RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8034
         (73 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.2 bits (65), Expect = 0.080
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 17/48 (35%)

Query: 7    QPAREDL----VAQ-QVLRSAAPVDSGYSIAPHHS-GVYPVHEPLYTA 48
            QPA   L     A  + L+S   + +  + A  HS G     E  Y A
Sbjct: 1733 QPA---LTLMEKAAFEDLKSKGLIPADATFA-GHSLG-----E--YAA 1769


>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural
           genomics, structural genomics consortium, SGC,
           alternative splicing; 1.77A {Homo sapiens}
          Length = 213

 Score = 26.5 bits (58), Expect = 0.70
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 26  DSGYSIAPHHSGVYPVHEPLYTAWKHI 52
           D GY+     S +YP+  PL   W+ I
Sbjct: 109 DDGYASYVTQSELYPICRPLKKTWEDI 135


>3cwb_I Mitochondrial ubiquinol-cytochrome C reductase IR subunit, leader
          sequence; crocacin D, inhibitor design,
          structure-activity relationshi polyketide, fungicide;
          HET: BOG HEM PEE ICX UQ HEC CDL; 3.51A {Gallus gallus}
          Length = 52

 Score = 24.4 bits (52), Expect = 2.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 2  EPVSGQPAREDLVAQQVLRSAAPV 25
          E +SG+ AR DLVA   L + A V
Sbjct: 27 ESMSGRSARRDLVAGISLNAPASV 50


>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic
           translation initiation factor 2balpha (EIF2balpha);
           2.65A {Homo sapiens}
          Length = 315

 Score = 24.2 bits (53), Expect = 4.5
 Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 35  HSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARL 71
           +S V  V   L  A     R  V  TE  P L   ++
Sbjct: 130 YSRV--VLRVLEAAVAAKKRFSVYVTESQPDLSGKKM 164


>3l70_I Cytochrome B-C1 complex subunit rieske, mitochondrial; cytochrome
          BC1, membrane protein, heme protein, rieske iron sulfur
          protein; HET: PEE HEM JZV UQ CDL HEC BOG; 2.75A {Gallus
          gallus} PDB: 3h1i_I* 3h1h_I* 3h1k_I* 3h1l_I* 3h1j_I*
          3l71_I* 3l72_I* 3l73_I* 3l74_I* 3l75_I*
          Length = 47

 Score = 23.3 bits (49), Expect = 4.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 2  EPVSGQPAREDLVAQQVLRSAAPV 25
          E +SG+ AR DLVA   L + A V
Sbjct: 22 ESMSGRSARRDLVAGISLNAPASV 45


>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
           pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
           2.60A {Mycobacterium tuberculosis}
          Length = 699

 Score = 23.9 bits (52), Expect = 6.5
 Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 9/35 (25%)

Query: 45  LYTAWKHIWRVKVTSTEEYPHLR-------PARLR 72
           ++  W  IWR K  S       R       P   R
Sbjct: 632 VFFGWAQIWRTK--SRAAEAIRRLAVDPHSPPEFR 664


>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel,
          tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces
          cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A*
          1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A*
          1aw5_A
          Length = 342

 Score = 23.3 bits (51), Expect = 8.6
 Identities = 3/15 (20%), Positives = 5/15 (33%)

Query: 59 STEEYPHLRPARLRR 73
           T E+    P  +  
Sbjct: 2  HTAEFLETEPTEISS 16


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.132    0.418 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,164,329
Number of extensions: 52657
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 8
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)