Query psy8034
Match_columns 73
No_of_seqs 44 out of 46
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 16:45:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8034.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8034hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vl2a1 c.26.2.1 (A:2-169) Arg 45.6 4.3 0.00031 22.3 1.4 11 15-25 158-168 (168)
2 d1j20a1 c.26.2.1 (A:1-165) Arg 38.7 6.7 0.00049 21.3 1.5 13 13-25 152-164 (165)
3 d1k4ia_ d.115.1.2 (A:) 3,4-dih 34.2 3.2 0.00023 27.8 -0.5 17 12-28 186-202 (216)
4 d1to0a_ c.116.1.3 (A:) Hypothe 23.8 14 0.00099 22.4 1.2 9 42-50 142-150 (157)
5 d1o6da_ c.116.1.3 (A:) Hypothe 22.5 16 0.0012 22.0 1.3 9 42-50 134-142 (147)
6 d1vh0a_ c.116.1.3 (A:) Hypothe 21.5 17 0.0013 21.9 1.3 9 42-50 142-150 (157)
7 d1wraa1 d.157.1.8 (A:30-334) T 21.1 22 0.0016 22.0 1.8 24 28-51 219-242 (305)
8 d2g7oa1 a.241.1.1 (A:60-127) T 20.8 23 0.0017 20.1 1.7 9 30-38 30-38 (68)
9 d3pvia_ c.52.1.6 (A:) Restrict 18.8 4.6 0.00034 26.4 -2.0 33 17-55 100-132 (156)
10 d1ns5a_ c.116.1.3 (A:) Hypothe 18.4 22 0.0016 21.3 1.3 8 43-50 138-145 (153)
No 1
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=45.57 E-value=4.3 Score=22.32 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=9.7
Q ss_pred HHHHHhcCCCC
Q psy8034 15 AQQVLRSAAPV 25 (73)
Q Consensus 15 k~FA~~h~ip~ 25 (73)
.+||+++||||
T Consensus 158 ~~ya~~~~iPi 168 (168)
T d1vl2a1 158 INYAMEKGIPI 168 (168)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHcCCCC
Confidence 57899999996
No 2
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=38.66 E-value=6.7 Score=21.28 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=10.9
Q ss_pred HHHHHHHhcCCCC
Q psy8034 13 LVAQQVLRSAAPV 25 (73)
Q Consensus 13 lNk~FA~~h~ip~ 25 (73)
--++||+.++|||
T Consensus 152 ei~~ya~~~~iPv 164 (165)
T d1j20a1 152 EMIAYAEAHGIPV 164 (165)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHhCCCC
Confidence 3578999999997
No 3
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]}
Probab=34.15 E-value=3.2 Score=27.75 Aligned_cols=17 Identities=18% Similarity=-0.107 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCCCCCC
Q psy8034 12 DLVAQQVLRSAAPVDSG 28 (73)
Q Consensus 12 ~lNk~FA~~h~ip~~~~ 28 (73)
..-++||++|++|+-.+
T Consensus 186 ~~l~~fA~~h~l~~i~i 202 (216)
T d1k4ia_ 186 DECVAFARRWGLKVCTI 202 (216)
T ss_dssp HHHHHHHHHTTCEEEEH
T ss_pred HHHHHHHHHcCCcEEEH
Confidence 55679999999987543
No 4
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=23.81 E-value=14 Score=22.44 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=6.7
Q ss_pred cHHHHHHHH
Q psy8034 42 HEPLYTAWK 50 (73)
Q Consensus 42 h~~ly~aWk 50 (73)
=||||+||.
T Consensus 142 ~EQiYRa~t 150 (157)
T d1to0a_ 142 VEQIYRAFR 150 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 378888875
No 5
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=22.53 E-value=16 Score=22.02 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=6.8
Q ss_pred cHHHHHHHH
Q psy8034 42 HEPLYTAWK 50 (73)
Q Consensus 42 h~~ly~aWk 50 (73)
=||||+||.
T Consensus 134 ~EQlYRa~~ 142 (147)
T d1o6da_ 134 LEQIFRAFK 142 (147)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 478888875
No 6
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=21.46 E-value=17 Score=21.92 Aligned_cols=9 Identities=44% Similarity=0.733 Sum_probs=6.9
Q ss_pred cHHHHHHHH
Q psy8034 42 HEPLYTAWK 50 (73)
Q Consensus 42 h~~ly~aWk 50 (73)
=||||+||.
T Consensus 142 ~EQlYRa~~ 150 (157)
T d1vh0a_ 142 IEQVYRAFK 150 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 378888886
No 7
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=21.06 E-value=22 Score=21.99 Aligned_cols=24 Identities=8% Similarity=0.003 Sum_probs=19.3
Q ss_pred CceeeccccceecccHHHHHHHHH
Q psy8034 28 GYSIAPHHSGVYPVHEPLYTAWKH 51 (73)
Q Consensus 28 ~yaVaphhsGvYpvh~~ly~aWk~ 51 (73)
-.-++|||++.+..-.+|.++-+-
T Consensus 219 ~l~~~~HHGs~~s~s~~~l~~i~P 242 (305)
T d1wraa1 219 LMKFNHHHDTNKSNTKDFIKNLSP 242 (305)
T ss_dssp EEECTTTTBCSSSSCHHHHHHHCC
T ss_pred eEEEcccCCCCccCHHHHHHhhCC
Confidence 355779999999988888888763
No 8
>d2g7oa1 a.241.1.1 (A:60-127) TraM {Escherichia coli [TaxId: 562]}
Probab=20.77 E-value=23 Score=20.09 Aligned_cols=9 Identities=56% Similarity=0.899 Sum_probs=7.6
Q ss_pred eeeccccce
Q psy8034 30 SIAPHHSGV 38 (73)
Q Consensus 30 aVaphhsGv 38 (73)
++|||.||-
T Consensus 30 ~lSPHvsgn 38 (68)
T d2g7oa1 30 SLSPHVSGN 38 (68)
T ss_dssp HTCGGGTTC
T ss_pred ccCcccCCC
Confidence 688999995
No 9
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]}
Probab=18.77 E-value=4.6 Score=26.38 Aligned_cols=33 Identities=18% Similarity=0.507 Sum_probs=26.9
Q ss_pred HHHhcCCCCCCCceeeccccceecccHHHHHHHHHHhcc
Q psy8034 17 QVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRV 55 (73)
Q Consensus 17 FA~~h~ip~~~~yaVaphhsGvYpvh~~ly~aWk~vw~i 55 (73)
||.=.+|.+...|..-|-|. |-.|..|.+.|-.
T Consensus 100 FA~y~~I~l~~iy~l~p~~l------E~~Y~kWE~qw~~ 132 (156)
T d3pvia_ 100 FAIYRGIAIEAIYRLEPKDL------EFYYDKWERKWYS 132 (156)
T ss_dssp EEEEETTEEEEEEEECHHHH------HHHHHHHHHHHHH
T ss_pred EeeecCceeehhhhcCHHHh------HHHHHHHHHHHhh
Confidence 67778888889999988886 4568999999953
No 10
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=18.38 E-value=22 Score=21.30 Aligned_cols=8 Identities=63% Similarity=1.344 Sum_probs=5.7
Q ss_pred HHHHHHHH
Q psy8034 43 EPLYTAWK 50 (73)
Q Consensus 43 ~~ly~aWk 50 (73)
||||+||.
T Consensus 138 EQlYRa~~ 145 (153)
T d1ns5a_ 138 ESLYRAWS 145 (153)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67777775
Done!