BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8034
(73 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V3L1|NDST_DROME Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase
OS=Drosophila melanogaster GN=sfl PE=1 SV=1
Length = 1048
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 44/50 (88%)
Query: 24 PVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
P DSGYSI+PHHSGVYP HE LY AWK +W VKVTSTEEYPHLRPARLRR
Sbjct: 576 PTDSGYSISPHHSGVYPAHELLYMAWKKVWNVKVTSTEEYPHLRPARLRR 625
>sp|O95803|NDST3_HUMAN Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3
OS=Homo sapiens GN=NDST3 PE=2 SV=1
Length = 873
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/55 (67%), Positives = 43/55 (78%)
Query: 19 LRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
L P D GY++APHHSGVYPVH LY AWK +W +K+TSTEEYPHL+PAR RR
Sbjct: 408 LEHGIPTDMGYAVAPHHSGVYPVHVQLYEAWKKVWNIKITSTEEYPHLKPARYRR 462
>sp|Q6GQK9|NDST1_XENLA Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
OS=Xenopus laevis GN=ndst1 PE=2 SV=1
Length = 878
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/50 (76%), Positives = 42/50 (84%)
Query: 24 PVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
P D GY++APHHSGVYPVH LY AWK IW +KVTSTEEYPHL+PAR RR
Sbjct: 418 PTDMGYAVAPHHSGVYPVHVQLYEAWKQIWGIKVTSTEEYPHLKPARYRR 467
>sp|Q5U4X8|NDST1_XENTR Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
OS=Xenopus tropicalis GN=ndst1 PE=2 SV=1
Length = 878
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/50 (76%), Positives = 42/50 (84%)
Query: 24 PVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
P D GY++APHHSGVYPVH LY AWK IW +KVTSTEEYPHL+PAR RR
Sbjct: 418 PTDMGYAVAPHHSGVYPVHVQLYEAWKQIWGIKVTSTEEYPHLKPARYRR 467
>sp|Q9EQH7|NDST3_MOUSE Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3
OS=Mus musculus GN=Ndst3 PE=2 SV=2
Length = 873
Score = 89.0 bits (219), Expect = 7e-18, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 43/55 (78%)
Query: 19 LRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
L P D GY+++PHHSGVYPVH LY AWK +W +K+TSTEEYPHL+PAR RR
Sbjct: 408 LEHGIPTDMGYAVSPHHSGVYPVHVQLYEAWKKVWNIKITSTEEYPHLKPARYRR 462
>sp|P52850|NDST2_MOUSE Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2
OS=Mus musculus GN=Ndst2 PE=1 SV=1
Length = 883
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 45/61 (73%)
Query: 13 LVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLR 72
L Q L P D GY++APHHSGVYP+H LY AWK +W ++VTSTEEYPHLRPAR R
Sbjct: 410 LNKQFALEHGIPTDLGYAVAPHHSGVYPIHSQLYEAWKSVWGIQVTSTEEYPHLRPARYR 469
Query: 73 R 73
R
Sbjct: 470 R 470
>sp|P52849|NDST2_HUMAN Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2
OS=Homo sapiens GN=NDST2 PE=1 SV=1
Length = 883
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 45/61 (73%)
Query: 13 LVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLR 72
L Q L P D GY++APHHSGVYP+H LY AWK +W ++VTSTEEYPHLRPAR R
Sbjct: 410 LNKQFALEHGIPTDLGYAVAPHHSGVYPIHTQLYEAWKSVWGIQVTSTEEYPHLRPARYR 469
Query: 73 R 73
R
Sbjct: 470 R 470
>sp|O97583|NDST2_BOVIN Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2
OS=Bos taurus GN=NDST2 PE=2 SV=1
Length = 884
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 45/61 (73%)
Query: 13 LVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLR 72
L Q L P D GY++APHHSGVYP+H LY AWK +W ++VTSTEEYPHLRPAR R
Sbjct: 411 LNKQFALEHGIPTDLGYAVAPHHSGVYPIHTQLYEAWKSVWGIQVTSTEEYPHLRPARYR 470
Query: 73 R 73
R
Sbjct: 471 R 471
>sp|Q9H3R1|NDST4_HUMAN Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4
OS=Homo sapiens GN=NDST4 PE=2 SV=1
Length = 872
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 19 LRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
L P++ GY++APHHSGVYPVH LY AWK +W ++VTSTEEYPHL+PAR R+
Sbjct: 407 LEHGIPINMGYAVAPHHSGVYPVHIQLYAAWKKVWGIQVTSTEEYPHLKPARYRK 461
>sp|Q9EQW8|NDST4_MOUSE Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4
OS=Mus musculus GN=Ndst4 PE=2 SV=2
Length = 872
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 19 LRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
L P++ GY++APHHSGVYPVH LY AWK +W ++VTSTEEYPHL+PAR R+
Sbjct: 407 LEHGIPINLGYAVAPHHSGVYPVHIQLYAAWKKVWGIQVTSTEEYPHLKPARYRK 461
>sp|Q02353|NDST1_RAT Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
OS=Rattus norvegicus GN=Ndst1 PE=1 SV=1
Length = 882
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 42/52 (80%)
Query: 22 AAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
P D GY++APHHSGVYPVH LY AWK +W ++VTSTEEYPHL+PAR RR
Sbjct: 420 GIPTDMGYAVAPHHSGVYPVHVQLYEAWKQVWNIRVTSTEEYPHLKPARYRR 471
>sp|P52848|NDST1_HUMAN Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
OS=Homo sapiens GN=NDST1 PE=1 SV=1
Length = 882
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 42/52 (80%)
Query: 22 AAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
P D GY++APHHSGVYPVH LY AWK +W ++VTSTEEYPHL+PAR RR
Sbjct: 420 GIPTDMGYAVAPHHSGVYPVHVQLYEAWKQVWSIRVTSTEEYPHLKPARYRR 471
>sp|Q3UHN9|NDST1_MOUSE Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
OS=Mus musculus GN=Ndst1 PE=1 SV=2
Length = 882
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 42/52 (80%)
Query: 22 AAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
P D GY++APHHSGVYPVH LY AWK +W ++VTSTEEYPHL+PAR RR
Sbjct: 420 GIPTDMGYAVAPHHSGVYPVHVQLYEAWKQVWGIRVTSTEEYPHLKPARYRR 471
>sp|Q60V90|NDST_CAEBR Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
OS=Caenorhabditis briggsae GN=hst-1 PE=3 SV=3
Length = 859
Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats.
Identities = 32/50 (64%), Positives = 39/50 (78%)
Query: 24 PVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
P+D Y+IAP H GV+PVHE +Y AWK IW V VT+TEEYPHL+PA R+
Sbjct: 399 PIDYPYAIAPQHDGVFPVHEQMYEAWKKIWNVTVTATEEYPHLKPATGRK 448
>sp|Q966W3|NDST_CAEEL Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
OS=Caenorhabditis elegans GN=hst-1 PE=2 SV=1
Length = 852
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 9 AREDLVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRP 68
A+ L AQ + PVD Y+IAP H GV+PVHE L+ AW+ +W V VT+TEEYPH +P
Sbjct: 386 AQNKLFAQNM---HLPVDYPYAIAPQHDGVFPVHEQLFRAWRKVWNVSVTATEEYPHFKP 442
Query: 69 ARLRR 73
A R+
Sbjct: 443 ATARK 447
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,717,784
Number of Sequences: 539616
Number of extensions: 941909
Number of successful extensions: 1879
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1864
Number of HSP's gapped (non-prelim): 17
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)