RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8031
(127 letters)
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 82.0 bits (203), Expect = 4e-20
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F + L + + L+EL GLF L L + L ++++ LP D F + N
Sbjct: 97 DPATFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+T++ L +++S+P FR L +L L +N++ ++ + F L L TL L N L
Sbjct: 155 LTHLFL-HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 123 ENI 125
+
Sbjct: 214 SAL 216
Score = 79.3 bits (196), Expect = 4e-19
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P + A + + + H + + +P+ F L + L + +A + + F
Sbjct: 26 VPVGIPAASQRIFL-----HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ + L+ + +L S+ F +L L L R L+ L LF L L L L++N
Sbjct: 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140
Query: 122 LENI 125
L+ +
Sbjct: 141 LQAL 144
Score = 76.6 bits (189), Expect = 3e-18
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F + L+ + +S L+ + F L L+T+ L + EL LF
Sbjct: 72 DAAAFTGLALLEQLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L L +LP FRD L L L N++ +PE F L L L L N++
Sbjct: 131 LQYLYL-QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 123 ENITR 127
++
Sbjct: 190 AHVHP 194
Score = 75.4 bits (186), Expect = 1e-17
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
LF + LQ + + + L+ LP F +L L + L + I+ +P F +
Sbjct: 121 GPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ ++L ++ + + FRD +L+ L L N L LP L+ L L L +N
Sbjct: 179 LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Score = 62.3 bits (152), Expect = 6e-13
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L+ +P G+ A + L + I+ +P+ F N+T + L L + + F
Sbjct: 22 GLQAVPVGIPAASQRIF---LHGNRISHVPAASFRACRNLTILWL-HSNVLARIDAAAFT 77
Query: 84 DCKKLVKLELQRN-KLKYLPENLFESLKELYTLNLKNNQLENI 125
L +L+L N +L+ + F L L+TL+L L+ +
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120
Score = 46.9 bits (112), Expect = 2e-07
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+ L ++P + ++ L N++ ++P F + + L L L +N L I
Sbjct: 20 QQGLQAVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73
Score = 25.3 bits (56), Expect = 6.1
Identities = 4/32 (12%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 94 QRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ L+ +P + + + ++ L N++ ++
Sbjct: 19 PQQGLQAVPVGIPAASQRIF---LHGNRISHV 47
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 78.9 bits (195), Expect = 2e-19
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
++K +P G F+ L + L + I+EL D F ++ ++VL K+T LP +LF
Sbjct: 43 TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-GNKITELPKSLFE 101
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L L L NK+ L + F+ L L L+L +N+L+ I
Sbjct: 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143
Score = 69.3 bits (170), Expect = 1e-15
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P F+ K L+ I +S ++ + EL F L LN+++L + I ELP LF +
Sbjct: 48 PPGAFSPYKKLRRIDLSNNQ--ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ ++L K+ L F+D L L L NKL+ + + F L+ + T++L N
Sbjct: 106 LQLLLL-NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 56.6 bits (137), Expect = 5e-11
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
IT I L + +P F KKL +++L N++ L + F+ L+ L +L L N
Sbjct: 32 ETITEIRL-EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Query: 121 QLENI 125
++ +
Sbjct: 91 KITEL 95
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 80.6 bits (199), Expect = 4e-19
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F ++ V K + L +F++ L + L ++ I ++ + FW T+
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L+ L S+ S +F + KL L+L N ++ L + F L L L L NQL
Sbjct: 325 LLKLNLS-QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Query: 123 ENITR 127
+++
Sbjct: 384 KSVPD 388
Score = 71.7 bits (176), Expect = 6e-16
Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
K +F+ L+ + ++ ++ + ++ F L L + L ++ + + S +F N
Sbjct: 291 LKSVFSHFTDLEQLTLAQNE--INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L + + +L F L +L L N+LK +P+ +F+ L L + L N
Sbjct: 349 LEVLDL-SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
Score = 57.4 bits (139), Expect = 5e-11
Identities = 20/83 (24%), Positives = 31/83 (37%)
Query: 44 LGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE 103
L +SIAEL F ++ + + + + FR L+ L+L N+ L
Sbjct: 37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96
Query: 104 NLFESLKELYTLNLKNNQLENIT 126
F L L L L L+
Sbjct: 97 GAFNGLANLEVLTLTQCNLDGAV 119
Score = 56.3 bits (136), Expect = 1e-10
Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE--LPSDLFWNS 60
+ F + L ++K+ Y++ +L +G F L L + L + ++ L + F
Sbjct: 71 RNNTFRGLSSLIILKLDYNQ--FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128
Query: 61 TNITNIVLTGHKKLTSL-PSTLFRDCKKLVKLELQRNKLKYLPENLFESL--KELYTLNL 117
T++ +VL + + + P++ F + ++ L+L NK+K + E + K L L
Sbjct: 129 TSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 118 KNNQLENITR 127
+ L+++
Sbjct: 188 SSITLQDMNE 197
Score = 45.5 bits (108), Expect = 8e-07
Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 12/134 (8%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNST 61
F + L+V+ ++ L F L L ++L +++I ++ P+ F N
Sbjct: 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154
Query: 62 NITNIVLTGHKKLTSLPSTLFRDC--KKLVKLELQRNKLKYLPEN--------LFESLKE 111
+ LT K+ S+ + K L L L+ + E
Sbjct: 155 RFHVLDLTF-NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213
Query: 112 LYTLNLKNNQLENI 125
+ TL+L N +
Sbjct: 214 ITTLDLSGNGFKES 227
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 76.6 bits (189), Expect = 4e-18
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P +F E+K L+ + ++ +K L+ LP G+F L L + L + + LP +F + T
Sbjct: 77 PAGIFKELKNLETLWVTDNK--LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+T + L G+ +L SLP +F L +L L N+LK +PE F+ L EL TL L NNQL
Sbjct: 135 LTYLSL-GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 123 ENITR 127
+ +
Sbjct: 194 KRVPE 198
Score = 75.0 bits (185), Expect = 1e-17
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 21 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
+ L LPS F L L + L ++ + LP+ +F N+ + +T KL +LP
Sbjct: 45 QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIG 103
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+F L +L L RN+LK LP +F+SL +L L+L N+L+++
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
Score = 64.6 bits (158), Expect = 8e-14
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P +F ++ L +++ ++ LK LP +F +L L + LG + + LP +F T+
Sbjct: 101 PIGVFDQLVNLAELRLDRNQ--LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ + L + +L +P F +L L+L N+LK +PE F+SL++L L L+ N
Sbjct: 159 LKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 45.0 bits (107), Expect = 1e-06
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 72 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
KKLT++PS + D KL+LQ NKL LP F L +L L L +N+L+ +
Sbjct: 26 KKLTAIPSNIPAD---TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 76.5 bits (189), Expect = 4e-18
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P +L K L + + L+ L S F + P L + L I + + + ++
Sbjct: 23 PDNLPFSTKNLDL-----SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
++ ++LTG + SL F L KL L L LK L LN+ +N +
Sbjct: 78 LSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 123 ENI 125
++
Sbjct: 137 QSF 139
Score = 70.8 bits (174), Expect = 4e-16
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F LQV+ +S + ++ + G + +L L+T+IL + I L F ++
Sbjct: 44 GSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQ 121
+ +V L SL + K L +L + N ++ F +L L L+L +N+
Sbjct: 102 LQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 122 LENI 125
+++I
Sbjct: 161 IQSI 164
Score = 62.3 bits (152), Expect = 6e-13
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS-DLFWNST 61
F+ + LQ + L L + +L L + + + I + F N T
Sbjct: 92 ALGAFSGLSSLQKLVAVETN--LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKL----VKLELQRNKLKYLPENLFESLKELYTLNL 117
N+ ++ L K+ S+ T R ++ + L+L N + ++ F+ ++ L L L
Sbjct: 150 NLEHLDL-SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELAL 207
Query: 118 KNNQLENI 125
NQL+++
Sbjct: 208 DTNQLKSV 215
Score = 61.1 bits (149), Expect = 2e-12
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
+ ++P L + L+ L + + L S F++ + + L ++ ++ ++
Sbjct: 18 NFYKIPDNLPFSTKNLD---LSFNPLRHLGSYSFFSFPELQVLDL-SRCEIQTIEDGAYQ 73
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L L L N ++ L F L L L L ++
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Score = 57.7 bits (140), Expect = 3e-11
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 7/122 (5%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPSDLFWNST 61
+K L+ + ++++ ++ F+NL L + L + I +
Sbjct: 116 ENFPIGHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 62 NITNIVLT---GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 118
+ + L+ + + F +L +L L N+LK +P+ +F+ L L + L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232
Query: 119 NN 120
N
Sbjct: 233 TN 234
Score = 45.7 bits (109), Expect = 6e-07
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 72 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+P L K L+L N L++L F S EL L+L +++ I
Sbjct: 17 LNFYKIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 75.5 bits (186), Expect = 7e-18
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F + L + + Y++ L+ L +G+F +L L T+ L + +A LP +F + T
Sbjct: 51 SDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L G +L SLPS +F KL +L L N+L+ +P F+ L L TL+L NQL
Sbjct: 109 LDKLYL-GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 123 ENITR 127
+++
Sbjct: 168 QSVPH 172
Score = 59.7 bits (145), Expect = 5e-12
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+F ++ L + ++ ++ L LP G+F +L L+ + LG + + LPS +F T
Sbjct: 75 SAGVFDDLTELGTLGLANNQ--LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ + L +L S+P+ F L L L N+L+ +P F+ L +L T+ L NQ
Sbjct: 133 LKELRL-NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 50.1 bits (120), Expect = 1e-08
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L +L FR KL L L N+L+ L +F+ L EL TL L NNQL ++
Sbjct: 46 GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Score = 42.0 bits (99), Expect = 1e-05
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 72 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
K L S+PS + D +KL +LQ L L + F L +L LNL NQL+ +
Sbjct: 24 KSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 75.9 bits (187), Expect = 8e-18
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
+ L + +S+++ L+ LP L LP L + + + + LP + +
Sbjct: 73 DGTLPVLGTLDLSHNQ--LQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L +L +LP L KL KL L N L LP L L+ L TL L+ N L I
Sbjct: 130 YL-KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 127 R 127
+
Sbjct: 189 K 189
Score = 69.4 bits (170), Expect = 2e-15
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P DL + L + ++ L L + L + + +L +
Sbjct: 26 PPDLPKDTTILHL-----SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPV 78
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L+ H +L SLP + L L++ N+L LP L EL L LK N+L
Sbjct: 79 LGTLDLS-HNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 123 ENI 125
+ +
Sbjct: 137 KTL 139
Score = 62.0 bits (151), Expect = 1e-12
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
L LP G L L + L + + LP L + + + L + LT LP+ L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPAGLLNG 170
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ L L LQ N L +P+ F S L L N
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205
Score = 54.0 bits (130), Expect = 7e-10
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 29 PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88
P + + V + ++ LP DL + T + L+ + L + +L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENL-LYTFSLATLMPYTRL 57
Query: 89 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+L L R +L L + +L L TL+L +NQL+++
Sbjct: 58 TQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL 92
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 75.9 bits (187), Expect = 2e-17
Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P L + ++++ ++ + ++E+ + FA + + +G ++I LP +F N
Sbjct: 61 PAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+T +VL L+SLP +F + KL L + N L+ + ++ F++ L L L +N+L
Sbjct: 119 LTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 123 ENI 125
++
Sbjct: 178 THV 180
Score = 67.8 bits (166), Expect = 1e-14
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
FA +Q + + ++ ++ LP +F N+PLL ++L + ++ LP +F N+
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+T + + + L + F+ L L+L N+L ++ +L SL N+ N
Sbjct: 141 PKLTTLSM-SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYN 196
Query: 121 QLENIT 126
L +
Sbjct: 197 LLSTLA 202
Score = 54.7 bits (132), Expect = 5e-10
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 24/139 (17%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN----------------TVILGE 46
D F LQ +++S ++ L + L +L N +
Sbjct: 157 EDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214
Query: 47 SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 106
+SI + + +T + L H LT + LV+++L N+L+ + + F
Sbjct: 215 NSINVVRGPVN---VELTILKLQ-HNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 107 ESLKELYTLNLKNNQLENI 125
++ L L + NN+L +
Sbjct: 269 VKMQRLERLYISNNRLVAL 287
Score = 52.7 bits (127), Expect = 2e-09
Identities = 14/101 (13%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 29 PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTLFRD 84
P + L + + I D+++ +IT + + LP+ L
Sbjct: 8 PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+++ L L +++ + F + L + N + +
Sbjct: 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 108
Score = 51.2 bits (123), Expect = 8e-09
Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
S+ + + L +L L +++ + N + + L + +L + F
Sbjct: 216 SINVVRGPVNVELTILK---LQHNNLTDTAW--LLNYPGLVEVDL-SYNELEKIMYHPFV 269
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
++L +L + N+L L + + L L+L +N L ++ R
Sbjct: 270 KMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVER 312
Score = 50.0 bits (120), Expect = 2e-08
Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
L + +SY++ L+++ F + L + + + + L + +
Sbjct: 244 LLNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVL 300
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L H L + +L L L N + L + +LK L L +N +
Sbjct: 301 DL-SHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLKN---LTLSHNDWDCN 354
Score = 26.2 bits (58), Expect = 3.1
Identities = 6/60 (10%), Positives = 20/60 (33%), Gaps = 11/60 (18%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY-----TLNLKNNQLENI 125
+ + S L DC + ++++ +++ + KN+ + +
Sbjct: 7 QPEYKCIDSNLQYDC------VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 76.3 bits (188), Expect = 2e-17
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F + L+ + + ++ LK +P G+F L L + + E+ I L +F + N
Sbjct: 72 EPGAFNNLFNLRTLGLRSNR--LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ ++ + G L + F L +L L++ L +P L L L L++ +
Sbjct: 130 LKSLEV-GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188
Query: 123 ENI 125
I
Sbjct: 189 NAI 191
Score = 73.6 bits (181), Expect = 1e-16
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P+ + E + L + K+ +K L FA+ P L + L E+ ++ + F N
Sbjct: 26 VPEGIPTETRLLDL-----GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
N+ + L +L +P +F L KL++ NK+ L + +F+ L L +L + +N
Sbjct: 81 NLRTLGL-RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139
Query: 122 LENI 125
L I
Sbjct: 140 LVYI 143
Score = 73.2 bits (180), Expect = 2e-16
Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 3/123 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F+ + L+ + + L +P+ ++L L + L +I + F
Sbjct: 144 SHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + ++ L ++ L L + L +P L L LNL N +
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 123 ENI 125
I
Sbjct: 261 STI 263
Score = 73.2 bits (180), Expect = 2e-16
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
+L +P +L L + L + I+ + + + I L +L + FR
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV-GGQLAVVEPYAFR 293
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
L L + N+L L E++F S+ L TL L +N L
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 72.1 bits (177), Expect = 4e-16
Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P + + + L V+++ + ++ + F L L + + + + N
Sbjct: 168 PTEALSHLHGLIVLRLRH--LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+T++ +T H LT++P R L L L N + + ++ L L + L QL
Sbjct: 226 LTSLSIT-HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 123 ENITR 127
+
Sbjct: 285 AVVEP 289
Score = 70.9 bits (174), Expect = 1e-15
Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F + L+V++IS H L + L L ++ + ++ +P +
Sbjct: 192 RDYSFKRLYRLKVLEIS-HWPYLDTMTPNCLYGLNL-TSLSITHCNLTAVPYLAVRHLVY 249
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L + ++++ ++ + +L +++L +L + F L L LN+ NQL
Sbjct: 250 LRFLNL-SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 123 ENI 125
+
Sbjct: 309 TTL 311
Score = 69.7 bits (171), Expect = 3e-15
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P +F + L + IS +K + L +F +L L ++ +G++ + + F +
Sbjct: 96 PLGVFTGLSNLTKLDISENK--IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL-KNNQ 121
+ + L LTS+P+ L+ L L+ + + + F+ L L L +
Sbjct: 154 LEQLTL-EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 122 LENIT 126
L+ +T
Sbjct: 213 LDTMT 217
Score = 68.2 bits (167), Expect = 1e-14
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
+P G+ LL+ LG++ I L D F + ++ + L ++++ F
Sbjct: 22 RFVAVPEGIPTETRLLD---LGKNRIKTLNQDEFASFPHLEELELN-ENIVSAVEPGAFN 77
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ L L L+ N+LK +P +F L L L++ N++ +
Sbjct: 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119
Score = 46.2 bits (110), Expect = 4e-07
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 64 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
VL K+ ++P + + L+L +N++K L ++ F S L L L N +
Sbjct: 13 DRAVLCHRKRFVAVPEGIPTE---TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69
Query: 124 NI 125
+
Sbjct: 70 AV 71
Score = 25.4 bits (56), Expect = 6.5
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+ R + +PE + + L+L N+++ + +
Sbjct: 16 VLCHRKRFVAVPEGIPTETR---LLDLGKNRIKTLNQ 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 75.6 bits (186), Expect = 3e-17
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P F + L+ + + L + G F L L + L ++ E+P+
Sbjct: 152 PSYAFNRIPSLRRLDLG-ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIK 208
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L L+++ F+ L KL + +++++ + N F++L+ L +NL +N L
Sbjct: 209 LDELDL-SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 123 ENI 125
+
Sbjct: 268 TLL 270
Score = 74.0 bits (182), Expect = 8e-17
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F + L +++ ++ L +P+G F L L + L + I +PS F +
Sbjct: 104 EIGAFNGLANLNTLELFDNR--LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L K+L+ + F L L L L+ +P L +L L+L N L
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHL 219
Query: 123 ENI 125
I
Sbjct: 220 SAI 222
Score = 70.2 bits (172), Expect = 2e-15
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SIAELPSDLFWNST 61
P F + L+ + + + ++ +PS F +P L + LGE ++ + F +
Sbjct: 128 PNGAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
N+ + L L +P+ KL +L+L N L + F+ L L L + +Q
Sbjct: 186 NLRYLNL-AMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242
Query: 122 LENITR 127
++ I R
Sbjct: 243 IQVIER 248
Score = 65.5 bits (160), Expect = 8e-14
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
+L+E+P G+ N LLN L E+ I + + F + ++ + L + ++ F
Sbjct: 54 NLREVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQL-SRNHIRTIEIGAFN 109
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L LEL N+L +P F L +L L L+NN +E+I
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151
Score = 65.2 bits (159), Expect = 1e-13
Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ F + L+ + ++ L+E+P+ L L+ + L + ++ + F +
