8.2 118 4-124 43-162 (549)
73 2ft3_A Biglycan; proteoglycan, 99.7 5.3E-16 1.8E-20 100.5 10.2 118 2-126 69-188 (332)
74 2z81_A CD282 antigen, TOLL-lik 99.7 2.6E-16 8.9E-21 107.7 8.8 119 2-126 20-140 (549)
75 4fcg_A Uncharacterized protein 99.7 3.5E-16 1.2E-20 101.4 8.9 118 2-126 96-222 (328)
76 2je0_A Acidic leucine-rich nuc 99.7 3.9E-16 1.3E-20 90.6 7.5 109 6-119 37-149 (149)
77 4ay9_X Follicle-stimulating ho 99.7 5.5E-16 1.9E-20 101.3 8.4 122 3-126 46-170 (350)
78 2r9u_A Variable lymphocyte rec 99.6 1.1E-15 3.8E-20 91.0 8.8 96 2-103 27-122 (174)
79 2z7x_B TOLL-like receptor 1, v 99.6 7.4E-16 2.5E-20 105.0 9.1 112 2-123 15-128 (520)
80 3g39_A Variable lymphocyte rec 99.6 1E-15 3.5E-20 90.8 8.5 94 2-101 24-117 (170)
81 1dce_A Protein (RAB geranylger 99.6 1.5E-15 5.2E-20 104.7 10.2 106 12-126 442-549 (567)
82 2ifg_A High affinity nerve gro 99.6 2.3E-15 7.8E-20 98.1 10.4 104 14-123 11-116 (347)
83 4eco_A Uncharacterized protein 99.6 2.6E-15 8.9E-20 104.8 11.3 121 2-127 448-583 (636)
84 4ay9_X Follicle-stimulating ho 99.6 8.8E-16 3E-20 100.3 8.2 121 3-127 96-219 (350)
85 1h6u_A Internalin H; cell adhe 99.6 3.9E-15 1.3E-19 95.8 11.1 37 85-123 150-186 (308)
86 3j0a_A TOLL-like receptor 5; m 99.6 1.8E-15 6.2E-20 108.4 10.4 113 11-126 266-378 (844)
87 3sb4_A Hypothetical leucine ri 99.6 2E-15 6.8E-20 97.8 9.6 104 9-117 224-328 (329)
88 3o53_A Protein LRIM1, AGAP0063 99.6 1.5E-15 5.2E-20 97.9 8.6 113 4-123 137-250 (317)
89 2z7x_B TOLL-like receptor 1, v 99.6 4.3E-15 1.5E-19 101.2 11.1 111 7-123 370-481 (520)
90 3o53_A Protein LRIM1, AGAP0063 99.6 2E-15 6.8E-20 97.4 8.9 112 9-126 118-230 (317)
91 1xeu_A Internalin C; cellular 99.6 6.4E-15 2.2E-19 92.9 10.8 107 7-125 59-165 (263)
92 1h6t_A Internalin B; cell adhe 99.6 8.9E-15 3.1E-19 93.4 11.4 62 8-76 65-126 (291)
93 1h6u_A Internalin H; cell adhe 99.6 5.9E-15 2E-19 94.9 10.2 108 7-125 103-210 (308)
94 1wwl_A Monocyte differentiatio 99.6 1.1E-15 3.7E-20 98.5 6.7 33 37-69 149-181 (312)
95 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 4.5E-15 1.5E-19 102.1 10.1 114 5-122 371-509 (562)
96 3j0a_A TOLL-like receptor 5; m 99.6 3.5E-15 1.2E-19 106.9 9.6 116 3-126 282-397 (844)
97 4fcg_A Uncharacterized protein 99.6 4.1E-15 1.4E-19 96.4 9.0 109 8-122 180-289 (328)
98 4ecn_A Leucine-rich repeat pro 99.6 1.1E-14 3.8E-19 104.5 11.9 121 2-127 688-823 (876)
99 1ogq_A PGIP-2, polygalacturona 99.6 5.8E-15 2E-19 95.1 9.6 89 7-99 97-187 (313)
100 4eco_A Uncharacterized protein 99.6 8.4E-15 2.9E-19 102.2 10.7 88 37-125 433-528 (636)
101 1h6t_A Internalin B; cell adhe 99.6 1.3E-14 4.4E-19 92.7 10.7 109 7-126 86-194 (291)
102 1ogq_A PGIP-2, polygalacturona 99.6 8.2E-15 2.8E-19 94.4 9.7 115 5-123 70-187 (313)
103 1wwl_A Monocyte differentiatio 99.6 3E-15 1E-19 96.4 7.3 113 11-126 149-269 (312)
104 4fmz_A Internalin; leucine ric 99.6 2.8E-14 9.5E-19 92.8 11.8 111 7-126 217-327 (347)
105 3oja_A Leucine-rich immune mol 99.6 6.9E-15 2.4E-19 99.9 9.2 110 11-126 120-230 (487)
106 1xeu_A Internalin C; cellular 99.6 1.4E-14 4.9E-19 91.3 10.0 108 7-126 81-188 (263)
107 3oja_A Leucine-rich immune mol 99.6 9.2E-15 3.2E-19 99.3 9.0 115 2-123 135-250 (487)
108 4fmz_A Internalin; leucine ric 99.6 2.1E-14 7.2E-19 93.4 10.2 109 7-124 239-347 (347)
109 3rgz_A Protein brassinosteroid 99.6 2.3E-14 8E-19 101.8 11.1 114 6-123 437-551 (768)
110 4glp_A Monocyte differentiatio 99.6 2.8E-15 9.6E-20 96.4 5.9 115 8-126 142-267 (310)
111 4glp_A Monocyte differentiatio 99.6 1E-15 3.4E-20 98.5 3.6 120 2-126 160-288 (310)
112 1m9s_A Internalin B; cell inva 99.6 3E-14 1E-18 99.0 10.9 40 8-51 62-101 (605)
113 2ifg_A High affinity nerve gro 99.6 2.1E-14 7.1E-19 93.5 9.1 92 2-99 24-116 (347)
114 3rgz_A Protein brassinosteroid 99.6 3.8E-14 1.3E-18 100.7 10.4 115 5-123 412-527 (768)
115 1m9s_A Internalin B; cell inva 99.5 4.8E-14 1.6E-18 98.0 10.6 109 7-126 83-191 (605)
116 4ecn_A Leucine-rich repeat pro 99.5 3.2E-14 1.1E-18 102.2 9.0 117 7-126 444-589 (876)
117 1ds9_A Outer arm dynein; leuci 99.5 1.5E-16 5.1E-21 96.4 -2.9 111 6-124 43-154 (198)
118 1dce_A Protein (RAB geranylger 99.5 1.1E-13 3.6E-18 95.6 9.6 108 2-117 456-567 (567)
119 3bz5_A Internalin-J, INLJ; leu 99.5 1.9E-13 6.4E-18 92.3 9.0 105 7-125 38-142 (457)
120 4fdw_A Leucine rich hypothetic 99.5 3.3E-13 1.1E-17 89.7 9.7 95 27-125 261-360 (401)
121 1o6v_A Internalin A; bacterial 99.5 5E-13 1.7E-17 90.2 10.7 83 35-124 285-367 (466)
122 4b8c_D Glucose-repressible alc 99.5 8.1E-14 2.8E-18 98.6 6.8 96 28-127 215-310 (727)
123 1o6v_A Internalin A; bacterial 99.5 7.2E-13 2.5E-17 89.4 10.9 107 7-124 239-345 (466)
124 3cvr_A Invasion plasmid antige 99.5 7.8E-13 2.7E-17 91.4 10.6 76 38-126 121-196 (571)
125 4fdw_A Leucine rich hypothetic 99.5 4E-13 1.4E-17 89.3 8.7 116 2-125 217-337 (401)
126 3cvr_A Invasion plasmid antige 99.4 7.1E-13 2.4E-17 91.6 9.6 99 10-124 139-244 (571)
127 3bz5_A Internalin-J, INLJ; leu 99.4 3E-12 1E-16 86.4 11.0 100 6-120 59-158 (457)
128 3goz_A Leucine-rich repeat-con 99.4 5.7E-13 2E-17 87.3 6.6 110 11-123 22-151 (362)
129 1jl5_A Outer protein YOPM; leu 99.4 3.4E-12 1.2E-16 86.1 10.0 105 7-126 149-253 (454)
130 3g06_A SSPH2 (leucine-rich rep 99.4 4.5E-12 1.5E-16 88.4 10.4 76 11-101 61-136 (622)
131 4gt6_A Cell surface protein; l 99.4 1.2E-11 4.1E-16 81.9 10.8 113 2-121 256-368 (394)
132 4h09_A Hypothetical leucine ri 99.3 1.6E-11 5.5E-16 80.8 10.1 113 2-120 231-343 (379)
133 3goz_A Leucine-rich repeat-con 99.3 2E-12 7E-17 84.7 5.6 117 5-124 44-181 (362)
134 2ca6_A RAN GTPase-activating p 99.3 2.2E-12 7.5E-17 85.1 4.6 118 6-125 182-318 (386)
135 3g06_A SSPH2 (leucine-rich rep 99.3 5.2E-11 1.8E-15 83.1 10.7 98 11-126 40-137 (622)
136 1jl5_A Outer protein YOPM; leu 99.3 4.5E-11 1.5E-15 80.6 9.7 81 37-126 131-211 (454)
137 1ds9_A Outer arm dynein; leuci 99.2 3.4E-14 1.2E-18 86.0 -5.9 109 10-125 17-130 (198)
138 2ast_B S-phase kinase-associat 99.2 1.4E-11 4.8E-16 79.7 4.0 38 8-47 115-152 (336)
139 2ca6_A RAN GTPase-activating p 99.2 1.5E-11 5.2E-16 81.1 3.5 16 8-23 91-106 (386)
140 4h09_A Hypothetical leucine ri 99.1 1.5E-10 5.1E-15 76.2 7.6 104 2-111 254-357 (379)
141 2ast_B S-phase kinase-associat 99.1 4.3E-11 1.5E-15 77.4 4.9 110 9-121 91-206 (336)
142 4gt6_A Cell surface protein; l 99.1 2E-10 7E-15 76.1 8.1 112 2-122 279-390 (394)
143 1z7x_W Ribonuclease inhibitor; 99.1 8.7E-11 3E-15 78.9 5.7 113 7-122 52-182 (461)
144 4fs7_A Uncharacterized protein 99.1 3.2E-10 1.1E-14 75.1 8.1 89 28-120 288-376 (394)
145 4fs7_A Uncharacterized protein 99.1 3.2E-10 1.1E-14 75.1 7.8 106 2-115 288-393 (394)
146 1z7x_W Ribonuclease inhibitor; 99.1 2.2E-11 7.6E-16 81.8 1.7 64 59-124 339-412 (461)
147 3un9_A NLR family member X1; l 99.0 1.1E-10 3.9E-15 76.9 3.2 111 11-124 126-253 (372)
148 3un9_A NLR family member X1; l 98.9 3E-10 1E-14 74.9 2.8 111 11-124 101-225 (372)
149 1io0_A Tropomodulin; LRR prote 98.7 1.1E-08 3.9E-13 61.2 3.3 117 5-123 30-164 (185)
150 3ogk_B Coronatine-insensitive 98.5 1.9E-07 6.6E-12 64.5 5.5 90 34-124 433-527 (592)
151 3ogk_B Coronatine-insensitive 98.5 9.4E-08 3.2E-12 66.0 3.5 65 9-76 162-234 (592)
152 2p1m_B Transport inhibitor res 98.4 1.9E-07 6.6E-12 64.5 4.6 88 34-123 429-519 (594)
153 2p1m_B Transport inhibitor res 98.4 2.9E-07 1E-11 63.6 4.1 12 109-120 210-221 (594)
154 3rw6_A Nuclear RNA export fact 98.4 5.8E-07 2E-11 56.8 4.9 80 35-116 168-257 (267)
155 3rw6_A Nuclear RNA export fact 98.3 3.4E-07 1.2E-11 57.8 3.6 81 8-92 167-257 (267)
156 2ra8_A Uncharacterized protein 98.2 1.1E-05 3.7E-10 53.2 8.3 40 6-50 167-206 (362)
157 3e4g_A ATP synthase subunit S, 98.2 4.4E-06 1.5E-10 49.6 5.8 82 38-120 62-149 (176)
158 3e4g_A ATP synthase subunit S, 98.2 6.9E-06 2.4E-10 48.7 6.3 88 11-101 61-155 (176)
159 3rfe_A Platelet glycoprotein I 98.0 9.8E-06 3.3E-10 45.7 5.0 56 40-99 11-68 (130)
160 2ra8_A Uncharacterized protein 98.0 1.2E-05 4E-10 53.0 6.0 113 10-124 192-321 (362)
161 1io0_A Tropomodulin; LRR prote 98.0 1.1E-05 3.7E-10 48.1 4.7 92 32-124 31-137 (185)
162 3rfe_A Platelet glycoprotein I 98.0 2.3E-05 8E-10 44.2 5.5 58 14-75 11-68 (130)
163 2lz0_A Uncharacterized protein 97.3 0.0006 2E-08 36.6 5.1 42 27-69 10-51 (100)
164 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0042 1.4E-07 37.5 6.1 113 6-122 36-169 (197)
165 2lz0_A Uncharacterized protein 96.7 0.0058 2E-07 32.7 5.5 47 1-50 10-56 (100)
166 1pgv_A TMD-1, tropomodulin TMD 95.6 0.016 5.6E-07 34.9 4.0 87 33-120 37-136 (197)
No 1
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.7e-21 Score=120.53 Aligned_cols=122 Identities=31% Similarity=0.527 Sum_probs=87.5
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+++..|..+++|+.|++++|.+. .+++..|..++.|++|++++|+++.+++..|..+++|+.|+++ +|.+..+++..
T Consensus 50 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~ 126 (251)
T 3m19_A 50 LSDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG-GNQLKSLPSGV 126 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred cCHhHhcCcccCCEEECCCCcCC--ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC-CCcCCCcChhH
Confidence 44556677777777777777765 6666666777777777777777777776666777777777777 77777777666
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
|..+++|+.+++++|.++.++...|+.+++|+.|++++|.++.++
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 666777777777777777776655667777777777777776654
No 2
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=2.1e-21 Score=119.68 Aligned_cols=117 Identities=31% Similarity=0.463 Sum_probs=72.2
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
+++.|..+++|+.|++++|++. .+++..|..++.|++|++++|.++.++...|..+++|+.|+++ +|.+..+++..|
T Consensus 48 ~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N~l~~~~~~~~ 124 (220)
T 2v9t_B 48 PPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN-ANKINCLRVDAF 124 (220)
T ss_dssp CTTSSTTCTTCCEEECCSSCCC--EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTT
T ss_pred CHhHhhCCCCCCEEECCCCcCC--CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC-CCCCCEeCHHHc
Confidence 4445566666666666666654 5555555666666666666666666666555666666666666 666666655555
Q ss_pred ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i 122 (127)
..+++|+.+++++|.++.++...|..+++|+.+++++|++
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5566666666666666666655555666666666666654
No 3
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1e-20 Score=119.63 Aligned_cols=121 Identities=36% Similarity=0.558 Sum_probs=58.2
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
++++|..+++|+.|++++|.+. .+++..|..+++|++|++++|.++.+++..|..+++|+.|+++ +|.+..++...|
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~ 153 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQ--ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG-YNELQSLPKGVF 153 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCC--CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTT
T ss_pred ChhhhcCCCCCCEEECCCCcCC--cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC-CCcCCccCHhHc
Confidence 3344444444444444444433 4444444444444444444444444444444444455555555 444444444444
Q ss_pred ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
..+++|+.+++++|.++.++...|..+++|+.+++++|.++.+|
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 44455555555555555554444445555555555555554443
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.5e-20 Score=118.92 Aligned_cols=122 Identities=31% Similarity=0.544 Sum_probs=107.5
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+++..|..+++|+.|++++|.+. .+++..|..++.|++|++++|.++.++...|..+++|+.++++ +|.+..+++..
T Consensus 52 ~~~~~~~~l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~ 128 (270)
T 2o6q_A 52 LPSKAFHRLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRV 128 (270)
T ss_dssp CCTTSSSSCTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC-SSCCCCCCTTT
T ss_pred eCHHHhcCCCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC-CCccCeeCHHH
Confidence 56677888999999999999876 8888888889999999999999998888778888999999999 99999888887
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
|..+++|+.+++++|.++.++...|..+++|+.|++++|.++.++
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 888899999999999999888887888899999999999888765
No 5
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=1.4e-20 Score=116.03 Aligned_cols=113 Identities=29% Similarity=0.456 Sum_probs=105.9
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~ 90 (127)
..++.|++++|.+. .+++..|..++.|+.|++++|+++.+.+..|..+++|+.|+++ +|.++.+++..|.++++|+.
T Consensus 32 ~~l~~L~l~~n~i~--~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIK--VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-GNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCC--EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCC--CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC-CCcCCccCHhHccCCCCCCE
Confidence 57999999999987 8999889999999999999999999988889999999999999 99999999998899999999
Q ss_pred EEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+++++|.++.++...|..+++|+.|++++|.++.++
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 999999999998877899999999999999998876
No 6
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.2e-20 Score=114.00 Aligned_cols=119 Identities=29% Similarity=0.523 Sum_probs=89.3
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+++.+|..+++|+.|++++|++. .+++..|..++.|+++++++|+++.+++..|..+++|+.++++ +|.+..+++..
T Consensus 43 ~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~ 119 (208)
T 2o6s_A 43 LPNGVFDELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGV 119 (208)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred CChhhhcccccCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC-CCcCcccCHhH
Confidence 45666777777888888877765 7777777777778888888777777776666777778888887 77777777766
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
|..+++|+.+++++|.++.++...|..+++|+.+++++|++.
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 667777788888877777777766677777888888777654
No 7
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=115.74 Aligned_cols=118 Identities=20% Similarity=0.378 Sum_probs=97.2
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
+.++|..+++|+.|++++|.+. .+++..|..++.|++|++++|.++.+++..|..+++|+.|+++ +|.+..+++..|
T Consensus 49 ~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~ 125 (220)
T 2v70_A 49 ATGIFKKLPQLRKINFSNNKIT--DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR-SNRITCVGNDSF 125 (220)
T ss_dssp CCCCGGGCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT-TSCCCCBCTTSS
T ss_pred chhhhccCCCCCEEECCCCcCC--EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC-CCcCCeECHhHc
Confidence 3456778888888888888876 7887778888888888888888888888778888888888888 888888877777
Q ss_pred ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
..+++|+.+++++|.++.++...|..+++|+.+++++|++.
T Consensus 126 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 78888888888888888886666788888888888888764
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=2.7e-20 Score=116.61 Aligned_cols=120 Identities=28% Similarity=0.509 Sum_probs=111.6
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
++++.|..+++|+.|++++|.+. .+++..|..+++|++|++++|+++.+++..|..+++|+.|+++ +|.+..+++..
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~ 150 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQLA--SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGA 150 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred cCHhHhccCCcCCEEECCCCccc--ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc-CCcCCccCHHH
Confidence 56778899999999999999987 8999999999999999999999999998888899999999999 99999999888
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
|..+++|+.+++++|.++.++...|..+++|+.+++++|++..
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 8889999999999999999998778899999999999998864
No 9
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1.9e-20 Score=122.74 Aligned_cols=122 Identities=21% Similarity=0.344 Sum_probs=102.2
Q ss_pred Cchhhhc-CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031 2 FPKDLFA-EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80 (127)
Q Consensus 2 i~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~ 80 (127)
+++..|. .+++|+.|++++|++. .+++..|..++.|++|++++|+++.+++..|..+++|+.|+++ +|.+..+++.
T Consensus 54 l~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~ 130 (361)
T 2xot_A 54 LRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY-NNHIVVVDRN 130 (361)
T ss_dssp ECTTSSSSCCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTT
T ss_pred cChhhhhhcccccCEEECCCCcCC--ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC-CCcccEECHH
Confidence 3556666 7888999999999876 8888888888999999999999988888778888899999999 8988888877
Q ss_pred hhccCCCCcEEEecCccccccChhhh---cCCccccEEeccCCcccccC
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPENLF---ESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~~~---~~~~~l~~l~l~~n~i~~~~ 126 (127)
.|..+++|+.|++++|.++.+|...| ..+++|+.|++++|.++.+|
T Consensus 131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 78888899999999999988888776 45788999999999888765
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.3e-20 Score=130.24 Aligned_cols=121 Identities=24% Similarity=0.358 Sum_probs=70.5
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
||++.|.++++|+.|++++|++. .+++++|..+++|++|++++|+++.+++.+|.++++|+.|+++ +|.++.+++..
T Consensus 67 l~~~~f~~l~~L~~L~Ls~N~i~--~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls-~N~l~~l~~~~ 143 (635)
T 4g8a_A 67 LGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFP 143 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT-TSCCCCSTTCC
T ss_pred CCHHHHhCCCCCCEEECCCCcCC--CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC-CCcCCCCChhh
Confidence 34555666666666666666554 5666556666666666666666666665556666666666666 66666665555
Q ss_pred hccCCCCcEEEecCccccccC-hhhhcCCccccEEeccCCccccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~-~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
|..+++|+.+++++|.++.++ ...++.+++|+.+++++|.++.+
T Consensus 144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 555666666666666555332 12235556666666666655543
No 11
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=4.8e-20 Score=114.18 Aligned_cols=117 Identities=26% Similarity=0.454 Sum_probs=76.1
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
++..|..+++|+.|++++|++. .+++..|..++.|+.|++++|+++.+++..|..+++|+.|+++ +|.+..+|...
T Consensus 56 ~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~lp~~~- 131 (229)
T 3e6j_A 56 EPGVFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGI- 131 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCSCCTTG-
T ss_pred CHHHhhCccCCcEEECCCCCCC--CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc-CCcccccCccc-
Confidence 4455666666666666666654 6666666666666666666666666666656666666666666 66666665543
Q ss_pred ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
..+++|+.+++++|.++.++...|..+++|+.+++++|++.
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55666667777766666666655566666777777666554
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.3e-20 Score=129.06 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=105.9
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~ 90 (127)
+.++.|++++|.+. .+++..|..++.|++|++++|+++.+++.+|..+++|+.|+++ +|.++.+++.+|.++++|+.
