RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8033
         (267 letters)



>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313,
           C-terminal domain {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 132

 Score = 27.8 bits (62), Expect = 0.82
 Identities = 4/16 (25%), Positives = 9/16 (56%), Gaps = 1/16 (6%)

Query: 159 SGLGISPVAASLVMRK 174
               +S +A  L+M++
Sbjct: 12  HD-ELSALAIFLMMKR 26


>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 271

 Score = 27.3 bits (60), Expect = 1.7
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 17/97 (17%)

Query: 58  SPPQSGLGI-------SPGRSHYRIESYSCKMAGNDKQFYKKFN---SEQGTTPQDLQAL 107
            P     G+        P RSH+ I+S   +      +FY +     +  G T  D+ A 
Sbjct: 171 GPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTV-DIFAG 229

Query: 108 SPPQSGLGISPGRSHYSYSCKMAGNDKQFYKKFNSEQ 144
              Q G+      S         G        F++  
Sbjct: 230 CYDQIGM------SEMKQLTDSTGGVLLLTDAFSTAI 260


>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 276

 Score = 25.7 bits (56), Expect = 6.7
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 185 SNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYN 244
             L+ +   +   L   L   L+ +++     +         +   +  +L      + N
Sbjct: 213 QQLTDSTQIKMDILAQVLQILLKSKLL-----VLEDENANVDEVELKPDTLIKLYLGYKN 267

Query: 245 KKLK 248
           KKL+
Sbjct: 268 KKLR 271


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0558    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,011,898
Number of extensions: 45979
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 3
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)