BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8034
         (73 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DLM|A Chain A, Crystal Structure Of Tudor Domain Of Human Histone-Lysine
           N- Methyltransferase Setdb1
          Length = 213

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 15  AQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTS-TEEYPHLRPAR 70
            +  LR     D GY+     S +YP+  PL   W+ I  +      EEY    P R
Sbjct: 98  VKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYVTAYPNR 154


>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
           Kappa At 1.95a Resolution
          Length = 313

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 1   MEPVSGQPAREDLVAQQVLRSAAPVDSGYSIAPHHSGVY-PVHEPLYTAWKHIWR 54
           ++PV   P+ + + A  +         GY    H+     PVHE +Y  W+ IW+
Sbjct: 88  LQPVEDDPSSDYINANYI--------DGYQRPSHYIATQGPVHETVYDFWRMIWQ 134


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,418,982
Number of Sequences: 62578
Number of extensions: 78641
Number of successful extensions: 134
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 3
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)