T Consensus 52 ~~~~~LdLs~N~i~--~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls-~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCC--CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc-CCcCCCCCHHHhcCCCCCCE
Confidence 46899999999987 9999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
+++++|.++.++...|+++++|+.|++++|.++.+
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence 99999999999988789999999999999998764
No 13
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=6.1e-20 Score=113.72 Aligned_cols=118 Identities=31% Similarity=0.461 Sum_probs=107.2
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
||.++ .++++.|++++|.+. .+++..|..++.|+.|++++|+++.++...|..+++|+.|+++ +|.++.+++..
T Consensus 34 ip~~~---~~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~ 107 (229)
T 3e6j_A 34 VPAGI---PTNAQILYLHDNQIT--KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG-TNQLTVLPSAV 107 (229)
T ss_dssp CCSCC---CTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred cCCCC---CCCCCEEEcCCCccC--ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC-CCcCCccChhH
Confidence 45544 367999999999987 8888888999999999999999999998888999999999999 99999999988
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
|..+++|+.+++++|.++.+|..+ ..+++|+.|++++|.++.++
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCC
T ss_pred hCcchhhCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccC
Confidence 888999999999999999998874 78999999999999998876
No 14
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.4e-19 Score=110.50 Aligned_cols=114 Identities=30% Similarity=0.530 Sum_probs=105.6
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~ 89 (127)
.++++.|++++|++. .+++..|..++.|+++++++|+++.+++..|..+++|+.++++ +|.++.+++..|..+++|+
T Consensus 27 ~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCCCccC--cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC-CCcCCccCHhHhcCccCCC
Confidence 457999999999987 8998888999999999999999999998888899999999999 9999999988888899999
Q ss_pred EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.+++++|.++.++...|..+++|+.+++++|.++.++
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 9999999999999887889999999999999998776
No 15
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=109.96 Aligned_cols=115 Identities=24% Similarity=0.386 Sum_probs=103.1
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
||.+++ ..++.|++++|.+. .+| ..|..++.|+.|++++|+++.+++..|..+++|+.|+++ +|.++.+++..
T Consensus 25 ip~~~~---~~l~~L~L~~n~i~--~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~ 97 (193)
T 2wfh_A 25 LPKGIP---RDVTELYLDGNQFT--LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS-YNRLRCIPPRT 97 (193)
T ss_dssp CCSCCC---TTCCEEECCSSCCC--SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTT
T ss_pred CCCCCC---CCCCEEECCCCcCc--hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC-CCccCEeCHHH
Confidence 555553 47899999999986 888 467899999999999999999998889999999999999 99999999888
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
|.++++|+.+++++|.++.++...|..+++|+.+++++|++.
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 899999999999999999999988889999999999999764
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=2.3e-19 Score=113.59 Aligned_cols=116 Identities=28% Similarity=0.494 Sum_probs=54.7
Q ss_pred hhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhc
Q psy8031 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83 (127)
Q Consensus 4 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~ 83 (127)
+..|..+++|+.|++++|++. .+++..|..++.|+++++++|.++.+++..|..+++|+.++++ +|.++.+++..|.
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQ--SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPEGVFD 178 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTT
T ss_pred hhHhcCCcCCCEEECCCCcCC--ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC-CCCcCccCHHHhc
Confidence 334444444444444444433 4444444444444444444444444444444444445555554 4444444444444
Q ss_pred cCCCCcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122 (127)
Q Consensus 84 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i 122 (127)
.+++|+.+++++|.++.++...|..+++|+.+++++|++
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 444455555555544444444444444555555554443
No 17
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.82 E-value=2.5e-19 Score=106.87 Aligned_cols=112 Identities=29% Similarity=0.487 Sum_probs=102.9
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~ 89 (127)
.+.++.|++++|++. .+++..|..++.|+++++++|+++.+++..|..+++|+.++++ +|.++.+++..|..+++|+
T Consensus 27 ~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 27 PSSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH-ENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEeCCCccc--EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC-CCCccccCHHHhhCCcccC
Confidence 367999999999976 8898888999999999999999999998888899999999999 9999999988888899999
Q ss_pred EEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
.+++++|.++.++...|..+++|+.+++++|++..
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999999999999888889999999999998764
No 18
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=6.9e-20 Score=113.95 Aligned_cols=120 Identities=20% Similarity=0.282 Sum_probs=76.6
Q ss_pred CchhhhcCCccceEEEecCCc-CcccccCccccCCCCCCcEEEecC-CcccccChhhhcCCCCCcEEEecCCCCCeeecc
Q psy8031 2 FPKDLFAEMKYLQVIKISYHK-DSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 79 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~ 79 (127)
++++.|.++++|+.|++++|. +. .+++..|..+++|+++++++ |+++.+++..|..+++|+.++++ +|.++.++.
T Consensus 46 i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~-~n~l~~lp~ 122 (239)
T 2xwt_C 46 IPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF-NTGLKMFPD 122 (239)
T ss_dssp ECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE-EECCCSCCC
T ss_pred ECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC-CCCCccccc
Confidence 455566777777777777775 54 66666667777777777776 77777766666666777777776 666655554
Q ss_pred hhhccCCCCc---EEEecCc-cccccChhhhcCCcccc-EEeccCCcccccC
Q psy8031 80 TLFRDCKKLV---KLELQRN-KLKYLPENLFESLKELY-TLNLKNNQLENIT 126 (127)
Q Consensus 80 ~~~~~~~~l~---~l~l~~n-~~~~~~~~~~~~~~~l~-~l~l~~n~i~~~~ 126 (127)
|..+++++ .+++++| .++.++...|..+++|+ .+++++|.++.+|
T Consensus 123 --~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 123 --LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp --CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred --cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 44445554 5666665 56655555555566666 6666666655544
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=3.9e-19 Score=112.55 Aligned_cols=118 Identities=33% Similarity=0.566 Sum_probs=95.4
Q ss_pred hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 85 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~ 85 (127)
.+..+++|+.|++++|.+. .+++..|..++.|+++++++|+++.+++..|..+++|+.++++ +|.+..+++..|..+
T Consensus 80 ~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l 156 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQ--SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA-HNQLQSLPKGVFDKL 156 (272)
T ss_dssp GGTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTC
T ss_pred hhcCCCCCCEEECCCCccC--ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC-CCccCccCHHHhccC
Confidence 4567788888888888766 7777777888888888888888888877777778888888888 888888877777778
Q ss_pred CCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 86 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
++|+.+++++|.++.++...|+.+++|+.+++++|.++.++
T Consensus 157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 88888888888888887776778888888888888887765
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=4.2e-19 Score=112.90 Aligned_cols=117 Identities=28% Similarity=0.456 Sum_probs=53.1
Q ss_pred hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhcc
Q psy8031 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84 (127)
Q Consensus 5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~ 84 (127)
..|..+++|+.|++++|.+. .+++..|..+++|+++++++|.++.++...|..+++|+.++++ +|.+..++...|..
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH-GNRISSVPERAFRG 175 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCEECTTTTTT
T ss_pred HHhcCCcCCCEEECCCCcCC--EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC-CCcccccCHHHhcC
Confidence 33444444444444444433 3433444444444444444444444444434444444444444 44444444443444
Q ss_pred CCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 85 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
+++|+.+++++|.++.+....|..+++|+.+++++|.++.
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 4444444444444444433333444444444444444443
No 21
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=109.61 Aligned_cols=113 Identities=21% Similarity=0.462 Sum_probs=102.5
Q ss_pred ccceEEEecCCcCccccc-CccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031 11 KYLQVIKISYHKDSLKEL-PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~-~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~ 89 (127)
..++.|++++|.+. .+ +...|..++.|+.|++++|+++.+++..|..+++|+.|+++ +|.+..+++..|.++++|+
T Consensus 32 ~~~~~L~L~~N~l~--~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNNEFT--VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLENVQHKMFKGLESLK 108 (220)
T ss_dssp TTCSEEECCSSCCC--EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCGGGGTTCSSCC
T ss_pred CCCCEEEcCCCcCC--ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC-CCccCccCHhHhcCCcCCC
Confidence 34689999999986 66 45678899999999999999999998889999999999999 9999999998889999999
Q ss_pred EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.+++++|.++.++...|..+++|+.|++++|.++.++
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 9999999999997777889999999999999998873
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=4.6e-19 Score=112.75 Aligned_cols=118 Identities=24% Similarity=0.361 Sum_probs=55.4
Q ss_pred hhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCc-ccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS-IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 4 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
+..|..+++|+.|++++|.+. .+++..|..++.|+++++++|. ++.+++..|..+++|+.++++ +|.+..+++..|
T Consensus 49 ~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~ 125 (285)
T 1ozn_A 49 AASFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLF 125 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTT
T ss_pred HHHcccCCCCCEEECCCCccc--eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC-CCcCCEECHhHh
Confidence 344455555555555555443 4444444445555555555553 444444344444445555554 444444444334
Q ss_pred ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
..+++|+.+++++|.++.++...|+.+++|+.+++++|.+++
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 444444444444444444444333444444444444444443
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=6.7e-19 Score=112.49 Aligned_cols=113 Identities=29% Similarity=0.414 Sum_probs=74.2
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~ 89 (127)
+++|+.|++++|++. .+|. .+..++.|++|++++|+++.+++..|..+++|+.|+++ +|.+..+++..|..+++|+
T Consensus 76 l~~L~~L~Ls~N~l~--~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ--SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CTTCCEEECCSSCCS--SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCC
T ss_pred CCcCCEEECCCCcCC--cCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC-CCCCCccChhhcccccCCC
Confidence 334444444444433 4443 23556667777777777777666666677777777777 7777777766666667777
Q ss_pred EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.+++++|.++.++..+|..+++|+.+++++|.++.+|
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence 7777777777777766666777777777777777665
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=3.4e-19 Score=117.71 Aligned_cols=121 Identities=25% Similarity=0.466 Sum_probs=105.8
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+|+.+|..+++|+.|++++|.+. .+++..|..++.|++|++++|.++.+++..|..+++|+.++++ +|.+..++...
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~ 136 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE-RNDLSSLPRGI 136 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred CChhHhcccccCcEEECCCCccc--ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC-CCccCcCCHHH
Confidence 57778888999999999999876 8888788899999999999999998888778888999999999 99999888887
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
|..+++|+.+++++|.++.++...|..+++|+.|++++|.++.+
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 78888999999999999888777778889999999999988765
No 25
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=5.4e-19 Score=106.80 Aligned_cols=116 Identities=22% Similarity=0.392 Sum_probs=102.0
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCcc-ccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~ 80 (127)
||..++. .++.|++++|.+. .+++. .|..++.|++|++++|+++.+.+..|..+++|+.++++ +|.+..+++.
T Consensus 23 ip~~~~~---~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~ 96 (192)
T 1w8a_A 23 IPRDIPL---HTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-ENKIKEISNK 96 (192)
T ss_dssp CCSCCCT---TCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SCCCCEECSS
T ss_pred CccCCCC---CCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC-CCcCCccCHH
Confidence 5554433 7899999999976 77764 57899999999999999999988789999999999999 9999999988
Q ss_pred hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
.|.++++|+.+++++|.++.++...|..+++|+.+++++|+++
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8888999999999999999887766788999999999999876
No 26
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=6.7e-19 Score=115.47 Aligned_cols=119 Identities=25% Similarity=0.376 Sum_probs=107.8
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccC-CCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA-NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~ 80 (127)
||..+. ..++.|++++|.+. .+++..|. .+++|+.|++++|+++.+++..|..+++|+.|+++ +|.+..+++.
T Consensus 33 iP~~~~---~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~ 106 (361)
T 2xot_A 33 VPQSLP---SYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-SNHLHTLDEF 106 (361)
T ss_dssp CCSSCC---TTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTT
T ss_pred cCccCC---CCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC-CCcCCcCCHH
Confidence 455442 34889999999987 89988887 89999999999999999998889999999999999 9999999998
Q ss_pred hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.|..+.+|+.|++++|.++.++...|..+++|+.|++++|.++.+|
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 8999999999999999999998877899999999999999999876
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=7.9e-19 Score=117.66 Aligned_cols=121 Identities=26% Similarity=0.452 Sum_probs=82.2
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
++..|.++++|+.|++++|.+. .+++..|.++++|++|++++|+++.++...|..+++|+.|+++ +|.+..++...|
T Consensus 80 ~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~ 156 (440)
T 3zyj_A 80 KVNSFKHLRHLEILQLSRNHIR--TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR-NNPIESIPSYAF 156 (440)
T ss_dssp CTTTTSSCSSCCEEECCSSCCC--EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC-SCCCCEECTTTT
T ss_pred CHHHhhCCCCCCEEECCCCcCC--ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC-CCcccccCHHHh
Confidence 4556677777777777777765 6676677777777777777777777776667777777777777 777777766666
Q ss_pred ccCCCCcEEEecC-ccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 83 RDCKKLVKLELQR-NKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 83 ~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
..+++|+.+++++ +.+..++...|.++++|+.|++++|.++.+|
T Consensus 157 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 6666666666665 3455666555566666666666666665554
No 28
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=4.7e-19 Score=110.21 Aligned_cols=120 Identities=19% Similarity=0.308 Sum_probs=73.4
Q ss_pred chhhhcCCccceEEEecC-CcCcccccCccccCCCCCCcE-------------------------EEecCC-cccccChh
Q psy8031 3 PKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNT-------------------------VILGES-SIAELPSD 55 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~l~~-------------------------l~l~~n-~~~~~~~~ 55 (127)
++++|.++++|+.|++++ |.+. .+++..|..+++|++ +++++| .++.+++.
T Consensus 72 ~~~~f~~l~~L~~L~l~~~n~l~--~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~ 149 (239)
T 2xwt_C 72 ESHSFYNLSKVTHIEIRNTRNLT--YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149 (239)
T ss_dssp CTTTEESCTTCCEEEEEEETTCC--EECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred CHhHcCCCcCCcEEECCCCCCee--EcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcc
Confidence 344455555555555555 5443 455444445555554 455555 55555555
Q ss_pred hhcCCCCCc-EEEecCCCCCeeecchhhccCCCCcEEEecCcc-ccccChhhhcCC-ccccEEeccCCcccccC
Q psy8031 56 LFWNSTNIT-NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK-LKYLPENLFESL-KELYTLNLKNNQLENIT 126 (127)
Q Consensus 56 ~~~~~~~l~-~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~~~-~~l~~l~l~~n~i~~~~ 126 (127)
.|..+++++ .++++ +|.++.++...|.. .+|+.+++++|. ++.++...|..+ ++|+.+++++|+++.+|
T Consensus 150 ~~~~l~~L~~~L~l~-~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 150 AFQGLCNETLTLKLY-NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TTTTTBSSEEEEECC-SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred cccchhcceeEEEcC-CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 566666677 77777 66666666666554 567777777773 777766666666 77777777777777665
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1e-18 Score=117.45 Aligned_cols=121 Identities=27% Similarity=0.452 Sum_probs=86.6
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
++..|.++++|+.|++++|.+. .+++..|.++++|++|++++|.++.+++..|..+++|+.|+++ +|.+..++...|
T Consensus 91 ~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~ 167 (452)
T 3zyi_A 91 QADTFRHLHHLEVLQLGRNSIR--QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAF 167 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC-SCCCCEECTTTT
T ss_pred CHHHcCCCCCCCEEECCCCccC--CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC-CCCcceeCHhHH
Confidence 4566777777788888777765 6776777777777777777777777777767777777777777 777777777666
Q ss_pred ccCCCCcEEEecC-ccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 83 RDCKKLVKLELQR-NKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 83 ~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
..+++|+.+++++ +.+..++...|..+++|+.|++++|.++.+|
T Consensus 168 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 6667777777766 4566666655666666777777766666554
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1e-18 Score=111.69 Aligned_cols=119 Identities=27% Similarity=0.365 Sum_probs=103.0
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+++..|..+++|+.|++++|.+. .++.. ..++.|++|++++|+++.++.. +..+++|+.|+++ +|.++.+++..
T Consensus 46 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~-~N~l~~l~~~~ 119 (290)
T 1p9a_G 46 FSLATLMPYTRLTQLNLDRAELT--KLQVD--GTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVS-FNRLTSLPLGA 119 (290)
T ss_dssp EEGGGGTTCTTCCEEECTTSCCC--EEECC--SCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECC-SSCCCCCCSST
T ss_pred cCHHHhhcCCCCCEEECCCCccC--cccCC--CCCCcCCEEECCCCcCCcCchh-hccCCCCCEEECC-CCcCcccCHHH
Confidence 34567788888888888888876 66653 6788899999999999888764 6778999999999 99999999888
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
|.++++|+.+++++|.++.++..+|..+++|+.|++++|.++++|
T Consensus 120 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred HcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 888999999999999999999988889999999999999998876
No 31
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=1e-18 Score=110.64 Aligned_cols=120 Identities=27% Similarity=0.383 Sum_probs=87.9
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
++..|..+++|+.|++++|++. .+++..|..++.|+++++++|.++.+++..|..+++|+.++++ +|.+..++...+
T Consensus 44 ~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~ 120 (276)
T 2z62_A 44 GSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFPI 120 (276)
T ss_dssp CTTTTTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TSCCCCSTTCCC
T ss_pred CHhHhccccCCcEEECCCCcCC--ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC-CCCccccCchhc
Confidence 4456677777888888888765 7777677777788888888887777776667777778888887 777777766556
Q ss_pred ccCCCCcEEEecCccccc--cChhhhcCCccccEEeccCCcccccC
Q psy8031 83 RDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
..+++|+.+++++|.++. +|.. +..+++|+.+++++|.++.++
T Consensus 121 ~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC
T ss_pred ccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCC
Confidence 667778888888887775 3444 567777888888887776653
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=9.6e-19 Score=121.12 Aligned_cols=122 Identities=25% Similarity=0.463 Sum_probs=107.5
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+|+.+|..+++|+.|++++|.+. .+++..|..++.|++|++++|.++.+++..|+.+++|+.|+++ +|.+..+++..
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~ 142 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE-RNDLSSLPRGI 142 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred cCHHHHccCCCCcEEECCCCCCC--CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee-CCCCCCCCHHH
Confidence 57788888999999999999876 8888788999999999999999999888888889999999999 99999998888
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
|..+++|+.+++++|.++.++...|+.+++|+.|++++|.++.++
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 888899999999999998888777788899999999999887653
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=1.9e-18 Score=115.87 Aligned_cols=119 Identities=21% Similarity=0.348 Sum_probs=101.8
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
++..|..+++|+.|++++|.+. .+++..|..++.|++|++++|.++.+++..|..+++|+.++++ +|.+..+++..|
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~ 367 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEIN--KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS-YNHIRALGDQSF 367 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC-SSCCCEECTTTT
T ss_pred chhhcccCCCCCEEECCCCccc--ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC-CCcccccChhhc
Confidence 3556788889999999999876 7777777888999999999999988887778888999999999 999988877777
Q ss_pred ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
..+++|+.+++++|.++.++...|..+++|+.+++++|+++.
T Consensus 368 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 888899999999999998888777888899999999998764
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=117.35 Aligned_cols=117 Identities=27% Similarity=0.408 Sum_probs=56.2
Q ss_pred hhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhc
Q psy8031 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83 (127)
Q Consensus 4 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~ 83 (127)
+..|..+++|+.|++++|.+. .+++..|..+++|++|++++|.++.++...|..+++|+.|+++ +|.+..+++..|.
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~ 125 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS-ENKIVILLDYMFQ 125 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT-TSCCCEECTTTTT
T ss_pred HhHccCCCCCCEEECCCCccC--EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC-CCccccCChhHcc
Confidence 344555555555555555543 4444444555555555555555555554444445555555555 5544444444444
Q ss_pred cCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 84 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
.+++|+.+++++|.+..++...|..+++|+.|++++|.++
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 4444444444444444443333344444444444444443
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=4.5e-18 Score=114.82 Aligned_cols=122 Identities=20% Similarity=0.344 Sum_probs=109.3
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
++++.|.++++|+.|++++|.+. .+++..|..+++|++|++++|.++.+.+..|..+++|+.|+++ +|.+..+++..
T Consensus 71 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~ 147 (477)
T 2id5_A 71 VEPGAFNNLFNLRTLGLRSNRLK--LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG-DNDLVYISHRA 147 (477)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCC--SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC-CTTCCEECTTS
T ss_pred eChhhhhCCccCCEEECCCCcCC--ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC-CCccceeChhh
Confidence 35678899999999999999976 8999888999999999999999998888788899999999999 99999998888
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
|.++++|+.+++++|.++.++...|..+++|+.+++++|.+..++
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 888999999999999999999887888999999999998877654
No 36
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.77 E-value=4.8e-18 Score=100.85 Aligned_cols=107 Identities=27% Similarity=0.405 Sum_probs=96.2
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~ 90 (127)
+..+.++++++++. .+|..+ .+.++.|++++|+++.+++..|..+++|+.|+++ +|.++.+++..|..+++|+.
T Consensus 9 C~~~~l~~s~n~l~--~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 9 CSGTTVDCSGKSLA--SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp EETTEEECTTSCCS--SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEEeCCCCcC--ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCE
Confidence 35678999999876 888766 4789999999999999988888999999999999 99999999988888999999
Q ss_pred EEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
+++++|.++.++...|..+++|+.+++++|++.
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999999999999887889999999999999875
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=6.5e-18 Score=113.24 Aligned_cols=119 Identities=24% Similarity=0.384 Sum_probs=92.1
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCC-CCCeeecch
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH-KKLTSLPST 80 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~-n~~~~~~~~ 80 (127)
++++.|.++++|+.|++++|.+. .+++..|..+++|++|++++|.++.++...|..+++|+.|+++ + +.+..++..
