Query psy8034
Match_columns 73
No_of_seqs 44 out of 46
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 16:44:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lur_A Putative bacterial tran 57.2 4.8 0.00016 25.2 1.6 24 28-54 96-119 (158)
2 3ewt_E Tumor necrosis factor r 57.0 7 0.00024 19.6 1.9 21 3-23 3-25 (25)
3 3gk6_A Integron cassette prote 45.5 12 0.00042 24.0 2.2 24 28-54 114-137 (170)
4 3f75_P Toxopain-2, cathepsin L 38.4 13 0.00045 23.4 1.4 29 34-62 9-41 (106)
5 3u7d_B Protein HEG homolog 1; 32.8 10 0.00036 19.3 0.2 9 34-42 2-10 (26)
6 1apy_A Aspartylglucosaminidase 30.0 76 0.0026 21.5 4.3 42 14-68 109-150 (162)
7 3pvi_A Protein (pvuii endonucl 25.9 5.8 0.0002 27.6 -2.0 32 17-54 101-132 (157)
8 4fak_A Ribosomal RNA large sub 23.0 32 0.0011 23.3 1.3 8 43-50 147-154 (163)
9 2khf_A PLNJ; anti-microbial, b 21.0 21 0.0007 18.1 0.0 7 48-54 2-8 (26)
10 1ns5_A Hypothetical protein YB 21.0 38 0.0013 22.6 1.3 9 42-50 137-145 (155)
11 1o6d_A Hypothetical UPF0247 pr 20.8 38 0.0013 23.0 1.3 9 42-50 136-144 (163)
12 1to0_A Hypothetical UPF0247 pr 20.5 39 0.0013 22.9 1.3 9 42-50 142-150 (167)
No 1
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=57.24 E-value=4.8 Score=25.16 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=17.9
Q ss_pred CceeeccccceecccHHHHHHHHHHhc
Q psy8034 28 GYSIAPHHSGVYPVHEPLYTAWKHIWR 54 (73)
Q Consensus 28 ~yaVaphhsGvYpvh~~ly~aWk~vw~ 54 (73)
.|||.. |.|-+ .+.+-++|+.+|+
T Consensus 96 ~Yavf~-~~G~~--~~~i~~~~~~i~~ 119 (158)
T 3lur_A 96 KYMVFE-AQGAV--PKAVQQKMEEVHH 119 (158)
T ss_dssp EEEEEE-EESST--THHHHHHHHHHHH
T ss_pred eEEEEE-EecCh--HHHHHHHHHHHHH
Confidence 478854 45544 5899999999997
No 2
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=57.01 E-value=7 Score=19.63 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=16.0
Q ss_pred CccchhhHHHHH--HHHHHhcCC.
Q psy8034 3 PVSGQPAREDLV--AQQVLRSAA. 23 (73)
Q Consensus 3 ~~~~l~~~M~lN--k~FA~~h~i. 23 (73)
.+..++++|.++ |+|+..+|+
T Consensus 3 yIp~IAe~M~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 3 YITTIAGVMTLSQVKGFVRKNGVx 26 (26)
T ss_pred chhHHHHHHhHHHHHHHHHHcCC.
Confidence 356678888776 789999875
No 3
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=45.48 E-value=12 Score=24.05 Aligned_cols=24 Identities=17% Similarity=0.602 Sum_probs=18.2
Q ss_pred CceeeccccceecccHHHHHHHHHHhc
Q psy8034 28 GYSIAPHHSGVYPVHEPLYTAWKHIWR 54 (73)
Q Consensus 28 ~yaVaphhsGvYpvh~~ly~aWk~vw~ 54 (73)
.|||-. |.| |..+.+-++|+.+|+
T Consensus 114 ~YAVF~-~~G--~~p~~i~~~w~~I~~ 137 (170)
T 3gk6_A 114 KYVTFS-ATG--EMPQVVIDLWNEVWN 137 (170)
T ss_dssp EEEEEE-EES--STTHHHHHHHHHHHH
T ss_pred CEEEEE-ecC--CCHHHHHHHHHHHHH
Confidence 478854 456 445789999999998
No 4
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Probab=38.36 E-value=13 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.515 Sum_probs=15.7
Q ss_pred cccceecccHH----HHHHHHHHhcccccccee
Q psy8034 34 HHSGVYPVHEP----LYTAWKHIWRVKVTSTEE 62 (73)
Q Consensus 34 hhsGvYpvh~~----ly~aWk~vw~i~vTstee 62 (73)
||++++-.++. .+++|+..++..-.+.+|
T Consensus 9 ~~~~~~~~~~~~~~~~F~~wk~~~~K~Y~~~~E 41 (106)
T 3f75_P 9 HHGSIWEWKEAHFQDAFSSFQAMYAKSYATEEE 41 (106)
T ss_dssp -------CCHHHHHHHHHHHHHHHTCCCSSHHH
T ss_pred cccchhccCcHHHHHHHHHHHHHhCCcCCCHHH
Confidence 67777777664 788999999965555444
No 5
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=32.77 E-value=10 Score=19.25 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=7.2
Q ss_pred cccceeccc
Q psy8034 34 HHSGVYPVH 42 (73)
Q Consensus 34 hhsGvYpvh 42 (73)
.||++||-+
T Consensus 2 rhsciypgq 10 (26)