Sbjct: 177 SEGAFEGLSNLRYLNLAMCN--LREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + + + + + F + + LV++ L N L LP +LF L L ++L +N
Sbjct: 233 LQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
Score = 56.3 bits (136), Expect = 1e-10
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 37 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 96
+ VI ++ E+P + TN + L ++ + + F+ + L L+L RN
Sbjct: 43 NQFSKVICVRKNLREVPDGIS---TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN 98
Query: 97 KLKYLPENLFESLKELYTLNLKNNQLENITR 127
++ + F L L TL L +N+L I
Sbjct: 99 HIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 75.2 bits (185), Expect = 3e-17
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P F + L + + L+ + G F L L + LG +I ++P+
Sbjct: 163 PSYAFNRVPSLMRLDLG-ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVG 219
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + + + F L KL + +++ + N F+ L L LNL +N L
Sbjct: 220 LEELEM-SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278
Query: 123 ENI 125
++
Sbjct: 279 SSL 281
Score = 75.2 bits (185), Expect = 4e-17
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 4/125 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F + L +++ + L +PSG F L L + L + I +PS F +
Sbjct: 115 EVGAFNGLASLNTLELFDNW--LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L KKL + F L L L +K +P L L L + N
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHF 230
Query: 123 ENITR 127
I
Sbjct: 231 PEIRP 235
Score = 67.5 bits (165), Expect = 1e-14
Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ F + L+ + + +K++P+ L L + + + E+ F ++
Sbjct: 188 SEGAFEGLFNLKYLNLGMCN--IKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + + + +++ + F LV+L L N L LP +LF L+ L L+L +N
Sbjct: 244 LKKLWVM-NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
Score = 66.3 bits (162), Expect = 5e-14
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L E+P G+ +N LN L E++I + +D F + ++ + L G + + F
Sbjct: 65 GLSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQL-GRNSIRQIEVGAFN 120
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L LEL N L +P FE L +L L L+NN +E+I
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI 162
Score = 57.1 bits (138), Expect = 8e-11
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 37 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 96
+ V+ ++E+P + +N + L + + + + FR L L+L RN
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIP---SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN 109
Query: 97 KLKYLPENLFESLKELYTLNLKNNQLENI 125
++ + F L L TL L +N L I
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVI 138
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 73.9 bits (182), Expect = 5e-17
Identities = 18/99 (18%), Positives = 43/99 (43%)
Query: 29 PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88
+F +L L + + + + +F +++ + + G+ + +F + + L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177
Query: 89 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
L+L + +L+ L F SL L LN+ +N ++
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Score = 70.8 bits (174), Expect = 7e-16
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 4/124 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNST 61
+F ++ L + IS+ + +G+F L L + + S D+F
Sbjct: 118 EFSVFLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
N+T + L +L L T F L L + N L ++ L L L+ N
Sbjct: 176 NLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234
Query: 122 LENI 125
+
Sbjct: 235 IMTS 238
Score = 65.4 bits (160), Expect = 6e-14
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 3/121 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+F + L+V+K++ + + +F L L + L + + +L F + ++
Sbjct: 142 FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL-KELYTLNLKNNQ 121
+ + + H SL + ++ L L+ N + + + L LNL N
Sbjct: 201 LQVLNM-SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259
Query: 122 L 122
Sbjct: 260 F 260
Score = 64.6 bits (158), Expect = 1e-13
Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 3/121 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P +F ++ L + +S + S K S L + L + + + S+ F
Sbjct: 44 PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ 102
Query: 63 ITNIVLTGHKKLTSLPST-LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ ++ H L + +F + L+ L++ + +F L L L + N
Sbjct: 103 LEHLDF-QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 122 L 122
Sbjct: 162 F 162
Score = 51.6 bits (124), Expect = 5e-09
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG-HKKLTSLPSTLF 82
L +P+G+ ++ L L + + LP +F T +T + L+ S
Sbjct: 18 GLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74
Query: 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L L+L N + + N F L++L L+ +++ L+ +
Sbjct: 75 FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 116
Score = 46.9 bits (112), Expect = 2e-07
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 40 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 99
+ + +P+ + ++ T + L +K L SLP +F +L KL L N L
Sbjct: 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 100 Y--LPENLFESLKELYTLNLKNNQLENITR 127
+ L L+L N + ++
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVITMSS 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 74.1 bits (182), Expect = 6e-17
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ + L + +S++ L + S F +P L + L + + L LF +
Sbjct: 56 AEWTPTRLTNLHSLLLSHNH--LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF---ESLKELYTLNLKN 119
+ ++L + + + F D +L KL L +N++ P L L +L L+L +
Sbjct: 114 LEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172
Query: 120 NQLENI 125
N+L+ +
Sbjct: 173 NKLKKL 178
Score = 73.7 bits (181), Expect = 9e-17
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGL-FANLPLLNTVILGESSIAELPSDLFWNST 61
P+ L + L + ++L L + L L++++L + + + S+ F
Sbjct: 34 PQSLPSYTALLDL-----SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
N+ + L+ L +L LF D + L L L N + + N FE + +L L L NQ
Sbjct: 89 NLRYLDLS-SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 122 LENI 125
+
Sbjct: 148 ISRF 151
Score = 62.6 bits (152), Expect = 8e-13
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ F + L+ + +S + L L LF++L L ++L + I + + F +
Sbjct: 80 SSEAFVPVPNLRYLDLSSNH--LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLE---LQRNKLKYLPENLFESLKELY--TLNL 117
+ + L+ +++ P L +D KL KL L NKLK LP + L L L
Sbjct: 138 LQKLYLS-QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196
Query: 118 KNNQL 122
NN L
Sbjct: 197 HNNPL 201
Score = 43.7 bits (103), Expect = 3e-06
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 22/83 (26%)
Query: 65 NIVLTGHKKLTSLPSTL----------------------FRDCKKLVKLELQRNKLKYLP 102
NI+ ++L ++P +L L L L N L ++
Sbjct: 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80
Query: 103 ENLFESLKELYTLNLKNNQLENI 125
F + L L+L +N L +
Sbjct: 81 SEAFVPVPNLRYLDLSSNHLHTL 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 74.1 bits (182), Expect = 6e-17
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
D+F+ + L I+I ++L + F NLP L +++ + I LP +S
Sbjct: 71 EADVFSNLPKLHEIRIE-KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129
Query: 63 ITNIVLTGHKKLTSLPSTLFRDC-KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ + + + ++ F + V L L +N ++ + + F + NN
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189
Query: 122 LENI 125
LE +
Sbjct: 190 LEEL 193
Score = 71.4 bits (175), Expect = 5e-16
Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWNS 60
P DL L+ L+ + G F+ L + + ++ + E + +D+F N
Sbjct: 24 IPSDLPRNAIELRF-----VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK-N 119
+ I + L + F++ L L + +K+LP+ + L+++ N
Sbjct: 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138
Query: 120 NQLENI 125
+ I
Sbjct: 139 INIHTI 144
Score = 68.7 bits (168), Expect = 6e-15
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP-LLNTVILGESSIAELPSDLFWNS 60
P ++ I + ++ + F L + L ++ I E+ + F N
Sbjct: 119 LPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NG 176
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
T + + L+ + L LP+ +F V L++ R ++ LP E+LK+L + N
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236
Query: 121 Q 121
+
Sbjct: 237 K 237
Score = 44.0 bits (104), Expect = 3e-06
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
K+T +PS L R+ ++L KL+ + + F +L + + N +
Sbjct: 18 ESKVTEIPSDLPRN---AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Score = 33.3 bits (76), Expect = 0.012
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
L+ELP+ +F + + + I LPS N+ + L LP+
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT--LEK 244
Query: 85 CKKLVKLELQRN 96
L++ L
Sbjct: 245 LVALMEASLTYP 256
Score = 25.9 bits (57), Expect = 4.9
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
Q +K+ +P +L + EL +L I +
Sbjct: 14 FLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQK 47
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 71.6 bits (176), Expect = 1e-16
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+F ++ L+ I S +K + ++ G F +N ++L + + + +F +
Sbjct: 49 ATGIFKKLPQLRKINFSNNK--ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ ++L ++T + + F + L L N++ + F++L L TLNL N
Sbjct: 107 LKTLML-RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 71.2 bits (175), Expect = 2e-16
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 29 PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88
+G+F LP L + + I ++ F ++ + I+LT +L ++ +F+ + L
Sbjct: 49 ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLENVQHKMFKGLESL 107
Query: 89 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
L L+ N++ + + F L + L+L +NQ+ +
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146
Score = 52.0 bits (125), Expect = 3e-09
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 40 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST-LFRDCKKLVKLELQRNKL 98
TV + ++P + + L + + T L +T +F+ +L K+ NK+
Sbjct: 14 TTVDCSNQKLNKIPEHI---PQYTAELRL-NNNEFTVLEATGIFKKLPQLRKINFSNNKI 69
Query: 99 KYLPENLFESLKELYTLNLKNNQLENI 125
+ E FE + + L +N+LEN+
Sbjct: 70 TDIEEGAFEGASGVNEILLTSNRLENV 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 73.0 bits (179), Expect = 2e-16
Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P L + ++++ ++ + ++E+ + FA + + +G ++I LP +F N
Sbjct: 67 PAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+T +VL L+SLP +F + KL L + N L+ + ++ F++ L L L +N+L
Sbjct: 125 LTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 123 ENI 125
++
Sbjct: 184 THV 186
Score = 64.6 bits (157), Expect = 2e-13
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
FA +Q + + ++ ++ LP +F N+PLL ++L + ++ LP +F N+
Sbjct: 91 DTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+T + + + L + F+ L L+L N+L ++ +L SL N+ N L
Sbjct: 149 LTTLSM-SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYNLL 204
Query: 123 ENI 125
+
Sbjct: 205 STL 207
Score = 52.2 bits (125), Expect = 4e-09
Identities = 14/105 (13%), Positives = 35/105 (33%), Gaps = 4/105 (3%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPST 80
P + L + + I D+++ +IT + + LP+
Sbjct: 10 KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L +++ L L +++ + F + L + N + +
Sbjct: 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 114
Score = 51.9 bits (124), Expect = 5e-09
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 24/139 (17%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL----------------PLLNTVILGE 46
D F LQ +++S ++ L + L +L + +
Sbjct: 163 EDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220
Query: 47 SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 106
+SI + + +T + L H LT + LV+++L N+L+ + + F
Sbjct: 221 NSINVVRGPVN---VELTILKLQ-HNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPF 274
Query: 107 ESLKELYTLNLKNNQLENI 125
++ L L + NN+L +
Sbjct: 275 VKMQRLERLYISNNRLVAL 293
Score = 49.9 bits (119), Expect = 3e-08
Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
S+ + + L +L L +++ + N + + L + +L + F
Sbjct: 222 SINVVRGPVNVELTILK---LQHNNLTDTAW--LLNYPGLVEVDL-SYNELEKIMYHPFV 275
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
++L +L + N+L L + + L L+L +N L ++ R
Sbjct: 276 KMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVER 318
Score = 46.5 bits (110), Expect = 4e-07
Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
L + +SY++ L+++ F + L + + + + L + +
Sbjct: 250 LLNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVL 306
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L H L + +L L L N + L + +LK L L +N +
Sbjct: 307 DL-SHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLKN---LTLSHNDWDCN 360
Score = 26.0 bits (57), Expect = 4.5
Identities = 4/60 (6%), Positives = 17/60 (28%), Gaps = 5/60 (8%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY-----TLNLKNNQLENI 125
+ P D + ++++ +++ + KN+ + +
Sbjct: 7 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 71.2 bits (175), Expect = 3e-16
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 21 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
+ L+ LP+G+F L L ++L E+ + LP +F TN+T + L H +L SLP
Sbjct: 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL-AHNQLQSLPKG 151
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+F L +L+L N+L+ LPE +F+ L +L L L NQL+++
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Score = 56.9 bits (138), Expect = 5e-11
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 21 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
++ L+ LP G+F L L + L + + LP +F TN+T + L + +L SLP
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPEG 175
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+F +L L L +N+LK +P+ +F+ L L + L +N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Score = 55.4 bits (134), Expect = 2e-10
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 14 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 73
+ +I + +K + LP + + LG + + ++ + TN+T ++LTG +
Sbjct: 42 SIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTG-NQ 96
Query: 74 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
L SLP+ +F L +L L N+L+ LP+ +F+ L L LNL +NQL
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145
Score = 47.3 bits (113), Expect = 2e-07
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 21 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
K S+ + + L ++ +I S I + N+ + L G KL + +
Sbjct: 27 KKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLAL-GGNKLHDISA- 80
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
++ L L L N+L+ LP +F+ L L L L NQL+
Sbjct: 81 -LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Score = 35.0 bits (81), Expect = 0.003
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
L K +T + + + ++ + +K + + L + L L
Sbjct: 18 FAETIKANLKK-KSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGG 72
Query: 120 NQLENI 125
N+L +I
Sbjct: 73 NKLHDI 78
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 70.5 bits (173), Expect = 1e-15
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNST 61
+D F+ + L+ + +SY+ L L S F L L + L + L + LF + T
Sbjct: 92 EEDSFSSLGSLEHLDLSYNY--LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ + + T + F L +LE+ + L+ +S++ + L L Q
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
Query: 122 LENI 125
+
Sbjct: 210 HILL 213
Score = 66.3 bits (162), Expect = 3e-14
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
SL +PSGL + L+ L + I + + N+ +VL + ++ F
Sbjct: 42 SLNSIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVL-TSNGINTIEEDSFS 97
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L L+L N L L + F+ L L LNL N + +
Sbjct: 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139
Score = 60.5 bits (147), Expect = 4e-12
Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 5/125 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKEL-PSGLFANLPLLNTVILGE-SSIAELPSDLFWNS 60
F + L + + + K L + LF++L L + +G + ++ F
Sbjct: 116 SSSWFKPLSSLTFLNLLGNP--YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
T + + + L S + + + L L + L E + + L L++
Sbjct: 174 TFLEELEI-DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Query: 121 QLENI 125
L+
Sbjct: 233 DLDTF 237
Score = 59.4 bits (144), Expect = 1e-11
Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 10/130 (7%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ FA + +L+ ++I L+ ++ ++ +IL L +++
Sbjct: 166 QRKDFAGLTFLEELEIDA--SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223
Query: 63 ITNIVLTG----HKKLTSLPSTLFRDCKKLV---KLELQRNKLKYLPENLFESLKELYTL 115
+ + L + L + K +++ L + + L + L L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLEL 282
Query: 116 NLKNNQLENI 125
NQL+++
Sbjct: 283 EFSRNQLKSV 292
Score = 59.0 bits (143), Expect = 2e-11
Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 7/129 (5%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
LF+ + LQ++++ D+ ++ FA L L + + S + + N
Sbjct: 141 ETSLFSHLTKLQILRVGNM-DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNL 117
+++++L K+ L + LEL+ L L SL + +T
Sbjct: 200 VSHLIL-HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258
Query: 118 KNNQLENIT 126
E++
Sbjct: 259 VKITDESLF 267
Score = 57.4 bits (139), Expect = 5e-11
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 12/126 (9%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE--------SSIAELPS 54
++ + + + + L + + L + S ++ +
Sbjct: 190 EPKSLKSIQNVSHLILHMKQ--HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247
Query: 55 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 114
+ N+ +T + L + L L++LE RN+LK +P+ +F+ L L
Sbjct: 248 NSLIKKFTFRNVKIT-DESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305
Query: 115 LNLKNN 120
+ L N
Sbjct: 306 IWLHTN 311
Score = 55.5 bits (134), Expect = 2e-10
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 36 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 95
S+ +PS L + ++ L + ++T + ++ + C L L L
Sbjct: 30 CDRNGICKGSSGSLNSIPSGLT---EAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTS 85
Query: 96 NKLKYLPENLFESLKELYTLNLKNNQLENI 125
N + + E+ F SL L L+L N L N+
Sbjct: 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115
Score = 32.0 bits (73), Expect = 0.032
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 8/104 (7%)
Query: 1 MFPKDLFAEMKYLQVIKISY---HKDSLKELPSGLF---ANLPLLNTVILGESSIAELPS 54
+ + ++ +++ EL +G V + + S+ ++
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM- 270
Query: 55 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 98
L + + + + +L S+P +F L K+ L N
Sbjct: 271 KLLNQISGLLELEFS-RNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 68.5 bits (168), Expect = 2e-15
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 21 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
+SLK LP+G+F L L + LG + + LP+ +F T++T + L +L SLP+
Sbjct: 36 ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL-STNQLQSLPNG 94
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+F +L +L L N+L+ LP+ +F+ L +L L L NQL+++
Sbjct: 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141
Score = 59.3 bits (144), Expect = 4e-12
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
P +F E+ L + + +K L+ LP+G+F L L + L + + LP+ +F T
Sbjct: 44 PNGVFDELTSLTQLYLGGNK--LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ + L +L SLP +F +L L L +N+LK +P+ +F+ L L + L +N
Sbjct: 102 LKELAL-NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159
Score = 40.4 bits (95), Expect = 3e-05
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ TS+P+ + L +L+ N LK LP +F+ L L L L N+L
Sbjct: 17 QGRTSVPTGIPAQTTYL---DLETNSLKSLPNGVFDELTSLTQLYLGGNKL 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 68.5 bits (168), Expect = 5e-15
Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
K +F + + V+++ + + +G F + L+ + + +++I +P L +
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PS 193
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+T + L K+T + + + L KL L N + + + L L+L NN+L
Sbjct: 194 LTELHL-DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 123 ENI 125
+
Sbjct: 253 VKV 255
Score = 65.4 bits (160), Expect = 7e-14
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
F MK L I+I+ + +P GL +L L+ L + I ++ +
Sbjct: 161 GIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTELH---LDGNKITKVDAASLKGL 215
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