T Consensus 103 i~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~ 179 (440)
T 3zyj_A 103 IEIGAFNGLANLNTLELFDNRLT--TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG-ELKRLSYISEG 179 (440)
T ss_dssp ECGGGGTTCSSCCEEECCSSCCS--SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC-CCTTCCEECTT
T ss_pred cChhhccCCccCCEEECCCCcCC--eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC-CCCCcceeCcc
Confidence 46678888999999999999876 8888888889999999999999988888778888888888888 5 567777777
Q ss_pred hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
.|.++++|+.+++++|.++.+|. +..+++|+.|++++|.++.+
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEE
T ss_pred hhhcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCcc
Confidence 77777777777777777766654 34556666666666665544
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=5.5e-18 Score=117.17 Aligned_cols=121 Identities=26% Similarity=0.338 Sum_probs=98.1
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+++..|.++++|+.|++++|.+. .+++..|..++.|++|++++|.++.+++..|..+++|+.++++ +|.+..+++..
T Consensus 47 ~~~~~~~~l~~L~~L~Ls~n~l~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~~~~ 123 (606)
T 3vq2_A 47 LKSYSFSNFSELQWLDLSRCEIE--TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV-ETKLASLESFP 123 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT-TSCCCCSSSSC
T ss_pred eChhhccCCccCcEEeCCCCccc--ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc-CCccccccccc
Confidence 45567788888888888888876 7877778888888888888888888877778888888888888 88888887666
Q ss_pred hccCCCCcEEEecCccccc--cChhhhcCCccccEEeccCCcccccC
Q psy8031 82 FRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+..+++|+.+++++|.++. +|.. |+++++|+.|++++|.++.++
T Consensus 124 ~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC
T ss_pred cCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecC
Confidence 7788888888888888874 5555 578888888888888877654
No 39
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=5.9e-18 Score=100.10 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=86.0
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDC 85 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~ 85 (127)
|..+++|+.|++++|.+. .+ ..+..++.|+++++++|.++...+..+..+++|+.++++ +|.+..++. ..+..+
T Consensus 45 ~~~l~~L~~L~l~~n~l~--~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~l~~l 119 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLI--SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS-GNKLKDISTLEPLKKL 119 (168)
T ss_dssp CGGGGGCCEEEEESSCCC--CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB-SSSCCSSGGGGGGSSC
T ss_pred HHhCCCCCEEeCcCCCCC--Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc-CCccCcchhHHHHhcC
Confidence 566778888888888765 55 445778888888888888887444445567888888888 888877653 445677
Q ss_pred CCCcEEEecCccccccCh---hhhcCCccccEEeccCCcccccC
Q psy8031 86 KKLVKLELQRNKLKYLPE---NLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 86 ~~l~~l~l~~n~~~~~~~---~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
++|+.+++++|.++.++. ..+..+++|+.+++++|.+.++|
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 120 ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 788888888888887776 45677888888888888877776
No 40
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.75 E-value=1.2e-17 Score=99.51 Aligned_cols=108 Identities=24% Similarity=0.417 Sum_probs=95.2
Q ss_pred cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l 91 (127)
.-+.++++++++. .+|..+ .+.+++|++++|+++.+++..|..+++|+.|+++ +|.++.+++..|..+++|+.+
T Consensus 13 ~~~~l~~~~n~l~--~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 13 DQTLVNCQNIRLA--SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN-SNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp CSSEEECCSSCCS--SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEeCCCCCC--ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECC-CCCCCccChhHhCCcchhhEE
Confidence 3468899999876 888866 3789999999999999988888899999999999 999999998888888999999
Q ss_pred EecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 92 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 92 ~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
++++|.++.++...|..+++|+.+++++|++...
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999999999988788899999999999987643
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=111.71 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=66.5
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TL 81 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~ 81 (127)
++..|..+++|+.|++++|.+. .+++..|..++.|+++++++|+++.++...|..+++|+.++++ +|.+..++. ..
T Consensus 68 ~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~ 144 (353)
T 2z80_A 68 SNSDLQRCVNLQALVLTSNGIN--TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL-GNPYKTLGETSL 144 (353)
T ss_dssp CTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT-TCCCSSSCSSCS
T ss_pred CHHHhccCCCCCEEECCCCccC--ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC-CCCCcccCchhh
Confidence 3444555666666666666544 5555555556666666666666665555555555666666666 555555554 34
Q ss_pred hccCCCCcEEEecCc-cccccChhhhcCCccccEEeccCCcccc
Q psy8031 82 FRDCKKLVKLELQRN-KLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
|..+++|+.+++++| .+..++...|..+++|+.+++++|.++.
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 455555666666555 3555544444555555555555555544
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.4e-17 Score=111.98 Aligned_cols=118 Identities=23% Similarity=0.324 Sum_probs=82.3
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCC-CCCeeecch
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH-KKLTSLPST 80 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~-n~~~~~~~~ 80 (127)
++++.|.++++|+.|++++|.+. .+++..|..+++|++|++++|.++.++...|..+++|+.|+++ + +.+..++..
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~ 190 (452)
T 3zyi_A 114 IEVGAFNGLASLNTLELFDNWLT--VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG-ELKKLEYISEG 190 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCS--BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC-CCTTCCEECTT
T ss_pred cChhhccCcccCCEEECCCCcCC--ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC-CCCCccccChh
Confidence 45677888888889999888876 8888888888888888888888888887777777777777777 5 566666666
Q ss_pred hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
.|.++++|+.+++++|.++.++. +..+++|+.|++++|.++.
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSE
T ss_pred hccCCCCCCEEECCCCccccccc--ccccccccEEECcCCcCcc
Confidence 66666666666666665555543 2344444444444444433
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=9.5e-18 Score=115.11 Aligned_cols=120 Identities=27% Similarity=0.394 Sum_probs=91.8
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+++..|.++++|+.|++++|.+. .+++..|..+++|++|++++|.++.+++..|..+++|+.++++ +|.+..++...
T Consensus 43 ~~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~ 119 (570)
T 2z63_A 43 LGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFP 119 (570)
T ss_dssp ECTTTTTTCSSCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TSCCCCSTTCS
T ss_pred cChhHhhCCCCceEEECCCCcCC--ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc-ccccccCCCcc
Confidence 34556777888888888888765 7777777888888888888888887777777778888888888 88887777655
Q ss_pred hccCCCCcEEEecCccccc--cChhhhcCCccccEEeccCCccccc
Q psy8031 82 FRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
+..+++|+.+++++|.++. +|.. |+++++|+.+++++|.++.+
T Consensus 120 ~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 120 IGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred ccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcccee
Confidence 6777888888888887775 4555 57788888888888877654
No 44
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.75 E-value=2e-17 Score=98.55 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=92.7
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
|..+.+++.|++++|++. .++. .....+.++.+++++|.++.+ ..+..+++|+.++++ +|.+..+++..|..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVN-NNRICRIGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECC-SSCCCEECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECC-CCcccccCcchhhcCC
Confidence 566788999999999876 6643 434344899999999999887 347788899999999 9999988877777888
Q ss_pred CCcEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031 87 KLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+|+.+++++|.++.++. ..+..+++|+.+++++|+++.+|
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 99999999999988876 34578889999999999888765
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=8.8e-18 Score=106.40 Aligned_cols=121 Identities=18% Similarity=0.289 Sum_probs=87.0
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeec-ch
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-ST 80 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~-~~ 80 (127)
++++.|..+++|+.|++++|.+. .+++..|..+++|+++++++|.++.++...+..+++|+.++++ +|.+..+. +.
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~l~~ 143 (276)
T 2z62_A 67 IEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA-HNLIQSFKLPE 143 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC-SSCCCCCCCCG
T ss_pred cCHHHccCCcCCCEEECCCCccC--ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc-CCccceecCch
Confidence 45667788888888888888876 7777777888888888888888887776567778888888888 88877643 44
Q ss_pred hhccCCCCcEEEecCccccccChhhhcCCcccc----EEeccCCccccc
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELY----TLNLKNNQLENI 125 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~----~l~l~~n~i~~~ 125 (127)
.|..+++|+.+++++|.++.++...+..+.+++ .+++++|.++.+
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~ 192 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence 467778888888888887776654444444333 455555554443
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=1.8e-17 Score=116.02 Aligned_cols=119 Identities=20% Similarity=0.377 Sum_probs=91.4
Q ss_pred hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChh--------hhcCCCCCcEEEecCCCCCee
Q psy8031 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD--------LFWNSTNITNIVLTGHKKLTS 76 (127)
Q Consensus 5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~--------~~~~~~~l~~l~l~~~n~~~~ 76 (127)
..|..+++|+.|++++|.+. .+++..|.+++.|+++++++|+++.++.. .|..+++|+.++++ +|.++.
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~-~N~l~~ 550 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIA--NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE-SNGFDE 550 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC-SSCCCC
T ss_pred cccccCCCCCEEECCCCCCC--cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC-CCCCCC
Confidence 45667778888888888766 77777778888888888888887765322 25667788888888 888888
Q ss_pred ecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 77 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 77 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
++...|.++++|+.+++++|.++.++...|..+++|+.+++++|.++.++
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 87777777888888888888888888877777888888888888777654
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=8.3e-18 Score=117.67 Aligned_cols=120 Identities=24% Similarity=0.381 Sum_probs=65.6
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+++..|..+++|+.|++++|.+. .+++..|..++.|+++++++|.++.+++..|..+++|+.++++ +|.+..+++..
T Consensus 40 ~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~-~n~l~~~~~~~ 116 (680)
T 1ziw_A 40 LPAANFTRYSQLTSLDVGFNTIS--KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM-SNSIQKIKNNP 116 (680)
T ss_dssp CCGGGGGGGTTCSEEECCSSCCC--CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCSCT
T ss_pred cCHHHHhCCCcCcEEECCCCccC--ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC-CCccCccChhH
Confidence 34455555566666666665544 4555555555556666665555555555445555555555555 55555555444
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
|..+++|+.+++++|.++..+...++.+++|+.+++++|.++.
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 5555555555555555554443334455555555555554443
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=3.5e-17 Score=104.94 Aligned_cols=118 Identities=23% Similarity=0.329 Sum_probs=80.6
Q ss_pred hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc-cChhhhcCCCCCcEEEecCCCCCeeecchhhc
Q psy8031 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83 (127)
Q Consensus 5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~ 83 (127)
..|..+++|+.|++++|.+. ..++..|..++.|+++++++|.++. ..+..+..+++|+.++++ +|.+..+++..|.
T Consensus 120 ~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~ 196 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-QCQLEQLSPTAFN 196 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCE--ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT-TSCCCEECTTTTT
T ss_pred hhhhhccCCCEEECCCCcCC--ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC-CCCcCCcCHHHhc
Confidence 45666777777777777654 5555666677777777777777664 333346667777777777 7777777666666
Q ss_pred cCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 84 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
.+++|+.+++++|.++.++...+..+++|+.+++++|.++..
T Consensus 197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 677777777777777776665566677777777777766653
No 49
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=5.1e-17 Score=98.24 Aligned_cols=108 Identities=24% Similarity=0.399 Sum_probs=97.6
Q ss_pred ceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEE
Q psy8031 13 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92 (127)
Q Consensus 13 l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~ 92 (127)
-+.++++++++. .+|..+ .+.++.|++++|+++.++ ..|..+++|+.|+++ +|.++.+++..|.++++|+.++
T Consensus 12 ~~~l~~~~~~l~--~ip~~~---~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 12 DTVVRCSNKGLK--VLPKGI---PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TTEEECTTSCCS--SCCSCC---CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCCCC--cCCCCC---CCCCCEEECCCCcCchhH-HHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEE
Confidence 467899999876 899865 368999999999999988 458899999999999 9999999998899999999999
Q ss_pred ecCccccccChhhhcCCccccEEeccCCcccccCC
Q psy8031 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127 (127)
Q Consensus 93 l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 127 (127)
+++|.++.++...|..+++|+.|++++|.++.+|+
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 99999999998888999999999999999998763
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=8.3e-18 Score=109.84 Aligned_cols=119 Identities=22% Similarity=0.253 Sum_probs=82.4
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccCh-hhhcCCCCCcEEEecCCC-CCeeecch
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS-DLFWNSTNITNIVLTGHK-KLTSLPST 80 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~~n-~~~~~~~~ 80 (127)
+++.|..+++|+.|++++|.+. .+++..|..+++|+++++++|+++.++. ..|..+++|+.++++ +| .+..+++.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~-~n~~~~~~~~~ 168 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG-NMDTFTKIQRK 168 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCS--SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEE-ESSSCCEECTT
T ss_pred CHhhcCCCCCCCEEECCCCcCC--cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECC-CCccccccCHH
Confidence 4556777777888888877765 6777766777777777777777777766 556677777777777 66 46666666
Q ss_pred hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
.|..+++|+.+++++|.++.+....++.+++|+.+++++|.+..
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 66667777777777777666644445666666666666665544
No 51
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=1.9e-17 Score=114.47 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=65.6
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
++..|..+++|+.|++++|.+. .+++..|..+++|+++++++|.++.+.+..|..+++|+.++++ +|.+..+++..|
T Consensus 49 ~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~l~~~~~ 125 (606)
T 3t6q_A 49 QNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI-QTGISSIDFIPL 125 (606)
T ss_dssp CTTTSTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT-TSCCSCGGGSCC
T ss_pred ChhHhccCccceEEECCCCccc--eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc-ccCcccCCcchh
Confidence 3445556666666666666554 5555555666666666666666665555455555666666666 555555544444
Q ss_pred ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
..+++|+.+++++|.+..++...+..+++|+.+++++|.++.
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 555555555555555554422112335555555555555544
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=1.1e-16 Score=103.70 Aligned_cols=115 Identities=23% Similarity=0.370 Sum_probs=78.0
Q ss_pred hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhcc
Q psy8031 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84 (127)
Q Consensus 5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~ 84 (127)
..|..+++|+.|++++|.+. .+|... .+.|+++++++|.++.+++..|..+++|+.++++ +|.+..+++..+..
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~--~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNIT--TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS-FNSISAVDNGSLAN 238 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCC--SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC-SSCCCEECTTTGGG
T ss_pred hhccCCCCcCEEECCCCccc--cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECC-CCcCceeChhhccC
Confidence 34445555555555555543 444433 2556666666677776666667777778888888 77777777666677
Q ss_pred CCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 85 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+++|+.+++++|.++.+|.. +..+++|+.+++++|.++.++
T Consensus 239 l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 239 TPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp STTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCC
T ss_pred CCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCccC
Confidence 77788888888877777776 367777888888888777665
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=9.7e-17 Score=107.64 Aligned_cols=113 Identities=26% Similarity=0.419 Sum_probs=103.8
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~ 90 (127)
++|+.+++++|.+. .+++..|..++.|+++++++|+++.+++..|..+++|+.|+++ +|.+..+++..|..+++|+.
T Consensus 275 ~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 275 SGVKTCDLSKSKIF--ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp SCCCEEECCSSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGGGTTCTTCCE
T ss_pred cCceEEEecCcccc--ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC-CCccCCcChhHhcCcccCCE
Confidence 68999999999976 7777788999999999999999999988789999999999999 99999998888888999999
Q ss_pred EEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+++++|.++.++...|..+++|+.+++++|.++++|
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 999999999887666789999999999999999876
No 54
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=5.2e-17 Score=105.26 Aligned_cols=88 Identities=18% Similarity=0.358 Sum_probs=68.9
Q ss_pred CCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc-EEEecCccccccChhhhcCCccccE
Q psy8031 36 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV-KLELQRNKLKYLPENLFESLKELYT 114 (127)
Q Consensus 36 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~-~l~l~~n~~~~~~~~~~~~~~~l~~ 114 (127)
++.|+.+++++|+++.++..+|.++.+|+.++++ .| +..++..+|.++.+|+ .+.+.. .++.++..+|.+|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~-~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP-HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC-TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECC-cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 4567777777777888888788888888888888 66 7778888888888887 888877 777787777888888888
Q ss_pred EeccCCcccccC
Q psy8031 115 LNLKNNQLENIT 126 (127)
Q Consensus 115 l~l~~n~i~~~~ 126 (127)
++++.|.++.++
T Consensus 302 l~l~~n~i~~I~ 313 (329)
T 3sb4_A 302 VLATGDKITTLG 313 (329)
T ss_dssp EEECSSCCCEEC
T ss_pred EEeCCCccCccc
Confidence 888777777665
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=1.2e-16 Score=103.45 Aligned_cols=119 Identities=21% Similarity=0.418 Sum_probs=73.4
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+++..|..+++|+.|++++|.+. .+.+..|..++.|+++++++|.++.++...+ ++|+.++++ +|.+..+++..
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~-~n~l~~~~~~~ 140 (330)
T 1xku_A 67 IKDGDFKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVH-ENEITKVRKSV 140 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECC-SSCCCBBCHHH
T ss_pred eChhhhccCCCCCEEECCCCcCC--eeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECC-CCcccccCHhH
Confidence 34455666666666776666654 5555555666666666666666666655432 456666666 66666666655
Q ss_pred hccCCCCcEEEecCccccc--cChhhhcCCccccEEeccCCcccccC
Q psy8031 82 FRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
|..+++|+.+++++|.++. +....+..+++|+.+++++|.++.+|
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 6666667777777666642 33334566666666666666666554
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=3.5e-17 Score=108.07 Aligned_cols=114 Identities=25% Similarity=0.436 Sum_probs=106.1
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~ 89 (127)
+..++.++++++.+. .+|+..|..++.++++++++|.++.+++..|..+++|+.++++ +|.+..+++..|..+++|+
T Consensus 44 l~~l~~l~l~~~~l~--~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESCEES--EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCC
T ss_pred cCCceEEEecCCchh--hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECC-CCCCCcCCHHHhcCCCCCC
Confidence 578999999999876 9999988999999999999999999998889999999999999 9999999888888899999
Q ss_pred EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.+++++|.++.++..+|+.+++|+.+++++|.++.++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 9999999999999988889999999999999988764
No 57
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=1.4e-16 Score=94.89 Aligned_cols=109 Identities=28% Similarity=0.466 Sum_probs=98.7
Q ss_pred cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l 91 (127)
..+.++++++++. .+|... .+.++.+++++|+++.+++..|..+++|+.++++ +|.+..+++..|..+++|+.+
T Consensus 8 ~~~~l~~~~~~l~--~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 8 SGTEIRCNSKGLT--SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS-QNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp ETTEEECCSSCCS--SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEecCCCCc--cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECC-CCcceEeChhHccCCCccCEE
Confidence 4678999999876 888755 4689999999999999998888889999999999 999999998888889999999
Q ss_pred EecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 92 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 92 ~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
++++|.++.++...|..+++|+.+++++|.++.+|
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeC
Confidence 99999999999887889999999999999998876
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.71 E-value=6.2e-17 Score=111.94 Aligned_cols=119 Identities=27% Similarity=0.390 Sum_probs=82.0
Q ss_pred hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc-cChhhhcCCCCCcEEEecCCCCCeeecchhhc
Q psy8031 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83 (127)
Q Consensus 5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~ 83 (127)
..|..+++|+.|++++|.+. ...+..|..+++|+++++++|.++. +.+..|..+++|+.++++ +|.+..+++..|.
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTK--IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS-KCQLEQISWGVFD 494 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCE--ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT-TSCCCEECTTTTT
T ss_pred hhhhccccCCEEECcCCCCC--ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC-CCcCCccChhhhc
Confidence 45667777777777777764 5555556677777777777777764 334446667777777777 7777777666666
Q ss_pred cCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 84 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.+++|+.+++++|.++.+.+..|..+++|+.+++++|+++.+|
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence 6777777777777777665544667777777777777776655
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=109.89 Aligned_cols=111 Identities=22% Similarity=0.278 Sum_probs=103.1
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~ 90 (127)
..++.|++++|++. .+++..|..++.|+++++++|+++.+++..|..+++|+.++++ +|.+..+++..|.++++|+.
T Consensus 28 ~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCC--EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccC--ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc-CCcCCccCHhhhcCcccccc
Confidence 56899999999987 8888888999999999999999999998889999999999999 99999999888999999999
Q ss_pred EEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
+++++|.++.++...++.+++|+.|++++|.++.
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 138 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCC
T ss_pred ccccccccccCCCccccccccccEEecCCCccce
Confidence 9999999999887657899999999999998876
No 60
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=1.9e-17 Score=116.90 Aligned_cols=117 Identities=27% Similarity=0.434 Sum_probs=100.2
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
++++.|..+..|+.|++++|.+. .++..+| .++.|++|++++|.++.+|.. |..+++|+.|+++ +|.+..+|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls-~N~l~~lp~~- 288 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF--NISANIF-KYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLS-HNRLTSLPAE- 288 (727)
T ss_dssp -------CCCCCCEEECTTSCCS--CCCGGGG-GCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECT-TSCCSSCCSS-
T ss_pred cChhhhccCCCCcEEECCCCCCC--CCChhhc-CCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCc-CCcCCccChh-
Confidence 46778899999999999999986 8998886 799999999999999988865 7889999999999 9999988766
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
|..+.+|+.|++++|.++.+|.. |+.+++|+.|++++|.++..
T Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSH
T ss_pred hcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCC
Confidence 57889999999999999999988 68999999999999998853
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=1.5e-16 Score=110.08 Aligned_cols=118 Identities=20% Similarity=0.238 Sum_probs=105.8
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
||.+. ...++.|++++|.+. .+++..|..++.|++|++++|+++.+.+..|..+++|+.++++ +|.+..+++..
T Consensus 27 iP~~l---~~~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~ 100 (606)
T 3t6q_A 27 IPGTL---PNSTECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT-ANPLIFMAETA 100 (606)
T ss_dssp CCTTS---CTTCCEEECTTCCCS--EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCSEECTTT
T ss_pred CcCCC---CCcCcEEEccCCccC--cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC-CCcccccChhh
Confidence 45544 246899999999987 8888888999999999999999999988889999999999999 99999998888
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
|..+++|+.+++++|.++.++...|+.+++|+.+++++|.++.+
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence 89999999999999999988666678999999999999999876
No 62
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=2.5e-16 Score=93.06 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=96.8
Q ss_pred CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCC
Q psy8031 9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88 (127)
Q Consensus 9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l 88 (127)
..+.++.|++++|.+.-+.+|.. +..++.|++|++++|.++.+ ..+..+++|+.++++ +|.+....+..+..+++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS-ENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEE-SCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECc-CCcCchHHHHHHhhCCCC
Confidence 35789999999998642366654 58899999999999999988 457889999999999 999998555656678999
Q ss_pred cEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031 89 VKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 89 ~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+.+++++|.++.++. ..+..+++|+.+++++|+++.++
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 999999999998864 45688999999999999998876
No 63
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=1.3e-16 Score=103.48 Aligned_cols=107 Identities=21% Similarity=0.417 Sum_probs=59.9
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~ 90 (127)
+.++.|++++|.+. .+++..|..++.|+++++++|+++.+.+..|..+++|+.++++ +|.+..++...+ ++|+.
