RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8031
(127 letters)
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 44.5 bits (103), Expect = 6e-07
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ L LP+ +F V L++ R ++ LP E+LK+L + N +
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 36.4 bits (82), Expect = 3e-04
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 65 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ L K+T +PS L R+ ++L KL+ + + F +L + + N
Sbjct: 11 RVFLCQESKVTEIPSDLPRN---AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64
Score = 32.6 bits (72), Expect = 0.007
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 20 YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 77
++L+ELP+ +F + + + I LPS N + KKL +L
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241
Score = 28.7 bits (62), Expect = 0.18
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 94 QRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
Q +K+ +P +L + EL +L I
Sbjct: 16 QESKVTEIPSDLPRNAIEL---RFVLTKLRVI 44
Score = 27.6 bits (59), Expect = 0.45
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 100 YLPENLFESLKELYTLNLKNNQLENI 125
LP ++F L++ ++ ++
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSL 216
Score = 26.8 bits (57), Expect = 0.78
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 40 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 96
+ ES + E+PSDL N + KL + F L K+E+ +N
Sbjct: 11 RVFLCQESKVTEIPSDLP---RNAIELRFV-LTKLRVIQKGAFSGFGDLEKIEISQN 63
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 43.9 bits (102), Expect = 1e-06
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 24 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
L+++P L + LL+ L + I E+ F N N+ ++L + K++ + F
Sbjct: 21 GLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNLKNLHTLIL-INNKISKISPGAFA 76
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
KL +L L +N+LK LPE + ++L+EL + ++
Sbjct: 77 PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 115
Score = 35.0 bits (79), Expect = 0.001
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L +P L D L+LQ NK+ + + F++LK L+TL L NN++ I
Sbjct: 19 DLGLEKVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Score = 33.9 bits (76), Expect = 0.003
Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 27/143 (18%)
Query: 3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
F +K L + + + + ++ G FA L L + L ++ + ELP +
Sbjct: 47 KDGDFKNLKNLHTLILINN--KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 104
Query: 63 ITN----------------------IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 100
+ + T K + + + F+ KKL + + +
Sbjct: 105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 164
Query: 101 LPENLFESLKELYTLNLKNNQLE 123
+P+ L SL EL+ L N++
Sbjct: 165 IPQGLPPSLTELH---LDGNKIT 184
Score = 27.3 bits (59), Expect = 0.53
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 64
F MK L I+I+ + +P GL +L L+ L + I ++ + N+
Sbjct: 144 GAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNL- 197
Query: 65 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
+ ++++ + + L +L L NKL +P L K + + L NN +
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISA 256
Query: 125 I 125
I
Sbjct: 257 I 257
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 39.3 bits (90), Expect = 4e-05
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
+ LT+LP L +D L L N L L LNL +
Sbjct: 19 KRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Score = 30.8 bits (68), Expect = 0.032
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 78 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
P +++ + L LP +L + L +L N L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTIL---HLSENLLYTF 46
Score = 27.0 bits (58), Expect = 0.75
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 94 QRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
N L LP L L+ L TL L+ N L I
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 35.9 bits (81), Expect = 5e-04
Identities = 15/103 (14%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 20 YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 79
++ +KE+ + +F L L T+ L ++ I+ + F + ++T++ L + +
Sbjct: 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144
Query: 80 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
F + + K L + ++++ +L +++
Sbjct: 145 AWFAEWLR--KKSLNGGAARC---GAPSKVRDVQIKDLPHSEF 182
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 35.6 bits (80), Expect = 7e-04
Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 20 YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 79
Y+ ++ L P L + + + + ELP+ + ++ L +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIA-SFNHLAEVPE 321
Query: 80 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 113
+ L +L ++ N L+ P+ + ES+++L
Sbjct: 322 LP----QNLKQLHVEYNPLREFPD-IPESVEDLR 350
Score = 35.6 bits (80), Expect = 0.001
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 57 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116
++ + + + KL LP+ +L +L N L +PE + L L+
Sbjct: 280 CDLPPSLEELNV-SNNKLIELPALP----PRLERLIASFNHLAEVPE----LPQNLKQLH 330
Query: 117 LKNNQLENI 125
++ N L
Sbjct: 331 VEYNPLREF 339
Score = 31.7 bits (70), Expect = 0.017
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
++ +L L +L + NKL LP L L N L +
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEV 319
Score = 30.6 bits (67), Expect = 0.046
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
++ +LEL L LP E L +L N L +
Sbjct: 37 DRQAHELELNNLGLSSLP----ELPPHLESLVASCNSLTEL 73
Score = 29.0 bits (63), Expect = 0.14
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ L+SLP L L N L LP E + L +L + NN L+ +
Sbjct: 47 NLGLSSLPELP----PHLESLVASCNSLTELP----ELPQSLKSLLVDNNNLKAL 93
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 34.1 bits (77), Expect = 0.002
Identities = 8/44 (18%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ + + +L+L+ K+ + ENL +L + ++ +N++ +
Sbjct: 14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL 56
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 32.1 bits (71), Expect = 0.011
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 114