N+ + L ++++ + + L +L L NKL +P L K + + L NN
Sbjct: 216 NNLAKLGL-SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNN 273
Query: 121 QLENITR 127
+ I
Sbjct: 274 NISAIGS 280
Score = 63.9 bits (156), Expect = 2e-13
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
PKDL + L + + + E+ G F NL L+T+IL + I+++ F
Sbjct: 46 VPKDLPPDTALLDL-----QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ + L +L LP + + L +L + N++ + +++F L ++ + L N
Sbjct: 101 KLERLYL-SKNQLKELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 122 LENI 125
L++
Sbjct: 157 LKSS 160
Score = 63.1 bits (154), Expect = 5e-13
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L+++P L + LL+ L + I E+ F N N+ ++L + K++ + F
Sbjct: 42 GLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFA 97
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
KL +L L +N+LK LPE + ++L+EL + N++ + +
Sbjct: 98 PLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRK 138
Score = 60.0 bits (146), Expect = 5e-12
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAE--LPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
+ ++ +F L + V LG + + + + F ++ I + +T++P L
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI-ADTNITTIPQGLP 191
Query: 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L +L L NK+ + + L L L L N + +
Sbjct: 192 P---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Score = 53.5 bits (129), Expect = 1e-09
Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ L + +S++ + + +G AN P L + L + + ++P +
Sbjct: 208 DAASLKGLNNLAKLGLSFNS--ISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKY 264
Query: 63 ITNIVLTGHKKLTSLPSTLFR------DCKKLVKLELQRNKLKY--LPENLFESLKELYT 114
I + L + ++++ S F + L N ++Y + + F +
Sbjct: 265 IQVVYL-HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323
Query: 115 LNLKNN 120
+ L N
Sbjct: 324 VQLGNY 329
Score = 52.7 bits (127), Expect = 2e-09
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 39 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 98
L V + + ++P DL + + L + K+T + F++ K L L L NK+
Sbjct: 33 LRVVQCSDLGLEKVPKDLP---PDTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 99 KYLPENLFESLKELYTLNLKNNQLENI 125
+ F L +L L L NQL+ +
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKEL 115
Score = 35.7 bits (83), Expect = 0.002
Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 10/104 (9%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW-- 58
A +L+ + ++ +K L ++P G A+ + V L ++I+ + S+ F
Sbjct: 230 AVDNGSLANTPHLRELHLNNNK--LVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPP 286
Query: 59 ----NSTNITNIVLTGHK-KLTSLPSTLFRDCKKLVKLELQRNK 97
+ + + L + + + + FR ++L K
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 67.3 bits (165), Expect = 2e-14
Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 3/124 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F+ + L + ++ + + + F + L+T++L + + +
Sbjct: 49 QNTTFSRLINLTFLDLTRCQ--IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ ++ ++S+ + K L L L N + + ++L L+ +NN +
Sbjct: 107 LKHLFF-IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165
Query: 123 ENIT 126
++
Sbjct: 166 HYLS 169
Score = 65.8 bits (161), Expect = 6e-14
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
L + + F+ L L + L I + D F + + +VLT L + T
Sbjct: 45 LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT-ANPLIFMAETALSG 103
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
K L L + + + + K L +L L +N + +I
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144
Score = 64.7 bits (158), Expect = 2e-13
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
+D F L + ++ + L + + L + ++ I+ + N
Sbjct: 71 WIHEDTFQSQHRLDTLVLTA--NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL--YTLNLK 118
+ ++ L G ++S+ +KL L+ Q N + YL + SL++ +LNL
Sbjct: 129 KTLESLYL-GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187
Query: 119 NNQLENI 125
N + I
Sbjct: 188 GNDIAGI 194
Score = 62.0 bits (151), Expect = 2e-12
Identities = 23/124 (18%), Positives = 45/124 (36%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
++ L+ + +S+ + + NL L ++ L + L ++ F
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L + + F++ L L L + L E LF+ L L LNL+ N
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 123 ENIT 126
Sbjct: 462 PKGN 465
Score = 58.1 bits (141), Expect = 4e-11
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ F LQ + ++ L ELPSGL L L ++L + L N +
Sbjct: 270 SSNTFHCFSGLQELDLTA--THLSELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPS 326
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN--LFESLKELYTLNLKNN 120
+T++ + G+ K L + + + L +L+L + ++ +L L +LNL N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 121 QLENITR 127
+ ++
Sbjct: 387 EPLSLKT 393
Score = 57.3 bits (139), Expect = 6e-11
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Query: 2 FPKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
+ LF + LQ + + H + L L ++L ++ + F +
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ ++ L H +LTS K + L L N + + +L L + T+NL+ N
Sbjct: 500 KMMNHVDL-SHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557
Query: 121 QLE 123
L+
Sbjct: 558 PLD 560
Score = 56.6 bits (137), Expect = 1e-10
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 7/126 (5%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE---SSIAELPSDLFWN 59
+ F + L+V+ +S+ L LF LP L + L ++
Sbjct: 417 AQSPFQNLHLLKVLNLSH--SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
+ +VL L+S+ F K + ++L N+L LK +Y LNL +
Sbjct: 475 LGRLEILVL-SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLAS 532
Query: 120 NQLENI 125
N + I
Sbjct: 533 NHISII 538
Score = 56.6 bits (137), Expect = 1e-10
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPSDLFWNS 60
+ F E L+++ +++ LK + F NL LL + L S + LF
Sbjct: 391 LKTEAFKECPQLELLDLAF--TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448
Query: 61 TNITNIVLTG--HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 118
+ ++ L G K + + +L L L L + ++ F SLK + ++L
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508
Query: 119 NNQLENI 125
+N+L +
Sbjct: 509 HNRLTSS 515
Score = 54.6 bits (132), Expect = 5e-10
Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD-LFWNS 60
+ +LQ + +SY++ L + F P L + L + + + F N
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE---NLFESLKELYTLNL 117
+ + L H L LF L L LQ N N ++L L L L
Sbjct: 425 HLLKVLNL-SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 118 KNNQLENIT 126
L +I
Sbjct: 484 SFCDLSSID 492
Score = 51.9 bits (125), Expect = 4e-09
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 2/114 (1%)
Query: 13 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT-GH 71
Q + ++ L + + L + ++ +F ++ +
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263
Query: 72 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
++ S F L +L+L L LP L L L L L N+ EN+
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV-GLSTLKKLVLSANKFENL 316
Score = 49.2 bits (118), Expect = 4e-08
Identities = 14/127 (11%), Positives = 44/127 (34%), Gaps = 4/127 (3%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS- 60
K+ + ++ + ++ + + + + G F + + G ++ + L ++
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKK--LVKLELQRNKLKYLPENLFESLKELYTLNLK 118
++ + +F + + + LQ++ + N F L L+L
Sbjct: 228 QSLWLGTF-EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286
Query: 119 NNQLENI 125
L +
Sbjct: 287 ATHLSEL 293
Score = 45.8 bits (109), Expect = 6e-07
Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 6/128 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
K L+ + + + + + L + ++I L + +
Sbjct: 121 DFIPLHNQKTLESLYLGSNH--ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178
Query: 63 ITNIVL-TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKN 119
TN+ L + + F D L + +++ L+ ++
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237
Query: 120 NQLENITR 127
E+I+
Sbjct: 238 MDDEDISP 245
Score = 39.2 bits (92), Expect = 1e-04
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ L +P TL LE N L + F L L L+L Q+ I
Sbjct: 21 NLGLNEIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Score = 25.4 bits (56), Expect = 6.5
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ L +P L S + L N L I
Sbjct: 17 YNCENLGLNEIPGTLPNSTE---CLEFSFNVLPTI 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 67.5 bits (165), Expect = 2e-14
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
++ FA + V + + L S +F L L + L + I ++ + F+
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
N+ + L+ + L L S+ F K+ ++LQ+N + + + F+ L++L TL+L++N
Sbjct: 315 NLQVLNLS-YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373
Query: 122 LENIT 126
L I
Sbjct: 374 LTTIH 378
Score = 66.0 bits (161), Expect = 7e-14
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F ++ LQ++++ L + F NLP L + LG S I L D F +
Sbjct: 40 TASSFPFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98
Query: 63 ITNIVLTG-HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNN 120
+ + L L FR+ K L +L+L +N+++ L + F L L +++ +N
Sbjct: 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
Query: 121 QLENITR 127
Q+ +
Sbjct: 159 QIFLVCE 165
Score = 61.0 bits (148), Expect = 3e-12
Identities = 18/97 (18%), Positives = 38/97 (39%)
Query: 30 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89
+ + L ++L + I + + F + + L ++ FR+ L
Sbjct: 17 TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76
Query: 90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L+L +K+ +L + F+ L L+ L L L +
Sbjct: 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113
Score = 60.2 bits (146), Expect = 7e-12
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 5/123 (4%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN--TVILGESSIAELPSDLFWNSTNIT 64
++ +H +K+ FA L + + L + L S +F ++
Sbjct: 236 LILAHHIMGAGFGFHN--IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293
Query: 65 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
+ L + K+ + F L L L N L L + F L ++ ++L+ N +
Sbjct: 294 VLNLA-YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352
Query: 125 ITR 127
I
Sbjct: 353 IQD 355
Score = 57.1 bits (138), Expect = 7e-11
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 23 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN--STNITNIVLTGHKKLTSLPST 80
+++ + + + G +I + + F +++ ++ L+ H + SL S
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS-HGFVFSLNSR 284
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+F K L L L NK+ + + F L L LNL N L +
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Score = 51.0 bits (122), Expect = 9e-09
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 24 SLKELPSGLF-ANLPLLNTVILGESSIAELPSD-LFWNSTNITNIVLTG----HKKLTSL 77
L+ L F +P L +IL ++ + D + ++ + L T L
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Query: 78 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
+F L L L N L LP +F L L L+L +N+L ++
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520
Score = 48.6 bits (116), Expect = 6e-08
Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 25/145 (17%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
+ F + LQV+ +SY+ L EL S F LP + + L ++ IA + F
Sbjct: 305 IADEAFYGLDNLQVLNLSYNL--LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362
Query: 62 NITNIVLT------------------GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE 103
+ + L KL +LP + L N+L+ L
Sbjct: 363 KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDI 418
Query: 104 NLF-ESLKELYTLNLKNNQLENITR 127
F + L L L N+ + +
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSG 443
Score = 48.3 bits (115), Expect = 1e-07
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Query: 7 FAEMKYLQVIKISYHKDSLKELP-SGLFANLPLLNTVILGESSI-----AELPSDLFWNS 60
+ +LQ++ ++ ++ + P L + LGE+ + EL D+F
Sbjct: 422 LLRVPHLQILILNQNR--FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+++ + L H L SLP +F L L L N+L L N + L L++ N
Sbjct: 480 SHLQVLYLN-HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRN 536
Query: 121 QLENI 125
QL
Sbjct: 537 QLLAP 541
Score = 44.0 bits (104), Expect = 2e-06
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 26/126 (20%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
D F + +L +++ + S L G F NL L + L ++ I L
Sbjct: 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-------- 139
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL--KELYTLNLKN 119
F L ++ N++ + E+ E L K L +L
Sbjct: 140 ----------------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183
Query: 120 NQLENI 125
N L +
Sbjct: 184 NSLYSR 189
Score = 36.7 bits (85), Expect = 0.001
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 22/145 (15%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELP-SGLFANLPLLNTVILGESSIAELPSDLFWNST 61
F +K L + +S ++ ++ L F L L ++ + I +
Sbjct: 115 KDGYFRNLKALTRLDLSKNQ--IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172
Query: 62 NITNIVLT-GHKKLTSLPSTLFRDCKK------LVKLELQRNKLKYLPENLF-------- 106
T + L S S + C L L++ N F
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232
Query: 107 ----ESLKELYTLNLKNNQLENITR 127
+ + +++ +
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQ 257
Score = 34.4 bits (79), Expect = 0.007
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 29/115 (25%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
D+F + +LQV+ ++++ L LP G+F++L L + L + + L +
Sbjct: 471 LCWDVFEGLSHLQVLYLNHNY--LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL---- 524
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116
L L++ RN+L ++F SL L +
Sbjct: 525 -----------------------PANLEILDISRNQLLAPNPDVFVSLSVLDITH 556
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 67.0 bits (164), Expect = 2e-14
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P +L K L + + L+ L S F + P L + L I + + + +
Sbjct: 22 IPDNLPFSTKNLDL-----SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+++ ++LT + SL F L KL L L LK L LN+ +N
Sbjct: 77 HLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 122 LENI 125
+++
Sbjct: 136 IQSF 139
Score = 65.1 bits (159), Expect = 1e-13
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F LQV+ +S ++ + G + +L L+T+IL + I L F ++
Sbjct: 44 GSYSFFSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQ 121
+ +V L SL + K L +L + N ++ F +L L L+L +N+
Sbjct: 102 LQKLVA-VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 122 LENITR 127
+++I
Sbjct: 161 IQSIYC 166
Score = 61.7 bits (150), Expect = 2e-12
Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ + +L + ++ + ++ L G F+ L L ++ E+++A L + +
Sbjct: 68 EDGAYQSLSHLSTLILTGNP--IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 63 ITNIVLTGHKKLTSLP-STLFRDCKKLVKLELQRNKLKYLPENLFESLKEL----YTLNL 117
+ + + H + S F + L L+L NK++ + L ++ +L+L
Sbjct: 126 LKELNV-AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 118 KNNQLENI 125
N + I
Sbjct: 185 SLNPMNFI 192
Score = 59.3 bits (144), Expect = 1e-11
Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 65
F ++ L+ + + LK++ +F +L L + + + + +F +++
Sbjct: 392 FLGLEQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 66 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ + G+ + +F + + L L+L + +L+ L F SL L LN+ +NQL+++
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 57.4 bits (139), Expect = 5e-11
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWN 59
M +F ++ L + IS+ + +G+F L L + + +S E D+F
Sbjct: 411 MSEFSVFLSLRNLIYLDISH--THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
N+T + L +L L T F L L + N+LK +P+ +F+ L L + L
Sbjct: 469 LRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527
Query: 120 NQL 122
N
Sbjct: 528 NPW 530
Score = 56.6 bits (137), Expect = 9e-11
Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 3/121 (2%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
++ L+ + +S + S K S L + L + + + S+ F + ++
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL 401
Query: 67 VLTGHKKLTSLPST-LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L + +F + L+ L++ + +F L L L + N +
Sbjct: 402 DFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 126 T 126
Sbjct: 461 F 461
Score = 52.8 bits (127), Expect = 2e-09
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 40 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 99
T E + ++P +L + N+ L+ L L S F +L L+L R +++
Sbjct: 10 ITYQCMELNFYKIPDNLP---FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 100 YLPENLFESLKELYTLNLKNNQLENI 125
+ + ++SL L TL L N ++++
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSL 91
Score = 48.6 bits (116), Expect = 7e-08
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNS 60
F+ + LQ + L L + +L L + + + I + F N
Sbjct: 91 LALGAFSGLSSLQKLVAVETN--LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKL----VKLELQRNKLKYLPENLFESLKELYTLN 116
TN+ ++ L K+ S+ T R ++ + L+L N + ++ F+ ++ L+ L
Sbjct: 149 TNLEHLDL-SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206
Query: 117 LKNNQL 122
L+NN
Sbjct: 207 LRNNFD 212
Score = 40.1 bits (94), Expect = 6e-05
Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 8/131 (6%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLNTVILGESSIAELPSDLFWNS 60
+K L+ + ++++ ++ F+NL L + L + I +
Sbjct: 115 LENFPIGHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 61 TNITNIVLT---GHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLN 116
+ + L+ + + F++ +L KL L+ N + + + L L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231
Query: 117 LKNNQLENITR 127
L + N
Sbjct: 232 LVLGEFRNEGN 242
Score = 37.0 bits (86), Expect = 8e-04
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 13/130 (10%)
Query: 3 PKDLFAEMKYLQVIKISYHKDS----LKELPSGLFANLPLLNTVILGESSI---AELPSD 55
K + L+V ++ + L++ L L + + + D
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276
Query: 56 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 115
LF TN+++ L + + + LEL K P +SLK L
Sbjct: 277 LFNCLTNVSSFSLV-SVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLT-- 331
Query: 116 NLKNNQLENI 125
+N+ N
Sbjct: 332 -FTSNKGGNA 340
Score = 34.7 bits (80), Expect = 0.005
Identities = 24/147 (16%), Positives = 41/147 (27%), Gaps = 23/147 (15%)
Query: 2 FPKDLFAEMKYLQVIKISYHK-DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
F K + L + + D + LF L +++ L +I + +
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305
Query: 61 -----------TNITNIVLTG-------HKKLTSLPSTLFRDCKKLVKLELQRNKL--KY 100
+ L K + S D L L+L RN L K
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKG 363
Query: 101 LPENLFESLKELYTLNLKNNQLENITR 127
L L+L N + ++
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSS 390
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 67.1 bits (164), Expect = 3e-14
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD-LFWNST 61
D F + L+ + +S + L L S F L L + L + L LF N T
Sbjct: 66 EGDAFYSLGSLEHLDLSD--NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
N+ + + + + + F L +LE++ L+ +S+++++ L L ++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183
Query: 122 LENI 125
+
Sbjct: 184 SAFL 187
Score = 54.0 bits (130), Expect = 8e-10
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
S +PSGL A + L+ L + I + N+ ++L ++ ++ F
Sbjct: 16 SFTSIPSGLTAAMKSLD---LSFNKITYIGHGDLRACANLQVLIL-KSSRINTIEGDAFY 71
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L L+L N L L + F L L LNL N + +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114
Score = 52.8 bits (127), Expect = 2e-09
Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELP-SGLFANLPLLNTVILGES-SIAELPSDLFWN 59
F + L+ + + + + L + LF NL L T+ +G + +E+ F
Sbjct: 89 LSSSWFGPLSSLKYLNLMGNP--YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
T++ + + L + S + + + L L ++ +L E + L + L L++
Sbjct: 147 LTSLNELEI-KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 120 NQLENI 125
L
Sbjct: 206 TNLARF 211
Score = 51.3 bits (123), Expect = 9e-09
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
Query: 23 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
+ EL F + L S + + I + + L ST++
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFYLFYDLSTVY 306
Query: 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
+K+ ++ ++ +K+ +P + + LK L L+L N +
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Score = 50.5 bits (121), Expect = 2e-08