T Consensus 54 ~~l~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~---~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS--ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS-KNHLVEIPPNLP---SSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC-SSCCCSCCSSCC---TTCCE
T ss_pred CCCeEEECCCCcCC--ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC-CCcCCccCcccc---ccCCE
Confidence 34555666666544 5555555556666666666666665555555555666666666 555555554432 45555
Q ss_pred EEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
+++++|.++.++...|..+++|+.+++++|.++
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 555555555555544555555555555555543
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2e-16 Score=109.59 Aligned_cols=117 Identities=23% Similarity=0.448 Sum_probs=99.7
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+++..|..+++|+.|++++|.+. .+++..|+.++.|++|++++|.++.+++..|..+++|+.|+++ +|.+..+++..
T Consensus 90 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~ 166 (597)
T 3oja_B 90 IDTYAFAYAHTIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDT 166 (597)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTT
T ss_pred CChHHhcCCCCCCEEECCCCcCC--CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee-CCcCCCCChhh
Confidence 45678899999999999999976 8998888999999999999999999999888999999999999 99999998888
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
|..+++|+.+++++|.++.++.. .+++|+.+++++|.++.
T Consensus 167 ~~~l~~L~~L~L~~N~l~~~~~~---~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 167 FQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLST 206 (597)
T ss_dssp TTTCTTCCEEECTTSCCSBCCGG---GCTTCSEEECCSSCCSE
T ss_pred hhcCCcCcEEECcCCCCCCcChh---hhhhhhhhhcccCcccc
Confidence 88899999999999999887643 34555555555554443
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=2e-16 Score=101.44 Aligned_cols=121 Identities=17% Similarity=0.270 Sum_probs=103.8
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
+++..|..+++|+.|++++|.+. +...+..|..++.|+++++++|.++.+++..|..+++|+.++++ +|.+..++...
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~ 218 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS-HNNFFSLDTFP 218 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEG-GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCSBCCSGG
T ss_pred cchhhcccCcCCCEEECCCCccc-cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC-CCccCccChhh
Confidence 35567888999999999999875 22444567899999999999999999987778899999999999 99999998877
Q ss_pred hccCCCCcEEEecCccccccChhhhcCC-ccccEEeccCCcccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESL-KELYTLNLKNNQLEN 124 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~-~~l~~l~l~~n~i~~ 124 (127)
|..+++|+.+++++|.++..+...+..+ ++|+.+++++|+++.
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 8889999999999999987766556777 489999999998763
No 66
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=3.2e-16 Score=90.94 Aligned_cols=114 Identities=17% Similarity=0.254 Sum_probs=91.6
Q ss_pred CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCC
Q psy8031 9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88 (127)
Q Consensus 9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l 88 (127)
..++++.|++++|.+.-+.+|. .+..++.++++++++|.++.+ ..+..+++|+.++++ +|.+....+..+..+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS-DNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECC-SSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECC-CCcccchHHHHhhhCCCC
Confidence 3467899999999864235665 558889999999999999887 447788999999999 999888555556668899
Q ss_pred cEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031 89 VKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 89 ~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+.+++++|.++.++. ..++.+++|+.+++++|.++.++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 999999999987752 44688899999999999988765
No 67
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=6.2e-16 Score=93.63 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=48.7
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCC-CeeecchhhccCC
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK-LTSLPSTLFRDCK 86 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~-~~~~~~~~~~~~~ 86 (127)
..+++|+.|++++|.+. ......+..+++|+++++++|+++...+..+..+++|+.++++ +|. +..++. +..++
T Consensus 85 ~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~-~n~~i~~~~~--l~~l~ 159 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVT--SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS-YNGAITDIMP--LKTLP 159 (197)
T ss_dssp TTCTTCCEEEEECTTCB--GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC-SCTBCCCCGG--GGGCS
T ss_pred hcCCCCCEEEeECCccC--cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc-CCCCccccHh--hcCCC
Confidence 34444455555544443 2222223444555555555555544333334444555555555 444 444431 34444
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
+|+.+++++|.++.++ .+..+++|+.+++++|+|.
T Consensus 160 ~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 160 ELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred CCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 5555555555555444 1344455555555555544
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=4.5e-16 Score=107.07 Aligned_cols=114 Identities=24% Similarity=0.323 Sum_probs=91.2
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
||.+.+ ++++.|++++|.+. .+++..|..++.|++|++++|+++.+++..|..+++|+.|+++ +|.++.++..
T Consensus 46 ip~~~~---~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~lp~~- 118 (562)
T 3a79_B 46 VPKDLP---PRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS-HNRLQNISCC- 118 (562)
T ss_dssp CCTTSC---TTCCEEECCSSCCC--CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT-TSCCCEECSC-
T ss_pred CCCCCC---CCcCEEECCCCCcc--ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC-CCcCCccCcc-
Confidence 555543 67888888888876 7887778888888888888888888877778888888888888 8888888775
Q ss_pred hccCCCCcEEEecCccccccCh-hhhcCCccccEEeccCCcccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~ 124 (127)
.+++|+.+++++|.++.++. ..|+++++|+.|++++|.++.
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 57888888888888887652 346788888888888887754
No 69
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.8e-16 Score=94.89 Aligned_cols=108 Identities=23% Similarity=0.390 Sum_probs=96.4
Q ss_pred cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChh-hhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD-LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~ 90 (127)
.-+.++++++++. .+|..++ ..++++++++|+++.+++. .|..+++|+.|+++ +|.++.+.+..|.++++|+.
T Consensus 9 ~~~~l~~s~~~l~--~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 9 EGTTVDCTGRGLK--EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp ETTEEECTTSCCS--SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCE
T ss_pred CCCEEEcCCCCcC--cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECC-CCCCCCcCHhHcCCcccCCE
Confidence 3478999999976 8998663 3899999999999988864 58889999999999 99999998888899999999
Q ss_pred EEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
+++++|.++.++...|..+++|+.|++++|.++.+
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 99999999999888788999999999999999875
No 70
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.68 E-value=1.3e-16 Score=95.09 Aligned_cols=112 Identities=20% Similarity=0.276 Sum_probs=96.8
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCC
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCK 86 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~ 86 (127)
...++|+.|++++|.+. .+ ..|..++.|+++++++|.++.+++..|..+++|+.++++ +|.+..++. ..+..++
T Consensus 39 ~~~~~L~~L~Ls~N~l~--~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 39 ATLDQFDAIDFSDNEIR--KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT-NNSLVELGDLDPLASLK 113 (176)
T ss_dssp GGTTCCSEEECCSSCCC--EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC-SCCCCCGGGGGGGGGCT
T ss_pred hcCCCCCEEECCCCCCC--cc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC-CCcCCcchhhHhhhcCC
Confidence 33448999999999986 66 356889999999999999999988777889999999999 999998876 3467889
Q ss_pred CCcEEEecCccccccChh---hhcCCccccEEeccCCcccc
Q psy8031 87 KLVKLELQRNKLKYLPEN---LFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~---~~~~~~~l~~l~l~~n~i~~ 124 (127)
+|+.+++++|.++.++.. ++..+++|+.++++.|...+
T Consensus 114 ~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999999988875 56889999999999987653
No 71
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=7.4e-16 Score=93.30 Aligned_cols=113 Identities=13% Similarity=0.147 Sum_probs=89.7
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
+..+++|+.|++++|.+. .++ .+..++.|+++++++|.++......+..+++|+.++++ +|.+....+..+..++
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls-~n~i~~~~~~~l~~l~ 136 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS-HSAHDDSILTKINTLP 136 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC-SSBCBGGGHHHHTTCS
T ss_pred HhcCCCCCEEEccCCCCC--cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec-CCccCcHhHHHHhhCC
Confidence 567888889999888754 443 45788899999999998886444457788899999999 8888875555567788
Q ss_pred CCcEEEecCcc-ccccChhhhcCCccccEEeccCCcccccC
Q psy8031 87 KLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 87 ~l~~l~l~~n~-~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+|+.+++++|. ++.++. +..+++|+.+++++|.++.++
T Consensus 137 ~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp SCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCCT
T ss_pred CCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcChH
Confidence 99999999997 888863 578889999999999887764
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=1.5e-16 Score=108.82 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=68.2
Q ss_pred hhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeec-chhh
Q psy8031 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-STLF 82 (127)
Q Consensus 4 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~-~~~~ 82 (127)
+..|..+++|+.|++++|.+. .+++..|..+++|++|++++|.++.+++..|..+++|+.++++ +|.+..++ +..|
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~ 119 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRIN--TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM-GNPYQTLGVTSLF 119 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT-TCCCSSSCSSCSC
T ss_pred hhhhhcCCcccEEECCCCCcC--ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC-CCcccccchhhhh
Confidence 344556666666666666554 5555555666666666666666666665555666666666666 66555431 1234
Q ss_pred ccCCCCcEEEecCcc-ccccChhhhcCCccccEEeccCCcccc
Q psy8031 83 RDCKKLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~-~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
..+++|+.+++++|. +..++...|..+++|+.+++++|.++.
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 555566666666654 455554445566666666666665554
No 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.67 E-value=5.3e-16 Score=100.55 Aligned_cols=118 Identities=19% Similarity=0.397 Sum_probs=89.3
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
++++.|..+++|+.|++++|.+. .+++..|..++.|+++++++|.++.++...+ ++|+.++++ +|.+..+++..
T Consensus 69 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~-~n~i~~~~~~~ 142 (332)
T 2ft3_A 69 LRKDDFKGLQHLYALVLVNNKIS--KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIH-DNRIRKVPKGV 142 (332)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCC--EECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECC-SSCCCCCCSGG
T ss_pred cCHhHhhCCCCCcEEECCCCccC--ccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECC-CCccCccCHhH
Confidence 34566778888888888888766 7766777888888888888888887776543 678888888 88888887777
Q ss_pred hccCCCCcEEEecCccccc--cChhhhcCCccccEEeccCCcccccC
Q psy8031 82 FRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
|..+++|+.+++++|.++. +....|..+ +|+.+++++|.++.+|
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 7778888888888887753 444445555 7888888888887765
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=2.6e-16 Score=107.70 Aligned_cols=119 Identities=26% Similarity=0.389 Sum_probs=102.5
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
||++++ +.++.|++++|.+. .+++..|..++.|+++++++|+++.+++..|..+++|+.|+++ +|.+..+++..
T Consensus 20 ip~~~~---~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~ 93 (549)
T 2z81_A 20 IPSGLT---AAMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSW 93 (549)
T ss_dssp CCSCCC---TTCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCSCCHHH
T ss_pred ccccCC---CCccEEECcCCccC--ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC-CCccCccCHHH
Confidence 566553 57999999999976 8887788999999999999999999988889999999999999 99999999888
Q ss_pred hccCCCCcEEEecCccccccCh-hhhcCCccccEEeccCCc-ccccC
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQ-LENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~-i~~~~ 126 (127)
|..+++|+.+++++|.++.++. ..++.+++|+.+++++|. +..+|
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence 8899999999999999985422 236889999999999997 55554
No 75
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.67 E-value=3.5e-16 Score=101.45 Aligned_cols=118 Identities=25% Similarity=0.436 Sum_probs=67.4
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCC-CCeeecch
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK-KLTSLPST 80 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n-~~~~~~~~ 80 (127)
||+.++ .+++|+.|++++|.+. .+|..+ ..++.|++|++++|.++.+|.. +..+++|+.++++ +| ....+|..
T Consensus 96 lp~~l~-~l~~L~~L~L~~n~l~--~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~-~n~~~~~~p~~ 169 (328)
T 4fcg_A 96 FPDQAF-RLSHLQHMTIDAAGLM--ELPDTM-QQFAGLETLTLARNPLRALPAS-IASLNRLRELSIR-ACPELTELPEP 169 (328)
T ss_dssp CCSCGG-GGTTCSEEEEESSCCC--CCCSCG-GGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEE-EETTCCCCCSC
T ss_pred cChhhh-hCCCCCEEECCCCCcc--chhHHH-hccCCCCEEECCCCccccCcHH-HhcCcCCCEEECC-CCCCccccChh
Confidence 444443 3667777777777665 566543 6677777777777777766543 5556666666666 53 33333332
Q ss_pred h--------hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 81 L--------FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 81 ~--------~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
. |.++++|+.+++++|.++.+|.. ++.+++|+.|++++|.++.+|
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCC
T ss_pred HhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCc
Confidence 1 12355555666655555555554 355555555555555555443
No 76
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=3.9e-16 Score=90.56 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=93.4
Q ss_pred hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhcc
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRD 84 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~ 84 (127)
.+..+++|+.|++++|.+. .+ ..+..++.|+++++++|.++...+..+..+++|+.++++ +|.+..++. ..+..
T Consensus 37 ~~~~l~~L~~L~l~~n~l~--~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls-~N~i~~~~~~~~~~~ 111 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLT--SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS-GNKIKDLSTIEPLKK 111 (149)
T ss_dssp CCTTCTTCCEEECTTSCCC--CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT-TSCCCSHHHHGGGGG
T ss_pred HHhhcCCCcEEECcCCCCC--Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC-CCcCCChHHHHHHhh
Confidence 5678999999999999976 66 556889999999999999998555556778999999999 999998752 55688
Q ss_pred CCCCcEEEecCccccccCh---hhhcCCccccEEeccC
Q psy8031 85 CKKLVKLELQRNKLKYLPE---NLFESLKELYTLNLKN 119 (127)
Q Consensus 85 ~~~l~~l~l~~n~~~~~~~---~~~~~~~~l~~l~l~~ 119 (127)
+++|+.+++++|.++.++. ..+..+++|+.+++++
T Consensus 112 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 112 LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999999998887 5678899999998763
No 77
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=5.5e-16 Score=101.27 Aligned_cols=122 Identities=23% Similarity=0.331 Sum_probs=50.8
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcE-EEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNT-VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~-l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
|+++|+++++|+.|++++|++. +.++.++|.+++.+.. +.+.+|+++.+++..|..+++|+.++++ +|.+..+++..
T Consensus 46 ~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~-~n~l~~~~~~~ 123 (350)
T 4ay9_X 46 QKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS-NTGIKHLPDVH 123 (350)
T ss_dssp CTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE-EECCSSCCCCT
T ss_pred CHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccc-ccccccCCchh
Confidence 4444444555555555554431 2344444444444332 2233344444444444444444444444 44443333322
Q ss_pred hccCCCCcEEEecC-ccccccChhhhcCCc-cccEEeccCCcccccC
Q psy8031 82 FRDCKKLVKLELQR-NKLKYLPENLFESLK-ELYTLNLKNNQLENIT 126 (127)
Q Consensus 82 ~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~-~l~~l~l~~n~i~~~~ 126 (127)
+.....+..+++.. +.+..++...|..+. .++.+++++|.+++++
T Consensus 124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 22222222232221 223333333333332 3555666666665554
No 78
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.65 E-value=1.1e-15 Score=91.00 Aligned_cols=96 Identities=21% Similarity=0.337 Sum_probs=85.8
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
||++++ +.++.|++++|++. .+++..|..++.|++|++++|+++.+++..|..+++|+.|+++ +|.+..+++..
T Consensus 27 iP~~~~---~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~-~N~l~~l~~~~ 100 (174)
T 2r9u_A 27 VPAGIP---TDKQRLWLNNNQIT--KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-DNHLKSIPRGA 100 (174)
T ss_dssp CCSCCC---TTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred cCCCcC---CCCcEEEeCCCCcc--ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC-CCccceeCHHH
Confidence 565553 67999999999987 8888888999999999999999999999888899999999999 99999999988
Q ss_pred hccCCCCcEEEecCccccccCh
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPE 103 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~ 103 (127)
|..+++|+.+++++|.+...+.
T Consensus 101 ~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTTCTTCSEEECCSSCBCTTBG
T ss_pred hccccCCCEEEeCCCCcccccc
Confidence 8889999999999999875543
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=7.4e-16 Score=104.97 Aligned_cols=112 Identities=27% Similarity=0.349 Sum_probs=81.6
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
||..++ ++++.|++++|.+. .+++..|..++.|++|++++|+++.+.+..|..+++|+.|+++ +|.+..+|..
T Consensus 15 ip~~~~---~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~lp~~- 87 (520)
T 2z7x_B 15 VPKDLS---QKTTILNISQNYIS--ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS-HNKLVKISCH- 87 (520)
T ss_dssp CCCSCC---TTCSEEECCSSCCC--CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC-SSCCCEEECC-
T ss_pred cccccc---ccccEEECCCCccc--ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC-CCceeecCcc-
Confidence 454443 56778888888765 6776667778888888888888887766667777888888888 7777777665
Q ss_pred hccCCCCcEEEecCcccccc--ChhhhcCCccccEEeccCCccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYL--PENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~--~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
.+++|+.+++++|.++.+ |.. |+.+++|+.|++++|.++
T Consensus 88 --~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCC
T ss_pred --ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccc
Confidence 467788888888877753 344 577777888887777665
No 80
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.65 E-value=1e-15 Score=90.79 Aligned_cols=94 Identities=24% Similarity=0.387 Sum_probs=84.6
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
||.++ .+.++.|++++|.+. .+++..|..++.|++|++++|+++.+++..|..+++|+.|+++ +|.++.+++..
T Consensus 24 ip~~~---~~~l~~L~L~~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N~l~~~~~~~ 97 (170)
T 3g39_A 24 VPTGI---PTTTQVLYLYDNQIT--KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN-DNQLKSIPRGA 97 (170)
T ss_dssp CCSCC---CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred cCccC---CCCCcEEEcCCCcCC--ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC-CCccCEeCHHH
Confidence 55555 367899999999987 8988888999999999999999999999889999999999999 99999999988
Q ss_pred hccCCCCcEEEecCcccccc
Q psy8031 82 FRDCKKLVKLELQRNKLKYL 101 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~ 101 (127)
|..+++|+.+++++|.+...
T Consensus 98 ~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTTCTTCCEEECCSSCBCTT
T ss_pred hcCCCCCCEEEeCCCCCCCC
Confidence 88899999999999987633
No 81
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.5e-15 Score=104.73 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=94.9
Q ss_pred cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031 12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91 (127)
Q Consensus 12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l 91 (127)
.|+.|++++|.+. .+|. |..++.|+.|++++|.++.+|.. ++.+++|+.|+++ +|.++.+| .+..+++|+.|
T Consensus 442 ~L~~L~Ls~n~l~--~lp~--~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls-~N~l~~lp--~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLT--VLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQAS-DNALENVD--GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCS--SCCC--GGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECC-SSCCCCCG--GGTTCSSCCEE
T ss_pred CceEEEecCCCCC--CCcC--ccccccCcEeecCcccccccchh-hhcCCCCCEEECC-CCCCCCCc--ccCCCCCCcEE
Confidence 4889999999987 7876 68999999999999999988874 7889999999999 99999987 46889999999
Q ss_pred EecCcccccc--ChhhhcCCccccEEeccCCcccccC
Q psy8031 92 ELQRNKLKYL--PENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 92 ~l~~n~~~~~--~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
++++|.++.+ |.. ++.+++|+.|++++|+++.+|
T Consensus 514 ~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 514 LLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp ECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS
T ss_pred ECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc
Confidence 9999999988 555 689999999999999998875
No 82
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.64 E-value=2.3e-15 Score=98.07 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=84.4
Q ss_pred eEEEecCC-cCcccccCccccCCCCCCcEEEecC-CcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031 14 QVIKISYH-KDSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91 (127)
Q Consensus 14 ~~l~l~~~-~~~~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l 91 (127)
..++.+++ ++. .+|. +..+.+|+.|++++ |.++.+++..|..+++|+.|+++ +|.++.+++..|..+++|+.|
T Consensus 11 ~~v~~~~~n~l~--~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 11 SGLRCTRDGALD--SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp SCEECCSSCCCT--TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCCEE
T ss_pred CEEEcCCCCCCC--ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECC-CCccceeCHHHhcCCcCCCEE
Confidence 45677777 665 7887 57788888888885 88888888778888888888888 888888888878888888888
Q ss_pred EecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 92 ELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 92 ~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
+|++|.++.+|...|..++ |+.|++.+|++.
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888888888887766555 888888888765
No 83
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=2.6e-15 Score=104.77 Aligned_cols=121 Identities=20% Similarity=0.317 Sum_probs=85.1
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCC-------CCcEEEecCCcccccChhhh-cCCCCCcEEEecCCCC
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP-------LLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKK 73 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-------~l~~l~l~~n~~~~~~~~~~-~~~~~l~~l~l~~~n~ 73 (127)
+|+.+|..+++|+.|++++|.+. .+|...+.... .|+.|++++|+++.++...+ ..+++|+.++++ +|.
T Consensus 448 lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls-~N~ 524 (636)
T 4eco_A 448 FPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS-YNS 524 (636)
T ss_dssp CCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECC-SSC
T ss_pred CCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECC-CCC
Confidence 56677777777888888888765 77776655443 77888888888877776543 367788888888 777
Q ss_pred CeeecchhhccCCCCcEEEec------Ccccc-ccChhhhcCCccccEEeccCCcccccCC
Q psy8031 74 LTSLPSTLFRDCKKLVKLELQ------RNKLK-YLPENLFESLKELYTLNLKNNQLENITR 127 (127)
Q Consensus 74 ~~~~~~~~~~~~~~l~~l~l~------~n~~~-~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 127 (127)
+..+|... ..+++|+.++++ +|.+. .+|.. ++.+++|+.|++++|.++.+|.
T Consensus 525 l~~ip~~~-~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~ip~ 583 (636)
T 4eco_A 525 FSKFPTQP-LNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQIGSNDIRKVNE 583 (636)
T ss_dssp CSSCCCGG-GGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCCCBCCS
T ss_pred CCCcChhh-hcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEECCCCcCCccCH
Confidence 77766553 557778888874 34433 55555 4677888888888888877763
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=8.8e-16 Score=100.30 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=79.1
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecC-CcccccChhhhcCCC-CCcEEEecCCCCCeeecch
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNST-NITNIVLTGHKKLTSLPST 80 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~-~l~~l~l~~~n~~~~~~~~ 80 (127)
++++|..+++|+.|++++|++. .+++..+.....+..+++.+ +++..++...|.... .++.++++ +|.++.++..
