Query psy8033
Match_columns 267
No_of_seqs 166 out of 237
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 16:44:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nr5_A MAF1, repressor of RNA 100.0 1.3E-60 4.6E-65 408.9 6.4 153 2-257 12-164 (164)
2 3ulx_A Stress-induced transcri 12.3 34 0.0012 28.8 -0.8 12 212-223 47-58 (174)
3 1jei_A Emerin; membrane protei 11.9 97 0.0033 21.4 1.6 7 55-61 45-51 (53)
4 1ut7_A No apical meristem prot 8.6 28 0.00095 29.2 -2.7 12 212-223 49-60 (171)
5 1i17_A Mouse doppel, prion-lik 8.6 90 0.0031 24.2 0.5 20 199-218 82-101 (107)
6 1lg4_A Doppel protein, prion-l 8.6 1.2E+02 0.004 24.3 1.1 20 199-218 106-125 (129)
7 2dk7_A Transcription elongatio 8.3 1.5E+02 0.0051 21.8 1.5 17 232-248 18-40 (73)
8 1hle_B Horse leukocyte elastas 7.4 2.7E+02 0.0093 16.3 2.2 17 238-254 10-26 (31)
9 2kqp_A Insulin; carbohydrate m 7.0 1.2E+02 0.004 22.4 0.4 12 239-250 22-33 (86)
10 2riv_B Thyroxine-binding globu 6.6 3E+02 0.01 17.2 2.2 17 238-254 16-32 (40)
No 1
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=100.00 E-value=1.3e-60 Score=408.87 Aligned_cols=153 Identities=53% Similarity=0.975 Sum_probs=139.9
Q ss_pred cchHHHHHhhccccCCCeEEEeeceeeecccccchHHHHHHhhhhhCCCccccccCCCCCCCCCCCCCCCccceeecccc
Q psy8033 2 TARFEALNRALCINVGDSKIVGRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYRIESYSCK 81 (267)
Q Consensus 2 ~~~~e~ln~~L~~~~~d~~i~gr~EayScK~~g~DKkL~K~l~~~~~~~~~~l~~lSpp~~~~~~sp~~~~~r~esyS~~ 81 (267)
|.+||+||++|++++|||+|.||||+|||| |. +
T Consensus 12 ~~~~~~ln~~l~~~~gd~~i~g~iEayScK----------------------------pL-----------------~-- 44 (164)
T 3nr5_A 12 NSSFEAINSQLTVETGDAHIIGRIESYSCK----------------------------PL-----------------S-- 44 (164)
T ss_dssp CHHHHHHHHHSBCC--CCCBCEEEEEEEEC----------------------------CC-----------------C--
T ss_pred cCCHHHHHhhhceecCceEEEEEEeeeccc----------------------------cc-----------------c--
Confidence 689999999999999999999999999999 11 0
Q ss_pred ccCCCcccccccCCccCCCcccccccCCcccccccCCCCCCCccccccCCCchhHHhhhccccCCCccccccCCCCCCCC
Q psy8033 82 MAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYSYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGL 161 (267)
Q Consensus 82 ~~g~~~~~~k~f~~~~~~~rk~l~~Ls~pi~tLn~s~~~pdydfS~~~~~~~~~~~~~~~~e~~~s~~~l~~~Sp~~~~~ 161 (267)
...+||||+|| |+|||++ |+||||||.+.