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 35 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 94
+ S +PS L + ++ L+ K+T + R C L L L+
Sbjct: 3 SCDASGVCDGRSRSFTSIPSGLT---AAMKSLDLS-FNKITYIGHGDLRACANLQVLILK 58
Query: 95 RNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+++ + + F SL L L+L +N L ++
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89
Score = 50.1 bits (120), Expect = 2e-08
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 2/123 (1%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 64
LF + LQ ++I + ++ E+ FA L LN + + S+ S + +I
Sbjct: 117 SLFPNLTNLQTLRIG-NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175
Query: 65 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
++ L + L + LEL+ L + + + +
Sbjct: 176 HLTL-HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234
Query: 125 ITR 127
+T
Sbjct: 235 LTD 237
Score = 47.8 bits (114), Expect = 1e-07
Identities = 20/145 (13%), Positives = 54/145 (37%), Gaps = 22/145 (15%)
Query: 1 MFPKDLFAEMKYLQVIKISYHK-DSLKELPSGLFANLPLLNTVILGESSIAELP--SDLF 57
+ P +K L+ + +S + S P L T++L ++ + + ++
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383
Query: 58 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY---- 113
N+T++ + +P + + +K+ L L ++ + + ++L+ L
Sbjct: 384 LTLKNLTSLDI-SRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN 441
Query: 114 -------------TLNLKNNQLENI 125
L + N+L+ +
Sbjct: 442 NLDSFSLFLPRLQELYISRNKLKTL 466
Score = 47.0 bits (112), Expect = 2e-07
Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 9/131 (6%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE---SSIAELPSDLFW 58
+++ ++ ++ I + K + +P +L L + L E S
Sbjct: 301 DLSTVYSLLEKVKRITVENSK--VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358
Query: 59 NSTNITNIVLTGHKKLTSLPST--LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116
++ +VL L S+ T + K L L++ RN +P++ + +++ LN
Sbjct: 359 AWPSLQTLVL-SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLN 416
Query: 117 LKNNQLENITR 127
L + + +
Sbjct: 417 LSSTGIRVVKT 427
Score = 46.6 bits (111), Expect = 4e-07
Identities = 18/98 (18%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
++ + + + L +L+ + +++ L + + ++ KL +LP
Sbjct: 422 IRVVKTCIPQTLEVLD---VSNNNLDSFSLFL----PRLQELYIS-RNKLKTLPDASL-- 471
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
L+ +++ RN+LK +P+ +F+ L L + L N
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 44.3 bits (105), Expect = 2e-06
Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 19 SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 78
++ + + + + + + S ++ + I + + K+ +P
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE-NSKVFLVP 326
Query: 79 STLFRDCKKLVKLELQRNKLKYLP---ENLFESLKELYTLNLKNNQLENITR 127
+ + K L L+L N + + L TL L N L ++ +
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378
Score = 43.6 bits (103), Expect = 4e-06
Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 64
++ +K L + IS ++ +P + + L + I + + + +
Sbjct: 381 EILLTLKNLTSLDISR--NTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIP---QTLE 434
Query: 65 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
+ ++ + L S L +L +L + RNKLK LP+ L + + NQL++
Sbjct: 435 VLDVS-NNNLDSFSLFL----PRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKS 487
Query: 125 I 125
+
Sbjct: 488 V 488
Score = 38.2 bits (89), Expect = 3e-04
Identities = 9/143 (6%), Positives = 43/143 (30%), Gaps = 19/143 (13%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
+ + ++ +++ +L + + + + L + F
Sbjct: 187 LLEIFADILSSVRYLELRDT--NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
Query: 62 NITNIVLT-----------------GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 104
+ +L + + + + +L + + L Y
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304
Query: 105 LFESLKELYTLNLKNNQLENITR 127
++ L+++ + ++N+++ +
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPC 327
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 63.4 bits (155), Expect = 8e-14
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L +P+G+ ++ L L + + LP +F T +T + L ++ SLP +F
Sbjct: 18 GLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSL-SQNQIQSLPDGVFD 73
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
KL L L NKL+ LP +F+ L +L L L NQL+++
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117
Score = 58.4 bits (142), Expect = 6e-12
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 21 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
+ L+ LP G+F L L + L ++ I LP +F T +T + L KL SLP+
Sbjct: 36 ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL-HENKLQSLPNG 94
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+F +L +L L N+LK +P+ +F+ L L + L N
Sbjct: 95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 65.4 bits (160), Expect = 1e-13
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P F L + + ++ + +L L LP+L + L + +++L F T
Sbjct: 40 LPAANFTRYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
N+T + L + + + + F K L+ L+L N L L+ L L L NN+
Sbjct: 98 NLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156
Query: 122 LENI 125
++ +
Sbjct: 157 IQAL 160
Score = 64.3 bits (157), Expect = 2e-13
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L+ LP+ F L ++ +G ++I++L +L + + L H +L+ L F
Sbjct: 36 QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ-HNELSQLSDKTFA 94
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
C L +L L N ++ + N F K L TL+L +N L +
Sbjct: 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 63.9 bits (156), Expect = 3e-13
Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL--LNTVILGESSIAELPSDLFWN 59
++F + L+ + +S SL+ L + F +L L+ + L ++ I+++ SD F
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
++ + L ++ L +R + + ++ L NK L N F + L L L+
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463
Query: 120 NQLENITR 127
L+N+
Sbjct: 464 VALKNVDS 471
Score = 58.9 bits (143), Expect = 2e-11
Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 12/135 (8%)
Query: 2 FPKDLFAEMKY--LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 59
F +K+ L ++ +SY+ L + + FA LP L L ++I L S
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294
Query: 60 STNITNIVLTG--------HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 111
N+ + L L + F+ K L L ++ N + + N+F L
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354
Query: 112 LYTLNLKNNQLENIT 126
L L+L N+ T
Sbjct: 355 LKYLSLSNSFTSLRT 369
Score = 58.5 bits (142), Expect = 3e-11
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 5/122 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
FA L + + + ++++ + F L T+ L + ++ N
Sbjct: 89 SDKTFAFCTNLTELHLMSNS--IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCK--KLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ ++L + K+ +L S L KLEL N++K F ++ L+ L L N
Sbjct: 147 LQELLL-SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 121 QL 122
QL
Sbjct: 206 QL 207
Score = 56.5 bits (137), Expect = 1e-10
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 13/135 (9%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS--DLFWN 59
+ ++ + I +SY+K +L FA +P L ++L ++ + S F
Sbjct: 421 LTGQEWRGLENIFEIYLSYNK--YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN--------LFESLKE 111
N+T + L + + ++ + +KL L+LQ N L L ++ + L
Sbjct: 479 LRNLTILDL-SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537
Query: 112 LYTLNLKNNQLENIT 126
L+ LNL++N + I
Sbjct: 538 LHILNLESNGFDEIP 552
Score = 56.2 bits (136), Expect = 1e-10
Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 2 FPKDLFAEMKYLQVIKISY------HKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 55
D+ ++ L+++ + + K + P L L+ + L + E+P +
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554
Query: 56 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE-SLKELYT 114
+F + + I L G L +LP+++F + L L LQ+N + + + +F + + L
Sbjct: 555 VFKDLFELKIIDL-GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613
Query: 115 LNLKNNQLE 123
L+++ N +
Sbjct: 614 LDMRFNPFD 622
Score = 55.8 bits (135), Expect = 2e-10
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L ++P L N+ +LN L + + LP+ F + +T++ + + ++ L L +
Sbjct: 15 KLTQVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQ 70
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L L LQ N+L L + F L L+L +N ++ I
Sbjct: 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Score = 55.0 bits (133), Expect = 3e-10
Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD--------L 56
F ++ L ++ +S + + + + L L + L +++A L
Sbjct: 474 SPFQPLRNLTILDLSNNN--IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531
Query: 57 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116
+++ + L +P +F+D +L ++L N L LP ++F + L +LN
Sbjct: 532 LKGLSHLHILNL-ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590
Query: 117 LKNNQLENI 125
L+ N + ++
Sbjct: 591 LQKNLITSV 599
Score = 55.0 bits (133), Expect = 4e-10
Identities = 27/128 (21%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
D F+ + +L+V+ + ++ +EL + L + + L + +L + F
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454
Query: 62 NITNIVLTG--HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
++ ++L K + S PS F+ + L L+L N + + +++ E L++L L+L++
Sbjct: 455 SLQRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513
Query: 120 NQLENITR 127
N L + +
Sbjct: 514 NNLARLWK 521
Score = 51.9 bits (125), Expect = 5e-09
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 39 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 98
+ ++P DL TNIT + LT H +L LP+ F +L L++ N +
Sbjct: 6 HEVADCSHLKLTQVPDDLP---TNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 99 KYLPENLFESLKELYTLNLKNNQLENI 125
L L + L L LNL++N+L +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQL 88
Score = 50.8 bits (122), Expect = 1e-08
Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ F + K L + +S+ + L G L L ++L + I L S+ N
Sbjct: 113 KNNPFVKQKNLITLDLSH--NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170
Query: 63 ITNIVLT-GHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFE--SLKELYTLNLK 118
+ L ++ F +L L L +L L E L + + L+L
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230
Query: 119 NNQLENI 125
N+QL
Sbjct: 231 NSQLSTT 237
Score = 50.0 bits (120), Expect = 2e-08
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 12/136 (8%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL--LNTVILGESSIAELPSDLFWNS 60
+ L E+ + +S L + F L L + L +++ + +D F
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN---------KLKYLPENLFESLKE 111
+ L + + L S + L L+R+ L + + F+ LK
Sbjct: 272 PQLEYFFL-EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330
Query: 112 LYTLNLKNNQLENITR 127
L LN+++N + I
Sbjct: 331 LEHLNMEDNDIPGIKS 346
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 64.7 bits (158), Expect = 2e-13
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
LK L S F+N L + L I + + +++N++LTG+ + S F
Sbjct: 43 PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFS 101
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L L KL L L L LN+ +N + +
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143
Score = 62.0 bits (151), Expect = 1e-12
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 4/124 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F+ LQ + +S ++ + + L L+ +IL + I F T+
Sbjct: 48 KSYSFSNFSELQWLDLSR--CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQ 121
+ N+V KL SL S L KL + N + F +L L ++L N
Sbjct: 106 LENLVA-VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 122 LENI 125
++ I
Sbjct: 165 IQTI 168
Score = 59.7 bits (145), Expect = 9e-12
Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 65
F ++ LQ + + LK + F +L L + + ++ +F T++
Sbjct: 395 FMGLEELQHLDFQHST--LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452
Query: 66 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ + G+ + S +F + L L+L + +L+ + +F++L L LN+ +N L +
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512
Score = 59.3 bits (144), Expect = 1e-11
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWN 59
+ F ++ L + ISY + K G+F L LNT+ + +S + S++F N
Sbjct: 414 VTEFSAFLSLEKLLYLDISY--TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
+TN+T + L+ +L + +F +L L + N L +L + + L L TL+
Sbjct: 472 TTNLTFLDLS-KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530
Query: 120 NQLENI 125
N++E
Sbjct: 531 NRIETS 536
Score = 58.5 bits (142), Expect = 2e-11
Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
+ +F + L +K++ + S +FAN L + L + + ++ +F
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFK-DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ + + H L L S+ + L L+ N+++ L K L NL NN
Sbjct: 497 HRLQLLNM-SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Query: 121 QL 122
+
Sbjct: 556 SV 557
Score = 58.5 bits (142), Expect = 3e-11
Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ + +L + ++ + ++ G F+ L L ++ E+ +A L S
Sbjct: 72 EDKAWHGLHHLSNLILTGNP--IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129
Query: 63 ITNIVLTGHKKLTSLP-STLFRDCKKLVKLELQRNKLKYLPENLFESLKEL----YTLNL 117
+ + + H + S F + LV ++L N ++ + N + L+E +L++
Sbjct: 130 LKKLNV-AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188
Query: 118 KNNQLENI 125
N ++ I
Sbjct: 189 SLNPIDFI 196
Score = 51.2 bits (123), Expect = 8e-09
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 40 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 99
T + ++++P D+ ++ NI L+ L L S F + +L L+L R +++
Sbjct: 14 ITYQCMDQKLSKVPDDIP---SSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEIE 69
Query: 100 YLPENLFESLKELYTLNLKNNQLENI 125
+ + + L L L L N +++
Sbjct: 70 TIEDKAWHGLHHLSNLILTGNPIQSF 95
Score = 48.5 bits (116), Expect = 7e-08
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 5/121 (4%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITN 65
+ L + +S + L +++L + L S + S F + +
Sbjct: 346 KVALPSLSYLDLSRNA--LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403
Query: 66 IVLTGHKKLTSLPST-LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
+ H L + F +KL+ L++ K + +F L L TL + N ++
Sbjct: 404 LDF-QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462
Query: 125 I 125
Sbjct: 463 N 463
Score = 45.8 bits (109), Expect = 7e-07
Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNS 60
F F+ + L+ + L L S L L + + + I F N
Sbjct: 95 FSPGSFSGLTSLENLVAVET--KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKL----VKLELQRNKLKYLPENLFESLKELYTLN 116
TN+ ++ L + + ++ + ++ + L++ N + ++ + F+ +K L+ L
Sbjct: 153 TNLVHVDL-SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELT 210
Query: 117 LKNNQL 122
L+ N
Sbjct: 211 LRGNFN 216
Score = 41.2 bits (97), Expect = 3e-05
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 12/129 (9%)
Query: 3 PKDLFAEMKYLQVIKISYHK----DSLKELPSGLFANLPLLNTVILGES--SIAELPSDL 56
K + L V ++ + +L+ + L + + +
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 57 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116
F N++ + L + L K L + R +LK P L L +L
Sbjct: 281 FHCLANVSAMSLA-GVSIKYLEDVPK--HFKWQSLSIIRCQLKQFP---TLDLPFLKSLT 334
Query: 117 LKNNQLENI 125
L N+
Sbjct: 335 LTMNKGSIS 343
Score = 40.8 bits (96), Expect = 3e-05
Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 18/145 (12%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
+F + + + + + + F L ++ + L SI L
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308
Query: 61 --------TNITNIVLTGHKKLTSL--------PSTLFRDCKKLVKLELQRNKLKYLPEN 104
+ L SL S L L+L RN L +
Sbjct: 309 WQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCC 368
Query: 105 LFESLK--ELYTLNLKNNQLENITR 127
+ L L L+L N ++
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMSA 393
Score = 39.6 bits (93), Expect = 9e-05
Identities = 9/109 (8%), Positives = 27/109 (24%), Gaps = 7/109 (6%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT-----NIVLTGHKKLTSLP 78
+ + F + L + G + + + N + + L
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251
Query: 79 STLFRDCKKLVKLEL--QRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
++ + E F L + ++L ++ +
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300
Score = 27.3 bits (61), Expect = 1.3
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 89 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+ + KL +P+++ S K + L N L+ +
Sbjct: 14 ITYQCMDQKLSKVPDDIPSSTKNID---LSFNPLKILKS 49
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 62.8 bits (153), Expect = 3e-13
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
+P+G+ N +L L ++ I +L +F + N+ + L +L +LP +F
Sbjct: 30 RHASVPAGIPTNAQILY---LHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFD 85
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+L L+L N+L LP +F+ L L L + N+L + R
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR 129
Score = 62.4 bits (152), Expect = 4e-13
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 21 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
H + + +L G+F +L L + LG + + LP +F + T +T + L + +LT LPS
Sbjct: 48 HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSA 106
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+F L +L + NKL LP E L L L L NQL++I
Sbjct: 107 VFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPH 152
Score = 54.7 bits (132), Expect = 2e-10
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+F + L+ + + ++ L LP G+F +L L + LG + + LPS +F +
Sbjct: 56 EPGVFDSLINLKELYLGSNQ--LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ + + KLT LP L L L +N+LK +P F+ L L L N
Sbjct: 114 LKELFM-CCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 63.5 bits (155), Expect = 3e-13
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
PK +F+ ++ + I++ + G F L L + + E+ + +P DL
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN-YLRISEAKLTGIPKDLP---ET 194
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + L H K+ ++ KL +L L N+++ + L L L+L NN+L
Sbjct: 195 LNELHL-DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253
Query: 123 ENI 125
+
Sbjct: 254 SRV 256
Score = 62.3 bits (152), Expect = 1e-12
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
LK +P + + LL+ L + I+EL D F ++ +VL + K++ + F
Sbjct: 44 GLKAVPKEISPDTTLLD---LQNNDISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFS 99
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+KL KL + +N L +P NL SL EL + +N++ +
Sbjct: 100 PLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIRKV 138
Score = 60.8 bits (148), Expect = 3e-12
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 8/125 (6%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
F F +K L ++IS K L +P L L L+ L + I + +
Sbjct: 163 GFEPGAFDGLK-LNYLRISEAK--LTGIPKDLPETLNELH---LDHNKIQAIELEDLLRY 216
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ + + L GH ++ + + L +L L NKL +P LK L + L N
Sbjct: 217 SKLYRLGL-GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTN 274
Query: 121 QLENI 125
+ +
Sbjct: 275 NITKV 279
Score = 56.9 bits (138), Expect = 6e-11
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 32/149 (21%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ F+ ++ LQ + IS + L E+P L ++L L + ++ I ++P +F N
Sbjct: 94 HEKAFSPLRKLQKLYISKNH--LVEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRN 148
Query: 63 ITNIVLTG------------------------HKKLTSLPSTLFRDCKKLVKLELQRNKL 98
+ I + G KLT +P L L +L L NK+
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKI 205
Query: 99 KYLPENLFESLKELYTLNLKNNQLENITR 127
+ + +LY L L +NQ+ I
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Score = 56.9 bits (138), Expect = 8e-11
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 8/109 (7%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
++ + L + LG + I + + + + L + KL+ +P+
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD-NNKLSRVPAG-LP 261
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKE------LYTLNLKNNQLENIT 126
D K L + L N + + N F + ++L NN +
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310
Score = 53.1 bits (128), Expect = 2e-09
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 24 SLKELPSGLFANLPL-----LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 78
L LP A P L V + + +P ++ S + T + L + ++ L
Sbjct: 15 DLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQ-NNDISELR 70
Query: 79 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