+ L ++P + ++ L N++ ++P F + + L
Sbjct: 20 QQGLQAVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTI 60
Score = 32.1 bits (71), Expect = 0.014
Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 29/148 (19%)
Query: 2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
P + A + + + H + + +P+ F L + L + +A + + F
Sbjct: 26 VPVGIPAASQRIFL-----HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80
Query: 62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR------------------------NK 97
+ + L+ + +L S+ F +L L L R N
Sbjct: 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140
Query: 98 LKYLPENLFESLKELYTLNLKNNQLENI 125
L+ LP++ F L L L L N++ ++
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSV 168
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 31.5 bits (70), Expect = 0.021
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
++ + KL +L NK+ + +L + L+ +NQ+ ++T
Sbjct: 315 YFNNISDISP--VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLT 367
Score = 31.1 bits (69), Expect = 0.032
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 35 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 94
NL L + L ++I+++ + T + + + K++ + S + + L
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF-ANNKVSDVSS--LANLTNINWLSAG 359
Query: 95 RNKLKYLPENLFESLKELYTLNLKNN 120
N++ L +L + L L +
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383
Score = 28.0 bits (61), Expect = 0.33
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
D ++ L+ R +K + E L L +N NNQL +IT
Sbjct: 42 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDIT 82
Score = 26.9 bits (58), Expect = 0.88
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 33 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
+ L L + LG + I+ + +T + + + + K L L
Sbjct: 259 LSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLT 313
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
L N + + SL +L L NN++ ++
Sbjct: 314 LYFNNISDISP--VSSLTKLQRLFFANNKVSDV 344
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 29.6 bits (65), Expect = 0.081
Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 71 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
K++ + L+++ L+ N++ + + L+ + L N
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
Score = 28.1 bits (61), Expect = 0.31
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
+ KL L+ NK+ + SL L ++LKNNQ+ ++
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210
Score = 24.2 bits (51), Expect = 6.2
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
+K+ ++ + L + TL+ + I
Sbjct: 19 ANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTTIE 57
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 29.6 bits (64), Expect = 0.097
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL-----KYLPENLFESLKELYT 114
S +I ++ + + + + L ++ + L L K + L L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAE 59
Query: 115 LNLKNNQLENI 125
LNL++N+L ++
Sbjct: 60 LNLRSNELGDV 70
Score = 29.6 bits (64), Expect = 0.10
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 79 STLFRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLENITR 127
+ L +L+L N L L E++ + L L L +
Sbjct: 390 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443
Score = 27.2 bits (58), Expect = 0.57
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 14/87 (16%)
Query: 44 LGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTLFRDCKKLVKLELQRNKL- 98
L ++ AEL L + L + + S L R L +L L+ N+L
Sbjct: 14 LSDARWAELLPLL----QQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELG 68
Query: 99 ----KYLPENLFESLKELYTLNLKNNQ 121
+ + L ++ L+L+N
Sbjct: 69 DVGVHCVLQGLQTPSCKIQKLSLQNCC 95
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 29.5 bits (64), Expect = 0.11
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 82 FRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLE 123
+ L L LQ N++ + L + E + +L L L N+
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315
Score = 28.7 bits (62), Expect = 0.21
Identities = 7/51 (13%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 70 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
+ +L + + L+ LEL N+ + + + ++E+++ +
Sbjct: 286 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV-DEIREVFSTRGRGE 335
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 26.6 bits (57), Expect = 0.82
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 93 LQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
L+ N++ LK L++LN+ N L
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 26.0 bits (57), Expect = 1.5
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 38 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 71
+ ++ G +++ + N VL GH
Sbjct: 249 DFSDILFGTPQPVVSEANMGVLDPDQVNFVLHGH 282
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 24.4 bits (53), Expect = 5.7
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 38 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 71
L+ + G ++L NI + GH
Sbjct: 205 ELSDALFGTPQPVVSAANLGVMKRGAVNIAVNGH 238
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 24.2 bits (51), Expect = 5.9
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
+ +K L + + L ++ TL +++I
Sbjct: 18 AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSID 56
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 23.5 bits (50), Expect = 7.9
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 91 LELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENI 125
L L N+L+ S L LNL+ N L
Sbjct: 70 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 23.5 bits (49), Expect = 8.2
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 48 SIAELPSDLFWNSTNITNIVLTGH-KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 106
+I +T + L G + + +TL K L L N ++ +
Sbjct: 10 AIRIFEERKSVVATEAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISS--L 66
Query: 107 ESLKELYTLN 116
++ L L+
Sbjct: 67 SGMENLRILS 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.380
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 438,750
Number of extensions: 18166
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 55
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)