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~-~N~i~~i~~~ 172 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIK--HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN-KNGIQEIHNS 172 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCS--SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC-SSCCCEECTT
T ss_pred Cchhhhhccccccccccccccc--cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc-cccccCCChh
Confidence 3444555555555555555443 44444434444444444433 345555555555443 46778888 8888888887
Q ss_pred hhccCCCCcEEEec-CccccccChhhhcCCccccEEeccCCcccccCC
Q psy8031 81 LFRDCKKLVKLELQ-RNKLKYLPENLFESLKELYTLNLKNNQLENITR 127 (127)
Q Consensus 81 ~~~~~~~l~~l~l~-~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 127 (127)
.|. ..++..+.+. +|.++.+|..+|..+++|+.|++++|+++++|.
T Consensus 173 ~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 173 AFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp SST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred hcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 765 3577888886 468888988888899999999999999998873
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=3.9e-15 Score=95.77 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=14.8
Q ss_pred CCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 85 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
+++|+.+++++|.++.++. +..+++|+.|++++|.++
T Consensus 150 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 3344444444444433332 233344444444444433
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=108.36 Aligned_cols=113 Identities=25% Similarity=0.359 Sum_probs=93.6
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~ 90 (127)
++++.|++++|.+. .+++..|..++.|+.+++++|.++.+++..|..+++|+.|+++ +|.+..+.+..|.++++|+.
T Consensus 266 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGFVF--SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS-YNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCCCC--EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE-SCCCSCCCSCSCSSCTTCCE
T ss_pred CCccEEECCCCccc--ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC-CCCCCccCHHHhcCCCCCCE
Confidence 67888888888876 7777778888888888888888888877778888888888888 88888887777788888888
Q ss_pred EEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+++++|.+..++...|..+++|+.|++++|.++.++
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 888888888887776778888888888888877654
No 87
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=2e-15 Score=97.85 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=97.6
Q ss_pred CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCc-EEEecCCCCCeeecchhhccCCC
Q psy8031 9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT-NIVLTGHKKLTSLPSTLFRDCKK 87 (127)
Q Consensus 9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~-~l~l~~~n~~~~~~~~~~~~~~~ 87 (127)
.+++|+.+++++|.+. .+++++|.++.+|+.+++.+| ++.++.++|.++.+|+ .+.++ . .+..+++.+|.+|.+
T Consensus 224 ~~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~-~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 224 YMPNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP-A-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp HCTTCCEEECTTBCCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC-T-TCCEECTTTTTTCTT
T ss_pred hcCCCeEEECCCCCcc--eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc-c-cceEEchhhhhCCcc
Confidence 3889999999999876 999999999999999999997 9999999999999999 99999 7 899999999999999
Q ss_pred CcEEEecCccccccChhhhcCCccccEEec
Q psy8031 88 LVKLELQRNKLKYLPENLFESLKELYTLNL 117 (127)
Q Consensus 88 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 117 (127)
|+.+++.+|.++.++..+|.++++|+.++.
T Consensus 299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999999999999999999999998864
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=1.5e-15 Score=97.93 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=62.0
Q ss_pred hhhhcCCccceEEEecCCcCcccccCcccc-CCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLF-ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 4 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
+..|..+++|+.|++++|.+. .+++..+ ..++.|+++++++|.++.++.. ..+++|+.++++ +|.+..+++. +
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls-~N~l~~l~~~-~ 210 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEID--TVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLS-SNKLAFMGPE-F 210 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCC--EEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECC-SSCCCEECGG-G
T ss_pred chhhhccCCCCEEECCCCCCC--cccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECC-CCcCCcchhh-h
Confidence 334455555666666665544 3333222 3455566666666665555332 225556666666 6666665554 4
Q ss_pred ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
..+++|+.+++++|.++.+|.. +..+++|+.+++++|++.
T Consensus 211 ~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCB
T ss_pred cccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCcc
Confidence 4555666666666666666554 355566666666666554
No 89
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=4.3e-15 Score=101.21 Aligned_cols=111 Identities=23% Similarity=0.290 Sum_probs=63.8
Q ss_pred hcCCccceEEEecCCcCcccc-cCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKE-LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 85 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~ 85 (127)
|..+++|+.|++++|.+. . +|...|..++.|+.+++++|+++...+..+. ++|+.++++ +|.++.+|...+ .+
T Consensus 370 ~~~l~~L~~L~Ls~N~l~--~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls-~N~l~~ip~~~~-~l 443 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVS--YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH-SNKIKSIPKQVV-KL 443 (520)
T ss_dssp HTTCTTCCEEECCSSCCB--CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC-SSCCCCCCGGGG-GC
T ss_pred HhhCCCCCEEECCCCcCC--cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC-CCcccccchhhh-cC
Confidence 455555555555555543 3 5554455555555555555555432221111 456666666 666666665543 56
Q ss_pred CCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 86 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
++|+.+++++|.++.+|...|..+++|+.+++++|+++
T Consensus 444 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 66667777766666666655566666677777666654
No 90
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=2e-15 Score=97.42 Aligned_cols=112 Identities=19% Similarity=0.145 Sum_probs=93.9
Q ss_pred CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhh-cCCCCCcEEEecCCCCCeeecchhhccCCC
Q psy8031 9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKKLTSLPSTLFRDCKK 87 (127)
Q Consensus 9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~-~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~ 87 (127)
.+++|+.|++++|.+. .+++..|..++.|+++++++|.++.+++..+ ..+++|+.++++ +|.++.++... .+++
T Consensus 118 ~~~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~--~l~~ 192 (317)
T 3o53_A 118 RGQGKKNIYLANNKIT--MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ-YNFIYDVKGQV--VFAK 192 (317)
T ss_dssp CCSSCEEEECCSSCCC--SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT-TSCCCEEECCC--CCTT
T ss_pred ccCCCCEEECCCCCCC--CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC-CCcCccccccc--cccc
Confidence 3567888888888876 7777777888999999999999998765544 467899999999 99998886543 3789
Q ss_pred CcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 88 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 88 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
|+.+++++|.++.++.. +..+++|+.+++++|.++.+|
T Consensus 193 L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 193 LKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp CCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC
T ss_pred CCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchh
Confidence 99999999999999887 688899999999999998876
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=6.4e-15 Score=92.91 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=63.5
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
+..+++|+.|++++|++. .+++ +..++.|+.+++++|+++.++.. .. ++|+.|+++ +|.++.++. +..++
T Consensus 59 l~~l~~L~~L~L~~N~i~--~~~~--l~~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~L~-~N~l~~~~~--l~~l~ 128 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQIS--DLSP--LKDLTKLEELSVNRNRLKNLNGI--PS-ACLSRLFLD-NNELRDTDS--LIHLK 128 (263)
T ss_dssp GGGCTTCCEEECCSSCCC--CCGG--GTTCSSCCEEECCSSCCSCCTTC--CC-SSCCEEECC-SSCCSBSGG--GTTCT
T ss_pred HhhCCCCCEEECCCCccC--CChh--hccCCCCCEEECCCCccCCcCcc--cc-CcccEEEcc-CCccCCChh--hcCcc
Confidence 455666666666666654 5554 46666666666666666665542 12 556666666 665555532 45556
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
+|+.+++++|.++.++. +..+++|+.+++++|.++.+
T Consensus 129 ~L~~L~Ls~N~i~~~~~--l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 129 NLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp TCCEEECTTSCCCBCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred cccEEECCCCcCCCChH--HccCCCCCEEECCCCcCcch
Confidence 66666666666666542 35566666666666665543
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=8.9e-15 Score=93.45 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=27.6
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCee
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS 76 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~ 76 (127)
..+++|+.|++++|++. .+++ +..+++|++|++++|.++.++. +..+++|+.|+++ +|.+..
T Consensus 65 ~~l~~L~~L~L~~n~l~--~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~-~n~i~~ 126 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLT--DIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE-HNGISD 126 (291)
T ss_dssp GGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT-TSCCCC
T ss_pred hcCCCCCEEEccCCccC--CCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECC-CCcCCC
Confidence 44455555555555443 3333 3444444444444444444332 3334444444444 444433
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=5.9e-15 Score=94.94 Aligned_cols=108 Identities=20% Similarity=0.388 Sum_probs=62.4
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
+..+++|+.|++++|.+. .+++ +..+++|+.+++++|.++.+++ +..+++|+.|+++ +|.+..+++ +..++
T Consensus 103 ~~~l~~L~~L~l~~n~l~--~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~-~n~l~~~~~--l~~l~ 173 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQIT--DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG-NAQVSDLTP--LANLS 173 (308)
T ss_dssp GTTCTTCCEEECTTSCCC--CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC-SSCCCCCGG--GTTCT
T ss_pred hcCCCCCCEEECCCCCCC--Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc-CCcCCCChh--hcCCC
Confidence 444555555555555543 4433 4555666666666666555543 4455666666666 666665544 45566
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
+|+.+++++|.++.++. +..+++|+.+++++|.++.+
T Consensus 174 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence 66666666666665554 35566666666666666544
No 94
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=1.1e-15 Score=98.46 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=13.2
Q ss_pred CCCcEEEecCCcccccChhhhcCCCCCcEEEec
Q psy8031 37 PLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69 (127)
Q Consensus 37 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 69 (127)
++|+++++++|+++.+++..|..+++|+.++++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECC
Confidence 334444444444443333333334444444444
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.61 E-value=4.5e-15 Score=102.12 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=57.3
Q ss_pred hhhcCCccceEEEecCCcCcccccCc--cccCCCCCCcEEEecCCcccc-cChhhhcCCCC-------------------
Q psy8031 5 DLFAEMKYLQVIKISYHKDSLKELPS--GLFANLPLLNTVILGESSIAE-LPSDLFWNSTN------------------- 62 (127)
Q Consensus 5 ~~~~~~~~l~~l~l~~~~~~~~~~~~--~~~~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~------------------- 62 (127)
..|..+++|+.|++++|++. .++. ..|..++.|+.+++++|+++. ++...|..+++
T Consensus 371 ~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 371 QGCSTLKRLQTLILQRNGLK--NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTCCSCSSCCEEECCSSCCC--BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred hhhcccCCCCEEECCCCCcC--CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 33455555666666665543 4332 234555555555555555554 44444444444
Q ss_pred ---CcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031 63 ---ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122 (127)
Q Consensus 63 ---l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i 122 (127)
|+.++++ +|.++.+|...+ .+++|+.+++++|.++.+|...|..+++|+.+++++|++
T Consensus 449 ~~~L~~L~L~-~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 449 PPKVKVLDLH-NNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CTTCSEEECC-SSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred cCcCCEEECC-CCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 4455555 444544444443 444555555555555555444344445555555555544
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=106.91 Aligned_cols=116 Identities=22% Similarity=0.354 Sum_probs=97.9
Q ss_pred chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82 (127)
Q Consensus 3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~ 82 (127)
++..|..+++|+.|++++|.+. .+++..|..+++|++|++++|.++.+.+..|..+++|+.++++ +|.+..+++..|
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~ 358 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKIN--KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ-KNHIAIIQDQTF 358 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCC--EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC-SCCCCCCCSSCS
T ss_pred ChhhhhcCCCCCEEECCCCcCC--CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC-CCCCCccChhhh
Confidence 4567888999999999999986 8888888999999999999999998877778999999999999 999999988888
Q ss_pred ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
..+++|+.+++++|.++.++. +++|+.+++++|+++.+|
T Consensus 359 ~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 359 KFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp CSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCCCC
T ss_pred cCCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCccccc
Confidence 889999999999998886643 455666666666665544
No 97
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.61 E-value=4.1e-15 Score=96.45 Aligned_cols=109 Identities=20% Similarity=0.270 Sum_probs=60.8
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCC
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 87 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~ 87 (127)
.++++|+.|++++|.+. .+|.. +..++.|+.|++++|.++.+++. +..+++|+.|+++ +|.+....+..|..+++
T Consensus 180 ~~l~~L~~L~L~~n~l~--~lp~~-l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls-~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR--SLPAS-IANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLR-GCTALRNYPPIFGGRAP 254 (328)
T ss_dssp EESTTCCEEEEEEECCC--CCCGG-GGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECT-TCTTCCBCCCCTTCCCC
T ss_pred ccCCCCCEEECcCCCcC--cchHh-hcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECc-CCcchhhhHHHhcCCCC
Confidence 34555555555555544 55543 35566666666666666655553 4555666666666 55444333333455666
Q ss_pred CcEEEecCcc-ccccChhhhcCCccccEEeccCCcc
Q psy8031 88 LVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQL 122 (127)
Q Consensus 88 l~~l~l~~n~-~~~~~~~~~~~~~~l~~l~l~~n~i 122 (127)
|+.+++++|. ...+|.. +..+++|+.|++++|.+
T Consensus 255 L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTT
T ss_pred CCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCc
Confidence 6666666653 3345544 35666666666666543
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.1e-14 Score=104.54 Aligned_cols=121 Identities=19% Similarity=0.333 Sum_probs=89.4
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCC-------CCcEEEecCCcccccChhhh-cCCCCCcEEEecCCCC
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP-------LLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKK 73 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-------~l~~l~l~~n~~~~~~~~~~-~~~~~l~~l~l~~~n~ 73 (127)
+|..+|..+++|+.|++++|.+. .+|...+.... +|+.|++++|+++.++...+ ..+++|+.|+++ +|.
T Consensus 688 lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls-~N~ 764 (876)
T 4ecn_A 688 FPTELFATGSPISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVS-YNC 764 (876)
T ss_dssp CCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECC-SSC
T ss_pred cCHHHHccCCCCCEEECCCCcCC--ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeC-CCC
Confidence 67777777888888888888876 78877765443 78888888888887776533 367888888888 888
Q ss_pred CeeecchhhccCCCCcEEEecC------cccc-ccChhhhcCCccccEEeccCCcccccCC
Q psy8031 74 LTSLPSTLFRDCKKLVKLELQR------NKLK-YLPENLFESLKELYTLNLKNNQLENITR 127 (127)
Q Consensus 74 ~~~~~~~~~~~~~~l~~l~l~~------n~~~-~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 127 (127)
+..+|... ..+++|+.+++++ |.+. .+|.. +..+++|+.|++++|.++.+|+
T Consensus 765 L~~lp~~l-~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~L~~Ip~ 823 (876)
T 4ecn_A 765 FSSFPTQP-LNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSNDIRKVDE 823 (876)
T ss_dssp CSSCCCGG-GGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCCCBCCS
T ss_pred CCccchhh-hcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCCCCCCccCH
Confidence 88776653 5678888888865 4433 45555 4778888888888888877763
No 99
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.61 E-value=5.8e-15 Score=95.13 Aligned_cols=89 Identities=13% Similarity=0.270 Sum_probs=41.9
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCe-eecchhhccC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDC 85 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~-~~~~~~~~~~ 85 (127)
|..+++|+.|++++|.+. ...+..|..+++|+++++++|.++...+..+..+++|+.++++ .|.+. .++.. +..+
T Consensus 97 l~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~-l~~l 172 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVS--GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD-GNRISGAIPDS-YGSF 172 (313)
T ss_dssp GGGCTTCSEEEEEEECCE--EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCEEECCGG-GGCC
T ss_pred HhcCCCCCEEECcCCeeC--CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc-CCcccCcCCHH-Hhhh
Confidence 455555555555555543 2222333555555555555555553222234445555555555 55554 22222 2333
Q ss_pred C-CCcEEEecCcccc
Q psy8031 86 K-KLVKLELQRNKLK 99 (127)
Q Consensus 86 ~-~l~~l~l~~n~~~ 99 (127)
. .|+.+++++|.++
T Consensus 173 ~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 173 SKLFTSMTISRNRLT 187 (313)
T ss_dssp CTTCCEEECCSSEEE
T ss_pred hhcCcEEECcCCeee
Confidence 3 4444444444443
No 100
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.60 E-value=8.4e-15 Score=102.22 Aligned_cols=88 Identities=24% Similarity=0.421 Sum_probs=39.5
Q ss_pred CCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC-------CCcEEEecCccccccChhhh-cC
Q psy8031 37 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK-------KLVKLELQRNKLKYLPENLF-ES 108 (127)
Q Consensus 37 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~-------~l~~l~l~~n~~~~~~~~~~-~~ 108 (127)
++++.+++++|.++.++...+..+++|+.++++ +|.+..++...+.... +|+.+++++|.++.+|..++ ..
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLM-GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC-SSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECC-CCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 344444444444444444444444444444444 4444444444333221 44444444444444444422 14
Q ss_pred CccccEEeccCCccccc
Q psy8031 109 LKELYTLNLKNNQLENI 125 (127)
Q Consensus 109 ~~~l~~l~l~~n~i~~~ 125 (127)
+++|+.|++++|+++.+
T Consensus 512 l~~L~~L~Ls~N~l~~i 528 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSKF 528 (636)
T ss_dssp CTTCCEEECCSSCCSSC
T ss_pred CCCcCEEECCCCCCCCc
Confidence 44444444444444443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=1.3e-14 Score=92.72 Aligned_cols=109 Identities=21% Similarity=0.359 Sum_probs=90.1
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
+..+++|+.|++++|.+. .++. +..++.|+.|++++|+++.++ .+..+++|+.++++ +|.+..++ .+..++
T Consensus 86 l~~l~~L~~L~l~~n~l~--~~~~--l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~-~n~l~~~~--~l~~l~ 156 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVK--DLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLG-NNKITDIT--VLSRLT 156 (291)
T ss_dssp GTTCTTCCEEECCSSCCC--CGGG--GTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECC-SSCCCCCG--GGGGCT
T ss_pred cccCCCCCEEECCCCcCC--CChh--hccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEcc-CCcCCcch--hhccCC
Confidence 678889999999999876 6554 688899999999999988874 36678899999999 88888873 367788
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+|+.+++++|.++.++. +..+++|+.|++++|.++.++
T Consensus 157 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh
Confidence 99999999999888766 578889999999999887764
No 102
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=8.2e-15 Score=94.44 Aligned_cols=115 Identities=15% Similarity=0.308 Sum_probs=83.7
Q ss_pred hhhcCCccceEEEecC-CcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhc
Q psy8031 5 DLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83 (127)
Q Consensus 5 ~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~ 83 (127)
..|..+++|+.|++++ |.+. +.+|. .|..++.|+++++++|.++...+..|..+++|+.++++ +|.+....+..+.
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~-~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLV-GPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS-YNALSGTLPPSIS 146 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEE-SCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC-SSEEESCCCGGGG
T ss_pred hhHhCCCCCCeeeCCCCCccc-ccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC-CCccCCcCChHHh
Confidence 3567788888888884 6654 23444 45778888888888888884444457778888888888 8888754444467
Q ss_pred cCCCCcEEEecCcccc-ccChhhhcCCc-cccEEeccCCccc
Q psy8031 84 DCKKLVKLELQRNKLK-YLPENLFESLK-ELYTLNLKNNQLE 123 (127)
Q Consensus 84 ~~~~l~~l~l~~n~~~-~~~~~~~~~~~-~l~~l~l~~n~i~ 123 (127)
.+++|+.+++++|.++ .+|.. +..++ +|+.+++++|.++
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE
T ss_pred cCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee
Confidence 7888888888888887 66666 46665 7888888888776
No 103
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=3e-15 Score=96.41 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=68.4
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCccccc---Chh-hhcCCCCCcEEEecCCCCCeee---cchhhc
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL---PSD-LFWNSTNITNIVLTGHKKLTSL---PSTLFR 83 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~---~~~-~~~~~~~l~~l~l~~~n~~~~~---~~~~~~ 83 (127)
++|+.|++++|++. .+++..|..+++|+++++++|++... +.. .+..+++|+.++++ +|.+..+ +...+.
T Consensus 149 ~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 149 PGLKVLSIAQAHSL--NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR-NAGMETPSGVCSALAA 225 (312)
T ss_dssp TTCCEEEEESCSCC--CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT-TSCCCCHHHHHHHHHH
T ss_pred CCCcEEEeeCCCCc--cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC-CCcCcchHHHHHHHHh
Confidence 56666666666654 66656667777777777777765431 211 22556677777777 7766633 334444
Q ss_pred cCCCCcEEEecCccccccC-hhhhcCCccccEEeccCCcccccC
Q psy8031 84 DCKKLVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 84 ~~~~l~~l~l~~n~~~~~~-~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.+++|+.+++++|.++..+ ...+..+++|+.|++++|.++++|
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh
Confidence 5566777777777666543 222344566677777777666655
No 104
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.59 E-value=2.8e-14 Score=92.80 Aligned_cols=111 Identities=23% Similarity=0.354 Sum_probs=80.4
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
+..+++|+.|++++|.+. .+++ +..++.++++++++|.++.++ .+..+++|+.++++ +|.+..++ .+..++
T Consensus 217 ~~~~~~L~~L~l~~n~l~--~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~n~l~~~~--~~~~l~ 287 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKIT--DLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVG-SNQISDIS--VLNNLS 287 (347)
T ss_dssp GGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC-SSCCCCCG--GGGGCT
T ss_pred hhcCCcCCEEEccCCccC--CCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEcc-CCccCCCh--hhcCCC
Confidence 566777788888887765 5555 567777888888887777663 35667778888888 77777663 256677
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+|+.+++++|.++..+...++.+++|+.+++++|+++.++
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 7888888888777666666677778888888888777653
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=6.9e-15 Score=99.89 Aligned_cols=110 Identities=19% Similarity=0.157 Sum_probs=50.5
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhc-CCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW-NSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~-~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~ 89 (127)
++|+.|++++|.+. .+++..|..++.|+.|++++|.++.+++..+. .+++|+.|+++ +|.+..++... .+++|+
T Consensus 120 ~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls-~N~l~~~~~~~--~l~~L~ 194 (487)
T 3oja_A 120 QGKKNIYLANNKIT--MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ-YNFIYDVKGQV--VFAKLK 194 (487)
T ss_dssp SSCEEEECCSSCCC--SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT-TSCCCEEECCC--CCTTCC
T ss_pred CCCCEEECCCCCCC--CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC-CCccccccccc--cCCCCC
Confidence 34444445444443 34333444455555555555555543333232 34445555555 44444443321 244455
Q ss_pred EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.+++++|.++.++.. +..+++|+.+++++|.++.+|
T Consensus 195 ~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 195 TLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp EEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC
T ss_pred EEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccc
Confidence 555555555444444 344444555555555444433
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1.4e-14 Score=91.30 Aligned_cols=108 Identities=17% Similarity=0.249 Sum_probs=93.8
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
|..+++|+.|++++|++. .++... . +.|+.|++++|+++.++. +..+++|+.++++ +|.++.++ .+..++
T Consensus 81 l~~l~~L~~L~L~~N~l~--~l~~~~--~-~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~Ls-~N~i~~~~--~l~~l~ 150 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLK--NLNGIP--S-ACLSRLFLDNNELRDTDS--LIHLKNLEILSIR-NNKLKSIV--MLGFLS 150 (263)
T ss_dssp GTTCSSCCEEECCSSCCS--CCTTCC--C-SSCCEEECCSSCCSBSGG--GTTCTTCCEEECT-TSCCCBCG--GGGGCT
T ss_pred hccCCCCCEEECCCCccC--CcCccc--c-CcccEEEccCCccCCChh--hcCcccccEEECC-CCcCCCCh--HHccCC
Confidence 788999999999999986 777643 3 899999999999998753 7889999999999 99999886 367789
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+|+.+++++|.++.+ ..+..+++|+.+++++|++...|
T Consensus 151 ~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 151 KLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 999999999999988 33688999999999999887654
No 107
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=9.2e-15 Score=99.27 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=98.8
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCcccc-CCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLF-ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~ 80 (127)
+++..|..+++|+.|++++|.+. .+++..+ ..++.|+.|++++|.++.++.. ..+++|+.|+++ +|.+..+++.