F+ + L L L NK+ + E F L++L L + N L I
Sbjct: 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Score = 52.3 bits (126), Expect = 3e-09
Identities = 16/127 (12%), Positives = 45/127 (35%), Gaps = 12/127 (9%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+ L + + +++ ++ + +G + LP L + L + ++ +P+ L +
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQ--IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP-DLKL 265
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCK------KLVKLELQRNKLKY--LPENLFESLKELYT 114
+ + L +T + F + L N + Y + F + +
Sbjct: 266 LQVVYL-HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324
Query: 115 LNLKNNQ 121
+ N +
Sbjct: 325 IQFGNYK 331
Score = 28.1 bits (63), Expect = 0.71
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 69 TGHKKLTSLPSTLFRDCKK-----LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
+G L SLP T C L ++ LK +P+ + L L+NN +
Sbjct: 11 SGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLD---LQNNDIS 67
Query: 124 NITR 127
+ +
Sbjct: 68 ELRK 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 62.7 bits (153), Expect = 3e-13
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 25 LKELPSGLFANLPLLNTVILGES-SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L+ +PS F+NLP ++ + + ++ +L S F+N + +T+I + + LT + +
Sbjct: 43 LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102
Query: 84 DCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNL-KNNQLENI 125
+ L L + LK P+ S + L + N + +I
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146
Score = 58.1 bits (141), Expect = 2e-11
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 25 LKELPSGLFANLP-LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
+ +P F L T+ L + + F N T + + L +K LT + F
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFG 201
Query: 84 D-CKKLVKLELQRNKLKYLPENLFESLKELYTLNL 117
L++ + + LP E LKEL N
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 56.9 bits (138), Expect = 4e-11
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
++ +PS P T+ L E+ + +PS F N NI+ I ++ L L S F
Sbjct: 22 DIQRIPSLP----PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77
Query: 84 DCKKLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQLENI 125
+ K+ +E++ + L Y+ + + L L L + N L+
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120
Score = 52.3 bits (126), Expect = 2e-09
Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 28/150 (18%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F + + I+I + +L + LPLL + + + + P ST+
Sbjct: 72 ESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130
Query: 63 I-TNIVLTGHKKLTSLPSTLFRDCK------------------------KLVKLELQRNK 97
I + +T + +TS+P F+ KL + L +NK
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190
Query: 98 -LKYLPENLFESLKE-LYTLNLKNNQLENI 125
L + ++ F + L++ + +
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 61.6 bits (150), Expect = 6e-13
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 29 PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88
GLF LP L + L + + + + F +++I + L +K + + + +F +L
Sbjct: 46 SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQL 104
Query: 89 VKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
L L N++ + FE L L +LNL +N
Sbjct: 105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 60.0 bits (146), Expect = 2e-12
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSD-LFWNSTNITNIVLTGHKKLTSLPSTLF 82
LKE+P + + L L ++ + + SD LF ++ + L +LT + F
Sbjct: 19 GLKEIPRDIPLHTTELL---LNDNELGRISSDGLFGRLPHLVKLEL-KRNQLTGIEPNAF 74
Query: 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+ +L+L NK+K + +F L +L TLNL +NQ+ +
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 60.1 bits (145), Expect = 6e-12
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 57 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116
+ N+T + + + L L R +L L + ++ L+++ + F L LN
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 117 LKNNQLENI 125
L N LE++
Sbjct: 87 LSFNALESL 95
Score = 53.2 bits (127), Expect = 2e-09
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 4/107 (3%)
Query: 17 KISYHKDSLKELPSGLFANLPLLNTVIL-GESSIAELPSDLFWNSTNITNIVLTGHKKLT 75
+ +D + L + + + + L + N+ + L
Sbjct: 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLR 69
Query: 76 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ F +L +L L N L+ L + L L L L N L
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
Score = 43.2 bits (101), Expect = 5e-06
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 64 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQL 122
++ + + L +L ++ + L++L L EL L + + L
Sbjct: 10 SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68
Query: 123 ENITR 127
+
Sbjct: 69 RFVAP 73
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 57.7 bits (140), Expect = 2e-11
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 21 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
+ +P +N L + L + I+ L + F N T + ++L + +L +P
Sbjct: 39 DGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL-SYNRLRCIPPR 96
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
F K L L L N + +PE F L L L + N L
Sbjct: 97 TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 57.3 bits (139), Expect = 2e-11
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
LK LP G+ ++ L L + +P + N ++T I L + ++++L + F
Sbjct: 21 GLKVLPKGIPRDVTELY---LDGNQFTLVPKE-LSNYKHLTLIDL-SNNRISTLSNQSFS 75
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+ +L+ L L N+L+ +P F+ LK L L+L N + +
Sbjct: 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 58.5 bits (142), Expect = 2e-11
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F LQV+ +S ++ + G + +L L+T+IL + I L F ++
Sbjct: 44 GSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQ 121
+ +V L SL + K L +L + N ++ F +L L L+L +N+
Sbjct: 102 LQKLVA-VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 122 LENI 125
+++I
Sbjct: 161 IQSI 164
Score = 57.7 bits (140), Expect = 4e-11
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L+ L S F + P L + L I + + + ++++ ++LT + SL F
Sbjct: 39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFS 97
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L KL L L LK L LN+ +N +++
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Score = 57.0 bits (138), Expect = 9e-11
Identities = 18/98 (18%), Positives = 43/98 (43%)
Query: 28 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 87
+F +L L + + + + +F +++ + + G+ + +F + +
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 88 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L L+L + +L+ L F SL L LN+ +N ++
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Score = 56.6 bits (137), Expect = 1e-10
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 4/126 (3%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWN 59
M +F ++ L + IS+ + +G+F L L + + +S E D+F
Sbjct: 411 MSEFSVFLSLRNLIYLDISH--THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
N+T + L +L L T F L L + N L ++ L L L+
Sbjct: 469 LRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527
Query: 120 NQLENI 125
N +
Sbjct: 528 NHIMTS 533
Score = 53.9 bits (130), Expect = 8e-10
Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 1/116 (0%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
++ L+ + +S + S K S L + L + + + S+ F + ++
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL 401
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
++F + L+ L++ + +F L L L + N
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Score = 50.0 bits (120), Expect = 2e-08
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
+F + L+V+K++ + + +F L L + L + + +L F + +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL-KELYTLNLKNN 120
++ + + H SL + ++ L L+ N + + + L LNL N
Sbjct: 495 SLQVLNM-SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Query: 121 QL 122
Sbjct: 554 DF 555
Score = 44.6 bits (106), Expect = 2e-06
Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNS 60
F+ + LQ + +L L + +L L + + + I + F N
Sbjct: 91 LALGAFSGLSSLQKLVAVE--TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKL----VKLELQRNKLKYLPENLFESLKELYTLN 116
TN+ ++ L K+ S+ T R ++ + L+L N + ++ F+ ++ L+ L
Sbjct: 149 TNLEHLDL-SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206
Query: 117 LKNNQLE 123
L+NN
Sbjct: 207 LRNNFDS 213
Score = 44.6 bits (106), Expect = 2e-06
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 41 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 100
T E + ++P +L + N+ L+ L L S F +L L+L R +++
Sbjct: 11 TYQCMELNFYKIPDNLP---FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 101 LPENLFESLKELYTLNLKNNQLENI 125
+ + ++SL L TL L N ++++
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSL 91
Score = 43.9 bits (104), Expect = 3e-06
Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNI 63
L+ + +S++ + + S F L L + S++ ++ +F + N+
Sbjct: 367 QSDFGTTSLKYLDLSFNG--VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 64 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNLKNNQL 122
+ + H + +F L L++ N + ++F L+ L L+L QL
Sbjct: 424 IYLDI-SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 123 ENIT 126
E ++
Sbjct: 483 EQLS 486
Score = 36.2 bits (84), Expect = 0.002
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 12/125 (9%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 64
DLF + + + +++ + F+ + L + P+ + +T
Sbjct: 276 DLFNCLTNVSSFSLVS--VTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331
Query: 65 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE--NLFESLKELYTLNLKNNQL 122
G + D L L+L RN L + L L+L N +
Sbjct: 332 FTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 123 ENITR 127
++
Sbjct: 386 ITMSS 390
Score = 35.0 bits (81), Expect = 0.003
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 10/127 (7%)
Query: 3 PKDLFAEMKYLQVIKISYHK----DSLKELPSGLFANLPLLNTVILGESSI---AELPSD 55
K + L+V ++ + +L++ L L + + + D
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276
Query: 56 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 115
LF TN+++ L + + F LEL K P +SLK L
Sbjct: 277 LFNCLTNVSSFSLV-SVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333
Query: 116 NLKNNQL 122
+ K
Sbjct: 334 SNKGGNA 340
Score = 33.5 bits (77), Expect = 0.014
Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 10/128 (7%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVI----LGESSIAELPSDLFWNS 60
+ F+ + L+ + +S +K ++ + L + + L + + + F
Sbjct: 143 EYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KE 199
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK---YLPENLFESLKELYTLNL 117
+ + L + ++ T + L L + + L + +L+ L L +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Query: 118 KNNQLENI 125
+ +L +
Sbjct: 260 EEFRLAYL 267
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 58.3 bits (141), Expect = 3e-11
Identities = 25/136 (18%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA-NLPLLNTVILGESSIAELPSDLFWNS 60
P+D A ++ + S++K LK +P+ A ++ ++ +V + I ++ +
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNK--LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667
Query: 61 TNITNIVLT----GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL-------FESL 109
+ I + + ++ P+ LF + + L N + +PEN +++
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727
Query: 110 KELYTLNLKNNQLENI 125
L T++L+ N+L ++
Sbjct: 728 YLLTTIDLRFNKLTSL 743
Score = 56.0 bits (135), Expect = 2e-10
Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS-TNITN 65
F L +K+ Y++ ++E+P A + + + + +P+ S + +
Sbjct: 591 FGTNVKLTDLKLDYNQ--IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648
Query: 66 IVLTGHKKLTSLPSTLFRD-----CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ + K+ S + + L N+++ P LF + + T+ L NN
Sbjct: 649 VDF-SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Query: 121 QLENI 125
+ +I
Sbjct: 708 LMTSI 712
Score = 52.2 bits (125), Expect = 4e-09
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 14 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNSTNITNIVLTGHK 72
+ I + K L P + +G +++ E P S + + H
Sbjct: 526 RGISAAQLKADWTRLAD-DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC-VHN 583
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
K+ L + F KL L+L N+++ +PE+ ++ L +N+L+ I
Sbjct: 584 KVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634
Score = 50.3 bits (120), Expect = 2e-08
Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 25 LKELPSGLFANLPLLN-----TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 79
+ + ++ TV L + I + P++LF + I+ I+L+ + +TS+P
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS-NNLMTSIPE 714
Query: 80 TL-------FRDCKKLVKLELQRNKLKYLPENL-FESLKELYTLNLKNNQLENI 125
+++ L ++L+ NKL L ++ +L L +++ N +
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768
Score = 47.6 bits (113), Expect = 2e-07
Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGL-FANLPLLNTVILGESSIAELPSDLFWNSTNIT- 64
+ L I + ++K L L LP L+ + + + + P+ NS+ +
Sbjct: 724 YKNTYLLTTIDLRFNK--LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL-NSSQLKA 780
Query: 65 -----NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
G++ L P+ C L++L++ N ++ + E L L L++ +
Sbjct: 781 FGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSNDIRKVDEKLTPQLYI---LDIAD 836
Query: 120 NQLENI 125
N +I
Sbjct: 837 NPNISI 842
Score = 46.0 bits (109), Expect = 5e-07
Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 17/128 (13%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
+ LQ+I + + + E+ + N ++T++
Sbjct: 444 IQRLTKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYENEELS-----WSNLKDLTDV 496
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE---------NLFESLKELYTLNL 117
L +T LP L+ D +L L + N+ + + ++ ++ +
Sbjct: 497 ELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555
Query: 118 KNNQLENI 125
N LE
Sbjct: 556 GYNNLEEF 563
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/125 (11%), Positives = 36/125 (28%), Gaps = 11/125 (8%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFA-----NLPLLNTVILGESSIAELPSDLFWNST 61
+ YL + +SY+ P+ + + + I
Sbjct: 749 ATTLPYLSNMDVSYNC--FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
++ + + G + + L +L L++ N + E L ++
Sbjct: 807 SLIQLQI-GSNDIRKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
Query: 122 LENIT 126
++I
Sbjct: 863 TQDIR 867
Score = 35.2 bits (81), Expect = 0.003
Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 3/124 (2%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
++L +M + +I H + LL I + + D +
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ LT ++T + + KL + + Y + N+
Sbjct: 427 DTQIGNLTN--RITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483
Query: 122 LENI 125
+
Sbjct: 484 ELSW 487
Score = 32.9 bits (75), Expect = 0.017
Identities = 8/50 (16%), Positives = 14/50 (28%)
Query: 76 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
P + ++ L L K + L EL L+ +
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Score = 27.9 bits (62), Expect = 1.1
Identities = 12/104 (11%), Positives = 31/104 (29%), Gaps = 2/104 (1%)
Query: 23 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
D + P N + + L D T + + H T
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFG 367
Query: 83 RDCKKLVKLELQRNKLKYLPENLF-ESLKELYTLNLKNNQLENI 125
+ E ++++++ + +F + + L +L + +
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 54.9 bits (133), Expect = 1e-10
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
++T L +F +L +L+L N+L LP +F+ L +L L+L +NQL++I R
Sbjct: 41 QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95
Score = 53.4 bits (129), Expect = 4e-10
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
SL +P+G+ +L L ++ I +L +F T +T + L + +LT LP+ +F
Sbjct: 20 SLASVPTGIPTTTQVLY---LYDNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFD 75
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+L +L L N+LK +P F++LK L + L NN
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 45.7 bits (109), Expect = 3e-07
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 72 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
K L S+P+ + + L L N++ L +F+ L +L L+L NNQL
Sbjct: 19 KSLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 54.2 bits (131), Expect = 2e-10
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L +P+G+ + L L + I +L +F + N+ + KLT++P+ +F
Sbjct: 23 RLASVPAGIPTDKQRLW---LNNNQITKLEPGVFDHLVNLQQLYF-NSNKLTAIPTGVFD 78
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+L +L+L N LK +P F++LK L + L NN
Sbjct: 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 54.2 bits (131), Expect = 2e-10
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
++T L +F L +L NKL +P +F+ L +L L+L +N L++I R
Sbjct: 44 QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR 98
Score = 45.3 bits (108), Expect = 5e-07
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+L S+P+ + D ++L L N++ L +F+ L L L +N+L
Sbjct: 22 IRLASVPAGIPTDKQRL---WLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 54.2 bits (131), Expect = 7e-10
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 32 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91
+ N + +SS+ + + L ++ N+ + L L+ + + KL L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDL-SGNPLSQISAADLAPFTKLELL 63
Query: 92 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L N L + ESL L TL+L NN ++ +
Sbjct: 64 NLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL 95
Score = 51.9 bits (125), Expect = 4e-09
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
+ L + + L + I + ++L +S + ++ L + + + +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL-QYNFIYDVKGQVV- 189
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
KL L+L NKL ++ F+S + ++L+NN+L I
Sbjct: 190 -FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI 229
Score = 50.0 bits (120), Expect = 2e-08
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 54 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 113
++ N +T L ++L + + +L+L N L + +L
Sbjct: 3 HEIKQNGNRYKIEKVT-DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 114 TLNLKNNQLENI 125
LNL +N L
Sbjct: 62 LLNLSSNVLYET 73
Score = 48.8 bits (117), Expect = 5e-08
Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 23/141 (16%)
Query: 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 63
++ ++ K++ LK+ + L + + + L + ++++ + T +
Sbjct: 3 HEIKQNGNRYKIEKVTDSS--LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 64 TNIVLTGHKKLTSLPS-----------------TLFRDCKKLVKLELQRNKLKYLPENLF 106
+ L L + L N + + +
Sbjct: 61 ELLNL-SSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119
Query: 107 ESLKELYTLNLKNNQLENITR 127
+ K +Y L NN++ +
Sbjct: 120 QGKKNIY---LANNKITMLRD 137
Score = 47.7 bits (114), Expect = 1e-07
Identities = 16/142 (11%), Positives = 46/142 (32%), Gaps = 25/142 (17%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
L ++ + +S + L ++ + A L + L + + E + +
Sbjct: 26 LASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81
Query: 63 ITNIVLTG------------------HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 104
+ + L + ++ + + + + L NK+ L +
Sbjct: 82 LRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDL 138
Query: 105 LFESLKELYTLNLKNNQLENIT 126
+ L+LK N+++ +
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVN 160
Score = 47.3 bits (113), Expect = 1e-07
Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-STLF 82
++ + + L + I L + + + L ++ ++ + L
Sbjct: 110 NISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDL-KLNEIDTVNFAELA 165
Query: 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L L LQ N + + + +L TL+L +N+L +
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM 206
Score = 47.3 bits (113), Expect = 2e-07
Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 8/127 (6%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLNTVILGESSIAELPSDLFWN 59
M +Q + + ++ + + L A+ L + L + I ++ + +
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF- 190
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
+ + L KL + F+ + + L+ NKL + + + L +L+
Sbjct: 191 -AKLKTLDL-SSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRG 246
Query: 120 NQLENIT 126
N T
Sbjct: 247 NGFHCGT 253
Score = 43.8 bits (104), Expect = 3e-06
Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
