Query psy8033
Match_columns 267
No_of_seqs 166 out of 237
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 16:44:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8033.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8033hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ut7a_ b.143.1.1 (A:) No apic 15.0 6 0.00044 30.7 -2.7 12 212-223 49-60 (166)
2 d2gysa1 b.1.2.1 (A:1-103) Comm 8.4 53 0.0039 23.8 1.0 16 208-223 77-92 (103)
3 d1x1ga1 b.55.1.1 (A:8-123) Ple 7.6 1.7E+02 0.012 18.8 3.4 42 209-253 56-97 (116)
4 d2oola1 d.110.2.1 (A:140-333) 5.7 2.5E+02 0.018 20.8 3.9 21 204-224 32-52 (194)
5 d1vr7a1 d.156.1.2 (A:2-118) S- 5.3 1.8E+02 0.013 20.4 2.6 26 23-48 75-100 (117)
6 d2veaa1 d.110.2.1 (A:131-326) 5.0 2.3E+02 0.017 21.1 3.3 43 176-224 10-52 (196)
7 d2fug21 c.47.1.21 (2:3-180) NA 5.0 2.8E+02 0.02 21.0 3.8 34 15-49 71-104 (178)
8 d2hh6a1 a.69.4.1 (A:1-112) Unc 5.0 86 0.0063 22.8 0.5 17 31-47 6-24 (112)
9 d1nekb2 d.15.4.2 (B:1-106) Suc 4.9 1.3E+02 0.0091 21.3 1.4 14 216-229 6-19 (106)
10 d2f2ha1 b.150.1.1 (A:666-773) 4.5 1E+02 0.0074 22.0 0.6 9 119-127 11-19 (108)
No 1
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=14.98 E-value=6 Score=30.74 Aligned_cols=12 Identities=33% Similarity=0.853 Sum_probs=9.4
Q ss_pred CCcceeEEecCC
Q psy8033 212 LPECDIYSYNPD 223 (267)
Q Consensus 212 L~dCeIYsY~Pd 223 (267)
+.+||||.+.|.
T Consensus 49 I~~~Dvy~~~Pw 60 (166)
T d1ut7a_ 49 IAEIDLYKFDPW 60 (166)
T ss_dssp SEECCGGGSCGG
T ss_pred ceeccCCcCChh
Confidence 567889988875
No 2
>d2gysa1 b.1.2.1 (A:1-103) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.37 E-value=53 Score=23.82 Aligned_cols=16 Identities=31% Similarity=0.823 Sum_probs=13.4
Q ss_pred hhccCCcceeEEecCC
Q psy8033 208 DEIVLPECDIYSYNPD 223 (267)
Q Consensus 208 ~~I~L~dCeIYsY~Pd 223 (267)
+.+.+.+=|+|||.||
T Consensus 77 ~~F~~~d~DyfSF~pd 92 (103)
T d2gysa1 77 QSFVVTDVDYFSFQPD 92 (103)
T ss_dssp SCCCTTCEEEEEEEES
T ss_pred hheeeeccceEeecCC
Confidence 3466788999999999
No 3
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.61 E-value=1.7e+02 Score=18.83 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=21.5
Q ss_pred hccCCcceeEEecCCCCCCCCCCCCccceeheeeeeCccceEEEE
Q psy8033 209 EIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLKRIVFF 253 (267)
Q Consensus 209 ~I~L~dCeIYsY~Pd~~~DPf~E~G~LWSfnYFFyNKklKRVlff 253 (267)
.|+|.+|.|..-... .++....+..+-+.++.-+... |..+|
T Consensus 56 ~i~L~~~~i~~~~~~--~~~~~~~~~~~~~~f~i~~~~~-~~~~f 97 (116)
T d1x1ga1 56 GFSLRGSLVSALEDN--GVPTGVKGNVQGNLFKVITKDD-THYYI 97 (116)
T ss_dssp CEESTTCCCEECCSS--SSCSSCSSCCCSSCEEECCTTC-CCEEE
T ss_pred EEEcCCCEEEEeccc--CcccccccccccceeEEEeCCC-eEEEE
Confidence 467888887554433 2444434544444444555443 33344
No 4
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=5.72 E-value=2.5e+02 Score=20.79 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=16.1
Q ss_pred HHhhhhccCCcceeEEecCCC
Q psy8033 204 AALEDEIVLPECDIYSYNPDL 224 (267)
Q Consensus 204 ~~Id~~I~L~dCeIYsY~Pd~ 224 (267)
+-|-+.+..+-|-||.|.||.