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~l~~L~~L~Ls-~N~l~~~~~~ 209 (487)
T 3oja_A 135 LRDLDEGCRSRVQYLDLKLNEID--TVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLS-SNKLAFMGPE 209 (487)
T ss_dssp GGGBCGGGGSSEEEEECTTSCCC--EEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECC-SSCCCEECGG
T ss_pred CCchhhcCCCCCCEEECCCCCCC--CcChHHHhhhCCcccEEecCCCcccccccc--ccCCCCCEEECC-CCCCCCCCHh
Confidence 34567788999999999999986 5444444 4789999999999999988653 358999999999 9999999887
Q ss_pred hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
+..+++|+.+++++|.++.+|.. +..+++|+.+++++|++.
T Consensus 210 -~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 210 -FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBC
T ss_pred -HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCc
Confidence 67789999999999999999887 578899999999999886
No 108
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.58 E-value=2.1e-14 Score=93.38 Aligned_cols=109 Identities=17% Similarity=0.317 Sum_probs=93.9
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
+..+++|+.|++++|.+. .++ .+..+++|+.+++++|.++.++ .+..+++|+.++++ +|.+...++..+..++
T Consensus 239 ~~~l~~L~~L~l~~n~l~--~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQIS--DIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLN-NNQLGNEDMEVIGGLT 311 (347)
T ss_dssp GTTCTTCCEEECCSSCCC--CCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECC-SSCCCGGGHHHHHTCT
T ss_pred hhcCCCCCEEECCCCccC--CCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECc-CCcCCCcChhHhhccc
Confidence 678999999999999876 663 4688999999999999999874 37788999999999 9999988888788899
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
+|+.+++++|.++.++. +..+++|+.+++++|.+++
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence 99999999999998877 4789999999999999864
No 109
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=2.3e-14 Score=101.79 Aligned_cols=114 Identities=19% Similarity=0.220 Sum_probs=62.0
Q ss_pred hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 85 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~ 85 (127)
.|..+++|+.|++++|.+. ...+..+..++.|+++++++|+++...+..+..+++|+.++++ +|.+....+..+..+
T Consensus 437 ~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~-~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLE--GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS-NNRLTGEIPKWIGRL 513 (768)
T ss_dssp GGGGCTTCCEEECCSSCCC--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC-SSCCCSCCCGGGGGC
T ss_pred HHhcCCCCCEEECCCCccc--CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc-CCccCCcCChHHhcC
Confidence 3444555555555555543 2222333555566666666666554333345556666666666 666553333334556
Q ss_pred CCCcEEEecCcccc-ccChhhhcCCccccEEeccCCccc
Q psy8031 86 KKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 86 ~~l~~l~l~~n~~~-~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
++|+.+++++|.+. .+|.. ++.+++|+.+++++|+++
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp TTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccC
Confidence 66666666666655 34443 456666666666666655
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=96.41 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=63.2
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc---cCh-hhhcCCCCCcEEEecCCCCCeeecch---
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE---LPS-DLFWNSTNITNIVLTGHKKLTSLPST--- 80 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~---~~~-~~~~~~~~l~~l~l~~~n~~~~~~~~--- 80 (127)
..+++|+.|++++|.+. .+++..|..++.|++|++++|++.. ++. ..+..+++|+.|+++ +|.++.++..
T Consensus 142 ~~~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~ 218 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSP--AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR-NTGMETPTGVCAA 218 (310)
T ss_dssp TBCSCCCEEEEECCSSC--CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC-SSCCCCHHHHHHH
T ss_pred hhccCCCEEEeeCCCcc--hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC-CCCCCchHHHHHH
Confidence 34666777777777654 5666666667777777777776542 211 112345556666666 6655544332
Q ss_pred hhccCCCCcEEEecCcccccc-ChhhhcCC---ccccEEeccCCcccccC
Q psy8031 81 LFRDCKKLVKLELQRNKLKYL-PENLFESL---KELYTLNLKNNQLENIT 126 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~-~~~~~~~~---~~l~~l~l~~n~i~~~~ 126 (127)
.+..+++|+.+++++|.++.+ |.. +..+ ++|+.|++++|.++.+|
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCCCSCC
T ss_pred HHhcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCCCchh
Confidence 233455666666666665544 332 2333 45666666666655554
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=98.50 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=84.0
Q ss_pred CchhhhcCCccceEEEecCCcCcccc--cC-ccccCCCCCCcEEEecCCcccccChh---hhcCCCCCcEEEecCCCCCe
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKE--LP-SGLFANLPLLNTVILGESSIAELPSD---LFWNSTNITNIVLTGHKKLT 75 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~--~~-~~~~~~~~~l~~l~l~~n~~~~~~~~---~~~~~~~l~~l~l~~~n~~~ 75 (127)
+++..|+.+++|+.|++++|++. +. ++ ...+..+++|++|++++|+++.++.. .+..+++|+.|+++ +|.+.
T Consensus 160 ~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls-~N~l~ 237 (310)
T 4glp_A 160 FSCEQVRAFPALTSLDLSDNPGL-GERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLS-HNSLR 237 (310)
T ss_dssp CCTTSCCCCTTCCEEECCSCTTC-HHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECT-TSCCC
T ss_pred hhHHHhccCCCCCEEECCCCCCc-cchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECC-CCCCC
Confidence 56677888999999999999853 11 22 22235678888888888888755432 34566788888888 88887
Q ss_pred eecchhhccC---CCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 76 SLPSTLFRDC---KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 76 ~~~~~~~~~~---~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
.+.+..+..+ ++|+.+++++|.++.+|...+ ++|+.|++++|+++.+|
T Consensus 238 ~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 238 ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCC
T ss_pred ccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCc
Confidence 7633223333 578888888888887777542 67888888888777654
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=3e-14 Score=99.00 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=16.9
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 51 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~ 51 (127)
..+++|+.|++++|.+. .+++ +..++.|+.|++++|.++.
T Consensus 62 ~~l~~L~~L~Ls~N~l~--~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLT--DIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp GGCTTCCEEECTTSCCC--CCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCCCCEEEeeCCCCC--CChh--hccCCCCCEEECcCCCCCC
Confidence 34444444444444433 3333 2334444444444444443
No 113
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.56 E-value=2.1e-14 Score=93.54 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=84.2
Q ss_pred CchhhhcCCccceEEEecC-CcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031 2 FPKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~ 80 (127)
||+ +..+++|+.|++++ |.+. .+++..|..+++|+.|++++|+++.+++..|..+++|+.|+++ +|.+..+++.
T Consensus 24 ip~--l~~~~~L~~L~l~~~n~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~ 98 (347)
T 2ifg_A 24 LHH--LPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS-FNALESLSWK 98 (347)
T ss_dssp TTT--SCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC-SSCCSCCCST
T ss_pred cCC--CCCCCCeeEEEccCCCCCC--CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC-CCccceeCHH
Confidence 666 68889999999996 9876 9999999999999999999999999999889999999999999 9999999998
Q ss_pred hhccCCCCcEEEecCcccc
Q psy8031 81 LFRDCKKLVKLELQRNKLK 99 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~ 99 (127)
.|..+. |+.|++.+|.+.
T Consensus 99 ~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TTCSCC-CCEEECCSSCCC
T ss_pred HcccCC-ceEEEeeCCCcc
Confidence 887655 999999999886
No 114
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.55 E-value=3.8e-14 Score=100.75 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=87.5
Q ss_pred hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhcc
Q psy8031 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84 (127)
Q Consensus 5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~ 84 (127)
..|..+++|+.|++++|.+. ...+..|..+++|+.+++++|.++...+..+..+++|+.++++ +|.+....+..+..
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD-FNDLTGEIPSGLSN 488 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEE--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC-SSCCCSCCCGGGGG
T ss_pred HHHhcCCCCCEEECcCCccc--CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec-CCcccCcCCHHHhc
Confidence 45577888888888888764 4444556778888888888888885544457778888888888 88887555555677
Q ss_pred CCCCcEEEecCcccc-ccChhhhcCCccccEEeccCCccc
Q psy8031 85 CKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 85 ~~~l~~l~l~~n~~~-~~~~~~~~~~~~l~~l~l~~n~i~ 123 (127)
+++|+.+++++|.++ .+|.. ++.+++|+.+++++|+++
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCE
T ss_pred CCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCccc
Confidence 888888888888887 55555 578888889999888877
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=4.8e-14 Score=97.97 Aligned_cols=109 Identities=20% Similarity=0.359 Sum_probs=94.3
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
+..+++|+.|++++|.+. .++ .+..++.|+.|++++|.+..++. +..+++|+.|+++ +|.+..+ ..+..++
T Consensus 83 l~~l~~L~~L~Ls~N~l~--~l~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls-~N~l~~l--~~l~~l~ 153 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIK--DLS--SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLG-NNKITDI--TVLSRLT 153 (605)
T ss_dssp GGGCTTCCEEECCSSCCC--CCT--TSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEECC-SSCCCCC--GGGGSCT
T ss_pred hccCCCCCEEECcCCCCC--CCh--hhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEECC-CCccCCc--hhhcccC
Confidence 678999999999999876 665 36889999999999999998753 6788999999999 9999887 3367889
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+|+.|++++|.+..++. +..+++|+.|++++|.++.++
T Consensus 154 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh
Confidence 99999999999998866 588999999999999988764
No 116
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=3.2e-14 Score=102.20 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=69.6
Q ss_pred hcCCccceEEEecCCcCcccc------------------cCccc-cCCCCCCcEEEecCCcccccChhhhcCCCCCcEEE
Q psy8031 7 FAEMKYLQVIKISYHKDSLKE------------------LPSGL-FANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 67 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~------------------~~~~~-~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~ 67 (127)
|..+++|+.|++++|.+. . +|+.+ |..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 444 l~~L~~L~~L~Ls~N~Ls--g~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFT--YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCCCC--GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCcCC--CCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 566777777777777765 3 56554 23677777777777765533333466667777777
Q ss_pred ecCCCC-Cee--ecchh------hccCCCCcEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031 68 LTGHKK-LTS--LPSTL------FRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 68 l~~~n~-~~~--~~~~~------~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
++ +|. ++. +|... +..+++|+.+++++|.++.+|. ..++.+++|+.|++++|.++.+|
T Consensus 522 Ls-~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp 589 (876)
T 4ecn_A 522 IA-CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE 589 (876)
T ss_dssp CT-TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC
T ss_pred Cc-CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch
Confidence 77 665 553 44321 1122366666666666666665 22456666666666666665544
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=1.5e-16 Score=96.44 Aligned_cols=111 Identities=18% Similarity=0.236 Sum_probs=94.3
Q ss_pred hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 85 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~ 85 (127)
.|..+++|+.|++++|.+. .+| .+..++.|+.+++++|.++.++.. +..+++|+.++++ +|.+..++. +..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~--~l~--~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~-~N~l~~l~~--~~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE--KIS--SLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWIS-YNQIASLSG--IEKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEES--CCC--CHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEE-EEECCCHHH--HHHH
T ss_pred HHhcCCCCCEEECCCCCCc--ccc--ccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECc-CCcCCcCCc--cccC
Confidence 6788999999999999876 777 568899999999999999988763 4556889999999 999988763 5678
Q ss_pred CCCcEEEecCccccccCh-hhhcCCccccEEeccCCcccc
Q psy8031 86 KKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 86 ~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~ 124 (127)
++|+.+++++|.++.++. ..+..+++|+.+++++|++..
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 899999999999998765 456889999999999998754
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=1.1e-13 Score=95.65 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=91.6
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeec-ch
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-ST 80 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~-~~ 80 (127)
||. |..+++|+.|++++|.+. .+|.. +..+++|+.|++++|+++.+| .+..+++|+.|+++ +|.++.+. +.
T Consensus 456 lp~--~~~l~~L~~L~Ls~N~l~--~lp~~-~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls-~N~l~~~~~p~ 527 (567)
T 1dce_A 456 LCH--LEQLLLVTHLDLSHNRLR--ALPPA-LAALRCLEVLQASDNALENVD--GVANLPRLQELLLC-NNRLQQSAAIQ 527 (567)
T ss_dssp CCC--GGGGTTCCEEECCSSCCC--CCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC-SSCCCSSSTTG
T ss_pred CcC--ccccccCcEeecCccccc--ccchh-hhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC-CCCCCCCCCcH
Confidence 454 788999999999999987 88875 589999999999999999987 48889999999999 99999985 55
Q ss_pred hhccCCCCcEEEecCccccccChh---hhcCCccccEEec
Q psy8031 81 LFRDCKKLVKLELQRNKLKYLPEN---LFESLKELYTLNL 117 (127)
Q Consensus 81 ~~~~~~~l~~l~l~~n~~~~~~~~---~~~~~~~l~~l~l 117 (127)
.+..+++|+.+++++|.++.+++. ++..+++|+.|++
T Consensus 528 ~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 578899999999999999877653 3344678888753
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.48 E-value=1.9e-13 Score=92.25 Aligned_cols=105 Identities=25% Similarity=0.251 Sum_probs=63.9
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
+..+++|+.|++++|.+. .+| .+..++.|+++++++|+++.++ +..+++|+.++++ +|.++.++ +..++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~--~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls-~N~l~~~~---~~~l~ 106 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSIT--DMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACD-SNKLTNLD---VTPLT 106 (457)
T ss_dssp HHHHTTCCEEECCSSCCC--CCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECC-SSCCSCCC---CTTCT
T ss_pred hhHcCCCCEEEccCCCcc--cCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECc-CCCCceee---cCCCC
Confidence 344566667777776654 554 2456666666666666666653 4556666666666 66666553 44556
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
+|+.+++++|.++.++ ++.+++|+.+++++|.++.+
T Consensus 107 ~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp TCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC
T ss_pred cCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee
Confidence 6666666666666554 35566666666666665543
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=3.3e-13 Score=89.75 Aligned_cols=95 Identities=13% Similarity=0.190 Sum_probs=56.3
Q ss_pred ccCccccCCCCCCcEEEecCCccc-----ccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCcccccc
Q psy8031 27 ELPSGLFANLPLLNTVILGESSIA-----ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL 101 (127)
Q Consensus 27 ~~~~~~~~~~~~l~~l~l~~n~~~-----~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~ 101 (127)
.++.++|.++.+|+.+.+.++.+. .++..+|.++++|+.+.++ . .+..++..+|.+|.+|+.+.+..+ ++.+
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 455555566666666666555443 4555556666666666655 3 255666666666666666666433 5566
Q ss_pred ChhhhcCCccccEEeccCCccccc
Q psy8031 102 PENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 102 ~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
+..+|.++ +|+.+++.+|.+..+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBC
T ss_pred cHHhCCCC-CCCEEEEcCCCCccc
Confidence 66666666 666666666655443
No 121
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=5e-13 Score=90.20 Aligned_cols=83 Identities=20% Similarity=0.345 Sum_probs=35.7
Q ss_pred CCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccE
Q psy8031 35 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 114 (127)
Q Consensus 35 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~ 114 (127)
.++.|+.+++++|+++.+++ +..+++|+.++++ +|.+..+++ +..+++|+.+++++|.++.++. +..+++|+.
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~-~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 357 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLY-FNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINW 357 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC-SSCCSCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCccCeEEcCCCcccCchh--hcCCCCCCEEECc-CCcCCCchh--hccCccCCEeECCCCccCCchh--hccCCCCCE
Confidence 33334444444443333322 2333444444444 444443332 2334444445554444444421 344555555
Q ss_pred EeccCCcccc
Q psy8031 115 LNLKNNQLEN 124 (127)
Q Consensus 115 l~l~~n~i~~ 124 (127)
+++++|.++.
T Consensus 358 L~l~~n~l~~ 367 (466)
T 1o6v_A 358 LSAGHNQISD 367 (466)
T ss_dssp EECCSSCCCB
T ss_pred EeCCCCccCc
Confidence 5555555443
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=8.1e-14 Score=98.61 Aligned_cols=96 Identities=22% Similarity=0.346 Sum_probs=81.2
Q ss_pred cCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhc
Q psy8031 28 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE 107 (127)
Q Consensus 28 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 107 (127)
+++..|..+..|+.|++++|.+..++...| .+++|+.|+++ +|.+..+|.. |..+.+|+.|++++|.++.+|.. |+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp~~-~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLN-GNSLTELPAE-IKNLSNLRVLDLSHNRLTSLPAE-LG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCT-TSCCSCCCGG-GGGGTTCCEEECTTSCCSSCCSS-GG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEee-CCcCcccChh-hhCCCCCCEEeCcCCcCCccChh-hc
Confidence 456677889999999999999999998766 68999999999 9999988865 57899999999999999999887 58
Q ss_pred CCccccEEeccCCcccccCC
Q psy8031 108 SLKELYTLNLKNNQLENITR 127 (127)
Q Consensus 108 ~~~~l~~l~l~~n~i~~~~~ 127 (127)
.+++|+.|++++|.++.+|+
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~ 310 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPW 310 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCS
T ss_pred CCCCCCEEECCCCCCCccCh
Confidence 99999999999999998874
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.47 E-value=7.2e-13 Score=89.42 Aligned_cols=107 Identities=23% Similarity=0.364 Sum_probs=49.7
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
+..+++|+.|++++|.+. .+++ +..++.|+.+++++|.++.+++ +..+++|+.++++ +|.+..+++ +..++
T Consensus 239 l~~l~~L~~L~l~~n~l~--~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~-~n~l~~~~~--~~~l~ 309 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQIS--NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN-ENQLEDISP--ISNLK 309 (466)
T ss_dssp GGGCTTCSEEECCSSCCC--CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC-SSCCSCCGG--GGGCT
T ss_pred hhcCCCCCEEECCCCccc--cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC-CCcccCchh--hcCCC
Confidence 344445555555555443 3332 3444555555555555444433 3344455555555 444444433 33444
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
+|+.+++++|.++.++. +..+++|+.+++++|+++.
T Consensus 310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 55555555554444433 2344455555555554443
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=7.8e-13 Score=91.36 Aligned_cols=76 Identities=26% Similarity=0.408 Sum_probs=31.6
Q ss_pred CCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEec
Q psy8031 38 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL 117 (127)
Q Consensus 38 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l 117 (127)
+|+.|++++|.++.++. .+++|+.|+++ +|.++.++. .+++|+.+++++|.++.+|. |. ++|+.|++
T Consensus 121 ~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls-~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE----LPALLEYINAD-NNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSCCCC----CCTTCCEEECC-SSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEEC
T ss_pred CCCEEECCCCcCCCCCC----cCccccEEeCC-CCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEEC
Confidence 34444444444443333 13344444444 444443332 12344444444444444443 22 44444444
Q ss_pred cCCcccccC
Q psy8031 118 KNNQLENIT 126 (127)
Q Consensus 118 ~~n~i~~~~ 126 (127)
++|.++.+|
T Consensus 188 s~N~L~~lp 196 (571)
T 3cvr_A 188 STNLLESLP 196 (571)
T ss_dssp CSSCCSSCC
T ss_pred cCCCCCchh
Confidence 444444443
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=4e-13 Score=89.31 Aligned_cols=116 Identities=17% Similarity=0.341 Sum_probs=88.1
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCe-----e
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT-----S 76 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~-----~ 76 (127)
|+.++|.+|.+|+.+.+..+ +. .++.++|.+ ..|+.+.+ .+.++.++..+|.++.+|+.+.+. .+.+. .
