RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8031
(127 letters)
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 44.1 bits (105), Expect = 1e-06
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 23 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
S+ + F+ L ++ L SS+ + S F+N +++T+I + LTS+ F
Sbjct: 20 SSVTSIGEYAFSGCTSLKSITLP-SSLTSIGSYAFYNCSSLTSITI--PSSLTSIGEYAF 76
Query: 83 RDCKKLVKLELQRNKLKYLPENLFE--SLKELY 113
+C L + + + L + F SLK +
Sbjct: 77 SNCSSLTSITIP-SNLTTIGSYAFSNCSLKSIT 108
Score = 34.4 bits (80), Expect = 0.004
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 24/102 (23%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
F+ L+ I + SL + S F N L ++ + SS+ + F N +++T+I
Sbjct: 30 FSGCTSLKSITLP---SSLTSIGSYAFYNCSSLTSITI-PSSLTSIGEYAFSNCSSLTSI 85
Query: 67 VL--------------------TGHKKLTSLPSTLFRDCKKL 88
+ T +T++ F +C L
Sbjct: 86 TIPSNLTTIGSYAFSNCSLKSITIPSSVTTIGDYAFSNCSSL 127
Score = 27.5 bits (62), Expect = 1.5
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 64
F+ L I I +L + S F+N L + I SS+ + F N +++
Sbjct: 76 FSNCSSLTSITIPS---NLTTIGSYAFSNCSLKSITI--PSSVTTIGDYAFSNCSSLK 128
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 39.8 bits (94), Expect = 1e-05
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+LT +P F+ L L+L N L + F L L +L+L N L
Sbjct: 11 RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 32.1 bits (74), Expect = 0.010
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
L L+L N+L +P+ F+ L L L+L N L +I+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISP 41
Score = 28.7 bits (65), Expect = 0.18
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 70
L +P G F LP L + L +++ + + F ++ ++ L+G
Sbjct: 11 RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 37.8 bits (87), Expect = 6e-04
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P++L E++YL V + +S++ LP+ L + + LN +S+ LP L
Sbjct: 277 LPENLPEELRYLSV-----YDNSIRTLPAHLPSGITHLNVQ---SNSLTALPETLPPG-- 326
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY-TLNLKNN 120
+ G LTSLP++L +L L++ +N++ LPE L ++ L + N N
Sbjct: 327 --LKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN 381
Query: 121 QLENI 125
EN+
Sbjct: 382 LPENL 386
Score = 32.7 bits (74), Expect = 0.032
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
LT++P+ + +++ L L N+LK LPENL ++K LY +NQL +I
Sbjct: 189 GLTTIPACI---PEQITTLILDNNELKSLPENLQGNIKTLYA---NSNQLTSI 235
Score = 32.4 bits (73), Expect = 0.053
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 14 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 73
Q+ + + LK LP L N+ T+ + + +P+ L + + +
Sbjct: 200 QITTLILDNNELKSLPENLQGNI---KTLYANSNQLTSIPATL----PDTIQEMELSINR 252
Query: 74 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+T LP L L L+L NK+ LPENL E EL L++ +N +
Sbjct: 253 ITELPERL---PSALQSLDLFHNKISCLPENLPE---ELRYLSVYDNSI 295
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 34.4 bits (79), Expect = 0.008
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 27 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86
ELPS F LPL+ + + +++ + W+ ++ + L +K LP F K
Sbjct: 419 ELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGS-K 475
Query: 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+L L+L RN+ SL EL L L N+L
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511
Score = 28.7 bits (64), Expect = 1.0
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 16/120 (13%)
Query: 9 EMKYLQVIKISYHKDSLKELPSGLFANLP------LLNTVILGESSIAELPSDLFWNSTN 62
+M LQ++ ++ +K F LP L + L + + + +
Sbjct: 450 DMPSLQMLSLARNK---------FFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L+ +K +P L CKKLV L+L N+L F + L L+L NQL
Sbjct: 501 LMQLKLSENKLSGEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559
Score = 26.7 bits (59), Expect = 3.9
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 59 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNL 117
NS+ + +I L+G + S +FR + + L N+L +P+++F + L LNL
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125
Query: 118 KNNQL 122
NN
Sbjct: 126 SNNNF 130
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 30.5 bits (70), Expect = 0.032
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L L+L N++ LP +L L TL+L N++ +++
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 32.1 bits (72), Expect = 0.065
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 17/103 (16%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
SL LPSGL + N + +S+ LPS+L ++++G++ LTSLP
Sbjct: 376 SLPALPSGLKELIVSGNRL----TSLPVLPSEL-------KELMVSGNR-LTSLPML--- 420
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L+ L + RN+L LPE+L L T+NL+ N L T
Sbjct: 421 -PSGLLSLSVYRNQLTRLPESLIH-LSSETTVNLEGNPLSERT 461
>gnl|CDD|130148 TIGR01076, sortase_fam, LPXTG-site transpeptidase (sortase)
family protein. This family includes Staphylococcus
aureus sortase, a transpeptidase that attaches surface
proteins by the Thr of an LPXTG motif to the cell wall.