T Consensus 32 ~eir~~L~~DRv~Iy~f~~~~ 52 (194)
T d2oola1 32 SEVRRITGFDRIKVYQFAADW 52 (194)
T ss_dssp HHHHHHHCCSEEEEEEECTTS
T ss_pred HHHHHHHCCCEEEEEEEcCCC
Confidence 334556778999999999984
No 5
>d1vr7a1 d.156.1.2 (A:2-118) S-adenosylmethionine decarboxylase (SamDC, SpeH) {Thermotoga maritima [TaxId: 2336]}
Probab=5.31 E-value=1.8e+02 Score=20.36 Aligned_cols=26 Identities=8% Similarity=0.261 Sum_probs=19.0
Q ss_pred eeceeeecccccchHHHHHHhhhhhC
Q psy8033 23 GRIESYSCKMAGNDKQFYKKFNSEQG 48 (267)
Q Consensus 23 gr~EayScK~~g~DKkL~K~l~~~~~ 48 (267)
..|++|||...-+-.+..+.|.+.++
T Consensus 75 ~~iDifsC~~~~~~~~~~~~l~~~f~ 100 (117)
T d1vr7a1 75 AAIDLFTCGEDVDPWKAFEHLKKALK 100 (117)
T ss_dssp EEEEEEEESTTCCHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999654455678888888765
No 6
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=5.03 E-value=2.3e+02 Score=21.12 Aligned_cols=43 Identities=7% Similarity=0.128 Sum_probs=23.6
Q ss_pred HHHHHHhhhhcccccccccccchhHHHHHHhhhhccCCcceeEEecCCC
Q psy8033 176 LYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDL 224 (267)
Q Consensus 176 ~~~v~~~id~~L~~~~~~~~~~~~~~lW~~Id~~I~L~dCeIYsY~Pd~ 224 (267)
+..+.++|...| +...+.+..=+-|-+....+-|-||.|.||.
T Consensus 10 ~~~ii~~Ir~Sl------dl~~Il~tav~eir~lL~~DRV~iy~f~~d~ 52 (196)
T d2veaa1 10 ANAALNRLRQQA------NLRDFYDVIVEEVRRMTGFDRVMLYRFDENN 52 (196)
T ss_dssp HHHHHHCC----------CHHHHHHHHHHHHHHHHCCSEEEEEEECTTS
T ss_pred HHHHHHHHHhcC------CHHHHHHHHHHHHHHHHCCCeEEEEEECCCC
Confidence 445555555433 1222333333344556778999999999884
No 7
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
Probab=5.03 E-value=2.8e+02 Score=21.03 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=26.6
Q ss_pred cCCCeEEEeeceeeecccccchHHHHHHhhhhhCC
Q psy8033 15 NVGDSKIVGRIESYSCKMAGNDKQFYKKFNSEQGT 49 (267)
Q Consensus 15 ~~~d~~i~gr~EayScK~~g~DKkL~K~l~~~~~~ 49 (267)
.-..-++.--|..-+|.+.|.+ +|.+.++++++.
T Consensus 71 ~p~gk~~i~VC~~~~C~~~G~~-~l~~~l~~~Lgi 104 (178)
T d2fug21 71 VPTGKYHLQVCATLSCKLAGAE-ELWDYLTETLGI 104 (178)
T ss_dssp SCCCSEEEEEECSHHHHTTTHH-HHHHHHHHHHCC
T ss_pred cccccceeEecCchhhhhccch-hhHHHHHhhccc
Confidence 3344456667899999999988 788999999863
No 8
>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980 {Bacillus halodurans [TaxId: 86665]}
Probab=4.98 E-value=86 Score=22.80 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=15.0
Q ss_pred ccccc--hHHHHHHhhhhh
Q psy8033 31 KMAGN--DKQFYKKFNSEQ 47 (267)
Q Consensus 31 K~~g~--DKkL~K~l~~~~ 47 (267)
|++|+ +||-||.++.+.
T Consensus 6 ki~g~~~~kke~k~~~~R~ 24 (112)
T d2hh6a1 6 KMIGSLNDKREWKAMEARA 24 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHCchHhhHHHHHHHHHH
Confidence 78885 999999999985
No 9
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.87 E-value=1.3e+02 Score=21.27 Aligned_cols=14 Identities=50% Similarity=1.009 Sum_probs=11.4
Q ss_pred eeEEecCCCCCCCC
Q psy8033 216 DIYSYNPDLTSDPF 229 (267)
Q Consensus 216 eIYsY~Pd~~~DPf 229 (267)
.||.|+|+.+..|+
T Consensus 6 ~I~R~dp~~~~~~~ 19 (106)
T d1nekb2 6 SIYRYNPDVDDAPR 19 (106)
T ss_dssp EEEECCTTTCSSCE
T ss_pred EEEEcCCCCCCCCE
Confidence 69999998776675
No 10
>d2f2ha1 b.150.1.1 (A:666-773) Putative glucosidase YicI, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.52 E-value=1e+02 Score=22.04 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=7.4
Q ss_pred CCCCCcccc
Q psy8033 119 GRSHYSYSC 127 (267)
Q Consensus 119 ~~pdydfS~ 127 (267)
-+|||||..
T Consensus 11 ~rPdYdy~~ 19 (108)
T d2f2ha1 11 QRPDYVWHE 19 (108)
T ss_dssp SCSCSCTTB
T ss_pred CCCCccccc
Confidence 489999984
Done!