T Consensus 217 I~~~aF~~~~~L~~l~l~~~-l~--~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~-~~~~~~~~~~~ 290 (401)
T 4fdw_A 217 IGSQAFLKTSQLKTIEIPEN-VS--TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTY-GSTFNDDPEAM 290 (401)
T ss_dssp ECTTTTTTCTTCCCEECCTT-CC--EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEE-SSCCCCCTTCE
T ss_pred ehhhHhhCCCCCCEEecCCC-cc--Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeC-CccccCCcccE
Confidence 46677777777777777764 33 677777776 66777777 456778888888888888888888 76655 6
Q ss_pred ecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 77 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 77 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
++..+|.+|.+|+.+.+. +.++.++..+|.+|.+|+.+.+..| ++.+
T Consensus 291 I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp ECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred ECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 888888888888888888 4588888888888888988888554 4443
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=7.1e-13 Score=91.56 Aligned_cols=99 Identities=21% Similarity=0.333 Sum_probs=70.3
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCC-
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL- 88 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l- 88 (127)
+++|+.|++++|.+. .+|. .+++|+.|++++|.++.+|. |. ++|+.|+++ +|.++.+|. +.. +|
T Consensus 139 l~~L~~L~Ls~N~l~--~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls-~N~L~~lp~--~~~--~L~ 203 (571)
T 3cvr_A 139 PALLEYINADNNQLT--MLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVS-TNLLESLPA--VPV--RNH 203 (571)
T ss_dssp CTTCCEEECCSSCCS--CCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECC-SSCCSSCCC--CC------
T ss_pred CccccEEeCCCCccC--cCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECc-CCCCCchhh--HHH--hhh
Confidence 556677777777655 5554 35677777777777777666 43 678888888 888877766 332 56
Q ss_pred ------cEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031 89 ------VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 89 ------~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
+.+++++|.++.+|..++ .+++|+.|++++|+++.
T Consensus 204 ~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 204 HSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ----CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCH
T ss_pred cccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCC
Confidence 888888888888888764 48888888888888764
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.41 E-value=3e-12 Score=86.42 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=68.8
Q ss_pred hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 85 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~ 85 (127)
.|..+++|+.|++++|++. .++ +..++.|+++++++|.++.++ +..+++|+.++++ +|.++.++ +..+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~--~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~-~N~l~~l~---~~~l 126 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNIT--TLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD-TNKLTKLD---VSQN 126 (457)
T ss_dssp TGGGCTTCSEEECCSSCCS--CCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC-SSCCSCCC---CTTC
T ss_pred hhcccCCCCEEEccCCcCC--eEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEECC-CCcCCeec---CCCC
Confidence 3567888888888888865 564 577888888888888887764 5667788888888 77777664 4566
Q ss_pred CCCcEEEecCccccccChhhhcCCccccEEeccCC
Q psy8031 86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120 (127)
Q Consensus 86 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n 120 (127)
++|+.+++++|.++.++ ++.+++|+.+++++|
T Consensus 127 ~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 127 PLLTYLNCARNTLTEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp TTCCEEECTTSCCSCCC---CTTCTTCCEEECTTC
T ss_pred CcCCEEECCCCccceec---cccCCcCCEEECCCC
Confidence 77777777777776653 234444444444444
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=5.7e-13 Score=87.34 Aligned_cols=110 Identities=21% Similarity=0.255 Sum_probs=50.8
Q ss_pred ccceEEEecCCcCcccccCc----cccCCCC-CCcEEEecCCcccccChhhhcCC-----CCCcEEEecCCCCCeeecch
Q psy8031 11 KYLQVIKISYHKDSLKELPS----GLFANLP-LLNTVILGESSIAELPSDLFWNS-----TNITNIVLTGHKKLTSLPST 80 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~----~~~~~~~-~l~~l~l~~n~~~~~~~~~~~~~-----~~l~~l~l~~~n~~~~~~~~ 80 (127)
++|+.|++++|.+. ..+. ..|..++ .+++|++++|.++......+... ++|+.|+++ +|.+...+..
T Consensus 22 ~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l~~~~~~ 98 (362)
T 3goz_A 22 HGVTSLDLSLNNLY--SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS-GNFLSYKSSD 98 (362)
T ss_dssp TTCCEEECTTSCGG--GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSCGGGSCHH
T ss_pred CCceEEEccCCCCC--hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc-CCcCChHHHH
Confidence 33555555555543 4443 3444455 55555555555554433333322 455555555 5555443332
Q ss_pred hh----ccC-CCCcEEEecCccccccChhhhc----C-CccccEEeccCCccc
Q psy8031 81 LF----RDC-KKLVKLELQRNKLKYLPENLFE----S-LKELYTLNLKNNQLE 123 (127)
Q Consensus 81 ~~----~~~-~~l~~l~l~~n~~~~~~~~~~~----~-~~~l~~l~l~~n~i~ 123 (127)
.+ ... ++|+.+++++|.++..+...+. . .++|+.|++++|.++
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 11 112 4455555555555444432222 1 134555555555444
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.39 E-value=3.4e-12 Score=86.06 Aligned_cols=105 Identities=27% Similarity=0.392 Sum_probs=55.1
Q ss_pred hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~ 86 (127)
|..+++|+.|++++|++. .+|.. ..+++++++++|+++.++. +..+++|+.++++ +|.+..++.. ..
T Consensus 149 ~~~l~~L~~L~l~~N~l~--~lp~~----~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~-~N~l~~l~~~----~~ 215 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLK--KLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYAD-NNSLKKLPDL----PL 215 (454)
T ss_dssp CTTCTTCCEEECCSSCCS--CCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECC-SSCCSSCCCC----CT
T ss_pred cCCCCCCCEEECCCCcCc--ccCCC----cccccEEECcCCcCCcCcc--ccCCCCCCEEECC-CCcCCcCCCC----cC
Confidence 444555555555555543 34321 2345555555555554441 4455555555555 5555444321 13
Q ss_pred CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+++.+++++|.++.+|. ++.+++|+.+++++|.++.+|
T Consensus 216 ~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 216 SLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp TCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCC
T ss_pred cccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCccc
Confidence 55566666665555553 456666667777666666554
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.38 E-value=4.5e-12 Score=88.41 Aligned_cols=76 Identities=24% Similarity=0.302 Sum_probs=40.5
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~ 90 (127)
++|+.|++++|.+. .+|. .+++|++|++++|+++.++. .+++|+.|+++ +|.+..++. .+.+|+.
T Consensus 61 ~~L~~L~L~~N~l~--~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls-~N~l~~l~~----~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF-SNPLTHLPA----LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCS--CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC-SCCCCCCCC----CCTTCCE
T ss_pred CCCcEEEecCCCCC--CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc-CCcCCCCCC----CCCCcCE
Confidence 45666666666654 5554 24566666666666665554 24555666666 555555443 1234444
Q ss_pred EEecCcccccc
Q psy8031 91 LELQRNKLKYL 101 (127)
Q Consensus 91 l~l~~n~~~~~ 101 (127)
+++++|.++.+
T Consensus 126 L~L~~N~l~~l 136 (622)
T 3g06_A 126 LWIFGNQLTSL 136 (622)
T ss_dssp EECCSSCCSCC
T ss_pred EECCCCCCCcC
Confidence 44444444443
No 131
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=1.2e-11 Score=81.94 Aligned_cols=113 Identities=21% Similarity=0.451 Sum_probs=97.2
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
|...+|.++..|+.+.+..+. . .+..++|..+..|+.+.+. +.++.++..+|.++.+|+.+.++ . .++.++..+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~-~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp-~-~v~~I~~~a 329 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSV-V--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP-E-GITQILDDA 329 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTC-C--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC-T-TCCEECTTT
T ss_pred cccceeeecccccEEeccccc-c--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC-C-cccEehHhH
Confidence 456789999999999998764 3 7888999999999999986 57888999999999999999998 5 488899999
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~ 121 (127)
|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+++.++.
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 999999999999654 788999889999999999998763
No 132
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.33 E-value=1.6e-11 Score=80.81 Aligned_cols=113 Identities=26% Similarity=0.356 Sum_probs=89.4
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
|+..+|.++..|+.+.+..+ +. .+...+|..+..++.+.+.. .++.++..+|.++.+|+.+.+. .+.++.++..+
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~-~~~i~~I~~~a 305 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMD-NSAIETLEPRV 305 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEEC-CTTCCEECTTT
T ss_pred EccccccCCccceEEEcCCC-cc--EeCccccceeehhccccccc-cceecccccccccccccccccc-ccccceehhhh
Confidence 45667788888888888765 33 78888888888888888854 5777787888888888888888 88888888888
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCC
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n 120 (127)
|.+|.+|+.+.+..+ ++.++..+|.+|.+|+.+.+..+
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 888888888888643 77788888888888888877543
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=2e-12 Score=84.71 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=60.9
Q ss_pred hhhcCCc-cceEEEecCCcCcccccCccccCCC-----CCCcEEEecCCcccccChhh----hcCC-CCCcEEEecCCCC
Q psy8031 5 DLFAEMK-YLQVIKISYHKDSLKELPSGLFANL-----PLLNTVILGESSIAELPSDL----FWNS-TNITNIVLTGHKK 73 (127)
Q Consensus 5 ~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~-----~~l~~l~l~~n~~~~~~~~~----~~~~-~~l~~l~l~~~n~ 73 (127)
.+|..++ +|+.|++++|.+. ......+..+ +.|++|++++|.++...... +... ++|+.|+++ +|.
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~ 120 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLG--FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-WND 120 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGG--GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSC
T ss_pred HHHHhCCCceeEEECcCCCCC--HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc-CCc
Confidence 4555666 6777777777654 4444333332 66677777776666554432 2223 566666666 666
Q ss_pred Ceeecchhhc----c-CCCCcEEEecCccccccChhh----hcCCc-cccEEeccCCcccc
Q psy8031 74 LTSLPSTLFR----D-CKKLVKLELQRNKLKYLPENL----FESLK-ELYTLNLKNNQLEN 124 (127)
Q Consensus 74 ~~~~~~~~~~----~-~~~l~~l~l~~n~~~~~~~~~----~~~~~-~l~~l~l~~n~i~~ 124 (127)
+...+...+. . ..+|+.+++++|.+++..... +...+ +|+.|++++|.++.
T Consensus 121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 6555443222 1 235666666666555322211 12232 55555555555543
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=2.2e-12 Score=85.12 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=79.5
Q ss_pred hhcCCccceEEEecCCcCcccc---cCccccCCCCCCcEEEecCCccc-----ccChhhhcCCCCCcEEEecCCCCCeee
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKE---LPSGLFANLPLLNTVILGESSIA-----ELPSDLFWNSTNITNIVLTGHKKLTSL 77 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~~~~~l~~l~l~~n~~~-----~~~~~~~~~~~~l~~l~l~~~n~~~~~ 77 (127)
.+..+++|+.|++++|.+.-.. +.+..+..++.|+.|++++|.++ .++. .+..+++|+.|+++ +|.+...
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~-~n~i~~~ 259 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLN-DCLLSAR 259 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECT-TCCCCHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECC-CCCCchh
Confidence 4556777888888888764111 22224467788888888888874 2333 45667888888888 8877654
Q ss_pred cc----hhhc--cCCCCcEEEecCccccc-----cChhhhcCCccccEEeccCCccccc
Q psy8031 78 PS----TLFR--DCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 78 ~~----~~~~--~~~~l~~l~l~~n~~~~-----~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
.. ..+. .+++|+.+++++|.++. ++..++.++++|+.|++++|+++..
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 11 2222 26778888888888876 6666556678888888888887653
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.27 E-value=5.2e-11 Score=83.10 Aligned_cols=98 Identities=23% Similarity=0.331 Sum_probs=79.4
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~ 90 (127)
.+++.|++++|.+. .+|..++ ++++.|++++|.++.++. .+++|+.|+++ +|.++.++. .+++|+.
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls-~N~l~~lp~----~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVS-GNQLTSLPV----LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEEC-SCCCSCCCC----CCTTCCE
T ss_pred CCCcEEEecCCCcC--ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcC-CCcCCcCCC----CCCCCCE
Confidence 35889999999987 8998763 789999999999998887 36899999999 999998876 4689999
Q ss_pred EEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126 (127)
Q Consensus 91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~ 126 (127)
+++++|.++.+|. .+++|+.|++++|.++.+|
T Consensus 106 L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp 137 (622)
T 3g06_A 106 LSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP 137 (622)
T ss_dssp EEECSCCCCCCCC----CCTTCCEEECCSSCCSCCC
T ss_pred EECcCCcCCCCCC----CCCCcCEEECCCCCCCcCC
Confidence 9999999998876 2345566666666555544
No 136
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.26 E-value=4.5e-11 Score=80.65 Aligned_cols=81 Identities=27% Similarity=0.396 Sum_probs=42.8
Q ss_pred CCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEe
Q psy8031 37 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116 (127)
Q Consensus 37 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~ 116 (127)
+.++++++++|+++.++ .|..+++|+.++++ +|.+..++.. ..+++.+++++|.++.+|. ++.+++|+.++
T Consensus 131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~-~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVD-NNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSSCC--CCTTCTTCCEEECC-SSCCSCCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCCCc--ccCCCCCCCEEECC-CCcCcccCCC----cccccEEECcCCcCCcCcc--ccCCCCCCEEE
Confidence 34555555555555554 15555556666665 5555554432 1355555555555555542 35555555555
Q ss_pred ccCCcccccC
Q psy8031 117 LKNNQLENIT 126 (127)
Q Consensus 117 l~~n~i~~~~ 126 (127)
+++|.++.+|
T Consensus 202 l~~N~l~~l~ 211 (454)
T 1jl5_A 202 ADNNSLKKLP 211 (454)
T ss_dssp CCSSCCSSCC
T ss_pred CCCCcCCcCC
Confidence 5555555443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=3.4e-14 Score=86.03 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=85.3
Q ss_pred CccceEEEecCCcCc-----ccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhcc
Q psy8031 10 MKYLQVIKISYHKDS-----LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~ 84 (127)
...++.++++.+.+. +..+|. .|..++.++++++++|.++.++ .+..+++|+.++++ +|.+..++.. +..
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~-~n~l~~l~~~-~~~ 91 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLG-RNLIKKIENL-DAV 91 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEE-EEEECSCSSH-HHH
T ss_pred cccccCcchheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECC-CCCcccccch-hhc
Confidence 344444444444442 223333 4588999999999999999987 47788999999999 9999988764 455
Q ss_pred CCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125 (127)
Q Consensus 85 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~ 125 (127)
+++|+.+++++|.++.++. +..+++|+.+++++|.++.+
T Consensus 92 ~~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~l~~N~i~~~ 130 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNW 130 (198)
T ss_dssp HHHCSEEEEEEEECCCHHH--HHHHHHSSEEEESEEECCCH
T ss_pred CCcCCEEECcCCcCCcCCc--cccCCCCCEEECCCCcCCch
Confidence 6899999999999998863 57889999999999998864
No 138
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.18 E-value=1.4e-11 Score=79.71 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=15.4
Q ss_pred cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCC
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES 47 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n 47 (127)
..+++|+.|++++|.+. ......+..+++|++|++++|
T Consensus 115 ~~~~~L~~L~L~~~~l~--~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLS--DPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp TTBCCCSEEECTTCBCC--HHHHHHHTTCTTCSEEECTTC
T ss_pred hhCCCCCEEeCcCcccC--HHHHHHHhcCCCCCEEECCCC
Confidence 34444444444444432 222222333444444444444
No 139
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.16 E-value=1.5e-11 Score=81.10 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=7.0
Q ss_pred cCCccceEEEecCCcC
Q psy8031 8 AEMKYLQVIKISYHKD 23 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~ 23 (127)
..+++|+.|++++|.+
T Consensus 91 ~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAF 106 (386)
T ss_dssp TTCTTCCEEECCSCCC
T ss_pred hhCCcccEEECCCCcC
Confidence 3344444444444443
No 140
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.15 E-value=1.5e-10 Score=76.22 Aligned_cols=104 Identities=17% Similarity=0.338 Sum_probs=91.7
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
|+..+|.++..++.+.+..+ +. .++..+|.++.+|+.+.+.++.++.+...+|.++.+|+.+.++ .+ ++.++..+
T Consensus 254 I~~~aF~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp-~~-l~~I~~~a 328 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP-TA-LKTIQVYA 328 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC-TT-CCEECTTT
T ss_pred eCccccceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC-cc-ccEEHHHH
Confidence 56789999999999999765 44 8999999999999999999999999999999999999999998 54 88999999
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCcc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKE 111 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~ 111 (127)
|.+|.+|+.+.+..+ ++.+...+|.++..
T Consensus 329 F~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 329 FKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred hhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 999999999988654 78888888888753
No 141
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.14 E-value=4.3e-11 Score=77.44 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=70.2
Q ss_pred CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCC-CCeee-cchhhccCC
Q psy8031 9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK-KLTSL-PSTLFRDCK 86 (127)
Q Consensus 9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n-~~~~~-~~~~~~~~~ 86 (127)
.+++|+.|++++|.+....++ ..+..+++|+++++++|.++......+..+++|+.|+++ ++ .++.. .+..+..++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~-~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS-GCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT-TCBSCCHHHHHHHHHHCT
T ss_pred cCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC-CCCCCCHHHHHHHHhcCC
Confidence 467777777777765411133 344677778888887777764444446667778888887 66 55531 122345677
Q ss_pred CCcEEEecCc-cccc--cChhhhcCCc-cccEEeccCCc
Q psy8031 87 KLVKLELQRN-KLKY--LPENLFESLK-ELYTLNLKNNQ 121 (127)
Q Consensus 87 ~l~~l~l~~n-~~~~--~~~~~~~~~~-~l~~l~l~~n~ 121 (127)
+|+.+++++| .++. ++.. +..++ +|+.|++++|.
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCG
T ss_pred CCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCc
Confidence 7888888877 7764 3333 46677 78888887773
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.14 E-value=2e-10 Score=76.06 Aligned_cols=112 Identities=22% Similarity=0.371 Sum_probs=87.0
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
|+.++|.++..|+.+.+... +. .++.++|.++.+|+.+.+.. .++.+...+|.++.+|+.+.++ .+ +..++..+
T Consensus 279 I~~~aF~~c~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip-~s-v~~I~~~a 352 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSSR-IT--ELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIP-SS-VTKIPESA 352 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEEC-TT-CCBCCGGG
T ss_pred ecCcccccccccccccCCCc-cc--ccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEEC-cc-cCEEhHhH
Confidence 56789999999999999754 44 89999999999999999976 5889999999999999999998 55 88899999
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i 122 (127)
|.+|.+|+.+.+.++... + ..|..+..|+.+.+..|.+
T Consensus 353 F~~C~~L~~i~~~~~~~~-~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 353 FSNCTALNNIEYSGSRSQ-W--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GTTCTTCCEEEESSCHHH-H--HTCBCCCCC----------
T ss_pred hhCCCCCCEEEECCceee-h--hhhhccCCCCEEEeCCCCE
Confidence 999999999999987533 2 2356778888888876643
No 143
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.12 E-value=8.7e-11 Score=78.89 Aligned_cols=113 Identities=13% Similarity=0.185 Sum_probs=48.7
Q ss_pred hcCCccceEEEecCCcCccccc-CccccCCCC----CCcEEEecCCcccccC----hhhhcCCCCCcEEEecCCCCCeee
Q psy8031 7 FAEMKYLQVIKISYHKDSLKEL-PSGLFANLP----LLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLTSL 77 (127)
Q Consensus 7 ~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~~----~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~ 77 (127)
+..+++|+.|++++|.+. .. +..++..+. .++++++++|.++... +..+..+++|+.++++ +|.+...
T Consensus 52 l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls-~n~i~~~ 128 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS-DNLLGDA 128 (461)
T ss_dssp HHTCTTCCEEECTTCCCH--HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECC-SSBCHHH
T ss_pred HHhCCCcCEEeCCCCcCC--hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECC-CCcCchH
Confidence 444555555555555543 21 111222233 4555555555555211 2334455555555555 5554422
Q ss_pred cchhh-----ccCCCCcEEEecCccccccC----hhhhcCCccccEEeccCCcc
Q psy8031 78 PSTLF-----RDCKKLVKLELQRNKLKYLP----ENLFESLKELYTLNLKNNQL 122 (127)
Q Consensus 78 ~~~~~-----~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~n~i 122 (127)
....+ ...++|+.+++++|.++... ...+..+++|+.+++++|.+
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 11111 11234555555555444321 11123344555555555544
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.11 E-value=3.2e-10 Score=75.10 Aligned_cols=89 Identities=21% Similarity=0.335 Sum_probs=58.9
Q ss_pred cCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhc
Q psy8031 28 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE 107 (127)
Q Consensus 28 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 107 (127)
++...|..+..|+.+.+.. .++.+...+|.++.+|+.+.++ .+ ++.++..+|.+|.+|+.+.+..+ ++.++..+|.
T Consensus 288 i~~~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp-~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLP-YL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp ECTTTTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCC-TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred ecccccccccccccccccc-ccceechhhhcCCCCCCEEEeC-Cc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 3444555566666666654 3666666677777777777776 43 66777777777777777777655 6667777777
Q ss_pred CCccccEEeccCC
Q psy8031 108 SLKELYTLNLKNN 120 (127)
Q Consensus 108 ~~~~l~~l~l~~n 120 (127)
+|.+|+.+++..+
T Consensus 364 ~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 364 GCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEEEEEGG
T ss_pred CCCCCCEEEECCC
Confidence 7777777776543
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.10 E-value=3.2e-10 Score=75.11 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=89.9
Q ss_pred CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81 (127)
Q Consensus 2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~ 81 (127)
|+..+|.++.+|+.+.+..+ +. .++..+|.++.+|+.+++.. .++.+...+|.++.+|+.+.++ .+ +..++..+
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp-~~-l~~I~~~a 361 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFP-LS-LRKIGANA 361 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCC-TT-CCEECTTT
T ss_pred eccccccccccccccccccc-cc--eechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEEC-cc-ccEehHHH
Confidence 56778999999999999865 44 89999999999999999975 5889999999999999999998 66 88999999
Q ss_pred hccCCCCcEEEecCccccccChhhhcCCccccEE
Q psy8031 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 115 (127)
Q Consensus 82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l 115 (127)
|.+|.+|+.+.+..+ +..+. ..|.++++|+.+
T Consensus 362 F~~C~~L~~i~lp~~-~~~~~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 362 FQGCINLKKVELPKR-LEQYR-YDFEDTTKFKWI 393 (394)
T ss_dssp BTTCTTCCEEEEEGG-GGGGG-GGBCTTCEEEEE
T ss_pred hhCCCCCCEEEECCC-CEEhh-heecCCCCCcEE
Confidence 999999999999765 44443 347888888765
No 146
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.09 E-value=2.2e-11 Score=81.75 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=34.6
Q ss_pred CCCCCcEEEecCCCCCeeecchhhc-----cCCCCcEEEecCcccc-----ccChhhhcCCccccEEeccCCcccc
Q psy8031 59 NSTNITNIVLTGHKKLTSLPSTLFR-----DCKKLVKLELQRNKLK-----YLPENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 59 ~~~~l~~l~l~~~n~~~~~~~~~~~-----~~~~l~~l~l~~n~~~-----~~~~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
.+++|+.++++ +|.+.......+. ..++|+.+++++|.++ .++.. +..+++|+.+++++|+++.