+ L+ + ++ + ++EL P + T+ ++I+ + NI
Sbjct: 76 LESLSTLRTLDLNNNY--VQELL-----VGPSIETLHAANNNISRVSCSRG---QGKKNI 125
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQLENI 125
L + K+T L ++ L+L+ N++ + L S L LNL+ N + ++
Sbjct: 126 YL-ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
Score = 35.0 bits (81), Expect = 0.003
Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+L A L+ + + Y+ + ++ + L T+ L + +A + + F ++
Sbjct: 161 FAELAASSDTLEHLNLQYNF--IYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAG 215
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQ 121
+T I L + KL + R + L +L+ N + F + + T+ + +
Sbjct: 216 VTWISL-RNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 52.0 bits (125), Expect = 5e-09
Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLF-WNSTNITNIVLTG-------HKKLT 75
+ E+P+ + + + + +P+ + + ++ I + K
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423
Query: 76 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L T F+ + + L N++ P+ LF + L ++NL N L I
Sbjct: 424 PLDPTPFK-GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472
Score = 49.7 bits (119), Expect = 3e-08
Identities = 25/138 (18%), Positives = 62/138 (44%), Gaps = 18/138 (13%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFA-NLPLLNTVILGESSIAELPSDLF---- 57
P + + ++ + +++K LK +P+ A ++ +++ + + I + F
Sbjct: 369 PANFCGFTEQVENLSFAHNK--LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426
Query: 58 ---WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL-------FE 107
+ N+++I L + +++ P LF L + L N L +P+N F+
Sbjct: 427 PTPFKGINVSSINL-SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485
Query: 108 SLKELYTLNLKNNQLENI 125
+ L +++L+ N+L +
Sbjct: 486 NTYLLTSIDLRFNKLTKL 503
Score = 46.6 bits (111), Expect = 4e-07
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 19 SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 78
S + L F ++++ L + I++ P +LF + +++I L LT +P
Sbjct: 416 SVDGKNFDPLDPTPF-KGINVSSINLSNNQISKFPKELFSTGSPLSSINL-MGNMLTEIP 473
Query: 79 STL-------FRDCKKLVKLELQRNKLKYLPENL-FESLKELYTLNLKNNQLENI 125
F++ L ++L+ NKL L ++ +L L ++L N
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528
Score = 44.3 bits (105), Expect = 2e-06
Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 14/126 (11%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGL-FANLPLLNTVILGESSIAELPSDLFWNSTNIT- 64
F L I + ++K L +L LP L + L +S ++ P+ NS+ +
Sbjct: 484 FKNTYLLTSIDLRFNK--LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLKG 540
Query: 65 -----NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
G++ L P + C L +L++ N ++ + E + ++ L++K+
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITL-CPSLTQLQIGSNDIRKVNEKITPNIS---VLDIKD 596
Query: 120 NQLENI 125
N +I
Sbjct: 597 NPNISI 602
Score = 43.5 bits (103), Expect = 4e-06
Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 9/126 (7%)
Query: 7 FAEMKYLQVIKISY-HKDSLKELPSGL-----FANLPLLNTVILGESSIAELP-SDLFWN 59
+ +Q+I ++ S ++L + + +G +++ P
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
+ + + +L KL L L N++ +P N +++ L+ +
Sbjct: 329 MKKLGMLEC-LYNQLEGKLPAFGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386
Query: 120 NQLENI 125
N+L+ I
Sbjct: 387 NKLKYI 392
Score = 38.5 bits (90), Expect = 2e-04
Identities = 10/100 (10%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 35 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 94
+ + + N ++T++ + LT LP+ L ++ + +
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVA 281
Query: 95 RNKLKYLPENL--------FESLKELYTLNLKNNQLENIT 126
N+ + +++ + + N L+
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321
Score = 37.7 bits (88), Expect = 4e-04
Identities = 14/120 (11%), Positives = 40/120 (33%), Gaps = 6/120 (5%)
Query: 7 FAEMKYLQVIKISYHKDS---LKELPSGLFANLPLLNTVILGESSIAELPSDL-FWNSTN 62
++ L+V+ + H + P G+ AN+ + + ++
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ + + S+ R K ++ N + ++ + + L +L + N+
Sbjct: 161 LIKDCINSDPQQKSIKK-SSRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPF 218
Score = 30.4 bits (69), Expect = 0.13
Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 5/107 (4%)
Query: 11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 70
+ Q +++ Y K + P F++L I + + + T I
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDC--INSDPQQKSIKKSSR-ITLKDTQIGQ-L 191
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL 117
+T + + R KL + + + +
Sbjct: 192 SNNITFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237
Score = 28.1 bits (63), Expect = 0.93
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 59 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNL 117
++ +T + L G +P + + +L L L + K + + +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137
Query: 118 KNNQLENIT 126
K +
Sbjct: 138 KQKMRMHYQ 146
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 51.8 bits (124), Expect = 5e-09
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 48 SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE 107
++ +P DL + L+ ++ L +L L L N+++ L ++F
Sbjct: 42 NLTHVPKDL---PPRTKALSLS-QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97
Query: 108 SLKELYTLNLKNNQLENI 125
++L L++ +N+L+NI
Sbjct: 98 FNQDLEYLDVSHNRLQNI 115
Score = 45.2 bits (107), Expect = 9e-07
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 20 YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 79
Y +L +P L L+ L ++SI+EL + + + L H ++ SL
Sbjct: 38 YSNRNLTHVPKDLPPRTKALS---LSQNSISELRMPDISFLSELRVLRL-SHNRIRSLDF 93
Query: 80 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+F + L L++ N+L+ + + L L+L N + +
Sbjct: 94 HVFLFNQDLEYLDVSHNRLQNIS---CCPMASLRHLDLSFNDFDVLPV 138
Score = 44.5 bits (105), Expect = 2e-06
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 21 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
L++ +N +L S + + ++ T + T T
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT-QNVFTDSVFQ 371
Query: 81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
K+L L LQRN LK + K + +L + L ++
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFF-KVALMTKNMSSLETLDVSLNSLN 416
Score = 43.3 bits (102), Expect = 5e-06
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST-LFR 83
++ L +F L + + + + + ++ ++ L LP F
Sbjct: 88 IRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM---ASLRHLDL-SFNDFDVLPVCKEFG 143
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELY-TLNLKNNQLENI 125
+ KL L L K + L L L+L + ++
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186
Score = 42.2 bits (99), Expect = 1e-05
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 1/117 (0%)
Query: 9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 68
++YL + ++ + +E + L L + L+ + +L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336
Query: 69 TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ + L +N +LK L TL L+ N L+N
Sbjct: 337 SISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392
Score = 38.3 bits (89), Expect = 3e-04
Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 25/150 (16%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP--SDLFW 58
+ + + + + L L T+IL + + + +
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNV--FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400
Query: 59 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL-----KYLPENL-------- 105
N +++ + ++ + + + ++ L L N L + LP +
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460
Query: 106 --------FESLKELYTLNLKNNQLENITR 127
L+ L LN+ +NQL+++
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPD 490
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 51.0 bits (122), Expect = 9e-09
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 32 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91
+ N + +SS+ + + L ++ N+ + L L+ + + KL L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDL-SGNPLSQISAADLAPFTKLELL 63
Query: 92 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L N L + ESL L TL+L NN ++ +
Sbjct: 64 NLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL 95
Score = 47.5 bits (113), Expect = 1e-07
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 54 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 113
++ N +T L ++L + + +L+L N L + +L
Sbjct: 3 HEIKQNGNRYKIEKVT-DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 114 TLNLKNNQLENI 125
LNL +N L
Sbjct: 62 LLNLSSNVLYET 73
Score = 46.0 bits (109), Expect = 5e-07
Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-STLF 82
++ + + L + I L + + + L ++ ++ + L
Sbjct: 110 NISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDL-KLNEIDTVNFAELA 165
Query: 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L L LQ N + + + +L TL+L +N+L +
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM 206
Score = 44.8 bits (106), Expect = 2e-06
Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 23/141 (16%)
Query: 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 63
++ ++ K++ LK+ + L + + + L + ++++ + T +
Sbjct: 3 HEIKQNGNRYKIEKVTDSS--LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 64 TNIVLTGHKKLTSLPS-----------------TLFRDCKKLVKLELQRNKLKYLPENLF 106
+ L L + L N + + +
Sbjct: 61 ELLNL-SSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119
Query: 107 ESLKELYTLNLKNNQLENITR 127
+ K +Y L NN++ +
Sbjct: 120 QGKKNIY---LANNKITMLRD 137
Score = 44.1 bits (104), Expect = 3e-06
Identities = 16/142 (11%), Positives = 46/142 (32%), Gaps = 25/142 (17%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
L ++ + +S + L ++ + A L + L + + E + +
Sbjct: 26 LASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81
Query: 63 ITNIVLTG------------------HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 104
+ + L + ++ + + + + L NK+ L +
Sbjct: 82 LRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDL 138
Query: 105 LFESLKELYTLNLKNNQLENIT 126
+ L+LK N+++ +
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVN 160
Score = 43.7 bits (103), Expect = 3e-06
Identities = 18/126 (14%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLNTVILGESSIAELPSDLFWNS 60
+Q + + ++ + + L A+ L + L + I ++ + +
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-- 190
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ + L KL + F+ + + L+ NKL + + + L +L+ N
Sbjct: 191 AKLKTLDL-SSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGN 247
Query: 121 QLENIT 126
T
Sbjct: 248 GFHCGT 253
Score = 42.5 bits (100), Expect = 7e-06
Identities = 16/128 (12%), Positives = 44/128 (34%), Gaps = 7/128 (5%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF---WN 59
+D F++ + +Q + K ++K+L + G +LP+
Sbjct: 254 LRDFFSKNQRVQTV----AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
+ +L+G T + + +++ + + + + + + + TL K
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
Query: 120 NQLENITR 127
L+
Sbjct: 370 KALDEQVS 377
Score = 34.1 bits (78), Expect = 0.008
Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 7/129 (5%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD----LFW 58
E + + ++LP+ L L S ++
Sbjct: 276 TGQNEEECTVPTLGHYGAY--CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333
Query: 59 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 118
N I ++ ++ + + + LE ++ L N + EL +
Sbjct: 334 NQARQREIDAL-KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392
Query: 119 NNQLENITR 127
+
Sbjct: 393 AVGQIELQH 401
Score = 31.4 bits (71), Expect = 0.060
Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
+L A L+ + + Y+ + ++ + L T+ L + +A + + F ++
Sbjct: 161 FAELAASSDTLEHLNLQYNF--IYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAG 215
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL-PENLFESLKELYTLNLKNNQ 121
+T I L + KL + R + L +L+ N + F + + T+ + +
Sbjct: 216 VTWISL-RNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 51.0 bits (122), Expect = 1e-08
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 40 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 99
V ++ + +P DL S T + ++ ++ L ++ KL L + N+++
Sbjct: 3 FLVDRSKNGLIHVPKDL---SQKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQ 58
Query: 100 YLPENLFESLKELYTLNLKNNQLENI 125
YL ++F+ +EL L+L +N+L I
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKLVKI 84
Score = 50.2 bits (120), Expect = 2e-08
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
PKDL + L + ++ + EL + +L L +I+ + I L +F +
Sbjct: 16 PKDLSQKTTILNI-----SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQ 121
+ + L+ H KL + L L+L N LP F ++ +L L L
Sbjct: 71 LEYLDLS-HNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126
Query: 122 LENI 125
LE
Sbjct: 127 LEKS 130
Score = 49.1 bits (117), Expect = 5e-08
Identities = 15/128 (11%), Positives = 45/128 (35%), Gaps = 6/128 (4%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
++ + + + + + + + + + + + + +
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSG--TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347
Query: 61 TNITNIVLTGHKKLTSLPST--LFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNL 117
T + ++L +L L + K L +L++ +N + Y + K L +LN+
Sbjct: 348 TELETLIL-QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 118 KNNQLENI 125
+N L +
Sbjct: 407 SSNILTDT 414
Score = 46.8 bits (111), Expect = 3e-07
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 1/118 (0%)
Query: 10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
+ Y + + +L L+ + S ++ +N+ T
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
+ + L+ N L L EL TL L+ NQL+ +++
Sbjct: 309 VSG-TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365
Score = 46.4 bits (110), Expect = 4e-07
Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 65
+ +MK LQ + IS + S + G + L ++ + + + + + +
Sbjct: 369 MTTQMKSLQQLDISQNSVS-YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLD 427
Query: 66 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ K+ S+P + + + L +L + N+LK +P+ +F+ L L + L N
Sbjct: 428 L---HSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 45.2 bits (107), Expect = 8e-07
Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L +P L +LN + ++ I+EL + + + + +++ H ++ L ++F+
Sbjct: 11 GLIHVPKDLSQKTTILN---ISQNYISELWTSDILSLSKLRILII-SHNRIQYLDISVFK 66
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
++L L+L NKL + L L+L N + +
Sbjct: 67 FNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPI 107
Score = 42.5 bits (100), Expect = 1e-05
Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 27/151 (17%)
Query: 1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP--SDLFW 58
M +++ + S + L + +L L T+IL + + EL +++
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNL--LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371
Query: 59 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL----------------------ELQRN 96
++ + ++ + K L+ L +L N
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431
Query: 97 KLKYLPENLFESLKELYTLNLKNNQLENITR 127
K+K +P+ + L+ L LN+ +NQL+++
Sbjct: 432 KIKSIPKQVV-KLEALQELNVASNQLKSVPD 461
Score = 39.1 bits (91), Expect = 1e-04
Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 7/117 (5%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
+ L+++ IS+++ ++ L +F L + L + + ++ N+ ++
Sbjct: 41 ILSLSKLRILIISHNR--IQYLDISVFKFNQELEYLDLSHNKLVKISCHPT---VNLKHL 95
Query: 67 VLTGHKKLTSLPST-LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
L +LP F + +L L L L+ L L +
Sbjct: 96 DL-SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151
Score = 25.2 bits (55), Expect = 7.0
Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 7/104 (6%)
Query: 25 LKELP-SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
LP F N+ L + L + + + + +++ G +
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
D + + + F + ++ + N +L NI
Sbjct: 162 D------FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 45.5 bits (109), Expect = 3e-07
Identities = 14/101 (13%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
L L + LP + + + L + + + + +++LT L + +
Sbjct: 62 LTRLKAA-VGELPEKSKLQEIYQELTRLKAAVG-ELPEKSKLQE-IYQELTELKAAVGE- 117
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ KL+ +L L + L + +L ++
Sbjct: 118 LPEKSKLQEIYQELTQLKAAV-GELPDQSKQQQIYQELTDL 157
Score = 40.5 bits (96), Expect = 2e-05
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 34 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 93
LP + + + L + + + + +++LT L + + + KL+
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAV-GELPEKSKLQE-IYQELTRLKAAVGE-LPEKSKLQE 57
Query: 94 QRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+L L L E L +L +
Sbjct: 58 IYQELTRLKAA-VGELPEKSKLQEIYQELTRL 88
Score = 33.2 bits (77), Expect = 0.010
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
L L + + LP + + + EL + + + + +++LT L + + +
Sbjct: 85 LTRLKAAVG-ELPEKSKLQEIYQELTELKAAV-GELPEKSKLQE-IYQELTQLKAAV-GE 140
Query: 85 CKKLVKLELQRNKLKYLPENL 105
K + +L L
Sbjct: 141 LPDQSKQQQIYQELTDLKTAF 161
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 44.9 bits (106), Expect = 1e-06
Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 22/115 (19%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L LP L A++ L + ++++ LP+ + + + +LTSLP
Sbjct: 51 GLTTLPDCLPAHITTLV---IPDNNLTSLPALP----PELRTLEV-SGNQLTSLPVLP-P 101
Query: 84 DCKKLVKLELQRNKLKYLPENLFE-------------SLKELYTLNLKNNQLENI 125
+L L LP L + L L++ +NQL ++
Sbjct: 102 GLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL 156
Score = 42.6 bits (100), Expect = 1e-05
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 25 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
L LP A L +I+ + + LP + + +++ +LTSLP
Sbjct: 213 LTSLP----ALPSGLKELIVSGNRLTSLPVLP----SELKELMV-SGNRLTSLPMLP--- 260
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L+ L + RN+L LPE+L L T+NL+ N L T
Sbjct: 261 -SGLLSLSVYRNQLTRLPESLI-HLSSETTVNLEGNPLSERT 300
Score = 38.3 bits (89), Expect = 2e-04
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
G LT+LP L + L + N L LP EL TL + NQL ++
Sbjct: 48 GESGLTTLPDCLP---AHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLTSL 96
Score = 38.3 bits (89), Expect = 2e-04
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 23/115 (20%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPS-----DLFWNS--------TNITNIVLTG 70
L LP L L L+ + + LPS +F N + + +
Sbjct: 92 QLTSLPV-LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSV-S 149
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+L SLP+ +L KL N+L LP L L++ +NQL ++
Sbjct: 150 DNQLASLPALP----SELCKLWAYNNQLTSLPM----LPSGLQELSVSDNQLASL 196
Score = 34.1 bits (78), Expect = 0.007
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L LP L L L+ + ++ +A LP+ + + + + +LTSLP
Sbjct: 132 QLTSLPV-LPPGLQELS---VSDNQLASLPALP----SELCKLWA-YNNQLTSLPMLP-- 180
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
L +L + N+L LP L L +L+ N + L
Sbjct: 181 --SGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSL 216
Score = 34.1 bits (78), Expect = 0.007
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L + + L LP+ L + L + +N L ++
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLPAHITTLV---IPDNNLTSL 76
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 43.4 bits (102), Expect = 4e-06
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKKLTSLPSTLF 82
++ + F+ L + E S L + + L L+SLP L
Sbjct: 21 TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL-NRLNLSSLPDNLP 79
Query: 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
++ LE+ +N L LP E L L+ +N+L +
Sbjct: 80 ---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL 115
Score = 42.7 bits (100), Expect = 7e-06
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
+L LP L + +L + ++++ LP ++ + ++ L++LP
Sbjct: 70 NLSSLPDNLPPQITVLE---ITQNALISLPELP----ASLEYLDACDNR-LSTLPELP-- 119
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L L++ N+L LP E L +N NNQL +
Sbjct: 120 --ASLKHLDVDNNQLTMLP----ELPALLEYINADNNQLTML 155
Score = 37.3 bits (86), Expect = 6e-04
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P +L ++ L++ +++L LP L A+L L+ ++ ++ LP
Sbjct: 74 LPDNLPPQITVLEI-----TQNALISLPE-LPASLEYLD---ACDNRLSTLPELP----A 120
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
++ ++ + ++ LT LP L + N+L LP E L L+++NNQ
Sbjct: 121 SLKHLDVDNNQ-LTMLPELP----ALLEYINADNNQLTMLP----ELPTSLEVLSVRNNQ 171
Query: 122 LENI 125
L +
Sbjct: 172 LTFL 175
Score = 36.9 bits (85), Expect = 7e-04