T Consensus 45 ---------------~~~SRKTl~yL---IaTLNas-f~PDYDFS~lr-------------------------------- 73 (164)
T 3nr5_A 45 ---------------DKCSRKTLFYL---IATLNES-FRPDYDFSTAR-------------------------------- 73 (164)
T ss_dssp ---------------TTCSCHHHHHH---HHHHHHH-HTTTCCCTTCC--------------------------------
T ss_pred ---------------cchhhhhHHHH---HHHHHhh-cCCCCCcCCCC--------------------------------
Confidence 11349999999 9999999 77999999733
Q ss_pred CCCcccCCceecccHHHHHHhhhhcccccccccccchhHHHHHHhhhhccCCcceeEEecCCCCCCCCCCCCccceehee
Q psy8033 162 GISPVAASLVMRKVLYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYF 241 (267)
Q Consensus 162 ~~s~~~~~F~~e~s~~~v~~~id~~L~~~~~~~~~~~~~~lW~~Id~~I~L~dCeIYsY~Pd~~~DPf~E~G~LWSfnYF 241 (267)
|++|.+|+++++|++.||++|++++++.+.+++++||++||++|+|+||+||+|+||.++|||+|+|+|||||||
T Consensus 74 -----p~~F~re~sl~~V~~~In~~L~s~~~~~~~~~~~~lW~~Id~~I~l~dC~IYsY~Pd~~~DPf~e~g~lWSfnYF 148 (164)
T 3nr5_A 74 -----SHEFSREPSLSWVVNAVNCSLFSAVREDFKDLKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYF 148 (164)
T ss_dssp -----GGGEEECSCHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCGGGCEEEEECCCGGGCTTCSCCCSCEEEEE
T ss_pred -----HHHCEecCCHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhhcCccCCeEEEEcCCCCCCCCCCCCceeeeeee
Confidence 799999999999999999999999887788999999999999999999999999999989999999999999999
Q ss_pred eeeCccceEEEEEEEe
Q psy8033 242 FYNKKLKRIVFFSCRA 257 (267)
Q Consensus 242 FyNKklKRVlff~~r~ 257 (267)
|||||+||||||+|||
T Consensus 149 FyNKklKRVl~f~cr~ 164 (164)
T 3nr5_A 149 FYNKRLKRIVFFSCRS 164 (164)
T ss_dssp EEETTTTEEEEEEEEC
T ss_pred EEecCcceEEEEEEeC
Confidence 9999999999999996
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=12.28 E-value=34 Score=28.80 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=9.8
Q ss_pred CCcceeEEecCC
Q psy8033 212 LPECDIYSYNPD 223 (267)
Q Consensus 212 L~dCeIYsY~Pd 223 (267)
+.++|||.+.|-
T Consensus 47 I~evDvy~~~Pw 58 (174)
T 3ulx_A 47 IAEVDLYKFDPW 58 (174)
T ss_dssp CEECCGGGSCGG
T ss_pred eeecccccCCch
Confidence 457899999986
No 3
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=11.91 E-value=97 Score=21.39 Aligned_cols=7 Identities=57% Similarity=1.070 Sum_probs=3.6
Q ss_pred ccCCCCC
Q psy8033 55 QALSPPQ 61 (267)
Q Consensus 55 ~~lSpp~ 61 (267)
..+|||.
T Consensus 45 ~~~s~~~ 51 (53)
T 1jei_A 45 RRLSPPS 51 (53)
T ss_dssp SCCCCSS
T ss_pred CCCCCCC
Confidence 3456654
No 4
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=8.62 E-value=28 Score=29.19 Aligned_cols=12 Identities=33% Similarity=0.853 Sum_probs=9.6
Q ss_pred CCcceeEEecCC
Q psy8033 212 LPECDIYSYNPD 223 (267)
Q Consensus 212 L~dCeIYsY~Pd 223 (267)
+.++|||.+.|.
T Consensus 49 I~e~Diy~~~Pw 60 (171)
T 1ut7_A 49 IAEIDLYKFDPW 60 (171)
T ss_dssp SEECCGGGSCGG
T ss_pred EeecccccCChh
Confidence 457899999886
No 5
>1i17_A Mouse doppel, prion-like protein; DPL, unknown function; NMR {Mus musculus} SCOP: d.6.1.1
Probab=8.60 E-value=90 Score=24.24 Aligned_cols=20 Identities=20% Similarity=0.614 Sum_probs=17.2
Q ss_pred hHHHHHHhhhhccCCcceeE
Q psy8033 199 RPHLWAALEDEIVLPECDIY 218 (267)
Q Consensus 199 ~~~lW~~Id~~I~L~dCeIY 218 (267)
..-||..|.+...++.||..
