RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8033
(267 letters)
>gnl|CDD|220132 pfam09174, Maf1, Maf1 regulator. Maf1 is a negative regulator of
RNA polymerase III. It targets the initiation factor
TFIIIB.
Length = 177
Score = 135 bits (343), Expect = 9e-40
Identities = 70/186 (37%), Positives = 95/186 (51%), Gaps = 18/186 (9%)
Query: 74 RIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYSYSCKMAGND 133
R+E+YSCK AG+DK+ +K SE DL +LS P+S ++ S+ + S ++
Sbjct: 5 RLEAYSCKSAGSDKRLFKSIESEV--NNCDLSSLSSPESLSPLNLSDSNDNLSPFGPLSE 62
Query: 134 KQFYKKFNSEQGTTPQ-----DLQALSPPQSGLGISPVAASLVMRKVLYWVMNAIDSNLS 188
K K D L P L V+N I++NLS
Sbjct: 63 KSSRKTLAYLIAILNASFPDYDFSVLKPHD-----------FKKEPSLSTVINEINNNLS 111
Query: 189 TTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLK 248
+ Y + LW +++ I L +C+IYSYNPD DPF EDG+LWSFNYFFYNKKLK
Sbjct: 112 SLVKNIYPSFVEELWEIIDEVISLKDCEIYSYNPDPDCDPFDEDGALWSFNYFFYNKKLK 171
Query: 249 RIVFFS 254
R+VF S
Sbjct: 172 RVVFLS 177
Score = 39.7 bits (93), Expect = 4e-04
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 21 IVGRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSG 63
I GR+E+YSCK AG+DK+ +K SE DL +LS P+S
Sbjct: 2 ITGRLEAYSCKSAGSDKRLFKSIESEV--NNCDLSSLSSPESL 42
>gnl|CDD|227379 COG5046, MAF1, Protein involved in Mod5 protein sorting
[Posttranslational modification, protein turnover,
chaperones].
Length = 282
Score = 49.2 bits (117), Expect = 5e-07
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 183 IDSNLST--TAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNY 240
++ L T +AG R W ++ L +C++ +Y P S +W F
Sbjct: 168 VEKPLGTLLSAGRL-RFPYDFCWESIGSHRRLSDCEVLNYMPYSISTTHKNSDDVWEFVG 226
Query: 241 FFYNKKLKRIVFFSC 255
F N KR+ +
Sbjct: 227 FLENILHKRVSYLGL 241
>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein. This is a family
of no apical meristem (NAM) proteins these are plant
development proteins. Mutations in NAM result in the
failure to develop a shoot apical meristem in petunia
embryos. NAM is indicated as having a role in
determining positions of meristems and primordial. One
member of this family NAP (NAC-like, activated by
AP3/PI) is encoded by the target genes of the AP3/PI
transcriptional activators and functions in the
transition between growth by cell division and cell
expansion in stamens and petals.
Length = 130
Score = 31.0 bits (71), Expect = 0.23
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 206 LEDEIVLPECDIYSYNP-DLTSDPFSEDGSLWSFNYFF 242
L V+PE DIY + P DL W YFF
Sbjct: 28 LPLLDVIPEVDIYKFEPWDLPDGKAKGGDREW---YFF 62
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction
endonuclease EcoRII and similar proteins. N-terminal
domain of type IIE restriction endonuclease EcoRII and
similar proteins. Type II restriction endonucleases are
components of restriction modification (RM) systems that
protect bacteria and archaea against invading foreign
DNA. They usually function as homodimers or
homotetramers that cleave DNA at defined sites of 4 to 8
bp in length, and they require Mg2+, not ATP or GTP,
for catalysis. EcoRII is specific for the 5'-CCWGG
sequence (W stands for A or T). EcoRII consists of 2
domains, the C-terminal catalytic/dimerization domain
(EcoRII-C), and the N-terminal effector DNA binding
domain (EcoRII-N). To be catalytically active, EcoRII
has to form a dimer.
Length = 142
Score = 29.6 bits (67), Expect = 0.85
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 220 YNPDLTSDPFSEDGSLWSFNYFFYNKKL 247
NPDLT+ S DG + +YN L
Sbjct: 46 PNPDLTAKISSHDGPTTESRFIYYNNGL 73
>gnl|CDD|213391 cd12148, fungal_TF_MHR, fungal transcription factor regulatory
middle homology region. This domain is present in the
large family of fungal zinc cluster transcription
factors that contain an N-terminal GAL4-like C6 zinc
binuclear cluster DNA-binding domain. Examples of
members of this large fungal group are the following
Saccharomyces cerevisiae transcription factors, GAL4,
STB5, DAL81, CAT8, RDR1, HAL9, PUT3, PPR1, ASG1, RSF2,
PIP2, as well as the C-terminal domain of the Cep3, a
subunit of the yeast centromere-binding factor 3. It has
been suggested that this region plays a regulatory role.
Length = 410
Score = 29.7 bits (66), Expect = 1.6
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 172 MRKVLYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSE 231
+R+ L+W + +D LS + G RP + + ++ LP + +S P
Sbjct: 152 LRRRLWWSLYILDRLLSLSLG------RPPSISDEDIDVPLP-SNEDDELSPSSSPPPPP 204
Query: 232 DGSLWSFNYFFYNKKLKRI 250
S ++F +L RI
Sbjct: 205 SEEPTSLSFFIALIRLARI 223
>gnl|CDD|111411 pfam02509, Rota_NS35, Rotavirus non-structural protein 35.
Rotavirus non-structural protein 35 (NS35) is a basic
protein which possesses RNA-binding activity and is
essential for genome replication.
Length = 316
Score = 29.1 bits (65), Expect = 2.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 66 ISPGRSHYRIESYSCKMAGNDKQFYKKFNSEQGTTPQ 102
I+ G+ HYR+ YS D+ Y+ F S++ Q
Sbjct: 219 ITHGKGHYRVVLYSQVANHADR-VYRTFKSDKKHGRQ 254
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23
[Intracellular trafficking and secretion].
Length = 755
Score = 28.3 bits (63), Expect = 5.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 68 PGRSHYRIESYSCKMAGNDKQFYKK 92
P RSH+ IES S + + +FYK
Sbjct: 304 PMRSHHDIESDSAQHSKKATKFYKG 328
>gnl|CDD|224087 COG1165, MenD,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase [Coenzyme metabolism].
Length = 566
Score = 27.7 bits (62), Expect = 7.0
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 16/65 (24%)
Query: 149 QDLQALSPPQSGLGISPVAASLVMRKVLYWVM-------------NAIDSNLSTTAGEQY 195
L L PPQ L V S+ +R V + ID +ST G
Sbjct: 380 AALADLLPPQDQLF---VGNSMPVRDVDALGQLPAGYRVYSNRGASGIDGTVSTALGIAR 436
Query: 196 RTLRP 200
T +P
Sbjct: 437 ATQKP 441
>gnl|CDD|234960 PRK01565, PRK01565, thiamine biosynthesis protein ThiI;
Provisional.
Length = 394
Score = 27.5 bits (62), Expect = 7.7
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 159 SGLGI-SPVAASLVMRK 174
SG GI SPVA L M++
Sbjct: 184 SG-GIDSPVAGYLAMKR 199
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.399
Gapped
Lambda K H
0.267 0.0688 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,745,100
Number of extensions: 1270542
Number of successful extensions: 1002
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1001
Number of HSP's successfully gapped: 19
Length of query: 267
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 172
Effective length of database: 6,723,972
Effective search space: 1156523184
Effective search space used: 1156523184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)