It also includes a protein required for correct
assembly of an LPXTG-containing fimbrial protein, a set
of homologous proteins from Streptococcus pneumoniae,
in which LPXTG proteins are common. However, related
proteins are found in Bacillus subtilis and
Methanobacterium thermoautotrophicum, in which
LPXTG-mediated cell wall attachment is not known [Cell
envelope, Other, Protein fate, Protein and peptide
secretion and trafficking].
Length = 136
Score = 27.1 bits (60), Expect = 1.9
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 44 LGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90
LG LP T IV+TGH+ L +T+F + KL K
Sbjct: 27 LGHLEGTSLPVGG-----ENTRIVITGHRGLP--TATMFTNLDKLKK 66
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 27.2 bits (60), Expect = 2.3
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 32 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91
L +NL LN + L + I++LP ++ + + + + L S+L + K L L
Sbjct: 181 LLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNSIIELLSSL-SNLKNLSGL 237
Query: 92 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
EL NKL+ LPE++ +L L TL+L NNQ+ +I+
Sbjct: 238 ELSNNKLEDLPESI-GNLSNLETLDLSNNQISSIS 271
>gnl|CDD|218327 pfam04916, Phospholip_B, Phospholipase B. Phospholipase B (PLB)
catalyzes the hydrolytic cleavage of both acylester
bonds of glycerophospholipids. This family of PLB
enzymes has been identified in mammals, flies and
nematodes but not in yeast. In Drosophila this protein
was named LAMA for laminin ancestor since it is
expressed in the neuronal and glial precursors that
surround the lamina.
Length = 563
Score = 27.1 bits (60), Expect = 2.8
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 46 ESSIAELPSDLFWNSTNITNIVLTG----HKKLTSLPSTLFRDCKKLVKLELQ 94
E +A+ P D FW N+T L G ++K S F ++ +
Sbjct: 139 EQQVAKAPDDPFWRQVNLTVTQLDGLYDGYEKRASAAEIDFELFHPILMMNAA 191
>gnl|CDD|193251 pfam12775, AAA_7, P-loop containing dynein motor region D3. the
380 kDa motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules,
of which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This particular family is the D3 and is an ATP binding
site.
Length = 272
Score = 26.8 bits (59), Expect = 3.4
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL---QRNKLKYLPENLFESLKELYTLNL 117
+ I NI+LT H L S+ + L + LV L Q+ +LP ++K Y NL
Sbjct: 186 STIYNIILTQHLALGSVSAALQKSSPPLVDAALALHQKIATTFLP----TAIKFHYVFNL 241
Query: 118 KNNQLENI 125
++ L NI
Sbjct: 242 RD--LSNI 247
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 24.2 bits (54), Expect = 4.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 87 KLVKLELQRNKLKYLPENLFES 108
L +L+L N+L LP F+
Sbjct: 3 NLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 24.2 bits (54), Expect = 4.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 87 KLVKLELQRNKLKYLPENLFES 108
L +L+L N+L LP F+
Sbjct: 3 NLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|220744 pfam10421, OAS1_C, 2'-5'-oligoadenylate synthetase 1, domain 2,
C-terminus. This is the largely alpha-helical,
C-terminal half of 2'-5'-oligoadenylate synthetase 1,
being described as domain 2 of the enzyme and homologous
to a tandem ubiquitin repeat. It carries the region of
enzymic activity between 320 and 344 at the extreme
C-terminal end. Oligoadenylate synthetases are antiviral
enzymes that counteract vial attack by degrading viral
RNA. The enzyme uses ATP in 2'-specific nucleotidyl
transfer reactions to synthesise 2'.5'-oligoadenylates,
which activate latent ribonuclease, resulting in
degradation of viral RNA and inhibition of virus
replication. This domain is often associated with
NTP_transf_2 pfam01909.
Length = 191
Score = 25.7 bits (57), Expect = 6.3
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 12/45 (26%)
Query: 79 STLFRDCKKLVKL--------ELQRNKLKYLPENLFESLKELYTL 115
+ L R+C KL K ELQRN +K P LK L L
Sbjct: 10 ADLIRECTKLDKEGEFSVCFTELQRNFVKSRPTK----LKNLIRL 50
>gnl|CDD|237947 PRK15338, PRK15338, type III secretion system regulator InvE;
Provisional.
Length = 372
Score = 25.9 bits (57), Expect = 6.4
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 55 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88
D N +L HK SL +++ CK L
Sbjct: 298 DSLLADILGLNALLLSHKDHASLLQAIYQVCKAL 331
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.380
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,276,199
Number of extensions: 538812
Number of successful extensions: 539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 45
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (23.8 bits)