T Consensus 82 qriLwrLirElCs~k~Cdfw 101 (107)
T 1i17_A 82 QRVLWRLIKEICSAKHCDFW 101 (107)
T ss_dssp HHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHHHHhccccceee
Confidence 35689999999999999864
No 6
>1lg4_A Doppel protein, prion-like protein; scrapie, prion protein; NMR {Homo sapiens} SCOP: d.6.1.1
Probab=8.60 E-value=1.2e+02 Score=24.28 Aligned_cols=20 Identities=20% Similarity=0.669 Sum_probs=17.2
Q ss_pred hHHHHHHhhhhccCCcceeE
Q psy8033 199 RPHLWAALEDEIVLPECDIY 218 (267)
Q Consensus 199 ~~~lW~~Id~~I~L~dCeIY 218 (267)
..-||..|.|...++.||..
T Consensus 106 qRiLwrLirElCs~k~Cdfw 125 (129)
T 1lg4_A 106 QQVLWRLVQELCSLKHCEFW 125 (129)
T ss_dssp HHHHHHHHHHHHHSSCCSSS
T ss_pred HHHHHHHHHHHhccccccee
Confidence 45689999999999999864
No 7
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=8.33 E-value=1.5e+02 Score=21.77 Aligned_cols=17 Identities=35% Similarity=0.938 Sum_probs=13.2
Q ss_pred CCccceehe------eeeeCccc
Q psy8033 232 DGSLWSFNY------FFYNKKLK 248 (267)
Q Consensus 232 ~G~LWSfnY------FFyNKklK 248 (267)
.|+.|..++ ||||..-|
T Consensus 18 pgt~W~~v~T~dGR~fyyN~~Tk 40 (73)
T 2dk7_A 18 PGTPWCVVWTGDERVFFYNPTTR 40 (73)
T ss_dssp SSSSCEEEEESSSCEEEEETTTT
T ss_pred CCCCcEEEECCCCCEEEecCccc
Confidence 478898876 88998765
No 8
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=7.43 E-value=2.7e+02 Score=16.25 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=13.5
Q ss_pred eheeeeeCccceEEEEE
Q psy8033 238 FNYFFYNKKLKRIVFFS 254 (267)
Q Consensus 238 fnYFFyNKklKRVlff~ 254 (267)
|.|+.+++.-+.|+|+-
T Consensus 10 Flf~I~~~~t~~iLF~G 26 (31)
T 1hle_B 10 FIFFIRHNPSANILFLG 26 (31)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEEECCCCcEEEEE
Confidence 56888888888898873
No 9
>2kqp_A Insulin; carbohydrate metabolism, cleavage on PAIR of BAS residues, diabetes mellitus, disease mutation, disulfide BO glucose metabolism, hormone; NMR {Homo sapiens}
Probab=6.96 E-value=1.2e+02 Score=22.45 Aligned_cols=12 Identities=42% Similarity=0.683 Sum_probs=8.8
Q ss_pred heeeeeCccceE
Q psy8033 239 NYFFYNKKLKRI 250 (267)
Q Consensus 239 nYFFyNKklKRV 250 (267)
+-||||++.||-
T Consensus 22 rGf~y~~~~kR~ 33 (86)
T 2kqp_A 22 RGFFYTKPTRRE 33 (86)
T ss_dssp GCCCCCCSCSSC
T ss_pred CCcccCCccccc
Confidence 357899987774
No 10
>2riv_B Thyroxine-binding globulin; TBG, serpin, cleaved, mutation, glycoprotein, secreted, signaling protein; 1.50A {Homo sapiens} PDB: 2riw_B* 2xn3_B*
Probab=6.58 E-value=3e+02 Score=17.17 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=13.7
Q ss_pred eheeeeeCccceEEEEE
Q psy8033 238 FNYFFYNKKLKRIVFFS 254 (267)
Q Consensus 238 fnYFFyNKklKRVlff~ 254 (267)
|.|+.+++.-+-|+|+-
T Consensus 16 Flf~I~~~~t~~iLF~G 32 (40)
T 2riv_B 16 FMLLILERSTRSILFLG 32 (40)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCcEEEEE
Confidence 56888888888899874
Done!