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 73 KLTSLPSTLFRDC---KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L SLP+ R+ + + + N++ ++PEN+ SL T+ L++N L +
Sbjct: 191 LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRI 246
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 42.9 bits (102), Expect = 7e-06
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
ANL L + +G + I+++ + + T + + + G +++ + + +L L
Sbjct: 239 LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNV-GSNQISDISV--LNNLSQLNSLF 293
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L N+L + L L TL L N + +I
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327
Score = 38.7 bits (91), Expect = 2e-04
Identities = 17/117 (14%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
A + L ++I ++ + ++ + +L L + +G + I+++ N + + ++
Sbjct: 239 LANLSQLTWLEIGTNQ--ISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSL 292
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
L ++ L + + L L L +N + + SL ++ + + N ++
Sbjct: 293 FLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
Score = 36.8 bits (86), Expect = 8e-04
Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 63
+F + + I+ K S+ ++ + L + +++ +A + TN+
Sbjct: 13 NQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNL 68
Query: 64 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
+ L G++ +T + + KL L + NK+ + ++L L L L + +
Sbjct: 69 EYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNIS 123
Query: 124 NI 125
+I
Sbjct: 124 DI 125
Score = 35.2 bits (82), Expect = 0.003
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 34 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 93
A+L +L ++S+ ++ + +IT +V+ +K+ S+ L L L
Sbjct: 19 ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVA-GEKVASIQG--IEYLTNLEYLNL 73
Query: 94 QRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
N++ + +L +L L + N++ +I+
Sbjct: 74 NGNQITDISP--LSNLVKLTNLYIGTNKITDIS 104
Score = 32.1 bits (74), Expect = 0.033
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
+ L+ + ++ + ++ ANL + ++ LG + S L N T + +
Sbjct: 106 LQNLTNLRELYLNEDN--ISDISP--LANLTKMYSLNLGANHNLSDLSPLS-NMTGLNYL 160
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
+ K+ + + L L L N+++ + SL L+ NQ+ +IT
Sbjct: 161 TV-TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-05
Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 24/129 (18%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI----AELPSDLFW 58
P +L K+L + + + L L L + I A+L +
Sbjct: 57 PAELVG--KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 59 NSTNITNIV--------LTGHKKLTSLPSTLFRDCKK-LVKLEL----QRNKLKYLPENL 105
++ + S LFR + +L Q N Y E
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-- 172
Query: 106 FESLKELYT 114
L++LY
Sbjct: 173 ---LRDLYQ 178
Score = 40.4 bits (94), Expect = 5e-05
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 53/119 (44%)
Query: 19 SYHKDSLKE---LPSGLFANLPLLNTVILG------ESSI----AELPSD------LFWN 59
S +DSL+ +PS P+L I + + + LP+ L N
Sbjct: 322 SILEDSLENNEGVPS------PML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLV-N 372
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL------------QRNKLK----YLP 102
N+V++G P +L+ L K + +R KLK +LP
Sbjct: 373 GAK--NLVVSGP------PQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNRFLP 422
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 40.9 bits (96), Expect = 1e-05
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 72 KKLT--SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
+ LT SLP+ D +L L N L LP L ++L L T +L N
Sbjct: 18 RGLTWASLPTAFPVD---TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 41.1 bits (97), Expect = 3e-05
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 24 SLKELPSGL-FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
+LK L A P + L + + P F +++ ++ + L LP T+
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTI-DAAGLMELPDTMQ 124
Query: 83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL-KNNQLENI 125
+ L L L RN L+ LP ++ SL L L++ +L +
Sbjct: 125 Q-FAGLETLTLARNPLRALPASI-ASLNRLRELSIRACPELTEL 166
Score = 38.8 bits (91), Expect = 2e-04
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL-GESSIAELPSDLFWNSTNITN 65
A ++ L+ +KI L L + +LP L + L G +++ P +
Sbjct: 202 IANLQNLKSLKIRNSP--LSALGPAI-HHLPKLEELDLRGCTALRNYPPIFG-GRAPLKR 257
Query: 66 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRN-KLKYLPENLFESLKELYTLNLKNNQLEN 124
++L L +LP + R +L KL+L+ L LP + L + + +
Sbjct: 258 LILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQAQ 315
Query: 125 ITR 127
+ +
Sbjct: 316 LDQ 318
Score = 36.8 bits (86), Expect = 6e-04
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 8/103 (7%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
+L+ L + A ++ N I + L + L
Sbjct: 24 ALRPYHDVL-SQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKATADLLED 77
Query: 84 DC-KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
V LEL+ L P+ F L L + + L +
Sbjct: 78 ATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMEL 119
Score = 34.9 bits (81), Expect = 0.003
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 24 SLKELPSGLFANLPLLNTVIL-GESSIAELPSDLFWNSTNITNIVLT-------GHKKLT 75
L+ LP+ + A+L L + + + ELP L + + L +
Sbjct: 138 PLRALPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196
Query: 76 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL-KNNQLENI 125
SLP+++ + L L+++ + L L + L +L L+L L N
Sbjct: 197 SLPASIAN-LQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCTALRNY 245
Score = 31.8 bits (73), Expect = 0.037
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 24 SLKELPSGLFANLPLLNTVIL-GESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
+L+ P F L +IL S++ LP D+ T + + L G L+ LPS +
Sbjct: 241 ALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLI- 297
Query: 83 RDCKKLVKLELQRNKLKYLPENLFESL 109
+ + + L ++ +
Sbjct: 298 AQLPANCIILVPPHLQAQLDQHRPVAR 324
Score = 28.8 bits (65), Expect = 0.50
Identities = 11/87 (12%), Positives = 20/87 (22%), Gaps = 20/87 (22%)
Query: 59 NSTNITNIVLTGHKKLTSLPSTL-------------------FRDCKKLVKLELQRNKLK 99
+S+ N+ G L L + LK
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69
Query: 100 YLPENLFE-SLKELYTLNLKNNQLENI 125
+ L + + L L++ L
Sbjct: 70 ATADLLEDATQPGRVALELRSVPLPQF 96
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 39.3 bits (92), Expect = 9e-05
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 23 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
+L++L +F L L ++ I +LP+ F I ++L L + S F
Sbjct: 166 STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLL--PVTLKEIGSQAF 222
Query: 83 RDCKKLVKLELQRNKLKYLPENLFE--SLKEL 112
+L +E+ + + + F + +
Sbjct: 223 LKTSQLKTIEIP-ENVSTIGQEAFRESGITTV 253
Score = 37.0 bits (86), Expect = 6e-04
Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
F + L+ I+I +++ + F + TV L + + + S F+ + +
Sbjct: 222 FLKTSQLKTIEIP---ENVSTIGQEAFRESGI-TTVKLP-NGVTNIASRAFYYCPELAEV 276
Query: 67 VL----TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ C KL + E+ ++ L + L +++ L + N
Sbjct: 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 39.1 bits (92), Expect = 1e-04
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 27 ELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRD 84
E+P L L + L + +P + + + ++ L + LP
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLAL-SSNNFSGELPMDTLLK 341
Query: 85 CKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 123
+ L L+L N+ LPE+L L TL+L +N
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Score = 36.4 bits (85), Expect = 0.001
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 34 ANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDCKKLVKL 91
L L + L E+ E+P L +T + L ++P C L L
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL-SGNHFYGAVPPFFGS-CSLLESL 323
Query: 92 ELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 123
L N LP + ++ L L+L N+
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Score = 34.9 bits (81), Expect = 0.004
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 27 ELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRD 84
+P + L + + + ++ + + T + + + + +P
Sbjct: 215 GIPF--LGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNI-SSNQFVGPIPPLP--- 267
Query: 85 CKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 123
K L L L NK +P+ L + L L+L N
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Score = 34.1 bits (79), Expect = 0.006
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLK-ELPSGLFANLPLLNTVILGESSIA-ELPSDLFWN 59
P D +M+ L+V+ +S++ ELP L L T+ L ++ + + +L N
Sbjct: 334 LPMDTLLKMRGLKVLDLSFN--EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 60 STNITNIVLTGHKKLT-SLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNL 117
N + + T +P TL +C +LV L L N L +P +L SL +L L L
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKL 449
Query: 118 KNNQLE 123
N LE
Sbjct: 450 WLNMLE 455
Score = 32.6 bits (75), Expect = 0.028
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 27 ELPSGLFAN-LPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFR 83
+ L N L + L + ++P L N + + ++ L L+ ++PS+L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHL-SFNYLSGTIPSSLGS 440
Query: 84 DCKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 123
KL L+L N L+ +P+ L +K L TL L N L
Sbjct: 441 -LSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLT 479
Score = 31.0 bits (71), Expect = 0.093
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 19/82 (23%)
Query: 47 SSIAELPS----DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-YL 101
SS+ L L+ N L G +P L K L L L N L +
Sbjct: 436 SSLGSLSKLRDLKLWLNM-------LEG-----EIPQELM-YVKTLETLILDFNDLTGEI 482
Query: 102 PENLFESLKELYTLNLKNNQLE 123
P L + L ++L NN+L
Sbjct: 483 PSGLS-NCTNLNWISLSNNRLT 503
Score = 28.3 bits (64), Expect = 0.67
Identities = 12/96 (12%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 33 FANLPLLNTVILGESSIA-ELPSDL-FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90
F L ++ L +S++ + + + + + + ++ + + L
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 91 LELQRNKL-KYLPENL--FESLKELYTLNLKNNQLE 123
L+L N + + EL L + N++
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191
Score = 27.6 bits (62), Expect = 1.1
Identities = 7/97 (7%), Positives = 22/97 (22%), Gaps = 4/97 (4%)
Query: 27 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 86
+P+ +F + + + + + + S
Sbjct: 553 TIPAAMFKQSGKIAANFIAGK----RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
+ F++ + L++ N L
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Score = 27.2 bits (61), Expect = 1.7
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 57 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTL 115
+ +T T F + ++ L++ N L Y+P+ + S+ L+ L
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFIL 661
Query: 116 NLKNNQL 122
NL +N +
Sbjct: 662 NLGHNDI 668
Score = 26.8 bits (60), Expect = 2.3
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 27 ELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLTSLPSTL-FRD 84
+ S L +L L ++ L S I + F S ++T++ L+ + + +
Sbjct: 68 AVSSSLL-SLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGS 124
Query: 85 CKKLVKLELQRNKLKY-LPENLFESLKELYTLNLKNNQLE 123
C L L + N L + + L L L+L N +
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164
Score = 25.6 bits (57), Expect = 5.8
Identities = 14/120 (11%), Positives = 36/120 (30%), Gaps = 7/120 (5%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITN 65
F L + +S + S + L + + +++ ++
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 66 IVLTGHKKLTSLPSTLFRD--CKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQL 122
+ L+ + + C +L L + NK+ + L L++ +N
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNF 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 39.0 bits (90), Expect = 2e-04
Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 9/127 (7%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN----- 59
+ + L +I + D L L L + + + +L S
Sbjct: 378 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK 437
Query: 60 -STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 118
++ HK LT L + L+L N+L+ LP L +L+ L L
Sbjct: 438 MEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQAS 494
Query: 119 NNQLENI 125
+N LEN+
Sbjct: 495 DNALENV 501
Score = 36.7 bits (84), Expect = 9e-04
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 61 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+T++ L H +L +LP L + L L+ N L+ + +L L L L NN
Sbjct: 463 LLVTHLDL-SHNRLRALPPAL-AALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN 518
Query: 121 QLENIT 126
+L+
Sbjct: 519 RLQQSA 524
Score = 34.0 bits (77), Expect = 0.009
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 35 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 94
L L+ + L + + LP L + + L ++ + +L +L L
Sbjct: 461 QLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQA-SDNALENVDG--VANLPRLQELLLC 516
Query: 95 RNKLKYLPENL-FESLKELYTLNLKNNQLENI 125
N+L+ S L LNL+ N L
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 38.6 bits (90), Expect = 2e-04
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 63
K + M L + IS K + +P FA L + L ++ + +F N +
Sbjct: 219 KLIRDYMPNLVSLDIS--KTNATTIPDFTFAQKKYLLKIKLP-HNLKTIGQRVFSNCGRL 275
Query: 64 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE---SLKELY 113
+ +T++ F C L + +K+ L + LF K +Y
Sbjct: 276 AGTL-ELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327
Score = 35.9 bits (83), Expect = 0.001
Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 30 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89
+ +P L ++ + +++ +P F + I L L ++ +F +C +L
Sbjct: 219 KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL--PHNLKTIGQRVFSNCGRLA 276
Query: 90 K-LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
LEL + + F L + +++ +
Sbjct: 277 GTLELP-ASVTAIEFGAFMGCDNLRYVLATGDKITTL 312
Score = 35.9 bits (83), Expect = 0.001
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 7/102 (6%)
Query: 23 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
F L T I ++ +L ++ +I L + F
Sbjct: 162 RFKNRWEHFAFIEGEPLETTIQ-VGAMGKLEDEIMKAGLQPRDINFL--TIEGKLDNADF 218
Query: 83 R----DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ LV L++ + +P+ F K L + L +N
Sbjct: 219 KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260
Score = 35.5 bits (82), Expect = 0.002
Identities = 13/124 (10%), Positives = 41/124 (33%), Gaps = 4/124 (3%)
Query: 4 KDLFAEMKYLQVIKISYHK--DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
+ L E L+V+ IS + + + + + + + + + +
Sbjct: 42 RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ ++L +K+ ++ F+ C L ++++ L + L ++
Sbjct: 102 TLEKVIL--SEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD 159
Query: 122 LENI 125
Sbjct: 160 AYRF 163
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 38.4 bits (90), Expect = 2e-04
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L++LP N L + + +S+ +LP ++ I G+ +L LP +
Sbjct: 142 QLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAA-GNNQLEELPE--LQ 192
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ L + N LK LP + L ++ NN LE +
Sbjct: 193 NLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNNILEEL 230
Score = 35.7 bits (83), Expect = 0.002
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
+L++I + + LK+LP P L + G + + ELP N +T I
Sbjct: 149 LQNSSFLKIIDVDNNS--LKKLPDLP----PSLEFIAAGNNQLEELPE--LQNLPFLTAI 200
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ L LP L + N L+ LPE ++L L T+ NN L+ +
Sbjct: 201 YA-DNNSLKKLPDLPL----SLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTL 252
Score = 35.4 bits (82), Expect = 0.003
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 63
K L L+ I ++ L+ELP NLP L + +S+ +LP ++
Sbjct: 166 KKLPDLPPSLEFIAAGNNQ--LEELPE--LQNLPFLTAIYADNNSLKKLPDLP----LSL 217
Query: 64 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
+IV G+ L LP ++ L + N LK LP + L LN+++N L
Sbjct: 218 ESIVA-GNNILEELPE--LQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLT 270
Query: 124 NIT 126
++
Sbjct: 271 DLP 273
Score = 33.4 bits (77), Expect = 0.011
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 24/117 (20%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
++ L L L L ++ LP ++ ++V LT LP
Sbjct: 61 AVSRLRDCLDRQAHELE---LNNLGLSSLPELP----PHLESLVA-SCNSLTELPELPQS 112
Query: 84 DCKKLVKLELQRNKLKYLPENL---------------FESLKELYTLNLKNNQLENI 125
K L+ L LP L ++ L +++ NN L+ +
Sbjct: 113 -LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 168
Score = 31.5 bits (72), Expect = 0.060
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 30 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89
SGL P L + + I L ++ + ++ + KL LP+ +L
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCDLP----PSLEELNVS-NNKLIELPALP----PRLE 340
Query: 90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+L N L +P E + L L+++ N L
Sbjct: 341 RLIASFNHLAEVP----ELPQNLKQLHVEYNPLREF 372
Score = 30.3 bits (69), Expect = 0.14
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
L P + L + ++ E E+ +L +++ +
Sbjct: 407 PLREFPDIPE----SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454
Score = 29.6 bits (67), Expect = 0.27
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 24/109 (22%)
Query: 32 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91
L P L + + + + ELP+ + ++ L +P + L +L
Sbjct: 312 LCDLPPSLEELNVSNNKLIELPALP----PRLERLIA-SFNHLAEVPELP----QNLKQL 362
Query: 92 ELQRNKLKYLPE---------------NLFESLKELYTLNLKNNQLENI 125
++ N L+ P+ + E + L L+++ N L
Sbjct: 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411
Score = 26.9 bits (60), Expect = 2.1
Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 68 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L + L +P + L +L ++ N L+ P+ + + L + + ++ +
Sbjct: 382 LRMNSHLAEVPEL----PQNLKQLHVETNPLREFPD----IPESVEDLRMNSERVVDP 431
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 38.4 bits (90), Expect = 2e-04
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
L L+ + L + + ++ + + TN+T++ L + ++++L KL +L+
Sbjct: 217 LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDL-ANNQISNLAP--LSGLTKLTELK 271
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L N++ + L L L L NQLE+I+
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQLEDIS 303
Score = 36.5 bits (85), Expect = 0.001
Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
+ + L +K+ ++ + + A L L + L E+ + ++ N N+T +
Sbjct: 261 LSGLTKLTELKLGANQ--ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L ++ + KL +L NK+ + +L + L+ +NQ+ ++T
Sbjct: 315 TL-YFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLT 369
Score = 34.9 bits (81), Expect = 0.003
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
NL LN + L ++I+++ + T++ + G++ P + L +L+
Sbjct: 130 LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP---LANLTTLERLD 183
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
+ NK+ + L L +L NNQ+ +IT
Sbjct: 184 ISSNKVSDISV--LAKLTNLESLIATNNQISDIT 215
Score = 34.9 bits (81), Expect = 0.004
Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
L +LG++++ + S + +T + + S+ L ++
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQAD-RLGIKSIDG--VEYLNNLTQIN 74
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
N+L + ++L +L + + NNQ+ +IT
Sbjct: 75 FSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106
Score = 34.6 bits (80), Expect = 0.005
Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 63
+F + + +K K ++ + S +L + T+ I + N+
Sbjct: 15 NQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNL 70
Query: 64 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
T I + ++ LT + ++ KLV + + N++ + +L L L L NNQ+
Sbjct: 71 TQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125
Query: 124 NIT 126
+I
Sbjct: 126 DID 128
Score = 31.9 bits (73), Expect = 0.046
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
+NL L + L ++I+++ + T + + + K++ + S + + L
Sbjct: 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF-YNNKVSDVSS--LANLTNINWLS 359
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
N++ L +L + L L + N
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390
Score = 31.5 bits (72), Expect = 0.052
Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 12/120 (10%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