T Consensus 339 ~~~~L~~L~Ls-~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 339 QNRFLLELQIS-NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HCSSCCEEECC-SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCCCCCEEECCSSSCCH
T ss_pred hCCCccEEEcc-CCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-HHhCCCccEEECCCCCCCH
Confidence 34566666666 6555543222121 1346666666666665 33333 3456667777777766553
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=76.91 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=59.3
Q ss_pred ccceEEEecCCcCcccccCcccc-----CCCCCCcEEEecCCcccccChh----hhcCCCCCcEEEecCCCCCeeec---
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLF-----ANLPLLNTVILGESSIAELPSD----LFWNSTNITNIVLTGHKKLTSLP--- 78 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~n~~~~~~~~----~~~~~~~l~~l~l~~~n~~~~~~--- 78 (127)
.+|+.|++++|.+. ......+ ...+.|+.|++++|.++..... .+...++|+.|+++ +|.+...+
T Consensus 126 ~~L~~L~Ls~n~l~--~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls-~N~l~~~g~~~ 202 (372)
T 3un9_A 126 LRARKLGLQLNSLG--PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL-HTGLGDEGLEL 202 (372)
T ss_dssp HTEEEEECCSSCCC--HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT-TSSCHHHHHHH
T ss_pred HhccHhhcCCCCCC--HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC-CCCCCcHHHHH
Confidence 34555555555543 2222222 2345667777777766542211 22445667777777 66665432
Q ss_pred -chhhccCCCCcEEEecCccccccChh----hhcCCccccEEeccCCcccc
Q psy8031 79 -STLFRDCKKLVKLELQRNKLKYLPEN----LFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 79 -~~~~~~~~~l~~l~l~~n~~~~~~~~----~~~~~~~l~~l~l~~n~i~~ 124 (127)
...+...++|+.+++++|.+++.... .+...+.|+.|++++|.|+.
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 12233455677777777776643221 12344667777777776653
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.95 E-value=3e-10 Score=74.90 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=75.0
Q ss_pred ccceEEEecCCcCcccccC-ccccCCCCCCcEEEecCCcccccChhhh-----cCCCCCcEEEecCCCCCeeecchh---
Q psy8031 11 KYLQVIKISYHKDSLKELP-SGLFANLPLLNTVILGESSIAELPSDLF-----WNSTNITNIVLTGHKKLTSLPSTL--- 81 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~-~~~~~~~~~l~~l~l~~n~~~~~~~~~~-----~~~~~l~~l~l~~~n~~~~~~~~~--- 81 (127)
+.|+.|++++|.+. ... ..+...+.+++.|++++|.++......+ ...+.|+.|+++ +|.++......
T Consensus 101 ~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~ 177 (372)
T 3un9_A 101 HALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS-NNPLTAAGVAVLME 177 (372)
T ss_dssp SCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECC-SSCCHHHHHHHHHH
T ss_pred CCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCC-CCCCChHHHHHHHH
Confidence 67888888888764 221 1222345678888888888875443322 345788999999 88886533222
Q ss_pred -hccCCCCcEEEecCccccccC----hhhhcCCccccEEeccCCcccc
Q psy8031 82 -FRDCKKLVKLELQRNKLKYLP----ENLFESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 82 -~~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~n~i~~ 124 (127)
+...++|+.+++++|.+++.. ...+...+.|+.|++++|.|+.
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 245678999999999887543 1224566789999999998864
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=1.1e-08 Score=61.18 Aligned_cols=117 Identities=9% Similarity=0.102 Sum_probs=83.0
Q ss_pred hhhcCCccceEEEecCC-cCccc---ccCccccCCCCCCcEEEecCCcccccC----hhhhcCCCCCcEEEecCCCCCee
Q psy8031 5 DLFAEMKYLQVIKISYH-KDSLK---ELPSGLFANLPLLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLTS 76 (127)
Q Consensus 5 ~~~~~~~~l~~l~l~~~-~~~~~---~~~~~~~~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~ 76 (127)
.++...+.|+.|++++| .+... .+. ..+...+.+++|++++|.+.... ...+...++|+.|+++ +|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~-~N~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE-SNFISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC-SSCCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc-CCcCCH
Confidence 35677899999999999 76411 112 23356789999999999988532 1234456789999999 998875
Q ss_pred ecc----hhhccCCCCcEEEe--cCccccccCh----hhhcCCccccEEeccCCccc
Q psy8031 77 LPS----TLFRDCKKLVKLEL--QRNKLKYLPE----NLFESLKELYTLNLKNNQLE 123 (127)
Q Consensus 77 ~~~----~~~~~~~~l~~l~l--~~n~~~~~~~----~~~~~~~~l~~l~l~~n~i~ 123 (127)
-.. ..+...+.|+.+++ ++|.+.+-.. ..+...+.|+.|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 321 22345678999999 8898874321 22345678999999999875
No 150
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.49 E-value=1.9e-07 Score=64.49 Aligned_cols=90 Identities=17% Similarity=0.084 Sum_probs=54.6
Q ss_pred CCCCCCcEEEecCCc--ccccC-hhhhcCCCCCcEEEecCCCCCeeec-chhhccCCCCcEEEecCcccccc-ChhhhcC
Q psy8031 34 ANLPLLNTVILGESS--IAELP-SDLFWNSTNITNIVLTGHKKLTSLP-STLFRDCKKLVKLELQRNKLKYL-PENLFES 108 (127)
Q Consensus 34 ~~~~~l~~l~l~~n~--~~~~~-~~~~~~~~~l~~l~l~~~n~~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~~ 108 (127)
..+++|++++++.+. ++... ......+++|+.|+++ ++.++... +..+.++++|+.+++++|.++.. .......
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG-YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC-SCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc-CCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 446667777765322 33221 1222346778888888 77765422 22335677888888888876532 1222356
Q ss_pred CccccEEeccCCcccc
Q psy8031 109 LKELYTLNLKNNQLEN 124 (127)
Q Consensus 109 ~~~l~~l~l~~n~i~~ 124 (127)
+++|+.|++++|+++.
T Consensus 512 l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASM 527 (592)
T ss_dssp CSSCCEEEEESCBCCT
T ss_pred cCccCeeECcCCcCCH
Confidence 7888888888887764
No 151
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.47 E-value=9.4e-08 Score=66.04 Aligned_cols=65 Identities=9% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCccceEEEecCCcCcccccCc----cccCCCCCCcEEEecCCcccccCh----hhhcCCCCCcEEEecCCCCCee
Q psy8031 9 EMKYLQVIKISYHKDSLKELPS----GLFANLPLLNTVILGESSIAELPS----DLFWNSTNITNIVLTGHKKLTS 76 (127)
Q Consensus 9 ~~~~l~~l~l~~~~~~~~~~~~----~~~~~~~~l~~l~l~~n~~~~~~~----~~~~~~~~l~~l~l~~~n~~~~ 76 (127)
.+++|+.|++++|.+. .... .....+++|+.|++++|.++.+.. ..+..+++|+.|+++ ++.+..
T Consensus 162 ~~~~L~~L~L~~~~~~--~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~-~~~~~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFS--EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-DFEILE 234 (592)
T ss_dssp HCTTCSEEECTTCEEE--CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS-SCBGGG
T ss_pred hCCCCCEEECcccccc--CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc-CccHHH
Confidence 4566666666666542 2211 122345556666666655542221 123345566666666 554433
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.44 E-value=1.9e-07 Score=64.45 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=53.6
Q ss_pred CCCCCCcEEEecCCcccccChhhhc-CCCCCcEEEecCCCCCeeecchhh-ccCCCCcEEEecCccccccCh-hhhcCCc
Q psy8031 34 ANLPLLNTVILGESSIAELPSDLFW-NSTNITNIVLTGHKKLTSLPSTLF-RDCKKLVKLELQRNKLKYLPE-NLFESLK 110 (127)
Q Consensus 34 ~~~~~l~~l~l~~n~~~~~~~~~~~-~~~~l~~l~l~~~n~~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~-~~~~~~~ 110 (127)
..+++|+.|++++ .++......+. .+++|+.|+++ +|.++......+ .++++|+.+++++|.+++... .....++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~-~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVA-FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEE-SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeecc-CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 4566677777755 44432222222 26778888888 777654322222 457788888888887753322 2234567
Q ss_pred cccEEeccCCccc
Q psy8031 111 ELYTLNLKNNQLE 123 (127)
Q Consensus 111 ~l~~l~l~~n~i~ 123 (127)
+|+.|++++|+++
T Consensus 507 ~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 507 TMRSLWMSSCSVS 519 (594)
T ss_dssp GSSEEEEESSCCB
T ss_pred CCCEEeeeCCCCC
Confidence 8888888888763
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.37 E-value=2.9e-07 Score=63.58 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=6.4
Q ss_pred CccccEEeccCC
Q psy8031 109 LKELYTLNLKNN 120 (127)
Q Consensus 109 ~~~l~~l~l~~n 120 (127)
+++|+.|++++|
T Consensus 210 ~~~L~~L~L~~~ 221 (594)
T 2p1m_B 210 CPNLKSLKLNRA 221 (594)
T ss_dssp CTTCCEEECCTT
T ss_pred CCCCcEEecCCC
Confidence 455555555544
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=5.8e-07 Score=56.78 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=47.5
Q ss_pred CCCCCcEEEecCCcccccCh--hhhcCCCCCcEEEecCCCCCeeecc-hhhccCCCCcEEEecCccccc-cC------hh
Q psy8031 35 NLPLLNTVILGESSIAELPS--DLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLVKLELQRNKLKY-LP------EN 104 (127)
Q Consensus 35 ~~~~l~~l~l~~n~~~~~~~--~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~l~~l~l~~n~~~~-~~------~~ 104 (127)
.++.|+.|++++|+++.++. ..+..+++|+.|+++ +|.+..+.. ..+.++ +|+.|++++|.+.. ++ ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls-~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS-GNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECT-TSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECC-CCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 36677777777777776542 234456777777777 777766522 122223 67777777777652 32 12
Q ss_pred hhcCCccccEEe
Q psy8031 105 LFESLKELYTLN 116 (127)
Q Consensus 105 ~~~~~~~l~~l~ 116 (127)
++..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 344556666665
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=3.4e-07 Score=57.82 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=60.0
Q ss_pred cCCccceEEEecCCcCcccccCc--cccCCCCCCcEEEecCCcccccCh-hhhcCCCCCcEEEecCCCCCee-ec-----
Q psy8031 8 AEMKYLQVIKISYHKDSLKELPS--GLFANLPLLNTVILGESSIAELPS-DLFWNSTNITNIVLTGHKKLTS-LP----- 78 (127)
Q Consensus 8 ~~~~~l~~l~l~~~~~~~~~~~~--~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~~n~~~~-~~----- 78 (127)
.+++.|+.|++++|.+. .++. ..+..+++|+.|++++|+++.+.. ..+..+ .|+.|.+. +|.+.. ++
T Consensus 167 ~~l~~L~~L~Ls~N~l~--~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~-~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLY--RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLD-GNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCC--CCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECT-TSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCC--CCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEcc-CCcCccccCcchhH
Confidence 45789999999999986 5543 445689999999999999997632 224444 89999999 998863 33
Q ss_pred -chhhccCCCCcEEE
Q psy8031 79 -STLFRDCKKLVKLE 92 (127)
Q Consensus 79 -~~~~~~~~~l~~l~ 92 (127)
...+..+++|+.|+
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 13345677887765
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=1.1e-05 Score=53.17 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=21.1
Q ss_pred hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCccc
Q psy8031 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 50 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~ 50 (127)
++..+++|+.|.++++.-. .+++ +. +++|+.|++..+.++
T Consensus 167 ll~~~P~L~~L~L~g~~~l--~l~~--~~-~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL--SIGK--KP-RPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC--BCCS--CB-CTTCSEEEEECSBCC
T ss_pred HHhcCCCCcEEEEeCCCCc--eecc--cc-CCCCcEEEEecCCCC
Confidence 4456677777777776311 2332 12 455555555555443
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=4.4e-06 Score=49.55 Aligned_cols=82 Identities=12% Similarity=0.065 Sum_probs=36.8
Q ss_pred CCcEEEecCCcccccChhhhcCCCCCcEEEecCCC-CCeeecchhhcc----CCCCcEEEecCc-cccccChhhhcCCcc
Q psy8031 38 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK-KLTSLPSTLFRD----CKKLVKLELQRN-KLKYLPENLFESLKE 111 (127)
Q Consensus 38 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n-~~~~~~~~~~~~----~~~l~~l~l~~n-~~~~~~~~~~~~~~~ 111 (127)
.|+.++++++.++...-..+..+++|+.|+++ .+ .++.-.-..... +++|+.|+++++ .+++-.-..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~-~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLC-KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEE-SCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeC-CCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 35555555555544332233445555555555 33 333221111111 124555555554 354333333344555
Q ss_pred ccEEeccCC
Q psy8031 112 LYTLNLKNN 120 (127)
Q Consensus 112 l~~l~l~~n 120 (127)
|+.|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=6.9e-06 Score=48.70 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=64.1
Q ss_pred ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCc-ccccChhhhcCC----CCCcEEEecCCC-CCeeecchhhcc
Q psy8031 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS-IAELPSDLFWNS----TNITNIVLTGHK-KLTSLPSTLFRD 84 (127)
Q Consensus 11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~~~----~~l~~l~l~~~n-~~~~~~~~~~~~ 84 (127)
-.|+.|++++|.+. ...-..+.+++.|+.|++++|. ++.-.-..+... ++|+.|+++ .+ .++.-.-..+..
T Consensus 61 ~~L~~LDLs~~~It--d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls-~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIM--SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII-SCGNVTDKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCCCC--GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE-SCTTCCHHHHHHGGG
T ss_pred ceEeEEeCcCCCcc--HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC-CCCcCCHHHHHHHhc
Confidence 46999999999876 4443445789999999999984 775433334432 479999999 64 677654444567
Q ss_pred CCCCcEEEecCc-ccccc
Q psy8031 85 CKKLVKLELQRN-KLKYL 101 (127)
Q Consensus 85 ~~~l~~l~l~~n-~~~~~ 101 (127)
+++|+.|+++++ .+++.
T Consensus 138 ~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CTTCCEEEEESCTTCCCH
T ss_pred CCCCCEEECCCCCCCCch
Confidence 899999999987 46643
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.03 E-value=9.8e-06 Score=45.74 Aligned_cols=56 Identities=29% Similarity=0.427 Sum_probs=47.7
Q ss_pred cEEEecCCccc--ccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCcccc
Q psy8031 40 NTVILGESSIA--ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 99 (127)
Q Consensus 40 ~~l~l~~n~~~--~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~ 99 (127)
..++-+++.++ .+|... ..+++.|+++ +|.++.++...|..+.+|+.+++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLT-GNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECT-TSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECC-CCcCCccChhhhhhccccCEEEecCCCee
Confidence 47788888888 888642 3578999999 99999999999999999999999999875
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=1.2e-05 Score=53.00 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=70.8
Q ss_pred CccceEEEecCCcCcccccCccccCCCCCCcEEEecC--Cc------ccccChhhh--cCCCCCcEEEecCCCCCeeec-
Q psy8031 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE--SS------IAELPSDLF--WNSTNITNIVLTGHKKLTSLP- 78 (127)
Q Consensus 10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~--n~------~~~~~~~~~--~~~~~l~~l~l~~~n~~~~~~- 78 (127)
+++|+.|.+..+.+....+..-.-..+++|+.|+++. +. +..+.. .+ ..+++|+.|.+. ++.+..-.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~-~~~i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIV-DAEEQNVVV 269 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEE-SCTTHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCC-CCCCchHHH
Confidence 6789999999887641111111113688999999853 11 212211 12 246899999999 88776321
Q ss_pred chhh--ccCCCCcEEEecCccccccChhhh----cCCccccEEeccCCcccc
Q psy8031 79 STLF--RDCKKLVKLELQRNKLKYLPENLF----ESLKELYTLNLKNNQLEN 124 (127)
Q Consensus 79 ~~~~--~~~~~l~~l~l~~n~~~~~~~~~~----~~~~~l~~l~l~~n~i~~ 124 (127)
...+ ..+++|+.|+++.|.+++.....+ ..+++|+.|+++.|.++.
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 2222 135789999999998875322111 345789999999998763
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.98 E-value=1.1e-05 Score=48.15 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=66.8
Q ss_pred ccCCCCCCcEEEecCC-cccccC----hhhhcCCCCCcEEEecCCCCCeeecc----hhhccCCCCcEEEecCccccccC
Q psy8031 32 LFANLPLLNTVILGES-SIAELP----SDLFWNSTNITNIVLTGHKKLTSLPS----TLFRDCKKLVKLELQRNKLKYLP 102 (127)
Q Consensus 32 ~~~~~~~l~~l~l~~n-~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~~~----~~~~~~~~l~~l~l~~n~~~~~~ 102 (127)
.+...+.++.|++++| .+.... ...+...++++.|+++ .|.+..-.. ..+...+.|+.+++++|.+.+-.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls-~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-GTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-TSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc-CCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 4567889999999999 887432 2235567899999999 998874322 22334578999999999997532
Q ss_pred h----hhhcCCccccEEec--cCCcccc
Q psy8031 103 E----NLFESLKELYTLNL--KNNQLEN 124 (127)
Q Consensus 103 ~----~~~~~~~~l~~l~l--~~n~i~~ 124 (127)
. ..+...+.|+.|++ ++|.++.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 1 22355678999999 8898864
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.95 E-value=2.3e-05 Score=44.17 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=47.6
Q ss_pred eEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCe
Q psy8031 14 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 75 (127)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~ 75 (127)
..++.+++++....+|..+ ..+++.|++++|+++.++...|..+++|+.+++. +|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLG-ANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC-SSCCB
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEec-CCCee
Confidence 4678888875322677654 4569999999999999999999999999999999 88775
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=97.34 E-value=0.0006 Score=36.61 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=22.0
Q ss_pred ccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEec
Q psy8031 27 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69 (127)
Q Consensus 27 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~ 69 (127)
.+..++|.++..|+.+.+.. .++.|...+|.++.+|+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEEC
T ss_pred EecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEc
Confidence 45555555555555555543 3445555555555555555554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=0.0042 Score=37.48 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=71.6
Q ss_pred hhcCCccceEEEecCC-cCcccccC----ccccCCCCCCcEEEecCCcccccCh----hhhcCCCCCcEEEecCCCCCee
Q psy8031 6 LFAEMKYLQVIKISYH-KDSLKELP----SGLFANLPLLNTVILGESSIAELPS----DLFWNSTNITNIVLTGHKKLTS 76 (127)
Q Consensus 6 ~~~~~~~l~~l~l~~~-~~~~~~~~----~~~~~~~~~l~~l~l~~n~~~~~~~----~~~~~~~~l~~l~l~~~n~~~~ 76 (127)
+..+-+.|+.|+++++ ++. ... ...+..-+.++.|++++|++..... .++..-.+|+.|+++ .|.+..
T Consensus 36 ll~~n~~L~~L~L~~nn~ig--d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~-~N~Ig~ 112 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVS--KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE-SNFLTP 112 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSC--HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC-SSBCCH
T ss_pred HHhcCCCccEEECCCCCCCC--HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC-CCcCCH
Confidence 4455678999999885 653 211 2233556789999999999885322 234455789999999 998874
Q ss_pred ecch----hhccCCCCcEEEecCc---cccc-----cChhhhcCCccccEEeccCCcc
Q psy8031 77 LPST----LFRDCKKLVKLELQRN---KLKY-----LPENLFESLKELYTLNLKNNQL 122 (127)
Q Consensus 77 ~~~~----~~~~~~~l~~l~l~~n---~~~~-----~~~~~~~~~~~l~~l~l~~n~i 122 (127)
-.-. .+..-..|+.++++++ .+.. +-. ++..-+.|+.++++.|.+
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence 3322 1223356899999764 3332 211 223446788888887754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=96.73 E-value=0.0058 Score=32.70 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=36.4
Q ss_pred CCchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCccc
Q psy8031 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 50 (127)
Q Consensus 1 ~i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~ 50 (127)
+|...+|.+|..|+.+.|..+ +. .+..++|.++.+|+.+.+......
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~--~Ig~~aF~~C~~L~~i~~~~~~P~ 56 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IG--LLYDGMFSGCTALEKLILTGEDPS 56 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SS--CCCTTSSTTCTTCCCEEECCSCGG
T ss_pred EecHHHhcCCCCCcEEEcCCc-hh--eEcHHHHhccCCccEEEEcCCCCC
Confidence 367788888888888888876 23 788888888888888888765443
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.61 E-value=0.016 Score=34.90 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=59.5
Q ss_pred cCCCCCCcEEEecCC-ccccc----ChhhhcCCCCCcEEEecCCCCCeeecch----hhccCCCCcEEEecCccccccCh
Q psy8031 33 FANLPLLNTVILGES-SIAEL----PSDLFWNSTNITNIVLTGHKKLTSLPST----LFRDCKKLVKLELQRNKLKYLPE 103 (127)
Q Consensus 33 ~~~~~~l~~l~l~~n-~~~~~----~~~~~~~~~~l~~l~l~~~n~~~~~~~~----~~~~~~~l~~l~l~~n~~~~~~~ 103 (127)
...-+.|+.|+++++ ++..- -..++..-..|+.|+++ .|.+....-. ++..-+.|+.|+++.|.+.+-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~-~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA-NTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT-TSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc-CCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 345678999999985 77642 12345566889999999 9988743322 22334689999999999974322
Q ss_pred h----hhcCCccccEEeccCC
Q psy8031 104 N----LFESLKELYTLNLKNN 120 (127)
Q Consensus 104 ~----~~~~~~~l~~l~l~~n 120 (127)
. .+..-+.|+.|++++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 2 1233456999999765
Done!