T 3u7d_B 2 RHSCIFPGQ 10 (26)
T ss_pred cccccccCc
Confidence 489999964
No 6
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=29.99 E-value=76 Score=21.50 Aligned_cols=42 Identities=5% Similarity=-0.014 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCCCCCceeeccccceecccHHHHHHHHHHhccccccceecCCCCc
Q psy8034 14 VAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRP 68 (73)
Q Consensus 14 Nk~FA~~h~ip~~~~yaVaphhsGvYpvh~~ly~aWk~vw~i~vTsteeyPhlrp 68 (73)
..+||.++|++. .+.+-+.-.++|++ |.-+.++...+=+..|
T Consensus 109 A~~fA~~~G~~~------------~~l~t~~~~~~~~~-~~~~~~qpn~~~nv~p 150 (162)
T 1apy_A 109 ATTFAQSMGFIN------------EDLSTSASQALHSD-WLARNCQPNYWRNVIP 150 (162)
T ss_dssp HHHHHHHTTCCC------------CCCCCHHHHHHHHH-HHHTTSCSCCBCSCBS
T ss_pred HHHHHHHcCCCc------------cccCCHHHHHHHHH-HHHhccCCCccccCCC
Confidence 568999999986 34455555666654 4433433333333443
No 7
>3pvi_A Protein (pvuii endonuclease); complex (restriction endonuclease/DNA), mutant, protein/DNA, hydrolase/DNA complex; HET: DNA; 1.59A {Proteus vulgaris} SCOP: c.52.1.6 PDB: 1eyu_A* 1f0o_A 1pvi_A* 1ni0_A 1k0z_A 1h56_A 1pvu_A 2pvi_A*
Probab=25.93 E-value=5.8 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.533 Sum_probs=25.7
Q ss_pred HHHhcCCCCCCCceeeccccceecccHHHHHHHHHHhc
Q psy8034 17 QVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWR 54 (73)
Q Consensus 17 FA~~h~ip~~~~yaVaphhsGvYpvh~~ly~aWk~vw~ 54 (73)
||.=.+|.+...|...|-+- |.+|..|-+.|.
T Consensus 101 FAiy~~I~l~~iY~l~P~~l------E~~y~~WE~kw~ 132 (157)
T 3pvi_A 101 FAIYRGIAIEAIYRLEPKDL------EFYYDKWERKWY 132 (157)
T ss_dssp EEEEETTEEEEEEEECHHHH------HHHHHHHHHHHH
T ss_pred eeeecCcchhhhhhcCHHHh------HHHHHHHHHHHH
Confidence 67777888888888877664 778999999995
No 8
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=23.04 E-value=32 Score=23.27 Aligned_cols=8 Identities=50% Similarity=0.916 Sum_probs=6.7
Q ss_pred HHHHHHHH
Q psy8034 43 EPLYTAWK 50 (73)
Q Consensus 43 ~~ly~aWk 50 (73)
||||+||.
T Consensus 147 EQlYRA~t 154 (163)
T 4fak_A 147 EQVYRAFK 154 (163)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 78898887
No 9
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=20.97 E-value=21 Score=18.07 Aligned_cols=7 Identities=57% Similarity=1.711 Sum_probs=6.1
Q ss_pred HHHHHhc
Q psy8034 48 AWKHIWR 54 (73)
Q Consensus 48 aWk~vw~ 54 (73)
|||+.|.
T Consensus 2 awknfws 8 (26)
T 2khf_A 2 AWKNFWS 8 (26)
T ss_dssp CHHHHHH
T ss_pred cHHHHHH
Confidence 6999997
No 10
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=20.96 E-value=38 Score=22.65 Aligned_cols=9 Identities=56% Similarity=1.165 Sum_probs=7.1
Q ss_pred cHHHHHHHH
Q psy8034 42 HEPLYTAWK 50 (73)
Q Consensus 42 h~~ly~aWk 50 (73)
=||+|+||.
T Consensus 137 ~EQiYRA~~ 145 (155)
T 1ns5_A 137 AESLYRAWS 145 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 478898886
No 11
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=20.83 E-value=38 Score=22.95 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=7.5
Q ss_pred cHHHHHHHH
Q psy8034 42 HEPLYTAWK 50 (73)
Q Consensus 42 h~~ly~aWk 50 (73)
=||||+||.
T Consensus 136 ~EQiYRA~t 144 (163)
T 1o6d_A 136 LEQIFRAFK 144 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999987
No 12
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=20.49 E-value=39 Score=22.89 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=7.1
Q ss_pred cHHHHHHHH
Q psy8034 42 HEPLYTAWK 50 (73)
Q Consensus 42 h~~ly~aWk 50 (73)
=||||+||.
T Consensus 142 ~EQiYRA~t 150 (167)
T 1to0_A 142 VEQIYRAFR 150 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 378898886
Done!