+ L I ++ ++ + ++ ANL L + L + I ++ N TN+ +
Sbjct: 86 LKNLTKLVDILMNNNQ--IADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L ++ + + L +L P +L L L++ +N++ +I+
Sbjct: 140 EL-SSNTISDISA--LSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDIS 193
Score = 31.1 bits (71), Expect = 0.076
Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
L L + + + ++ N T + +I++ + ++ + + L L
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM-NNNQIADITP--LANLTNLTGLT 118
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L N++ + ++L L L L +N + +I
Sbjct: 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI 149
Score = 29.5 bits (67), Expect = 0.25
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
++L L + + ++++ S N TNI + GH +++ L + ++ +L
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSA-GHNQISDLTP--LANLTRITQLG 381
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQL 122
L P N ++ T+ L
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 37.3 bits (87), Expect = 4e-04
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
F ++L L + N++ + E L ++L +L L L NN L +
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103
Score = 31.6 bits (72), Expect = 0.042
Identities = 8/44 (18%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ + + +L+L+ K+ + ENL +L + ++ +N++ +
Sbjct: 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL 57
Score = 28.9 bits (65), Expect = 0.36
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 31 GLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 90
L A L + + ++ I +L D F + +++ + ++ + L + L +
Sbjct: 36 NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLV-NNNRICRIGEGLDQALPDLTE 92
Query: 91 LELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENI 125
L L N L L + + SLK L L + N + N
Sbjct: 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 36.4 bits (84), Expect = 0.001
Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 10/130 (7%)
Query: 2 FPKDLFAEMKYLQVIKISY-----HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL 56
F + L + +S + + L F L +L G + + + S L
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223
Query: 57 FWNSTNITNIVLTGHKKLTSLP-STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 115
+ + L H L + +L L L LK +P+ L L L
Sbjct: 224 AAARVQLQGLDL-SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS---VL 279
Query: 116 NLKNNQLENI 125
+L N+L+
Sbjct: 280 DLSYNRLDRN 289
Score = 35.3 bits (81), Expect = 0.002
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 24 SLKELPSGLFANLPLLNTV------ILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 77
P L+T+ LGE + L + + + + G + + +
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 78 PSTLFRDCKKLVKLELQRNKLKYLPENL-FESLKELYTLNLKNNQLENITR 127
S L +L L+L N L+ + +L +LNL L+ + +
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270
Score = 34.1 bits (78), Expect = 0.008
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 21 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL-FWNSTNITNIVLTGHKKLTSLPS 79
++ + S L A L + L +S+ + + + ++ L L +P
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL-SFTGLKQVPK 270
Query: 80 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
L KL L+L N+L P + L ++ L+LK N +
Sbjct: 271 GLPA---KLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNPFLD 310
Score = 28.3 bits (63), Expect = 0.63
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
N+ N+ L L L + + L TL+L +N
Sbjct: 127 NLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184
Query: 122 L 122
Sbjct: 185 E 185
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 36.6 bits (84), Expect = 0.001
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
+L L ++ L + I+++ + + ++ L G+ K+T + KL L
Sbjct: 105 LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL-GNNKITDITV--LSRLTKLDTLS 159
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L+ N++ + L +L L L N + ++
Sbjct: 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 191
Score = 35.1 bits (80), Expect = 0.003
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
NL L + L E+ I +L S + + ++ L H ++ + +L L
Sbjct: 83 LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSL-EHNGISDING--LVHLPQLESLY 137
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L NK+ + L +L TL+L++NQ+ +I
Sbjct: 138 LGNNKITDITV--LSRLTKLDTLSLEDNQISDIV 169
Score = 27.8 bits (61), Expect = 1.0
Identities = 4/43 (9%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
+ +K L++ + L + + N+ ++++
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ 59
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 35.8 bits (83), Expect = 0.001
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
KL KLEL N++ E L E L LNL N+++++
Sbjct: 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103
Score = 25.4 bits (56), Expect = 4.5
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 83 RDCKKLVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENIT 126
R + +L L ++ E L + +EL L+ N L +I
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA 58
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 34.7 bits (80), Expect = 0.003
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
KL KLEL N++ + L E L L LNL N+L++I
Sbjct: 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110
Score = 28.2 bits (63), Expect = 0.64
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 73 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENI 125
++ L L L L NKLK + + L+ L +L+L N ++ N+
Sbjct: 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 34.7 bits (80), Expect = 0.004
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
NL + + L + + + + +I + L ++T + L L
Sbjct: 81 LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDL-TSTQITDVTP--LAGLSNLQVLY 135
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L N++ + L L L++ N Q+ ++T
Sbjct: 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT 167
Score = 33.9 bits (78), Expect = 0.007
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
A L L + L + I + TN+ + + G+ +++ L + KL L+
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI-GNAQVSDLTP--LANLSKLTTLK 179
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
NK+ + SL L ++LKNNQ+ +++
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211
Score = 31.6 bits (72), Expect = 0.055
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 11/120 (9%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
A++ + + + + L L + L ++ I +L N T IT +
Sbjct: 37 QADLDGITTLSAFGTG--VTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITEL 90
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L L ++ + + + L+L ++ + L L L L NQ+ NI+
Sbjct: 91 EL-SGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS 145
Score = 31.2 bits (71), Expect = 0.070
Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
A L L + +G + +++L N + +T + K++ + L+++
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD-DNKISDISP--LASLPNLIEVH 201
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L+ N++ + + L+ + L N + N
Sbjct: 202 LKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233
Score = 25.4 bits (56), Expect = 5.7
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
ANL L T+ ++ I+++ + N+ + L + +++ + + L +
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLK-NNQISDVSP--LANTSNLFIVT 223
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQL 122
L + P +L + +
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 33.8 bits (78), Expect = 0.007
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
+ L L + + + T++T + + H T K+ ++
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI-SHSAHDDSILTKINTLPKVNSID 142
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L N L ++L EL +LN++ + + +
Sbjct: 143 LSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYR 175
Score = 33.0 bits (76), Expect = 0.015
Identities = 15/119 (12%), Positives = 43/119 (36%), Gaps = 6/119 (5%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
+ + L+ ++I + ++P+ + L L + + S+ + + +I
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPN--LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L+ + +T + + +L L +Q + + E +L L + +
Sbjct: 142 DLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 33.9 bits (78), Expect = 0.007
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
+ LLN + ++I +L + +T + KLT + +L +
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDC-SSNKLTEID---VTPLTQLTYFD 239
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
N L L + L L+ L I
Sbjct: 240 CSVNPLTELDVSTLSKLTTLH---CIQTDLLEI 269
Score = 33.9 bits (78), Expect = 0.008
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
+ PLL + +++ E+ ++T +T + +KK+T L +L L+
Sbjct: 123 VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLD 176
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
NK+ L K L LN N + +
Sbjct: 177 CSFNKITELD---VSQNKLLNRLNCDTNNITKL 206
Score = 33.5 bits (77), Expect = 0.011
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 38 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 97
+ ++ ++T + + +T L KLV L L +
Sbjct: 274 NTQLIYFQAEGCRKIKELDVTHNTQLYLLDC-QAAGITELD---LSQNPKLVYLYLNNTE 329
Query: 98 LKYLPENLFESLKELYTLNLKNNQLENIT 126
L L +L +L+ N +++ +
Sbjct: 330 LTELD---VSHNTKLKSLSCVNAHIQDFS 355
Score = 32.7 bits (75), Expect = 0.018
Identities = 13/102 (12%), Positives = 27/102 (26%), Gaps = 9/102 (8%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
+++ + L + + I EL + + + L + LT L
Sbjct: 284 GCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTE-LTELD---VS 336
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
KL L ++ + L Q +
Sbjct: 337 HNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITM 376
Score = 32.4 bits (74), Expect = 0.027
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 12/121 (9%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 64
D F + + + ++ + + L L ++ SSI ++ T +T
Sbjct: 13 DWFPDDNFASEVAAAFEMQATDTIS---EEQLATLTSLDCHNSSITDMTG--IEKLTGLT 67
Query: 65 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
++ T + +T+L L L NKL L L +L LN N+L
Sbjct: 68 KLICTSNN-ITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTK 120
Query: 125 I 125
+
Sbjct: 121 L 121
Score = 30.0 bits (68), Expect = 0.17
Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 14/120 (11%)
Query: 7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
++ L + + ++ L L +I ++I L +TN+T +
Sbjct: 38 EEQLATLTSLDCHNSS--ITDMTG--IEKLTGLTKLICTSNNITTLD---LSQNTNLTYL 90
Query: 67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
KLT+L KL L NKL L L LN N L I
Sbjct: 91 ACD-SNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID 143
Score = 29.3 bits (66), Expect = 0.36
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
L L + + EL + +T + L + +L+ +
Sbjct: 229 VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCI-QTDLLEID---LTHNTQLIYFQ 281
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ + + E +LY L+ + + +
Sbjct: 282 AEGCRK--IKELDVTHNTQLYLLDCQAAGITEL 312
Score = 28.5 bits (64), Expect = 0.53
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
L L + + + +L + +T + LT + +L +L+
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNC-ARNTLTEID---VSHNTQLTELD 154
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
NK + +L TL+ N++ +
Sbjct: 155 CHLNKKITKLD--VTPQTQLTTLDCSFNKITELD 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.008
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 16/107 (14%)
Query: 4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL-FWNSTN 62
K L KYL ++LP + P ++I E SI + + W N
Sbjct: 304 KSLLL--KYLDC--------RPQDLPREVLTTNPRRLSII-AE-SIRDGLATWDNWKHVN 351
Query: 63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL 109
+ L L +R +L + +P L +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKM--FDRLSVFPPSAH-IPTILLSLI 395
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 33.3 bits (77), Expect = 0.012
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 59 NSTNITNIVLTGHKKLT-SLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLN 116
N + + + G L +P + + +L L + + +P+ L +K L TL+
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLD 131
Query: 117 LKNNQLE 123
N L
Sbjct: 132 FSYNALS 138
Score = 30.2 bits (69), Expect = 0.12
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 76 SLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQL 122
K K+ L +N L L + K L L+L+NN++
Sbjct: 212 DASVLFGS-DKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRI 256
Score = 29.8 bits (68), Expect = 0.17
Identities = 16/100 (16%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 27 ELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRD 84
+P + A L L+ + + ++++ +P L + + + L+ +LP ++
Sbjct: 92 PIPPAI-AKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDF-SYNALSGTLPPSISS- 147
Query: 85 CKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 123
LV + N++ +P++ K ++ + N+L
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Score = 26.7 bits (60), Expect = 2.2
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 54 SDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKE 111
S LF + N I L L L K L L+L+ N++ LP+ L LK
Sbjct: 214 SVLFGSDKNTQKIHL-AKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGL-TQLKF 269
Query: 112 LYTLNLKNNQLE 123
L++LN+ N L
Sbjct: 270 LHSLNVSFNNLC 281
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 33.1 bits (76), Expect = 0.014
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ L L L RN +K + ENL L L + NQ+ ++
Sbjct: 69 MENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL 108
Score = 25.8 bits (57), Expect = 3.5
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L +L + N++ L + E L L L + NN++ N
Sbjct: 92 ADTLEELWISYNQIASL-SGI-EKLVNLRVLYMSNNKITNWG 131
Score = 25.0 bits (55), Expect = 6.4
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 82 FRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENITR 127
L L + NK+ E + +L +L L L N L N +
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 32.3 bits (73), Expect = 0.031
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 51 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP--ENLFES 108
L SD + NI ++VL + + + + +L+ L L N+L L ++ +
Sbjct: 136 GLRSDPDLVAQNI-DVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK 194
Query: 109 LKELYTLNLKNNQLENI 125
L LNL N+L++
Sbjct: 195 APNLKILNLSGNELKSE 211
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.30
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 22 KDSLKELPSGL--FA--NLPLL--NTVI 43
K +LK+L + L +A + P L +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
Score = 27.6 bits (60), Expect = 0.80
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 94 QRNKLKYLPENLFESLKELY------TLNLKNNQLE 123
++ LK L + SLK LY L + +E
Sbjct: 18 EKQALKKL-QA---SLK-LYADDSAPALAI-KATME 47
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 29.3 bits (66), Expect = 0.30
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 34 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 93
L + S+ + + +I I+ + + S+ + + KL L
Sbjct: 21 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIAN-NSDIKSVQG--IQYLPNVTKLFL 75
Query: 94 QRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
NKL + +LK L L L N++++++
Sbjct: 76 NGNKLTDIKP--LANLKNLGWLFLDENKVKDLS 106
Score = 25.8 bits (57), Expect = 4.0
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
+ L L+T+ L ++ I+++ T + N+ L ++ L + K L LE
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL-SKNHISDLRA--LAGLKNLDVLE 206
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L + P N +L T+ + L
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 240
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 27.3 bits (61), Expect = 1.3
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
L +L L N+L+ LK L L+++NN+L++I
Sbjct: 104 PSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV 144
Score = 27.3 bits (61), Expect = 1.5
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
VK L + + L + L + N N+ ++++
Sbjct: 17 GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA 57
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 27.0 bits (60), Expect = 1.7
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 14/104 (13%)
Query: 34 ANLPLLNTVILGESSI----AELPSDLFWNSTNITNIVLT----GHKKLTSLPSTLFRDC 85
N P L ++I G + + + + F + + + + + + L C
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215
Query: 86 KKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLEN 124
++L L+LQ N L L +S L L L + L
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIAL-KSWPNLRELGLNDCLLSA 258
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 26.8 bits (60), Expect = 2.3
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 79 STLFRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQL 122
+ R + L +L L N+L + L E L E +L +L +K+
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325
Score = 25.3 bits (56), Expect = 6.3
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 79 STLFRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQL 122
+++ R +L + N + + L + L +S +L L L++ +
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211
Score = 25.3 bits (56), Expect = 6.5
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 79 STLFRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQL 122
+ L +L L NKL L L L TL + +
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 25.8 bits (57), Expect = 4.9
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 44 LGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTLFRDCKKLVKLELQRNKL- 98
L S EL ++T++ L+ G K L L + L L N L
Sbjct: 34 LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93
Query: 99 ----KYLPENLFESLKELYTLNLKNNQL 122
L + L + L+L N
Sbjct: 94 YKSSDELVKTLAAIPFTITVLDLGWNDF 121
Score = 25.4 bits (56), Expect = 6.1
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 44 LGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTLFRDCKKLVKLELQRNKL- 98
LG + EL L N+T++ L+ +K L TL + L+L N
Sbjct: 63 LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122
Query: 99 ----KYLPENLFESLKELYTLNLKNNQL 122
+ + +LNL+ N L
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDL 150
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase
,hydrolas transferase, hydrolase; 1.30A {Streptococcus
agalactiae}
Length = 216
Score = 25.3 bits (55), Expect = 5.7
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVK-----LELQRNKLKY 100
N T+ V+T H + LF + KKL K ++ + + Y
Sbjct: 110 NSTHTVITAHSGIPD--KELFSNLKKLKKGDKFYIQNIKETIAY 151
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 25.6 bits (57), Expect = 5.8
Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 43 ILGESSI---AELPS--DLFWNSTNITNIVLTGHKKLTSL--PSTLFRDCKKLVKLELQR 95
I G S AE+ + + + +I ++ S + +
Sbjct: 129 IFGSDSPEADAEVIALASSILDRLGLQDIYEI---RINSRKIMEEIIGGMTSSDPFSVFS 185
Query: 96 NKLKYLPENLFESLKELYTLNLKNNQLENI 125
+Y + E + +L + + + + I
Sbjct: 186 IIDRYHKISREEFVDQLRSAGIGEDGVSMI 215
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A
{Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A
1ija_A 2kid_A* 1t2p_A
Length = 145
Score = 24.7 bits (54), Expect = 7.5
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 64 TNIVLTGHKKLTSLPSTLFRDCKKLVK-----LELQRNKLKY 100
NI + GH + F + K K ++ KY
Sbjct: 52 QNISIAGHTFIDRPN-YQFTNLKAAKKGSMVYFKVGNETRKY 92
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA
PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB:
1m57_C*
Length = 266
Score = 24.8 bits (55), Expect = 8.6
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 36 LPLLNTVIL 44
LPL+NT+IL
Sbjct: 133 LPLINTLIL 141
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system,
complex (oxidoreductase/antibody), electron transport;
HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP:
f.25.1.1
Length = 273
Score = 24.9 bits (55), Expect = 8.7
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 36 LPLLNTVIL 44
LPL+NT+IL
Sbjct: 140 LPLINTLIL 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.380
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,784,354
Number of extensions: 91720
Number of successful extensions: 1590
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 468
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)